Created
December 10, 2021 08:09
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/28723 (:no_entry:) running on GitHub PR BlueBrain/CoreNeuron#706.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1639123609:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1639123609:resolve_secrets [0Ksection_start:1639123609:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor151445292, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 28723, build ref affbc25e30b4b6c572b1dae49fab140c6c1c18fd, job ID 106270 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106270 | |
| A slurm job will be created with name GL_J106270_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 123420 | |
| job state: R | |
| section_end:1639123611:prepare_executor [0Ksection_start:1639123611:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1639123613:prepare_script [0Ksection_start:1639123613:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1639123614:get_sources [0Ksection_start:1639123614:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40300 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1639123628:restore_cache [0Ksection_start:1639123628:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl:gpu (106269)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40370 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=106269 responseStatus[0;m=200 OK token[0;m=Ned4VzCp | |
| section_end:1639123629:download_artifacts [0Ksection_start:1639123629:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106270/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106270/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106270/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106270/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106270/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="affbc25e30b4b6c572b1dae49fab140c6c1c18fd" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..75aa40d 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="affbc25e30b4b6c572b1dae49fab140c6c1c18fd") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+nmodl+openmp+gpu+tests~legacy-unit~report build_type=RelWithDebInfo ^/nswa6573eazhleffns23ijmh436w7top | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be uwxc42nfcqke5zm7ua5buzwzhxpumg4i | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106270/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106270/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Fri Dec 10 09:07:44 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.51 / 0.51 (98.69 %) | |
| Files: 19303 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'uwxc42nfcqke5zm7ua5buzwzhxpumg4i' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit+nmodl+openmp~report+tests build_type=RelWithDebInfo | |
| [+] ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - uwxc42n coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] nswa657 ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| ==> Installing coreneuron-develop-uwxc42nfcqke5zm7ua5buzwzhxpumg4i | |
| ==> No binary for coreneuron-develop-uwxc42nfcqke5zm7ua5buzwzhxpumg4i found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> Error: ProcessError: Command exited with status 1: | |
| 'cmake' '-G' 'Ninja' '-DCMAKE_INSTALL_PREFIX:STRING=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-uwxc42' '-DCMAKE_BUILD_TYPE:STRING=RelWithDebInfo' '-DCMAKE_INTERPROCEDURAL_OPTIMIZATION:BOOL=OFF' '-DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=OFF' '-DCMAKE_INSTALL_RPATH:STRING=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-uwxc42/lib;/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-uwxc42/lib64;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k/lib;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7/lib;/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65/lib;/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3/lib;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst/lib;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf/lib;/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde/lib;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj/lib;/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2/lib;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x/lib64;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/nvhpc-21.9-wsrbqb/Linux_x86_64/21.9/compilers' '-DCMAKE_PREFIX_PATH:STRING=/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x;/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7;/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65' '-DCORENRN_ENABLE_SPLAYTREE_QUEUING=ON' '-DCMAKE_C_FLAGS=' '-DCMAKE_CXX_FLAGS=' '-DCORENRN_ENABLE_REPORTING=OFF' '-DCORENRN_ENABLE_MPI=ON' '-DCORENRN_ENABLE_OPENMP=ON' '-DCORENRN_ENABLE_UNIT_TESTS=ON' '-DCORENRN_ENABLE_TIMEOUT=OFF' '-DPYTHON_EXECUTABLE=/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst/bin/python3.8' '-DCORENRN_ENABLE_NMODL=ON' '-DCORENRN_NMODL_DIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65' '-DCORENRN_NMODL_FLAGS=codegen --force' '-DCOMPILE_LIBRARY_TYPE=STATIC' '-DCMAKE_CUDA_COMPILER=/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x/bin/nvcc' '-DCMAKE_CUDA_HOST_COMPILER=/gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/compilers/2021-01-06/linux-rhel7-x86_64/gcc-4.8.5/gcc-9.3.0-45gzrp/bin/gcc' '-DCORENRN_ENABLE_GPU=ON' '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106270/_/spack-build/spack-stage-coreneuron-develop-uwxc42nfcqke5zm7ua5buzwzhxpumg4i/spack-src' | |
| 6 errors found in build log: | |
| 126 -- Reporting | OFF | |
| 127 -- --------------+------------------------------------------------- | |
| ------------- | |
| 128 -- See documentation : https://github.com/BlueBrain/CoreNeuron/ | |
| 129 -- --------------+------------------------------------------------- | |
| ------------- | |
| 130 -- | |
| 131 -- Configuring done | |
| >> 132 CMake Error at coreneuron/CMakeLists.txt:186 (add_library): | |
| 133 Target "coreneuron" links to target "CUDA::cudart" but the target | |
| was not | |
| 134 found. Perhaps a find_package() call is missing for an IMPORTED | |
| target, or | |
| 135 an ALIAS target is missing? | |
| 136 | |
| 137 | |
| >> 138 CMake Error at tests/unit/cmdline_interface/CMakeLists.txt:6 (add_e | |
| xecutable): | |
| 139 Target "cmd_interface_test_bin" links to target "CUDA::cudart" bu | |
| t the | |
| 140 target was not found. Perhaps a find_package() call is missing f | |
| or an | |
| 141 IMPORTED target, or an ALIAS target is missing? | |
| 142 | |
| 143 | |
| >> 144 CMake Error at tests/unit/interleave_info/CMakeLists.txt:6 (add_exe | |
| cutable): | |
| 145 Target "interleave_info_bin" links to target "CUDA::cudart" but t | |
| he target | |
| 146 was not found. Perhaps a find_package() call is missing for an I | |
| MPORTED | |
| 147 target, or an ALIAS target is missing? | |
| 148 | |
| 149 | |
| >> 150 CMake Error at tests/unit/queueing/CMakeLists.txt:6 (add_executable | |
| ): | |
| 151 Target "queuing_test_bin" links to target "CUDA::cudart" but the | |
| target was | |
| 152 not found. Perhaps a find_package() call is missing for an IMPOR | |
| TED | |
| 153 target, or an ALIAS target is missing? | |
| 154 | |
| 155 | |
| >> 156 CMake Error at tests/unit/lfp/CMakeLists.txt:10 (add_executable): | |
| 157 Target "lfp_test_bin" links to target "CUDA::cudart" but the targ | |
| et was not | |
| 158 found. Perhaps a find_package() call is missing for an IMPORTED | |
| target, or | |
| 159 an ALIAS target is missing? | |
| 160 | |
| 161 | |
| >> 162 CMake Error at coreneuron/CMakeLists.txt:186 (add_library): | |
| 163 Target "coreneuron" links to target "CUDA::cudart" but the target | |
| was not | |
| 164 found. Perhaps a find_package() call is missing for an IMPORTED | |
| target, or | |
| 165 an ALIAS target is missing? | |
| 166 | |
| 167 | |
| 168 -- Generating done | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106270/_/spack-build/spack-stage-coreneuron-develop-uwxc42nfcqke5zm7ua5buzwzhxpumg4i/spack-build-out.txt | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106270/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106270/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Fri Dec 10 09:08:44 2021 | |
| Hits: 6 / 6 (100.0 %) | |
| Direct: 1 / 6 (16.67 %) | |
| Preprocessed: 5 / 5 (100.0 %) | |
| Misses: 0 | |
| Direct: 5 | |
| Preprocessed: 0 | |
| Uncacheable: 10 | |
| Primary storage: | |
| Hits: 7 / 12 (58.33 %) | |
| Misses: 5 | |
| Cache size (GB): 0.51 / 0.51 (98.70 %) | |
| Files: 19308 | |
| Uncacheable: | |
| Called for linking: 7 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 1 | |
| [32;1m$ exit ${num_failures}[0;m | |
| srun: error: r1i7n22: task 0: Exited with exit code 1 | |
| section_end:1639123725:step_script [0Ksection_start:1639123725:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=42365 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=106270 responseStatus[0;m=201 Created token[0;m=YzA5YR2M | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=42395 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=106270 responseStatus[0;m=201 Created token[0;m=YzA5YR2M | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=42419 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=106270 responseStatus[0;m=201 Created token[0;m=YzA5YR2M | |
