Created
March 9, 2022 12:41
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/42032 (:no_entry:) running on GitHub PR BlueBrain/CoreNeuron#772.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646825729:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646825729:resolve_secrets [0Ksection_start:1646825729:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor658699611, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179966 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179966_PROD_P112_CP6_C9 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319491 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179966_PROD_P112_CP6_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319491 --cpus-per-task=8 --mem=76G | |
| section_end:1646825756:prepare_executor [0Ksection_start:1646825756:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n31 via bbpv1.epfl.ch... | |
| section_end:1646825758:prepare_script [0Ksection_start:1646825758:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646825759:get_sources [0Ksection_start:1646825759:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=197610 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646825762:restore_cache [0Ksection_start:1646825762:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (179959)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=197682 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179959 responseStatus[0;m=200 OK token[0;m=-7SAWh_S | |
| section_end:1646825763:download_artifacts [0Ksection_start:1646825763:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179966/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179966/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179966/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179966/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179966/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179966_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319491/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319491/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:36:30 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.27 / 0.51 (52.01 %) | |
| Files: 5470 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'hsyhen5wbojr4dsx5rf32wndj3dpm5nb' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - hsyhen5 coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] 3narjkw ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] nfrzrlo ^libsonata-report@1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] e7w5nez ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] wk3uenv ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] f27a7nn ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-wk3uen | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1-nfrzrl | |
| ==> Installing coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| ==> No binary for coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb found: installing from source | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| Fetch: 4.71s. Build: 47.24s. Total: 51.95s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_intel-2021.4.0-skylake/coreneuron-develop-hsyhen | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319491/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319491/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:38:09 2022 | |
| Hits: 109 / 115 (94.78 %) | |
| Direct: 91 / 116 (78.45 %) | |
| Preprocessed: 18 / 25 (72.00 %) | |
| Misses: 6 | |
| Direct: 25 | |
| Preprocessed: 7 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 200 / 232 (86.21 %) | |
| Misses: 32 | |
| Cache size (GB): 0.27 / 0.51 (52.17 %) | |
| Files: 5482 | |
| Uncacheable: | |
| Called for linking: 14 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646825893:step_script [0Ksection_start:1646825893:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199739 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646825904:archive_cache [0Ksection_start:1646825904:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199867 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179966 responseStatus[0;m=201 Created token[0;m=2_MWRqfN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199906 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179966 responseStatus[0;m=201 Created token[0;m=2_MWRqfN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199941 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179966 responseStatus[0;m=201 Created token[0;m=2_MWRqfN | |
| section_end:1646825906:upload_artifacts_on_success [0Ksection_start:1646825906:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646825907:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646825729:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646825729:resolve_secrets [0Ksection_start:1646825729:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor152483201, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179963 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179963_PROD_P112_CP5_C8 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319492 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179963_PROD_P112_CP5_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319492 --cpus-per-task=8 --mem=76G | |
| section_end:1646825756:prepare_executor [0Ksection_start:1646825756:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646825760:prepare_script [0Ksection_start:1646825760:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646825761:get_sources [0Ksection_start:1646825761:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc:unified-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=296402 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646825764:restore_cache [0Ksection_start:1646825764:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (179959)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=296544 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179959 responseStatus[0;m=200 OK token[0;m=-7SAWh_S | |
| section_end:1646825765:download_artifacts [0Ksection_start:1646825765:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179963/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179963/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179963/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179963/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179963/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179963_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+unified+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 5u3hb5563fiewjkvz6z6mzftkoy4lmwk | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319492/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319492/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:36:36 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.16 / 0.51 (30.70 %) | |
| Files: 6114 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '5u3hb5563fiewjkvz6z6mzftkoy4lmwk' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests+unified build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - 5u3hb55 coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests+unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ocv5kkj ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] bfwiaoz ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - 55wtnz6 ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] wd5k5wi ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| - xzdnug7 ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake | |
| [^] yjmlhh2 ^hpe-mpi@2.25.hmpt%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] r5wt3dh ^libsonata-report@1.1%nvhpc@22.2~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ytku65t ^hdf5@1.10.7%nvhpc@22.2+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kzqllej ^pkgconf@1.8.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] tayew4i ^zlib@1.2.11%nvhpc@22.2+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] 6bohspr ^spdlog@1.9.2%nvhpc@22.2~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ij6isvr ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] anlnosv ^python@3.9.7%nvhpc@22.2+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 4mciih7 ^reportinglib@2.5.6%nvhpc@22.2~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j) | |
| ==> cuda@11.6.0 : has external module in ['cuda/11.6.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-34qjta (external cuda-11.6.0-wd5k5wioelahwux72y3g3bytolebtkoh) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-yjmlhh2qrwgth4mrrn3f72mynalveqr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/pkgconf-1.8.0-kzqlle | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-tayew4indju53v3ylyin7shvfpp5genf) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-anlnosvxv5pmzlxnwx77gmjmmlsmov7b) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/spdlog-1.9.2-6bohsp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/reportinglib-2.5.6-4mciih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/hdf5-1.10.7-ytku65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libsonata-report-1.1-r5wt3d | |
| ==> Installing coreneuron-develop-5u3hb5563fiewjkvz6z6mzftkoy4lmwk | |
| ==> No binary for coreneuron-develop-5u3hb5563fiewjkvz6z6mzftkoy4lmwk found: installing from source | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-5u3hb5563fiewjkvz6z6mzftkoy4lmwk | |
| Fetch: 4.82s. Build: 2m 34.31s. Total: 2m 39.13s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/coreneuron-develop-5u3hb5 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319492/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319492/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:40:16 2022 | |
| Hits: 109 / 118 (92.37 %) | |
| Direct: 90 / 118 (76.27 %) | |
| Preprocessed: 19 / 28 (67.86 %) | |
| Misses: 9 | |
| Direct: 28 | |
| Preprocessed: 9 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 200 / 236 (84.75 %) | |
| Misses: 36 | |
| Cache size (GB): 0.16 / 0.51 (30.77 %) | |
| Files: 6132 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646826018:step_script [0Ksection_start:1646826018:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc:unified-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=3783 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc%3Aunified-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646826027:archive_cache [0Ksection_start:1646826027:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=4797 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179963 responseStatus[0;m=201 Created token[0;m=HHCPVuHs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=4861 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179963 responseStatus[0;m=201 Created token[0;m=HHCPVuHs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=4942 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179963 responseStatus[0;m=201 Created token[0;m=HHCPVuHs | |
| section_end:1646826029:upload_artifacts_on_success [0Ksection_start:1646826029:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826030:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646825728:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646825728:resolve_secrets [0Ksection_start:1646825728:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor010153015, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179962 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179962_PROD_P112_CP4_C6 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319493 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179962_PROD_P112_CP4_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319493 --cpus-per-task=8 --mem=76G | |
| section_end:1646825756:prepare_executor [0Ksection_start:1646825756:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646825759:prepare_script [0Ksection_start:1646825759:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646825760:get_sources [0Ksection_start:1646825760:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=296319 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646825764:restore_cache [0Ksection_start:1646825764:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (179959)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=296471 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179959 responseStatus[0;m=200 OK token[0;m=-7SAWh_S | |
| section_end:1646825764:download_artifacts [0Ksection_start:1646825764:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179962/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179962/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179962/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179962/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179962/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179962_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be qvmfnnxhw57tyce665xfpgrivex6jdyr | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319493/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319493/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:36:36 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.19 / 0.51 (37.80 %) | |
| Files: 7487 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'qvmfnnxhw57tyce665xfpgrivex6jdyr' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - qvmfnnx coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ocv5kkj ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] bfwiaoz ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - 55wtnz6 ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] wd5k5wi ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| - xzdnug7 ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake | |
| [^] yjmlhh2 ^hpe-mpi@2.25.hmpt%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] r5wt3dh ^libsonata-report@1.1%nvhpc@22.2~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ytku65t ^hdf5@1.10.7%nvhpc@22.2+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kzqllej ^pkgconf@1.8.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] tayew4i ^zlib@1.2.11%nvhpc@22.2+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] 6bohspr ^spdlog@1.9.2%nvhpc@22.2~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ij6isvr ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] anlnosv ^python@3.9.7%nvhpc@22.2+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 4mciih7 ^reportinglib@2.5.6%nvhpc@22.2~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j) | |
