.bundle problem

extconf.rb

# Copied almost verbatim from NArray

require "mkmf"


def have_type(type, header=nil)
  printf "checking for %s... ", type
  STDOUT.flush

  src = <<"SRC"
#include <ruby.h>
SRC


  src << <<"SRC" unless header.nil?
#include <#{header}>
SRC

  r = try_link(src + <<"SRC")
  int main() { return 0; }
  int t() { #{type} a; return 0; }
SRC

  unless r
    print "no\n"
    return false
  end

  $defs.push(format("-DHAVE_%s", type.upcase))

  print "yes\n"

  return true
end

def create_conf_h(file)
  print "creating #{file}\n"
  hfile = open(file, "w")
  for line in $defs
    line =~ /^-D(.*)/
    hfile.printf "#define %s 1\n", $1
  end
  hfile.close
end

if RUBY_VERSION < '1.8'
  alias __install_rb :install_rb
  def install_rb(mfile, dest, srcdir = nil)
    __install_rb(mfile, dest, srcdir)
    archdir = dest.sub(/sitelibdir/,"sitearchdir").sub(/rubylibdir/,"archdir")
    path = ['$(srcdir)/nmatrix.h','nmatrix_config.h']
    path << ['libnmatrix.a'] if /cygwin|mingw/ =~ RUBY_PLATFORM
    for f in path
      mfile.printf "\t@$(RUBY) -r ftools -e 'File::install(ARGV[0], ARGV[1], 0644, true)' %s %s\n", f, archdir
    end
  end
else
  $INSTALLFILES = [['nmatrix.h', '$(archdir)'], ['nmatrix_config.h', '$(archdir)']]
  if /cygwin|mingw/ =~ RUBY_PLATFORM
	 $INSTALLFILES << ['libnmatrix.a', '$(archdir)']
  end
end

if RUBY_VERSION < '1.9.0'
  raise(NotImplementedError, "Sorry, you need Ruby 1.9!")
end


if /cygwin|mingw/ =~ RUBY_PLATFORM
  CONFIG["DLDFLAGS"] << " --output-lib libnmatrix.a"
end

$DEBUG = true
$CFLAGS = ["-Wall -g",$CFLAGS].join(" ")

srcs = %w(
nmatrix
list
dense
dfuncs
)

header = "stdint.h"
unless have_header(header)
  header = "sys/types.h"
  unless have_header(header)
    header = nil
  end
end

have_type("u_int8_t", header)
have_type("uint8_t", header)
have_type("int16_t", header)
have_type("int32_t", header)
have_type("u_int32_t", header)
have_type("uint32_t", header)
have_type("int64_t", header)
have_type("u_int64_t", header)
have_type("uint64_t", header)

$objs = srcs.collect{|i| i+".o"}

create_conf_h("nmatrix_config.h")
create_makefile("nmatrix")

Makefile

# Generated by extconf.rb
SHELL = /bin/sh

# V=0 quiet, V=1 verbose.  other values don't work.
V = 0
Q1 = $(V:1=)
Q = $(Q1:0=@)
n=$(NULLCMD)
ECHO1 = $(V:1=@$n)
ECHO = $(ECHO1:0=@echo)

#### Start of system configuration section. ####

srcdir = .
topdir = /Users/jwoods/.rvm/rubies/ruby-1.9.3-p0/include/ruby-1.9.1
hdrdir = /Users/jwoods/.rvm/rubies/ruby-1.9.3-p0/include/ruby-1.9.1
arch_hdrdir = /Users/jwoods/.rvm/rubies/ruby-1.9.3-p0/include/ruby-1.9.1/$(arch)
VPATH = $(srcdir):$(arch_hdrdir)/ruby:$(hdrdir)/ruby
prefix = $(DESTDIR)/Users/jwoods/.rvm/rubies/ruby-1.9.3-p0
rubylibprefix = $(libdir)/$(RUBY_BASE_NAME)
exec_prefix = $(prefix)
vendorhdrdir = $(rubyhdrdir)/vendor_ruby
sitehdrdir = $(rubyhdrdir)/site_ruby
rubyhdrdir = $(includedir)/$(RUBY_BASE_NAME)-$(ruby_version)
vendordir = $(rubylibprefix)/vendor_ruby
sitedir = $(rubylibprefix)/site_ruby
ridir = $(datarootdir)/$(RI_BASE_NAME)
mandir = $(datarootdir)/man
localedir = $(datarootdir)/locale
libdir = $(exec_prefix)/lib
psdir = $(docdir)
pdfdir = $(docdir)
dvidir = $(docdir)
htmldir = $(docdir)
infodir = $(datarootdir)/info
docdir = $(datarootdir)/doc/$(PACKAGE)
oldincludedir = $(DESTDIR)/usr/include
includedir = $(prefix)/include
localstatedir = $(prefix)/var
sharedstatedir = $(prefix)/com
sysconfdir = $(prefix)/etc
datadir = $(datarootdir)
datarootdir = $(prefix)/share
libexecdir = $(exec_prefix)/libexec
sbindir = $(exec_prefix)/sbin
bindir = $(exec_prefix)/bin
rubylibdir = $(rubylibprefix)/$(ruby_version)
archdir = $(rubylibdir)/$(arch)
sitelibdir = $(sitedir)/$(ruby_version)
sitearchdir = $(sitelibdir)/$(sitearch)
vendorlibdir = $(vendordir)/$(ruby_version)
vendorarchdir = $(vendorlibdir)/$(sitearch)