| section_end:1639123726:upload_artifacts_on_failure [0Ksection_start:1639123726:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1639123727:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| Log was not fetched because job had status: skipped |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1639123249:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1639123249:resolve_secrets [0Ksection_start:1639123249:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor641452674, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 28723, build ref affbc25e30b4b6c572b1dae49fab140c6c1c18fd, job ID 106269 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106269 | |
| A slurm job will be created with name GL_J106269_PROD_P112_CP1_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 123418 | |
| job state: R | |
| section_end:1639123251:prepare_executor [0Ksection_start:1639123251:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1639123253:prepare_script [0Ksection_start:1639123253:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1639123254:get_sources [0Ksection_start:1639123254:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for nmodl-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=35754 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1639123261:restore_cache [0Ksection_start:1639123261:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (106268)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=35919 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=106268 responseStatus[0;m=200 OK token[0;m=13aC6UyG | |
| section_end:1639123261:download_artifacts [0Ksection_start:1639123261:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106269/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106269/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106269/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106269/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106269/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for nmodl is branch="hackathon_main" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/nmodl/package.py b/var/spack/repos/builtin/packages/nmodl/package.py | |
| index 1d2bd80..3fbef78 100644 | |
| --- a/var/spack/repos/builtin/packages/nmodl/package.py | |
| +++ b/var/spack/repos/builtin/packages/nmodl/package.py | |
| @@ -13,7 +13,7 @@ class Nmodl(CMakePackage): | |
| url = "https://github.com/BlueBrain/nmodl.git" | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| - version('develop', branch='master', submodules=True) | |
| + version('develop', submodules=True, branch="hackathon_main") | |
| # 0.3.0 > 0.3b > 0.3 as far as Spack is concerned | |
| version('0.3.0', tag='0.3', preferred=True) | |
| version('0.3b', commit="c30ea06", submodules=True) | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%nvhpc~legacy-unit ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be nswa6573eazhleffns23ijmh436w7top | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106269/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106269/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Fri Dec 10 09:01:45 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.51 / 0.51 (99.24 %) | |
| Files: 1904 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'nswa6573eazhleffns23ijmh436w7top' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%nvhpc~legacy-unit | |
| - ^bison%gcc | |
| - ^flex%gcc | |
| - ^py-jinja2%gcc | |
| - ^py-pyyaml%gcc | |
| - ^py-sympy%gcc | |
| Concretized | |
| -------------------------------- | |
| - nswa657 nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] yuqhyr2 ^py-setuptools-scm@4.1.2%nvhpc@21.9+toml arch=linux-rhel7-x86_64 | |
| [^] bk3d6wo ^py-toml@0.10.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| ==> Installing py-mpmath-1.1.0-hsn2r4nbqjhzewaw5soovd2t5ud7cpxi | |
| ==> No binary for py-mpmath-1.1.0-hsn2r4nbqjhzewaw5soovd2t5ud7cpxi found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| ==> Installing py-pyyaml-5.3.1-sujyde4lpezqcdg4rwhbpoaratxzarxk | |
| ==> No binary for py-pyyaml-5.3.1-sujyde4lpezqcdg4rwhbpoaratxzarxk found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/b8/b8eac752c5e14d3eca0e6dd9199cd627518cb5ec06add0de9d32baeee6fe645d.tar.gz | |
| ==> py-pyyaml: Executing phase: 'build_ext' | |
| ==> py-pyyaml: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-toml-0.10.0-bk3d6w | |
| ==> Installing py-markupsafe-1.1.1-uu54yden3pmltnbphrqkavx46jvq7xnu | |
| ==> No binary for py-markupsafe-1.1.1-uu54yden3pmltnbphrqkavx46jvq7xnu found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| ==> Installing py-pytz-2020.1-5ytmph6jauaabucz5ftlb3luonjitpyh | |