| ==> cuda@11.6.0 : has external module in ['cuda/11.6.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-34qjta (external cuda-11.6.0-wd5k5wioelahwux72y3g3bytolebtkoh) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-yjmlhh2qrwgth4mrrn3f72mynalveqr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/pkgconf-1.8.0-kzqlle | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-tayew4indju53v3ylyin7shvfpp5genf) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-anlnosvxv5pmzlxnwx77gmjmmlsmov7b) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/spdlog-1.9.2-6bohsp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/reportinglib-2.5.6-4mciih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/hdf5-1.10.7-ytku65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libsonata-report-1.1-r5wt3d | |
| ==> Installing coreneuron-develop-qvmfnnxhw57tyce665xfpgrivex6jdyr | |
| ==> No binary for coreneuron-develop-qvmfnnxhw57tyce665xfpgrivex6jdyr found: installing from source | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-qvmfnnxhw57tyce665xfpgrivex6jdyr | |
| Fetch: 4.78s. Build: 2m 54.13s. Total: 2m 58.91s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/coreneuron-develop-qvmfnn | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319493/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319493/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:40:56 2022 | |
| Hits: 109 / 118 (92.37 %) | |
| Direct: 90 / 118 (76.27 %) | |
| Preprocessed: 19 / 28 (67.86 %) | |
| Misses: 9 | |
| Direct: 28 | |
| Preprocessed: 9 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 200 / 236 (84.75 %) | |
| Misses: 36 | |
| Cache size (GB): 0.19 / 0.51 (37.88 %) | |
| Files: 7505 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646826057:step_script [0Ksection_start:1646826057:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=6830 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646826065:archive_cache [0Ksection_start:1646826065:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7045 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179962 responseStatus[0;m=201 Created token[0;m=BnVZjzKN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7085 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179962 responseStatus[0;m=201 Created token[0;m=BnVZjzKN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7163 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179962 responseStatus[0;m=201 Created token[0;m=BnVZjzKN | |
| section_end:1646826067:upload_artifacts_on_success [0Ksection_start:1646826067:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826068:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826010:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826010:resolve_secrets [0Ksection_start:1646826010:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor077711350, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179967 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179967_PROD_P112_CP11_C13 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319560 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179967_PROD_P112_CP11_C13 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319560 --cpus-per-task=8 --mem=76G | |
| section_end:1646826033:prepare_executor [0Ksection_start:1646826033:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646826035:prepare_script [0Ksection_start:1646826035:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826036:get_sources [0Ksection_start:1646826036:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=5631 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646826039:restore_cache [0Ksection_start:1646826039:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (179961)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=5710 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179961 responseStatus[0;m=200 OK token[0;m=8y7dxwFF | |
| section_end:1646826040:download_artifacts [0Ksection_start:1646826040:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179967/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179967/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179967/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179967/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179967/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179967_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +nmodl+tests~legacy-unit build_type=Debug ^hpe-mpi%gcc ^/cnhmkfzsucqnmy6dfxyfikno2yj57grf | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be f2bfytl2xzstchvaem4gflxln4r6z4cz | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319560/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319560/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:41:05 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.30 / 0.51 (58.02 %) | |
| Files: 6752 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'f2bfytl2xzstchvaem4gflxln4r6z4cz' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+nmodl+tests build_type=Debug | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - f2bfytl coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vutuzbn ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [+] cnhmkfz ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] xtett6q ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf | |
| ==> Installing coreneuron-develop-f2bfytl2xzstchvaem4gflxln4r6z4cz | |
| ==> No binary for coreneuron-develop-f2bfytl2xzstchvaem4gflxln4r6z4cz found: installing from source | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-f2bfytl2xzstchvaem4gflxln4r6z4cz | |
| Fetch: 4.78s. Build: 46.47s. Total: 51.26s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_intel-2021.4.0-skylake/coreneuron-develop-f2bfyt | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319560/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319560/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:42:52 2022 | |
| Hits: 88 / 94 (93.62 %) | |
| Direct: 78 / 95 (82.11 %) | |
| Preprocessed: 10 / 17 (58.82 %) | |
| Misses: 6 | |
| Direct: 17 | |
| Preprocessed: 7 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 167 / 190 (87.89 %) | |
| Misses: 23 | |
| Cache size (GB): 0.30 / 0.51 (58.19 %) | |
| Files: 6772 | |
| Uncacheable: | |
| Called for linking: 12 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646826173:step_script [0Ksection_start:1646826173:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=13735 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646826186:archive_cache [0Ksection_start:1646826186:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14235 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179967 responseStatus[0;m=201 Created token[0;m=2FX3PAsd | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14280 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179967 responseStatus[0;m=201 Created token[0;m=2FX3PAsd | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14329 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179967 responseStatus[0;m=201 Created token[0;m=2FX3PAsd | |
| section_end:1646826188:upload_artifacts_on_success [0Ksection_start:1646826188:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826188:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826009:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826009:resolve_secrets [0Ksection_start:1646826009:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor828516132, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179965 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179965_PROD_P112_CP10_C12 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319559 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179965_PROD_P112_CP10_C12 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319559 --cpus-per-task=8 --mem=76G | |
| section_end:1646826033:prepare_executor [0Ksection_start:1646826033:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n31 via bbpv1.epfl.ch... | |
| section_end:1646826035:prepare_script [0Ksection_start:1646826035:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826036:get_sources [0Ksection_start:1646826036:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200603 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646826039:restore_cache [0Ksection_start:1646826039:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (179961)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200679 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179961 responseStatus[0;m=200 OK token[0;m=8y7dxwFF | |
| section_end:1646826039:download_artifacts [0Ksection_start:1646826039:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179965/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179965/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179965/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179965/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179965/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179965_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl~openmp+gpu+tests~legacy-unit+sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/cnhmkfzsucqnmy6dfxyfikno2yj57grf | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be clohwtjjwrfpo4z4oreptyb2jbe3wrcs | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319559/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319559/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:41:05 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.22 / 0.51 (43.68 %) | |
| Files: 8061 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'clohwtjjwrfpo4z4oreptyb2jbe3wrcs' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl~openmp+sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - clohwtj coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ocv5kkj ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] bfwiaoz ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] wd5k5wi ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| - xzdnug7 ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vutuzbn ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ij6isvr ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [+] cnhmkfz ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] xtett6q ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> cuda@11.6.0 : has external module in ['cuda/11.6.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-34qjta (external cuda-11.6.0-wd5k5wioelahwux72y3g3bytolebtkoh) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf | |
| ==> Installing coreneuron-develop-clohwtjjwrfpo4z4oreptyb2jbe3wrcs | |
| ==> No binary for coreneuron-develop-clohwtjjwrfpo4z4oreptyb2jbe3wrcs found: installing from source | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-clohwtjjwrfpo4z4oreptyb2jbe3wrcs | |
| Fetch: 4.43s. Build: 3m 43.01s. Total: 3m 47.44s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/coreneuron-develop-clohwt | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319559/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319559/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:45:52 2022 | |
| Hits: 88 / 96 (91.67 %) | |
| Direct: 78 / 96 (81.25 %) | |
| Preprocessed: 10 / 18 (55.56 %) | |
| Misses: 8 | |
| Direct: 18 | |
| Preprocessed: 8 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 167 / 192 (86.98 %) | |
| Misses: 25 | |
| Cache size (GB): 0.22 / 0.51 (43.78 %) | |
| Files: 8086 | |
| Uncacheable: | |
| Called for linking: 13 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646826353:step_script [0Ksection_start:1646826353:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=203485 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646826364:archive_cache [0Ksection_start:1646826364:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=203567 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179965 responseStatus[0;m=201 Created token[0;m=atY9Zsk4 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=203606 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179965 responseStatus[0;m=201 Created token[0;m=atY9Zsk4 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=203649 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179965 responseStatus[0;m=201 Created token[0;m=atY9Zsk4 | |
| section_end:1646826366:upload_artifacts_on_success [0Ksection_start:1646826366:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826366:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826009:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826009:resolve_secrets [0Ksection_start:1646826009:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor779224482, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179964 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179964_PROD_P112_CP2_C4 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319561 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179964_PROD_P112_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319561 --cpus-per-task=8 --mem=76G | |
| section_end:1646826033:prepare_executor [0Ksection_start:1646826033:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n31 via bbpv1.epfl.ch... | |
| section_end:1646826035:prepare_script [0Ksection_start:1646826035:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826036:get_sources [0Ksection_start:1646826036:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=44161 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646826039:restore_cache [0Ksection_start:1646826039:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (179961)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=44270 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179961 responseStatus[0;m=200 OK token[0;m=8y7dxwFF | |
| section_end:1646826039:download_artifacts [0Ksection_start:1646826039:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179964/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179964/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179964/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179964/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179964/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179964_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl+openmp+gpu+tests~legacy-unit~sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/cnhmkfzsucqnmy6dfxyfikno2yj57grf | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be jnp6ftwa2yzkkhnwk6ebarxcp5sqkwtt | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319561/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319561/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:41:06 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.24 / 0.51 (46.00 %) | |
