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@neggert
Created April 16, 2012 14:49
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Function for plotting histogram with error bars
import matplotlib.pyplot as plt
import numpy as np
import inspect
def hist_errorbars( data, xerrs=True, *args, **kwargs) :
"""Plot a histogram with error bars. Accepts any kwarg accepted by either numpy.histogram or pyplot.errorbar"""
# pop off normed kwarg, since we want to handle it specially
norm = False
if 'normed' in kwargs.keys() :
norm = kwargs.pop('normed')
# retrieve the kwargs for numpy.histogram
histkwargs = {}
for key, value in kwargs.iteritems() :
if key in inspect.getargspec(np.histogram).args :
histkwargs[key] = value
histvals, binedges = np.histogram( data, **histkwargs )
yerrs = np.sqrt(histvals)
if norm :
nevents = float(sum(histvals))
binwidth = (binedges[1]-binedges[0])
histvals = histvals/nevents/binwidth
yerrs = yerrs/nevents/binwidth
bincenters = (binedges[1:]+binedges[:-1])/2
if xerrs :
xerrs = (binedges[1]-binedges[0])/2
else :
xerrs = None
# retrieve the kwargs for errorbar
ebkwargs = {}
for key, value in kwargs.iteritems() :
if key in inspect.getargspec(plt.errorbar).args :
histkwargs[key] = value
out = plt.errorbar(bincenters, histvals, yerrs, xerrs, fmt=".", **ebkwargs)
if 'log' in kwargs.keys() :
if kwargs['log'] :
plt.yscale('log')
if 'range' in kwargs.keys() :
plt.xlim(*kwargs['range'])
return out
@neggert
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neggert commented Apr 16, 2012

Example of the output:

@wiso
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wiso commented Jun 16, 2016

on L38 histkwargs -> ebkwargs

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