| ==> No binary for py-pytz-2020.1-5ytmph6jauaabucz5ftlb3luonjitpyh found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/c3/c35965d010ce31b23eeb663ed3cc8c906275d6be1a34393a1d73a41febf4a048.tar.gz | |
| ==> py-pytz: Executing phase: 'build' | |
| ==> py-pytz: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| ==> Installing py-sympy-1.4-oekgd2ou3e7lvizgzw7ztjyx5npcnhjc | |
| ==> No binary for py-sympy-1.4-oekgd2ou3e7lvizgzw7ztjyx5npcnhjc found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-scm-4.1.2-yuqhyr | |
| ==> Installing py-babel-2.7.0-hg7eommvskkocenyvv7wvashro4vnb2o | |
| ==> No binary for py-babel-2.7.0-hg7eommvskkocenyvv7wvashro4vnb2o found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| ==> Installing py-jinja2-2.10.3-ccuqt3mppqfwu2gdnafhdw6kj77bmc2e | |
| ==> No binary for py-jinja2-2.10.3-ccuqt3mppqfwu2gdnafhdw6kj77bmc2e found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| ==> Installing nmodl-develop-nswa6573eazhleffns23ijmh436w7top | |
| ==> No binary for nmodl-develop-nswa6573eazhleffns23ijmh436w7top found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106269/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106269/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Fri Dec 10 09:06:18 2021 | |
| Hits: 126 / 135 (93.33 %) | |
| Direct: 33 / 135 (24.44 %) | |
| Preprocessed: 93 / 102 (91.18 %) | |
| Misses: 9 | |
| Direct: 102 | |
| Preprocessed: 9 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 159 / 270 (58.89 %) | |
| Misses: 111 | |
| Cache size (GB): 0.51 / 0.51 (99.26 %) | |
| Files: 1904 | |
| Cleanups: 4 | |
| Uncacheable: | |
| Called for linking: 26 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1639123579:step_script [0Ksection_start:1639123579:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache nmodl-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=39649 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 2465 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1639123601:archive_cache [0Ksection_start:1639123601:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=39713 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=106269 responseStatus[0;m=201 Created token[0;m=Ned4VzCp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=39735 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=106269 responseStatus[0;m=201 Created token[0;m=Ned4VzCp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=39759 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=106269 responseStatus[0;m=201 Created token[0;m=Ned4VzCp | |
| section_end:1639123603:upload_artifacts_on_success [0Ksection_start:1639123603:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1639123603:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| ! |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1639123226:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1639123226:resolve_secrets [0Ksection_start:1639123226:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor455988273, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 28723, build ref affbc25e30b4b6c572b1dae49fab140c6c1c18fd, job ID 106268 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P28723/J106268 | |
| A slurm job will be created with name GL_J106268_PROD_P112_CP1_C1 | |
| Job parameters: memory=512M, cpus_per_task=1, duration=10:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 123417 | |
| job state: R | |
| section_end:1639123227:prepare_executor [0Ksection_start:1639123227:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1639123229:prepare_script [0Ksection_start:1639123229:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1639123230:get_sources [0Ksection_start:1639123230:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ touch spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${PARSE_GITHUB_PR_DESCRIPTIONS}" == "true" && "${CI_PIPELINE_SOURCE}" == "external_pull_request_event" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| from __future__ import print_function | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print('SPACK_PACKAGE_REF_' + m.group(1).lower() + '=' + ref_type + '="' + m.group(3) + '"') | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ python parse_description.py > spack_clone_variables.env[0;m | |
| [32;1m$ cat spack_clone_variables.env[0;m | |
| SPACK_PACKAGE_REF_nmodl=branch="hackathon_main" | |
| SPACK_PACKAGE_REF_neuron=branch="master" | |
| [32;1m$ fi[0;m | |
| [32;1m$ echo Using ${PWD} as a working directory common to the whole pipeline...[0;m | |
| Using /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P28723/J106268/_ as a working directory common to the whole pipeline... | |