| Files: 8623 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'jnp6ftwa2yzkkhnwk6ebarxcp5sqkwtt' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl+openmp~sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - jnp6ftw coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ocv5kkj ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] bfwiaoz ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] wd5k5wi ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| - xzdnug7 ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vutuzbn ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ij6isvr ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [+] cnhmkfz ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] xtett6q ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> cuda@11.6.0 : has external module in ['cuda/11.6.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-34qjta (external cuda-11.6.0-wd5k5wioelahwux72y3g3bytolebtkoh) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf | |
| ==> Installing coreneuron-develop-jnp6ftwa2yzkkhnwk6ebarxcp5sqkwtt | |
| ==> No binary for coreneuron-develop-jnp6ftwa2yzkkhnwk6ebarxcp5sqkwtt found: installing from source | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-jnp6ftwa2yzkkhnwk6ebarxcp5sqkwtt | |
| Fetch: 4.52s. Build: 3m 29.74s. Total: 3m 34.26s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/coreneuron-develop-jnp6ft | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319561/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319561/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:45:57 2022 | |
| Hits: 89 / 98 (90.82 %) | |
| Direct: 80 / 98 (81.63 %) | |
| Preprocessed: 9 / 18 (50.00 %) | |
| Misses: 9 | |
| Direct: 18 | |
| Preprocessed: 9 | |
| Uncacheable: 17 | |
| Primary storage: | |
| Hits: 169 / 196 (86.22 %) | |
| Misses: 27 | |
| Cache size (GB): 0.24 / 0.51 (46.10 %) | |
| Files: 8649 | |
| Uncacheable: | |
| Called for linking: 14 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646826358:step_script [0Ksection_start:1646826358:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=49122 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aomp-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646826369:archive_cache [0Ksection_start:1646826369:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=49201 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179964 responseStatus[0;m=201 Created token[0;m=PrgH_RpU | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=49239 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179964 responseStatus[0;m=201 Created token[0;m=PrgH_RpU | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=49283 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179964 responseStatus[0;m=201 Created token[0;m=PrgH_RpU | |
| section_end:1646826370:upload_artifacts_on_success [0Ksection_start:1646826370:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826371:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646825910:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646825910:resolve_secrets [0Ksection_start:1646825910:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor949249448, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179971 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179971_PROD_P112_CP6_C1 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319552 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179971_PROD_P112_CP6_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319552 --cpus-per-task=8 --mem=76G | |
| section_end:1646825940:prepare_executor [0Ksection_start:1646825940:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646825944:prepare_script [0Ksection_start:1646825944:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646825945:get_sources [0Ksection_start:1646825945:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=639 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646825952:restore_cache [0Ksection_start:1646825952:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (179966)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=1276 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179966 responseStatus[0;m=200 OK token[0;m=2_MWRqfN | |
| section_end:1646825953:download_artifacts [0Ksection_start:1646825953:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179971/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179971/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179971/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179971/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179971/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179971_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/hsyhen5wbojr4dsx5rf32wndj3dpm5nb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 47kwkdqbfahzhd6mgo3d7lvidjenlcwo | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319552/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319552/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:40:18 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.20 %) | |
| Files: 29264 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '47kwkdqbfahzhd6mgo3d7lvidjenlcwo' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 47kwkdq neuron@develop%intel@2021.4.0+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] hsyhen5 ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 3narjkw ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] nfrzrlo ^libsonata-report@1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] e7w5nez ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] wk3uenv ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] f27a7nn ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] bjxwlfq ^gettext@0.21%intel@2021.4.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] dvyfbbf ^bzip2@1.0.8%intel@2021.4.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ka2cfu4 ^libiconv@1.16%intel@2021.4.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] w3ob7m2 ^libxml2@2.9.12%intel@2021.4.0~python arch=linux-rhel7-skylake | |
| [^] ahg6hq4 ^xz@5.2.5%intel@2021.4.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] q3rwuez ^ncurses@6.2%intel@2021.4.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] 2fli66n ^tar@1.28%intel@2021.4.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] qj3vvxk ^py-mpi4py@3.1.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 5flpilw ^py-setuptools@57.4.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ipsbwzp ^py-numpy@1.19.5%intel@2021.4.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] rl5ojfn ^intel-mkl@2020.4.304%intel@2021.4.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] taxuisw ^py-cython@0.29.24%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] tzmlo5v ^py-pytest@6.2.4%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] d5szgli ^py-attrs@21.2.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] huky5p4 ^py-iniconfig@1.1.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] wli7caj ^py-packaging@21.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 3a3ralt ^py-pyparsing@2.4.7%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] rh6zvev ^py-pluggy@0.13.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] kpwupa3 ^py-setuptools-scm@6.3.2%intel@2021.4.0+toml arch=linux-rhel7-skylake | |
| [^] apu667d ^py-tomli@1.2.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] jesa65u ^py-pip@21.1.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] skrpmyr ^py-py@1.9.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ktthpzx ^py-toml@0.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] tzl5sq5 ^py-pytest-cov@2.8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] zkd7o6d ^py-coverage@5.5%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-wk3uen | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-dvyfbbfdan33i7wyydyeskb3legztopm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libiconv-1.16-ka2cfu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/xz-5.2.5-ahg6hq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-q3rwuezhc2j56kexunypjpejzketozmc) | |
| [+] /usr (external tar-1.28-2fli66nkkv35g34exwd2xifp5w3gtgo6) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-rl5ojfngtc7sffwyz7v6ek6eceq53wed) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-57.4.0-5flpil | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libxml2-2.9.12-w3ob7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1-nfrzrl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-coverage-5.5-zkd7o6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-iniconfig-1.1.1-huky5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-mpi4py-3.1.2-qj3vvx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-cython-0.29.24-taxuis | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-toml-0.10.2-ktthpz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-attrs-21.2.0-d5szgl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pip-21.1.2-jesa65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pyparsing-2.4.7-3a3ral | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/gettext-0.21-bjxwlf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_intel-2021.4.0-skylake/coreneuron-develop-hsyhen | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-numpy-1.19.5-ipsbwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-tomli-1.2.1-apu667 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-packaging-21.0-wli7ca | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-scm-6.3.2-kpwupa | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pluggy-0.13.0-rh6zve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-py-1.9.0-skrpmy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-6.2.4-tzmlo5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-cov-2.8.1-tzl5sq | |
| ==> Installing neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo | |
| ==> No binary for neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo | |
| Fetch: 40.16s. Build: 10m 57.18s. Total: 11m 37.34s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_intel-2021.4.0-skylake/neuron-develop-47kwkd | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319552/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319552/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:53:07 2022 | |
| Hits: 727 / 826 (88.01 %) | |
| Direct: 331 / 835 (39.64 %) | |
| Preprocessed: 396 / 498 (79.52 %) | |
| Misses: 99 | |
| Direct: 504 | |
| Preprocessed: 102 | |
| Uncacheable: 132 | |
| Primary storage: | |
| Hits: 1378 / 1664 (82.81 %) | |
| Misses: 286 | |
| Cache size (GB): 0.46 / 0.51 (90.50 %) | |
| Files: 29459 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 109 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646826791:step_script [0Ksection_start:1646826791:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40055 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646826811:archive_cache [0Ksection_start:1646826811:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40372 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179971 responseStatus[0;m=201 Created token[0;m=LD3u8sHm | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40420 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179971 responseStatus[0;m=201 Created token[0;m=LD3u8sHm | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40463 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179971 responseStatus[0;m=201 Created token[0;m=LD3u8sHm | |
| section_end:1646826812:upload_artifacts_on_success [0Ksection_start:1646826812:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826813:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826072:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826072:resolve_secrets [0Ksection_start:1646826072:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor365123990, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179968 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179968_PROD_P112_CP4_C6 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319564 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179968_PROD_P112_CP4_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319564 --cpus-per-task=8 --mem=76G | |
| section_end:1646826083:prepare_executor [0Ksection_start:1646826083:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646826086:prepare_script [0Ksection_start:1646826086:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826087:get_sources [0Ksection_start:1646826087:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7878 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646826093:restore_cache [0Ksection_start:1646826093:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (179962)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7955 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179962 responseStatus[0;m=200 OK token[0;m=BnVZjzKN | |
| section_end:1646826093:download_artifacts [0Ksection_start:1646826093:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179968/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179968/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179968/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179968/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179968/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179968_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/qvmfnnxhw57tyce665xfpgrivex6jdyr | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be b3uxm6bweygovmzordzjkevzwfwfbb7k | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319564/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319564/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:41:56 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.37 %) | |
| Files: 34893 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'b3uxm6bweygovmzordzjkevzwfwfbb7k' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1%nvhpc@22.2~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%nvhpc@22.2+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%nvhpc@22.2+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%nvhpc@22.2~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%nvhpc@22.2+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%nvhpc@22.2~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - b3uxm6b neuron@develop%nvhpc@22.2+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - ocv5kkj ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| - 55wtnz6 ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] qvmfnnx ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] bfwiaoz ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] wd5k5wi ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| [^] yjmlhh2 ^hpe-mpi@2.25.hmpt%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] r5wt3dh ^libsonata-report@1.1%nvhpc@22.2~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ytku65t ^hdf5@1.10.7%nvhpc@22.2+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kzqllej ^pkgconf@1.8.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] tayew4i ^zlib@1.2.11%nvhpc@22.2+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] 6bohspr ^spdlog@1.9.2%nvhpc@22.2~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] anlnosv ^python@3.9.7%nvhpc@22.2+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 4mciih7 ^reportinglib@2.5.6%nvhpc@22.2~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - xzdnug7 ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake | |
| [^] sr4zfin ^gettext@0.21%nvhpc@22.2+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-skylake | |
| [^] ajb4w4f ^bzip2@1.0.8%nvhpc@22.2~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] 4twyk6r ^libiconv@1.16%nvhpc@22.2 libs=shared,static arch=linux-rhel7-skylake | |
| [^] fpazbku ^libxml2@2.9.12%nvhpc@22.2~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-skylake | |
| [^] qzjkqgu ^xz@5.2.5%nvhpc@22.2~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] w5fylgg ^ncurses@6.2%nvhpc@22.2~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] rbb3dop ^tar@1.28%nvhpc@22.2 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - ij6isvr ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] lpmwkvu ^py-mpi4py@3.1.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] pa37ni6 ^py-setuptools@57.4.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] nlsjsjj ^py-numpy@1.17.5%gcc@11.2.0+blas+lapack patches=cf407c1024b0878c4222dd352aa9dece412073bb15b138243a2893725434c7b6 arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] gabxpj6 ^py-pytest@6.2.4%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] sqvzpxf ^py-attrs@21.2.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] lzjp5na ^py-iniconfig@1.1.1%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] qg4saj7 ^py-packaging@21.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] dqjk4r6 ^py-pyparsing@2.4.7%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] e75mnog ^py-pluggy@0.13.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] rotu6n4 ^py-setuptools-scm@6.3.2%nvhpc@22.2+toml arch=linux-rhel7-skylake | |
| [^] uf52c5s ^py-tomli@1.2.1%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] mj6gtgm ^py-pip@21.1.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] f3hqsi6 ^py-py@1.9.0%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] fto3mxh ^py-toml@0.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] aoyvjwm ^py-pytest-cov@2.8.1%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] yyszraq ^py-coverage@5.5%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] vwedalx ^readline@8.1%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj) | |
| ==> cuda@11.6.0 : has external module in ['cuda/11.6.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-34qjta (external cuda-11.6.0-wd5k5wioelahwux72y3g3bytolebtkoh) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-yjmlhh2qrwgth4mrrn3f72mynalveqr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/pkgconf-1.8.0-kzqlle | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-tayew4indju53v3ylyin7shvfpp5genf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/spdlog-1.9.2-6bohsp | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-anlnosvxv5pmzlxnwx77gmjmmlsmov7b) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-ajb4w4fal7ri67giif6kgx5ks4ammoe3) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libiconv-1.16-4twyk6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/xz-5.2.5-qzjkqg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-w5fylggejc6gf75pltr5gsjdjsthzt3w) | |
| [+] /usr (external tar-1.28-rbb3dopg6uj5eje6nc6qjoywga4vn23d) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-vwedalxfrcxjaatlnup77gynyx6weav5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/reportinglib-2.5.6-4mciih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/hdf5-1.10.7-ytku65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-setuptools-57.4.0-pa37ni | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libxml2-2.9.12-fpazbk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libsonata-report-1.1-r5wt3d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pyparsing-2.4.7-dqjk4r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-iniconfig-1.1.1-lzjp5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-toml-0.10.2-fto3mx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-attrs-21.2.0-sqvzpx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pip-21.1.2-mj6gtg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.17.5-nlsjsj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-coverage-5.5-yyszra | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-mpi4py-3.1.2-lpmwkv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/gettext-0.21-sr4zfi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/coreneuron-develop-qvmfnn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-packaging-21.0-qg4saj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-tomli-1.2.1-uf52c5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-setuptools-scm-6.3.2-rotu6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pluggy-0.13.0-e75mno | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-py-1.9.0-f3hqsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pytest-6.2.4-gabxpj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pytest-cov-2.8.1-aoyvjw | |
| ==> Installing neuron-develop-b3uxm6bweygovmzordzjkevzwfwfbb7k | |
| ==> No binary for neuron-develop-b3uxm6bweygovmzordzjkevzwfwfbb7k found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-b3uxm6bweygovmzordzjkevzwfwfbb7k | |
| Fetch: 13.13s. Build: 18m 30.66s. Total: 18m 43.79s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/neuron-develop-b3uxm6 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319564/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319564/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 13:01:52 2022 | |
| Hits: 728 / 825 (88.24 %) | |
| Direct: 343 / 834 (41.13 %) | |
| Preprocessed: 385 / 485 (79.38 %) | |
| Misses: 97 | |
| Direct: 491 | |
| Preprocessed: 100 | |
| Uncacheable: 123 | |
| Primary storage: | |
| Hits: 1377 / 1662 (82.85 %) | |
| Misses: 285 | |
| Cache size (GB): 0.46 / 0.51 (90.60 %) | |
| Files: 35083 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 100 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646827318:step_script [0Ksection_start:1646827318:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59442 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646827337:archive_cache [0Ksection_start:1646827337:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59699 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179968 responseStatus[0;m=201 Created token[0;m=mYR7bDZN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59740 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179968 responseStatus[0;m=201 Created token[0;m=mYR7bDZN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=59783 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179968 responseStatus[0;m=201 Created token[0;m=mYR7bDZN | |
| section_end:1646827338:upload_artifacts_on_success [0Ksection_start:1646827338:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646827339:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826192:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826192:resolve_secrets [0Ksection_start:1646826192:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor487600746, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179972 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179972_PROD_P112_CP11_C13 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319594 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179972_PROD_P112_CP11_C13 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319594 --cpus-per-task=8 --mem=76G | |
| section_end:1646826288:prepare_executor [0Ksection_start:1646826288:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n31 via bbpv1.epfl.ch... | |
| section_end:1646826290:prepare_script [0Ksection_start:1646826290:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826291:get_sources [0Ksection_start:1646826291:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=47930 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646826297:restore_cache [0Ksection_start:1646826297:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (179967)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=48006 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179967 responseStatus[0;m=200 OK token[0;m=2FX3PAsd | |
| section_end:1646826298:download_artifacts [0Ksection_start:1646826298:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179972/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179972/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179972/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179972/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179972/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179972_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/f2bfytl2xzstchvaem4gflxln4r6z4cz | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 7vuuxvdwm3mams7szrb4snbsppttef4h | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319594/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319594/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:45:30 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.72 %) | |
| Files: 26378 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '7vuuxvdwm3mams7szrb4snbsppttef4h' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 7vuuxvd neuron@develop%intel@2021.4.0+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] f2bfytl ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vutuzbn ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] cnhmkfz ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] xtett6q ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_intel-2021.4.0-skylake/coreneuron-develop-f2bfyt | |
| ==> Installing neuron-develop-7vuuxvdwm3mams7szrb4snbsppttef4h | |
| ==> No binary for neuron-develop-7vuuxvdwm3mams7szrb4snbsppttef4h found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-7vuuxvdwm3mams7szrb4snbsppttef4h | |
| Fetch: 19.32s. Build: 12m 41.36s. Total: 13m 0.67s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_intel-2021.4.0-skylake/neuron-develop-7vuuxv | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319594/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319594/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:59:43 2022 | |
| Hits: 711 / 810 (87.78 %) | |
| Direct: 168 / 819 (20.51 %) | |
| Preprocessed: 543 / 645 (84.19 %) | |
| Misses: 99 | |
| Direct: 651 | |
| Preprocessed: 102 | |
| Uncacheable: 128 | |
| Primary storage: | |
| Hits: 1187 / 1632 (72.73 %) | |
| Misses: 445 | |
| Cache size (GB): 0.47 / 0.51 (91.37 %) | |
| Files: 26715 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 105 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646827188:step_script [0Ksection_start:1646827188:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:intel-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=68826 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Aintel-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646827209:archive_cache [0Ksection_start:1646827209:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=69056 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179972 responseStatus[0;m=201 Created token[0;m=ZKSJTxkY | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=69096 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179972 responseStatus[0;m=201 Created token[0;m=ZKSJTxkY | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=69140 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179972 responseStatus[0;m=201 Created token[0;m=ZKSJTxkY | |
| section_end:1646827210:upload_artifacts_on_success [0Ksection_start:1646827210:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646827211:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826369:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826369:resolve_secrets [0Ksection_start:1646826369:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor163484361, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179970 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179970_PROD_P112_CP9_C3 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319604 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179970_PROD_P112_CP9_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319604 --cpus-per-task=8 --mem=76G | |
| section_end:1646826401:prepare_executor [0Ksection_start:1646826401:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646826404:prepare_script [0Ksection_start:1646826404:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826404:get_sources [0Ksection_start:1646826404:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=24363 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646826411:restore_cache [0Ksection_start:1646826411:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (179965)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=24594 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179965 responseStatus[0;m=200 OK token[0;m=atY9Zsk4 | |
| section_end:1646826411:download_artifacts [0Ksection_start:1646826411:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179970/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179970/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179970/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179970/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179970/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179970_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/clohwtjjwrfpo4z4oreptyb2jbe3wrcs | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be dwkjkuknoiprgdt5yhhj7uooz4rce2vl | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319604/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319604/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:47:36 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (91.61 %) | |
| Files: 29927 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'dwkjkuknoiprgdt5yhhj7uooz4rce2vl' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - dwkjkuk neuron@develop%nvhpc@22.2+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - ocv5kkj ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| - 55wtnz6 ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] clohwtj ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] bfwiaoz ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] wd5k5wi ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vutuzbn ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] cnhmkfz ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] xtett6q ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - xzdnug7 ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - ij6isvr ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vwedalx ^readline@8.1%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj) | |