NULLCMD = :

CC = /usr/bin/gcc-4.2
CXX = g++-4.2
LIBRUBY = $(LIBRUBY_SO)
LIBRUBY_A = lib$(RUBY_SO_NAME)-static.a
LIBRUBYARG_SHARED = -l$(RUBY_SO_NAME)
LIBRUBYARG_STATIC = -l$(RUBY_SO_NAME)-static
OUTFLAG = -o 
COUTFLAG = -o 

RUBY_EXTCONF_H = 
cflags   =  $(optflags) $(debugflags) $(warnflags)
optflags = -O3
debugflags = -ggdb
warnflags = -Wextra -Wno-unused-parameter -Wno-parentheses -Wno-long-long -Wno-missing-field-initializers -Wpointer-arith -Wwrite-strings -Wdeclaration-after-statement -Wshorten-64-to-32 -Wimplicit-function-declaration
CFLAGS   = -fno-common -Wall -g $(cflags)  -fno-common -pipe 
INCFLAGS = -I. -I$(arch_hdrdir) -I$(hdrdir)/ruby/backward -I$(hdrdir) -I$(srcdir)
DEFS     = 
CPPFLAGS = -DHAVE_STDINT_H -DHAVE_U_INT8_T -DHAVE_UINT8_T -DHAVE_INT16_T -DHAVE_INT32_T -DHAVE_U_INT32_T -DHAVE_UINT32_T -DHAVE_INT64_T -DHAVE_U_INT64_T -DHAVE_UINT64_T -D_XOPEN_SOURCE -D_DARWIN_C_SOURCE $(DEFS) $(cppflags)
CXXFLAGS = $(CFLAGS) $(cxxflags)
ldflags  = -L. 
dldflags = -Wl,-undefined,dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-flat_namespace
ARCH_FLAG = 
DLDFLAGS = $(ldflags) $(dldflags)
LDSHARED = $(CC) -dynamic -bundle
LDSHAREDXX = $(CXX) -dynamic -bundle
AR = ar
EXEEXT = 

RUBY_BASE_NAME = ruby
RUBY_INSTALL_NAME = ruby
RUBY_SO_NAME = ruby.1.9.1
arch = x86_64-darwin11.2.0
sitearch = $(arch)
ruby_version = 1.9.1
ruby = /Users/jwoods/.rvm/rubies/ruby-1.9.3-p0/bin/ruby
RUBY = $(ruby)
RM = rm -f
RM_RF = $(RUBY) -run -e rm -- -rf
RMDIRS = rmdir -p
MAKEDIRS = mkdir -p
INSTALL = /usr/bin/install -c
INSTALL_PROG = $(INSTALL) -m 0755
INSTALL_DATA = $(INSTALL) -m 644
COPY = cp

#### End of system configuration section. ####

preload = 

libpath = . $(libdir)
LIBPATH =  -L. -L$(libdir)
DEFFILE = 

CLEANFILES = mkmf.log
DISTCLEANFILES = 
DISTCLEANDIRS = 

extout = 
extout_prefix = 
target_prefix = 
LOCAL_LIBS = 
LIBS = $(LIBRUBYARG_SHARED)  -lpthread -ldl -lobjc 
SRCS = nmatrix.c list.c dense.c dfuncs.c
OBJS = nmatrix.o list.o dense.o dfuncs.o
TARGET = nmatrix
DLLIB = $(TARGET).bundle
EXTSTATIC = 
STATIC_LIB = 