| [32;1m$ SPACK_BRANCH_PARSED=$(sed -n -e "s/^SPACK_PACKAGE_REF_spack=branch=\(['\"]\)\([^\1]\+\)\1/\2/p" spack_clone_variables.env)[0;m | |
| [32;1m$ SPACK_BRANCH=${SPACK_BRANCH_PARSED:-$SPACK_BRANCH}[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ git clone --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Checking out files: 43% (3363/7697) Checking out files: 44% (3387/7697) Checking out files: 45% (3464/7697) Checking out files: 46% (3541/7697) Checking out files: 47% (3618/7697) Checking out files: 48% (3695/7697) Checking out files: 49% (3772/7697) Checking out files: 50% (3849/7697) Checking out files: 51% (3926/7697) Checking out files: 52% (4003/7697) Checking out files: 53% (4080/7697) Checking out files: 54% (4157/7697) Checking out files: 55% (4234/7697) Checking out files: 56% (4311/7697) Checking out files: 57% (4388/7697) Checking out files: 58% (4465/7697) Checking out files: 59% (4542/7697) Checking out files: 60% (4619/7697) Checking out files: 61% (4696/7697) Checking out files: 62% (4773/7697) Checking out files: 63% (4850/7697) Checking out files: 64% (4927/7697) Checking out files: 65% (5004/7697) Checking out files: 66% (5081/7697) Checking out files: 67% (5157/7697) Checking out files: 68% (5234/7697) Checking out files: 69% (5311/7697) Checking out files: 70% (5388/7697) Checking out files: 71% (5465/7697) Checking out files: 72% (5542/7697) Checking out files: 73% (5619/7697) Checking out files: 74% (5696/7697) Checking out files: 75% (5773/7697) Checking out files: 76% (5850/7697) Checking out files: 77% (5927/7697) Checking out files: 78% (6004/7697) Checking out files: 79% (6081/7697) Checking out files: 80% (6158/7697) Checking out files: 81% (6235/7697) Checking out files: 81% (6249/7697) Checking out files: 82% (6312/7697) Checking out files: 83% (6389/7697) Checking out files: 84% (6466/7697) Checking out files: 85% (6543/7697) Checking out files: 86% (6620/7697) Checking out files: 87% (6697/7697) Checking out files: 88% (6774/7697) Checking out files: 89% (6851/7697) Checking out files: 90% (6928/7697) Checking out files: 91% (7005/7697) Checking out files: 92% (7082/7697) Checking out files: 93% (7159/7697) Checking out files: 94% (7236/7697) Checking out files: 95% (7313/7697) Checking out files: 96% (7390/7697) Checking out files: 97% (7467/7697) Checking out files: 98% (7544/7697) Checking out files: 99% (7621/7697) Checking out files: 100% (7697/7697) Checking out files: 100% (7697/7697), done. | |
| [32;1m$ cp /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/config/*.yaml spack/etc/spack[0;m | |
| [32;1m$ SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ spack config get config[0;m | |
| config: | |
| install_tree: | |
| projections: | |
| all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| root: $spack/opt/spack | |
| build_jobs: 36 | |
| ccache: true | |
| template_dirs: | |
| - $spack/share/spack/templates | |
| # Locations where different types of modules should be installed. | |
| module_roots: | |
| tcl: $spack/share/spack/modules | |
| lmod: $spack/share/spack/lmod | |
| build_stage: | |
| - $tempdir/$user/spack-stage | |
| - ~/.spack/stage | |
| # - $spack/var/spack/stage | |
| # Directory in which to run tests and store test results. | |
| # Tests will be stored in directories named by date/time and package | |
| # name/hash. | |
| test_stage: ~/.spack/test | |
| source_cache: $spack/var/spack/cache | |
| misc_cache: ~/.spack/cache | |
| connect_timeout: 10 | |
| verify_ssl: true | |
| suppress_gpg_warnings: false | |
| install_missing_compilers: false | |
| checksum: true | |
| dirty: false | |
| build_language: C | |
| locks: true | |
| concretizer: original | |
| db_lock_timeout: 300 | |
| package_lock_timeout: | |
| shared_linking: rpath | |
| allow_sgid: true | |
| debug: false | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${CI_PIPELINE_SOURCE}" == "pipeline" ]]; then[0;m | |
| section_end:1639123238:step_script [0Ksection_start:1639123238:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=35389 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=106268 responseStatus[0;m=201 Created token[0;m=13aC6UyG | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=35403 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=106268 responseStatus[0;m=201 Created token[0;m=13aC6UyG | |
| section_end:1639123239:upload_artifacts_on_success [0Ksection_start:1639123239:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1639123240:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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