| ==> cuda@11.6.0 : has external module in ['cuda/11.6.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-34qjta (external cuda-11.6.0-wd5k5wioelahwux72y3g3bytolebtkoh) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-vwedalxfrcxjaatlnup77gynyx6weav5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/coreneuron-develop-clohwt | |
| ==> Installing neuron-develop-dwkjkuknoiprgdt5yhhj7uooz4rce2vl | |
| ==> No binary for neuron-develop-dwkjkuknoiprgdt5yhhj7uooz4rce2vl found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-dwkjkuknoiprgdt5yhhj7uooz4rce2vl | |
| Fetch: 29.74s. Build: 37m 22.90s. Total: 37m 52.64s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/neuron-develop-dwkjku | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319604/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319604/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 13:27:14 2022 | |
| Hits: 705 / 807 (87.36 %) | |
| Direct: 169 / 816 (20.71 %) | |
| Preprocessed: 536 / 641 (83.62 %) | |
| Misses: 102 | |
| Direct: 647 | |
| Preprocessed: 105 | |
| Uncacheable: 120 | |
| Primary storage: | |
| Hits: 1178 / 1626 (72.45 %) | |
| Misses: 448 | |
| Cache size (GB): 0.46 / 0.51 (89.81 %) | |
| Files: 29349 | |
| Cleanups: 2 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 97 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646828836:step_script [0Ksection_start:1646828836:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=107992 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646828855:archive_cache [0Ksection_start:1646828855:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=108535 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179970 responseStatus[0;m=201 Created token[0;m=NmQw1Qfg | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=108570 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179970 responseStatus[0;m=201 Created token[0;m=NmQw1Qfg | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109001 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179970 responseStatus[0;m=201 Created token[0;m=NmQw1Qfg | |
| section_end:1646828857:upload_artifacts_on_success [0Ksection_start:1646828857:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646828858:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826375:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826375:resolve_secrets [0Ksection_start:1646826375:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor153823752, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179969 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179969_PROD_P112_CP2_C4 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319602 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179969_PROD_P112_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319602 --cpus-per-task=8 --mem=76G | |
| section_end:1646826401:prepare_executor [0Ksection_start:1646826401:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n31 via bbpv1.epfl.ch... | |
| section_end:1646826404:prepare_script [0Ksection_start:1646826404:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826404:get_sources [0Ksection_start:1646826404:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=204095 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646826410:restore_cache [0Ksection_start:1646826410:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (179964)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=204177 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179964 responseStatus[0;m=200 OK token[0;m=PrgH_RpU | |
| section_end:1646826411:download_artifacts [0Ksection_start:1646826411:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179969/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179969/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179969/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179969/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179969/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179969_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/jnp6ftwa2yzkkhnwk6ebarxcp5sqkwtt | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be ik54mlr5japlprt37kesnyjymcdgaqgh | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319602/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319602/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:47:17 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (88.52 %) | |
| Files: 31025 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'ik54mlr5japlprt37kesnyjymcdgaqgh' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - ik54mlr neuron@develop%nvhpc@22.2+binary~caliper+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake | |
| - ocv5kkj ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| - 55wtnz6 ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] jnp6ftw ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] bfwiaoz ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] wd5k5wi ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vutuzbn ^libsonata-report@1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] x72vveu ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [+] cnhmkfz ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] xtett6q ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - xzdnug7 ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - ij6isvr ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vwedalx ^readline@8.1%nvhpc@22.2 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj) | |
| ==> cuda@11.6.0 : has external module in ['cuda/11.6.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-34qjta (external cuda-11.6.0-wd5k5wioelahwux72y3g3bytolebtkoh) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-vwedalxfrcxjaatlnup77gynyx6weav5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1-vutuzb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/coreneuron-develop-jnp6ft | |
| ==> Installing neuron-develop-ik54mlr5japlprt37kesnyjymcdgaqgh | |
| ==> No binary for neuron-develop-ik54mlr5japlprt37kesnyjymcdgaqgh found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-ik54mlr5japlprt37kesnyjymcdgaqgh | |
| Fetch: 13.63s. Build: 29m 34.28s. Total: 29m 47.91s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_nvhpc-22.2-skylake/neuron-develop-ik54ml | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319602/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319602/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 13:18:03 2022 | |
| Hits: 710 / 807 (87.98 %) | |
| Direct: 169 / 816 (20.71 %) | |
| Preprocessed: 541 / 641 (84.40 %) | |
| Misses: 97 | |
| Direct: 647 | |
| Preprocessed: 100 | |
| Uncacheable: 120 | |
| Primary storage: | |
| Hits: 1183 / 1626 (72.76 %) | |
| Misses: 443 | |
| Cache size (GB): 0.46 / 0.51 (89.21 %) | |
| Files: 31359 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 97 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646828285:step_script [0Ksection_start:1646828285:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224045 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646828305:archive_cache [0Ksection_start:1646828305:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224157 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179969 responseStatus[0;m=201 Created token[0;m=NtFoy6Ji | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224199 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179969 responseStatus[0;m=201 Created token[0;m=NtFoy6Ji | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224237 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179969 responseStatus[0;m=201 Created token[0;m=NtFoy6Ji | |
| section_end:1646828306:upload_artifacts_on_success [0Ksection_start:1646828306:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646828307:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646825727:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646825727:resolve_secrets [0Ksection_start:1646825727:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor386983677, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179961 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=8 | |
| A slurm job will be created with name GL_J179961_PROD_P112_CP2_C4 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319494 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J179961_PROD_P112_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=2 --jobid=319494 --cpus-per-task=8 --mem=76G | |
| section_end:1646825756:prepare_executor [0Ksection_start:1646825756:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n31 via bbpv1.epfl.ch... | |
| section_end:1646825758:prepare_script [0Ksection_start:1646825758:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646825759:get_sources [0Ksection_start:1646825759:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:nmodl-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40382 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1646825764:restore_cache [0Ksection_start:1646825764:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (179959)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=40451 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179959 responseStatus[0;m=200 OK token[0;m=-7SAWh_S | |
| section_end:1646825765:download_artifacts [0Ksection_start:1646825765:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179961/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179961/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179961/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179961/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179961/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179961_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be cnhmkfzsucqnmy6dfxyfikno2yj57grf | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319494/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319494/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:36:28 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (90.94 %) | |
| Files: 1429 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'cnhmkfzsucqnmy6dfxyfikno2yj57grf' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - cnhmkfz nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cppb7al ^bison@3.8.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - 4bt76dp ^flex@2.6.3%gcc@11.2.0+lex~nls arch=linux-rhel7-skylake | |
| - utrxbc3 ^ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ciusbmc ^py-setuptools-scm@6.3.2%gcc@11.2.0+toml arch=linux-rhel7-skylake | |
| [^] hmcew6w ^py-tomli@1.2.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] sxd7srs ^py-pip@21.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] xtett6q ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-cppb7alftvhxbedsuxqv72z2thjuoizw) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-4bt76dpxbix6ep4qtz3mv5i2iddilv53) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-utrxbc3aohnru5eynalc3hyv4ca4jqte) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pip-21.1.2-sxd7sr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-tomli-1.2.1-hmcew6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-scm-6.3.2-ciusbm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| ==> Installing nmodl-develop-cnhmkfzsucqnmy6dfxyfikno2yj57grf | |
| ==> No binary for nmodl-develop-cnhmkfzsucqnmy6dfxyfikno2yj57grf found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-cnhmkfzsucqnmy6dfxyfikno2yj57grf | |
| Fetch: 32.90s. Build: 1m 55.69s. Total: 2m 28.59s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/319494/ccache | |
| Primary config: /nvme/bbpcihpcproj12/319494/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Mar 9 12:39:41 2022 | |
| Hits: 133 / 135 (98.52 %) | |
| Direct: 31 / 135 (22.96 %) | |
| Preprocessed: 102 / 104 (98.08 %) | |
| Misses: 2 | |
| Direct: 104 | |
| Preprocessed: 2 | |
| Uncacheable: 27 | |
| Primary storage: | |
| Hits: 164 / 270 (60.74 %) | |
| Misses: 106 | |
| Cache size (GB): 0.47 / 0.51 (90.97 %) | |
| Files: 1433 | |
| Uncacheable: | |
| Called for linking: 26 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1646825983:step_script [0Ksection_start:1646825983:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:nmodl-8...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=42859 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Anmodl-8[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1646826003:archive_cache [0Ksection_start:1646826003:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=43216 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179961 responseStatus[0;m=201 Created token[0;m=8y7dxwFF | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=43256 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179961 responseStatus[0;m=201 Created token[0;m=8y7dxwFF | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=43300 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179961 responseStatus[0;m=201 Created token[0;m=8y7dxwFF | |
| section_end:1646826005:upload_artifacts_on_success [0Ksection_start:1646826005:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826005:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646825641:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646825641:resolve_secrets [0Ksection_start:1646825641:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor591810627, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179959 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=6 | |
| A slurm job will be created with name GL_J179959_PROD_P112_CP2_C4 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319487 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J179959_PROD_P112_CP2_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=1 --jobid=319487 --cpus-per-task=6 --mem=30750M | |
| section_end:1646825642:prepare_executor [0Ksection_start:1646825642:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n31 via bbpv1.epfl.ch... | |
| section_end:1646825644:prepare_script [0Ksection_start:1646825644:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646825645:get_sources [0Ksection_start:1646825645:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-scipy/1.7.1 | |
| Autoloading py-numpy/1.19.5 | |