BINDIR        = $(bindir)
RUBYCOMMONDIR = $(sitedir)$(target_prefix)
RUBYLIBDIR    = $(sitelibdir)$(target_prefix)
RUBYARCHDIR   = $(sitearchdir)$(target_prefix)
HDRDIR        = $(rubyhdrdir)/ruby$(target_prefix)
ARCHHDRDIR    = $(rubyhdrdir)/$(arch)/ruby$(target_prefix)

TARGET_SO     = $(DLLIB)
CLEANLIBS     = $(TARGET).bundle 
CLEANOBJS     = *.o  *.bak

all:    $(DLLIB)
static: $(STATIC_LIB)
.PHONY: all install static install-so install-rb
.PHONY: clean clean-so clean-rb

clean-rb-default::
clean-rb::
clean-so::
clean: clean-so clean-rb-default clean-rb
		@-$(RM) $(CLEANLIBS) $(CLEANOBJS) $(CLEANFILES)

distclean-rb-default::
distclean-rb::
distclean-so::
distclean: clean distclean-so distclean-rb-default distclean-rb
		@-$(RM) Makefile $(RUBY_EXTCONF_H) conftest.* mkmf.log
		@-$(RM) core ruby$(EXEEXT) *~ $(DISTCLEANFILES)
		@-$(RMDIRS) $(DISTCLEANDIRS) 2> /dev/null || true

realclean: distclean
install: install-so install-rb

install-so: $(RUBYARCHDIR)
install-so: $(RUBYARCHDIR)/$(DLLIB)
$(RUBYARCHDIR)/$(DLLIB): $(DLLIB)
	@-$(MAKEDIRS) $(@D)
	$(INSTALL_PROG) $(DLLIB) $(@D)
install-rb: pre-install-rb install-rb-default
install-rb-default: pre-install-rb-default
pre-install-rb: Makefile
pre-install-rb-default: Makefile
pre-install-rb-default:
	$(ECHO) installing default nmatrix libraries
pre-install-rb: $(RUBYARCHDIR)
install-rb: $(RUBYARCHDIR)/nmatrix.h $(RUBYARCHDIR)
$(RUBYARCHDIR)/nmatrix.h: $(srcdir)/nmatrix.h
	$(Q) $(INSTALL_DATA) $(srcdir)/nmatrix.h $(@D)
install-rb: $(RUBYARCHDIR)/nmatrix_config.h $(RUBYARCHDIR)
$(RUBYARCHDIR)/nmatrix_config.h: $(srcdir)/nmatrix_config.h
	$(Q) $(INSTALL_DATA) $(srcdir)/nmatrix_config.h $(@D)
pre-install-rb:
	$(ECHO) installing nmatrix libraries
$(RUBYARCHDIR):
	$(Q) $(MAKEDIRS) $@

site-install: site-install-so site-install-rb
site-install-so: install-so
site-install-rb: install-rb

.SUFFIXES: .c .m .cc .mm .cxx .cpp .C .o

.cc.o:
	$(ECHO) compiling $(<)
	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<

.mm.o:
	$(ECHO) compiling $(<)
	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<

.cxx.o:
	$(ECHO) compiling $(<)
	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<

.cpp.o:
	$(ECHO) compiling $(<)
	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<

.C.o:
	$(ECHO) compiling $(<)
	$(Q) $(CXX) $(INCFLAGS) $(CPPFLAGS) $(CXXFLAGS) $(COUTFLAG)$@ -c $<

.c.o:
	$(ECHO) compiling $(<)
	$(Q) $(CC) $(INCFLAGS) $(CPPFLAGS) $(CFLAGS) $(COUTFLAG)$@ -c $<

.m.o:
	$(ECHO) compiling $(<)
	$(Q) $(CC) $(INCFLAGS) $(CPPFLAGS) $(CFLAGS) $(COUTFLAG)$@ -c $<

$(DLLIB): $(OBJS) Makefile
	$(ECHO) linking shared-object $(DLLIB)
	@-$(RM) $(@)
	$(Q) $(LDSHARED) -o $@ $(OBJS) $(LIBPATH) $(DLDFLAGS) $(LOCAL_LIBS) $(LIBS)



###
dtypes.h: generator.rb
	$(RUBY) -I$(srcdir) $(srcdir)/generator.rb

dtypes.c: generator.rb
	$(RUBY) -I$(srcdir) $(srcdir)/generator.rb

$(DLLIB): $(OBJS) Makefile dtypes.h dtypes.c
	$(ECHO) linking shared-object $(DLLIB)
	@-$(RM) $(@)
	$(Q) $(LDSHARED) -o $@ $(OBJS) $(LIBPATH) $(DLDFLAGS) $(LOCAL_LIBS) $(LIBS)