| Autoloading py-mpi4py/3.1.2 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.4.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| NEURON_BRANCH=hines/POINTER-to-RANGE | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| Unsetting NEURON_BRANCH | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179959 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 21% (1927/9132) Updating files: 22% (2010/9132) Updating files: 23% (2101/9132) Updating files: 24% (2192/9132) Updating files: 25% (2283/9132) Updating files: 26% (2375/9132) Updating files: 27% (2466/9132) Updating files: 28% (2557/9132) Updating files: 29% (2649/9132) Updating files: 30% (2740/9132) Updating files: 31% (2831/9132) Updating files: 31% (2838/9132) Updating files: 32% (2923/9132) Updating files: 33% (3014/9132) Updating files: 34% (3105/9132) Updating files: 35% (3197/9132) Updating files: 36% (3288/9132) Updating files: 37% (3379/9132) Updating files: 38% (3471/9132) Updating files: 39% (3562/9132) Updating files: 40% (3653/9132) Updating files: 41% (3745/9132) Updating files: 41% (3746/9132) Updating files: 42% (3836/9132) Updating files: 43% (3927/9132) Updating files: 44% (4019/9132) Updating files: 45% (4110/9132) Updating files: 46% (4201/9132) Updating files: 47% (4293/9132) Updating files: 48% (4384/9132) Updating files: 49% (4475/9132) Updating files: 50% (4566/9132) Updating files: 51% (4658/9132) Updating files: 51% (4703/9132) Updating files: 52% (4749/9132) Updating files: 53% (4840/9132) Updating files: 54% (4932/9132) Updating files: 55% (5023/9132) Updating files: 56% (5114/9132) Updating files: 57% (5206/9132) Updating files: 58% (5297/9132) Updating files: 59% (5388/9132) Updating files: 60% (5480/9132) Updating files: 61% (5571/9132) Updating files: 62% (5662/9132) Updating files: 62% (5730/9132) Updating files: 63% (5754/9132) Updating files: 64% (5845/9132) Updating files: 65% (5936/9132) Updating files: 66% (6028/9132) Updating files: 67% (6119/9132) Updating files: 68% (6210/9132) Updating files: 69% (6302/9132) Updating files: 70% (6393/9132) Updating files: 71% (6484/9132) Updating files: 72% (6576/9132) Updating files: 73% (6667/9132) Updating files: 74% (6758/9132) Updating files: 75% (6849/9132) Updating files: 76% (6941/9132) Updating files: 77% (7032/9132) Updating files: 78% (7123/9132) Updating files: 78% (7125/9132) Updating files: 79% (7215/9132) Updating files: 80% (7306/9132) Updating files: 81% (7397/9132) Updating files: 82% (7489/9132) Updating files: 83% (7580/9132) Updating files: 84% (7671/9132) Updating files: 85% (7763/9132) Updating files: 86% (7854/9132) Updating files: 87% (7945/9132) Updating files: 88% (8037/9132) Updating files: 89% (8128/9132) Updating files: 90% (8219/9132) Updating files: 91% (8311/9132) Updating files: 92% (8402/9132) Updating files: 93% (8493/9132) Updating files: 93% (8518/9132) Updating files: 94% (8585/9132) Updating files: 95% (8676/9132) Updating files: 96% (8767/9132) Updating files: 97% (8859/9132) Updating files: 98% (8950/9132) Updating files: 99% (9041/9132) Updating files: 100% (9132/9132) Updating files: 100% (9132/9132), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032/J179959_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack configure-pipeline --ignore-packages CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=hines/POINTER-to-RANGE GITLAB_PIPELINES_BRANCH=main NEURON_BRANCH=hines/POINTER-to-RANGE NMODL_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master CORENEURON_COMMIT=99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28 | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=hines/POINTER-to-RANGE | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> neuron: resolved branch hines/POINTER-to-RANGE to c823fbf8b9fc8e6557764935dfad17f14cf766d0 | |
| ==> nmodl: resolved branch master to 9de6a5d59b2861402d50ef27e8fba4a39abbbf70 | |
| ==> neuron@develop: remove branch/commit/tag | |
| ==> neuron@develop: use commit="c823fbf8b9fc8e6557764935dfad17f14cf766d0" | |
| ==> neuron@develop: add preferred=True | |
| ==> nmodl@develop: remove branch/commit/tag | |
| ==> nmodl@develop: use commit="9de6a5d59b2861402d50ef27e8fba4a39abbbf70" | |
| ==> nmodl@develop: add preferred=True | |
| ==> coreneuron@develop: remove branch/commit/tag | |
| ==> coreneuron@develop: use commit="99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28" | |
| ==> coreneuron@develop: add preferred=True | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| diff --git a/bluebrain/repo-bluebrain/packages/coreneuron/package.py b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| index 88e0cc5..35cd11b 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| @@ -20,7 +20,7 @@ class Coreneuron(CMakePackage): | |
| # This simplifies testing the gitlab-pipelines repository: | |
| git = "git@bbpgitlab.epfl.ch:hpc/coreneuron.git" | |
| - version('develop', branch='master') | |
| + version('develop', preferred=True, commit='99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28') # old: branch='master' | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20220304', commit='2d08705') | |
| version('1.0.0.20220218', commit='102ebde') | |
| diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| index 2baf3d1..3dcae14 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| @@ -14,7 +14,7 @@ class Nmodl(CMakePackage): | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| # 0.3.1 > 0.3.0.20220110 > 0.3.0 > 0.3b > 0.3 to Spack | |
| - version('develop', branch='master', submodules=True) | |
| + version('develop', preferred=True, commit='9de6a5d59b2861402d50ef27e8fba4a39abbbf70', submodules=True) # old: branch='master' | |
| # For deployment; nmodl@0.3.0%nvhpc@21.11 doesn't build with eigen/intrinsics errors | |
| version('0.3.0.20220110', commit='9e0a6f260ac2e6fad068a39ea3bdf7aa7a6f4ee0') | |
| version('0.3.0', tag='0.3') | |
| diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py | |
| index 3f44d8c..6bb14d0 100644 | |
| --- a/bluebrain/repo-patches/packages/neuron/package.py | |
| +++ b/bluebrain/repo-patches/packages/neuron/package.py | |
| @@ -34,7 +34,7 @@ class Neuron(CMakePackage): | |
| # Patch for recent CMake versions that don't identify NVHPC as PGI | |
| patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^cmake@3.20:") | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='c823fbf8b9fc8e6557764935dfad17f14cf766d0') # old: branch="master" | |
| version("8.0.2", tag="8.0.2") | |
| version("8.0.1", tag="8.0.1") | |
| version("8.0.0", tag="8.0.0") | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=c823fbf8b9fc8e6557764935dfad17f14cf766d0 | |
| NMODL_COMMIT=9de6a5d59b2861402d50ef27e8fba4a39abbbf70 | |
| CORENEURON_COMMIT=99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28 | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack spec -IL ninja[0;m | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| ==> Bootstrapping clingo from pre-built binaries | |
| - utrxbc3aohnru5eynalc3hyv4ca4jqte ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| section_end:1646825721:step_script [0Ksection_start:1646825721:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=197146 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179959 responseStatus[0;m=201 Created token[0;m=-7SAWh_S | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=197170 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=179959 responseStatus[0;m=201 Created token[0;m=-7SAWh_S | |
| section_end:1646825722:upload_artifacts_on_success [0Ksection_start:1646825722:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646825723:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646825910:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646825910:resolve_secrets [0Ksection_start:1646825910:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor353719578, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179977 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179977_PROD_P112_CP7_C7 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319553 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J179977_PROD_P112_CP7_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=8 --jobid=319553 --cpus-per-task=1 --mem=30750M | |
| section_end:1646825940:prepare_executor [0Ksection_start:1646825940:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646825944:prepare_script [0Ksection_start:1646825944:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646825946:get_sources [0Ksection_start:1646825946:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (179966)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=774 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179966 responseStatus[0;m=200 OK token[0;m=2_MWRqfN | |
| section_end:1646825948:download_artifacts [0Ksection_start:1646825948:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n31 | |
| Build name: Linux-icpc | |
| Create new tag: 20220309-1140 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179966/spack-build/spack-stage-coreneuron-develop-hsyhen5wbojr4dsx5rf32wndj3dpm5nb/spack-build-hsyhen5 | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #6: ring_TEST .......................... Passed 2.20 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/17 Test #17: reporting_1 ........................ Passed 2.21 sec | |
| 3/17 Test #1: cmd_interface_test ................. Passed 2.38 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #3: alignment_test ..................... Passed 2.85 sec | |
| 5/17 Test #2: interleave_info_constructor_test ... Passed 2.90 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #4: queuing_test ....................... Passed 2.91 sec | |
| 7/17 Test #5: lfp_test ........................... Passed 3.09 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 4.72 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #10: ring_permute1_TEST ................. Passed 4.12 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #8: ring_multisend_TEST ................ Passed 4.86 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #13: ring_gap_binqueue_TEST ............. Passed 2.52 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 3.43 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #12: ring_gap_TEST ...................... Passed 3.51 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #9: ring_spike_buffer_TEST ............. Passed 8.15 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 2.06 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 1.68 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 1.62 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 12.47 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646826034:step_script [0Ksection_start:1646826034:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=5446 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179977 responseStatus[0;m=201 Created token[0;m=_kQtgkW3 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=5501 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179977 responseStatus[0;m=201 Created token[0;m=_kQtgkW3 | |
| section_end:1646826035:upload_artifacts_on_success [0Ksection_start:1646826035:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826036:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826033:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826033:resolve_secrets [0Ksection_start:1646826033:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor059737182, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179974 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179974_PROD_P112_CP5_C8 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 319562 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J179974_PROD_P112_CP5_C8 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=8 --jobid=319562 --cpus-per-task=1 --mem=30750M | |
| section_end:1646826042:prepare_executor [0Ksection_start:1646826042:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1646826045:prepare_script [0Ksection_start:1646826045:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826046:get_sources [0Ksection_start:1646826046:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc:unified (179963)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=182060 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179963 responseStatus[0;m=200 OK token[0;m=HHCPVuHs | |
| section_end:1646826047:download_artifacts [0Ksection_start:1646826047:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n17 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220309-1141 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179963/spack-build/spack-stage-coreneuron-develop-5u3hb5563fiewjkvz6z6mzftkoy4lmwk/spack-build-5u3hb55 | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #4: queuing_test ........................... Passed 6.71 sec | |
| 2/19 Test #1: cmd_interface_test ..................... Passed 6.82 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #5: lfp_test ............................... Passed 7.01 sec | |
| 4/19 Test #19: reporting_1 ............................ Passed 44.93 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #2: interleave_info_constructor_test ....... Passed 45.50 sec | |
| 6/19 Test #3: alignment_test ......................... Passed 45.67 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 45.87 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 47.59 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #9: ring_spike_buffer_TEST ................. Passed 27.45 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #10: ring_permute1_TEST ..................... Passed 27.27 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #8: ring_multisend_TEST .................... Passed 28.30 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 34.03 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 65.84 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #14: ring_gap_multisend_TEST ................ Passed 246.57 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #13: ring_gap_binqueue_TEST ................. Passed 247.33 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 233.57 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 183.34 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 32.29 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 40.60 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 361.12 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646826473:step_script [0Ksection_start:1646826473:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=198180 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179974 responseStatus[0;m=201 Created token[0;m=CrQx55C- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=198212 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179974 responseStatus[0;m=201 Created token[0;m=CrQx55C- | |
| section_end:1646826474:upload_artifacts_on_success [0Ksection_start:1646826474:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826475:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826073:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826073:resolve_secrets [0Ksection_start:1646826073:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor771979576, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179973 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179973_PROD_P112_CP7_C7 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 319563 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J179973_PROD_P112_CP7_C7 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=8 --jobid=319563 --cpus-per-task=1 --mem=30750M | |
| section_end:1646826083:prepare_executor [0Ksection_start:1646826083:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1646826086:prepare_script [0Ksection_start:1646826086:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826088:get_sources [0Ksection_start:1646826088:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (179962)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=183730 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179962 responseStatus[0;m=200 OK token[0;m=BnVZjzKN | |
| section_end:1646826089:download_artifacts [0Ksection_start:1646826089:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n17 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220309-1142 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179962/spack-build/spack-stage-coreneuron-develop-qvmfnnxhw57tyce665xfpgrivex6jdyr/spack-build-qvmfnnx | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #3: alignment_test ......................... Passed 5.39 sec | |
| 2/19 Test #4: queuing_test ........................... Passed 5.58 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #2: interleave_info_constructor_test ....... Passed 5.81 sec | |
| 4/19 Test #1: cmd_interface_test ..................... Passed 5.90 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 6.13 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 41.63 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 41.86 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #8: ring_multisend_TEST .................... Passed 36.16 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #7: ring_binqueue_TEST ..................... Passed 36.99 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 33.94 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 33.73 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 33.78 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 33.43 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #16: ring_gap_permute2_TEST ................. Passed 37.30 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #13: ring_gap_binqueue_TEST ................. Passed 37.79 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 37.87 sec | |
| 17/19 Test #14: ring_gap_multisend_TEST ................ Passed 38.14 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 4.19 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 4.47 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 117.93 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646826243:step_script [0Ksection_start:1646826243:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=189522 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179973 responseStatus[0;m=201 Created token[0;m=pbYW6erT | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=189580 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179973 responseStatus[0;m=201 Created token[0;m=pbYW6erT | |
| section_end:1646826245:upload_artifacts_on_success [0Ksection_start:1646826245:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826246:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826193:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826193:resolve_secrets [0Ksection_start:1646826193:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor001499948, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179978 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179978_PROD_P112_CP12_C21 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319593 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J179978_PROD_P112_CP12_C21 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=8 --jobid=319593 --cpus-per-task=1 --mem=30750M | |
| section_end:1646826288:prepare_executor [0Ksection_start:1646826288:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n17 via bbpv1.epfl.ch... | |
| section_end:1646826291:prepare_script [0Ksection_start:1646826291:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826292:get_sources [0Ksection_start:1646826292:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (179967)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=19860 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179967 responseStatus[0;m=200 OK token[0;m=2FX3PAsd | |
| section_end:1646826293:download_artifacts [0Ksection_start:1646826293:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n17 | |
| Build name: Linux-icpc | |
| Create new tag: 20220309-1146 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179967/spack-build/spack-stage-coreneuron-develop-f2bfytl2xzstchvaem4gflxln4r6z4cz/spack-build-f2bfytl | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #2: interleave_info_constructor_test ... Passed 4.13 sec | |
| 2/17 Test #4: queuing_test ....................... Passed 4.37 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #6: ring_TEST .......................... Passed 4.61 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #1: cmd_interface_test ................. Passed 4.64 sec | |
| 5/17 Test #17: reporting_1 ........................ Passed 4.62 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #3: alignment_test ..................... Passed 4.64 sec | |
| 7/17 Test #5: lfp_test ........................... Passed 4.79 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 2.32 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 3.35 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #10: ring_permute1_TEST ................. Passed 3.50 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.71 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 2.32 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #12: ring_gap_TEST ...................... Passed 2.81 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 4.03 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 4.37 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 3.77 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 2.73 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 13.60 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646826375:step_script [0Ksection_start:1646826375:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=23296 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179978 responseStatus[0;m=201 Created token[0;m=fxkXj4BU | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=23338 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179978 responseStatus[0;m=201 Created token[0;m=fxkXj4BU | |
| section_end:1646826377:upload_artifacts_on_success [0Ksection_start:1646826377:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826378:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826370:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826370:resolve_secrets [0Ksection_start:1646826370:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor083145699, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179976 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179976_PROD_P112_CP10_C10 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 319603 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J179976_PROD_P112_CP10_C10 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=8 --jobid=319603 --cpus-per-task=1 --mem=30750M | |
| section_end:1646826401:prepare_executor [0Ksection_start:1646826401:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1646826405:prepare_script [0Ksection_start:1646826405:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826406:get_sources [0Ksection_start:1646826406:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (179965)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=194784 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179965 responseStatus[0;m=200 OK token[0;m=atY9Zsk4 | |
| section_end:1646826408:download_artifacts [0Ksection_start:1646826408:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n31 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220309-1147 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179965/spack-build/spack-stage-coreneuron-develop-clohwtjjwrfpo4z4oreptyb2jbe3wrcs/spack-build-clohwtj | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 2.31 sec | |
| 2/19 Test #3: alignment_test ......................... Passed 5.76 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #2: interleave_info_constructor_test ....... Passed 6.42 sec | |
| 4/19 Test #4: queuing_test ........................... Passed 6.79 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 7.03 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 34.30 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 34.91 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 52.28 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 53.94 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 47.23 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 46.84 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 30.31 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 36.97 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 38.56 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 38.75 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 39.59 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 30.45 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 15.08 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 16.77 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 137.30 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646826575:step_script [0Ksection_start:1646826575:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200003 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179976 responseStatus[0;m=201 Created token[0;m=ZP9w7Bt3 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200037 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179976 responseStatus[0;m=201 Created token[0;m=ZP9w7Bt3 | |
| section_end:1646826577:upload_artifacts_on_success [0Ksection_start:1646826577:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826578:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826376:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826376:resolve_secrets [0Ksection_start:1646826376:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor355510673, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179975 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179975_PROD_P112_CP14_C12 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 319605 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J179975_PROD_P112_CP14_C12 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=8 --jobid=319605 --cpus-per-task=1 --mem=30750M | |
| section_end:1646826401:prepare_executor [0Ksection_start:1646826401:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1646826405:prepare_script [0Ksection_start:1646826405:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646826406:get_sources [0Ksection_start:1646826406:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (179964)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=194726 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179964 responseStatus[0;m=200 OK token[0;m=PrgH_RpU | |
| section_end:1646826407:download_artifacts [0Ksection_start:1646826407:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n31 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220309-1147 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179964/spack-build/spack-stage-coreneuron-develop-jnp6ftwa2yzkkhnwk6ebarxcp5sqkwtt/spack-build-jnp6ftw | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 3.32 sec | |
| 2/19 Test #2: interleave_info_constructor_test ....... Passed 6.02 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #4: queuing_test ........................... Passed 6.17 sec | |
| 4/19 Test #3: alignment_test ......................... Passed 6.61 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 7.21 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 34.62 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 37.24 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 84.91 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 88.09 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 62.08 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 59.64 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 15.20 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 144.51 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #14: ring_gap_multisend_TEST ................ Passed 154.08 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #13: ring_gap_binqueue_TEST ................. Passed 166.21 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 15.36 sec | |
| 17/19 Test #15: ring_gap_permute1_TEST ................. Passed 160.28 sec | |
| 18/19 Test #16: ring_gap_permute2_TEST ................. Passed 27.29 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 5.32 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 268.26 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646826706:step_script [0Ksection_start:1646826706:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200965 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179975 responseStatus[0;m=201 Created token[0;m=u6oKM2Lz | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200999 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179975 responseStatus[0;m=201 Created token[0;m=u6oKM2Lz | |
| section_end:1646826708:upload_artifacts_on_success [0Ksection_start:1646826708:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646826708:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646826816:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646826816:resolve_secrets [0Ksection_start:1646826816:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor402836746, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179982 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179982_PROD_P112_CP1_C1 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319692 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J179982_PROD_P112_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=16 --jobid=319692 --cpus-per-task=1 --mem=76G | |
| section_end:1646827057:prepare_executor [0Ksection_start:1646827057:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n10 via bbpv1.epfl.ch... | |
| section_end:1646827060:prepare_script [0Ksection_start:1646827060:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646827061:get_sources [0Ksection_start:1646827061:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:intel (179971)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=281222 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179971 responseStatus[0;m=200 OK token[0;m=LD3u8sHm | |
| section_end:1646827063:download_artifacts [0Ksection_start:1646827063:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n17 | |
| Build name: Linux-icpc | |
| Create new tag: 20220309-1158 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179971/spack-build/spack-stage-neuron-develop-47kwkdqbfahzhd6mgo3d7lvidjenlcwo/spack-build-47kwkdq | |
| Start 43: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 50: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 56: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 62: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 67: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 73: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 79: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| Start 85: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 1/115 Test #50: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.98 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/115 Test #56: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 3.14 sec | |
| Start 97: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 3/115 Test #62: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 3.47 sec | |
| Start 38: external_ringtest::neuron | |
| Start 46: testcorenrn_bbcore::neuron | |
| 4/115 Test #73: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 4.76 sec | |
| Start 39: external_ringtest::neuron_mpi | |
| 5/115 Test #67: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 4.92 sec | |
| Start 40: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 6/115 Test #85: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 5.33 sec | |
| Start 41: external_ringtest::coreneuron_cpu_mpi | |
| 7/115 Test #46: testcorenrn_bbcore::neuron ......................................... Passed 2.19 sec | |
| Start 47: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/115 Test #91: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.70 sec | |
| Start 48: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 9/115 Test #97: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 2.71 sec | |
| Start 49: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 10/115 Test #38: external_ringtest::neuron .......................................... Passed 2.69 sec | |
| Start 52: testcorenrn_deriv::neuron | |
| 11/115 Test #43: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 6.36 sec | |
| Start 42: external_ringtest::coreneuron_cpu_mpi_offline | |
| 12/115 Test #52: testcorenrn_deriv::neuron .......................................... Passed 2.59 sec | |
| Start 53: testcorenrn_deriv::coreneuron_cpu_online | |
| 13/115 Test #49: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 3.09 sec | |
| Start 54: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 14/115 Test #47: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 4.54 sec | |
| Start 55: testcorenrn_deriv::coreneuron_cpu_offline | |
| 15/115 Test #55: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.72 sec | |
| Start 87: testcorenrn_conc::neuron | |
| 16/115 Test #53: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.44 sec | |
| Start 88: testcorenrn_conc::coreneuron_cpu_online | |
| 17/115 Test #54: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 3.96 sec | |
| Start 89: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 18/115 Test #42: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 7.23 sec | |
| Start 58: testcorenrn_gf::neuron | |
| 19/115 Test #39: external_ringtest::neuron_mpi ...................................... Passed 8.98 sec | |
| Start 59: testcorenrn_gf::coreneuron_cpu_online | |
| 20/115 Test #41: external_ringtest::coreneuron_cpu_mpi .............................. Passed 8.49 sec | |
| Start 60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 21/115 Test #88: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 1.95 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_offline | |
| 22/115 Test #79: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 14.47 sec | |
| Start 112: olfactory-bulb-3d::neuron::preparation | |
| 23/115 Test #112: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.04 sec | |
| Start 114: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 24/115 Test #114: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.03 sec | |
| Start 35: reduced_dentate::neuron | |
| 25/115 Test #48: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 9.20 sec | |
| Start 93: testcorenrn_kin::neuron | |
| 26/115 Test #89: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 2.53 sec | |
| Start 94: testcorenrn_kin::coreneuron_cpu_online | |
| 27/115 Test #90: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.88 sec | |
| Start 95: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 28/115 Test #59: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 3.45 sec | |
| Start 61: testcorenrn_gf::coreneuron_cpu_offline | |
| 29/115 Test #93: testcorenrn_kin::neuron ............................................ Passed 3.49 sec | |
| Start 96: testcorenrn_kin::coreneuron_cpu_offline | |
| 30/115 Test #94: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 4.59 sec | |
| Start 103: channel_benchmark_hippo::neuron | |
| 31/115 Test #95: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 4.90 sec | |
| Start 104: channel_benchmark_hippo::coreneuron_cpu_online | |
| 32/115 Test #40: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 17.27 sec | |
| Start 64: testcorenrn_patstim::neuron | |
| 33/115 Test #61: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 5.18 sec | |
| Start 65: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 34/115 Test #60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 10.46 sec | |
| Start 66: testcorenrn_patstim::coreneuron_cpu_offline | |
| 35/115 Test #65: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 7.85 sec | |
| Start 69: testcorenrn_vecplay::neuron | |
| 36/115 Test #96: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 17.44 sec | |
| Start 105: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 37/115 Test #64: testcorenrn_patstim::neuron ........................................ Passed 32.92 sec | |
| Start 70: testcorenrn_vecplay::coreneuron_cpu_online | |
| 38/115 Test #70: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 6.82 sec | |
| Start 71: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 39/115 Test #58: testcorenrn_gf::neuron ............................................. Passed 51.46 sec | |
| Start 72: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 40/115 Test #72: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 3.24 sec | |
| Start 81: testcorenrn_watch::neuron | |
| 41/115 Test #71: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 8.75 sec | |
| Start 82: testcorenrn_watch::coreneuron_cpu_online | |
| 42/115 Test #81: testcorenrn_watch::neuron .......................................... Passed 3.66 sec | |
| Start 83: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 43/115 Test #82: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 5.89 sec | |
| Start 84: testcorenrn_watch::coreneuron_cpu_offline | |
| 44/115 Test #84: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.07 sec | |
| Start 99: testcorenrn_netstimdirect::direct_netstimdirect | |
| 45/115 Test #83: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 8.07 sec | |
| Start 100: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 46/115 Test #66: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 61.99 sec | |
| Start 107: channel_benchmark_sscx::neuron | |
| Start 108: channel_benchmark_sscx::coreneuron_cpu_online | |
| 47/115 Test #99: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 6.89 sec | |
| Start 109: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| Start 1: testneuron | |
| 48/115 Test #1: testneuron ......................................................... Passed 0.08 sec | |
| Start 2: ringtest | |
| 49/115 Test #2: ringtest ........................................................... Passed 0.54 sec | |
| Start 3: connect_dend | |
| 50/115 Test #3: connect_dend ....................................................... Passed 1.11 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 51/115 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.66 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 52/115 Test #100: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 8.96 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| Start 7: mpi_init::python_mpienv | |
| 53/115 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.55 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 54/115 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 1.46 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 55/115 Test #7: mpi_init::python_mpienv ............................................ Passed 3.32 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 56/115 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.93 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 57/115 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 3.78 sec | |
| Start 12: pynrn_tests::basic_tests | |
| 58/115 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.15 sec | |
| Start 13: parallel_tests | |
| 59/115 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 5.47 sec | |
| Start 14: parallel_partrans | |
| 60/115 Test #69: testcorenrn_vecplay::neuron ........................................ Passed 69.19 sec | |
| Start 15: parallel_netpar | |
| Start 16: parallel_bas | |
| 61/115 Test #87: testcorenrn_conc::neuron ........................................... Passed 88.59 sec | |
| Start 17: coreneuron_modtests::fornetcon_py_cpu | |
| 62/115 Test #12: pynrn_tests::basic_tests ........................................... Passed 12.70 sec | |
| Start 18: coreneuron_modtests::direct_py_cpu | |
| 63/115 Test #14: parallel_partrans .................................................. Passed 11.68 sec | |
| Start 19: coreneuron_modtests::direct_hoc_cpu | |
| 64/115 Test #15: parallel_netpar .................................................... Passed 11.91 sec | |
| Start 20: coreneuron_modtests::spikes_py_cpu | |
| 65/115 Test #13: parallel_tests ..................................................... Passed 20.57 sec | |
| Start 21: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 66/115 Test #35: reduced_dentate::neuron ............................................ Passed 101.35 sec | |
| Start 36: reduced_dentate::coreneuron_cpu | |
| 67/115 Test #19: coreneuron_modtests::direct_hoc_cpu ................................ Passed 15.07 sec | |
| Start 22: coreneuron_modtests::fast_imem_py_cpu | |
| 68/115 Test #103: channel_benchmark_hippo::neuron .................................... Passed 112.23 sec | |
| Start 23: coreneuron_modtests::datareturn_py_cpu | |
| 69/115 Test #104: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 112.98 sec | |
| Start 24: coreneuron_modtests::test_units_py_cpu | |
| 70/115 Test #16: parallel_bas ....................................................... Passed 37.61 sec | |
| Start 25: coreneuron_modtests::test_netmove_py_cpu | |
| 71/115 Test #17: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 69.60 sec | |
| Start 26: coreneuron_modtests::test_pointer_py_cpu | |
| 72/115 Test #18: coreneuron_modtests::direct_py_cpu ................................. Passed 72.13 sec | |
| Start 27: coreneuron_modtests::test_watchrange_py_cpu | |
| 73/115 Test #20: coreneuron_modtests::spikes_py_cpu ................................. Passed 75.84 sec | |
| Start 28: coreneuron_modtests::test_psolve_py_cpu | |
| 74/115 Test #21: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 74.74 sec | |
| Start 29: coreneuron_modtests::test_ba_py_cpu | |
| 75/115 Test #105: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 154.61 sec | |
| Start 30: coreneuron_modtests::test_natrans_py_cpu | |
| 76/115 Test #22: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 76.17 sec | |
| Start 34: external_nrntest | |
| 77/115 Test #24: coreneuron_modtests::test_units_py_cpu ............................. Passed 73.59 sec | |
| Start 51: testcorenrn_bbcore::compare_results | |
| 78/115 Test #51: testcorenrn_bbcore::compare_results ................................ Passed 0.38 sec | |
| Start 57: testcorenrn_deriv::compare_results | |
| 79/115 Test #57: testcorenrn_deriv::compare_results ................................. Passed 0.63 sec | |
| Start 63: testcorenrn_gf::compare_results | |
| 80/115 Test #63: testcorenrn_gf::compare_results .................................... Passed 0.30 sec | |
| Start 68: testcorenrn_patstim::compare_results | |
| 81/115 Test #68: testcorenrn_patstim::compare_results ............................... Passed 0.19 sec | |
| Start 74: testcorenrn_vecplay::compare_results | |
| 82/115 Test #74: testcorenrn_vecplay::compare_results ............................... Passed 0.08 sec | |
| Start 86: testcorenrn_watch::compare_results | |
| 83/115 Test #86: testcorenrn_watch::compare_results ................................. Passed 0.12 sec | |
| Start 92: testcorenrn_conc::compare_results | |
| 84/115 Test #92: testcorenrn_conc::compare_results .................................. Passed 0.07 sec | |
| Start 98: testcorenrn_kin::compare_results | |
| 85/115 Test #98: testcorenrn_kin::compare_results ................................... Passed 0.07 sec | |
| Start 101: testcorenrn_netstimdirect::compare_results | |
| 86/115 Test #101: testcorenrn_netstimdirect::compare_results ......................... Passed 0.07 sec | |
| Start 106: channel_benchmark_hippo::compare_results | |
| 87/115 Test #106: channel_benchmark_hippo::compare_results ........................... Passed 0.07 sec | |
| 88/115 Test #108: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 132.53 sec | |
| Start 31: coreneuron_modtests::spikes_mpi_py_cpu | |
| 89/115 Test #25: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 81.85 sec | |
| 90/115 Test #23: coreneuron_modtests::datareturn_py_cpu ............................. Passed 86.88 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 91/115 Test #107: channel_benchmark_sscx::neuron ..................................... Passed 133.76 sec | |
| 92/115 Test #32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 3.01 sec | |
| Start 33: coreneuron_modtests::inputpresyn_py_cpu | |
| 93/115 Test #109: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 135.87 sec | |
| Start 110: channel_benchmark_sscx::compare_results | |
| 94/115 Test #110: channel_benchmark_sscx::compare_results ............................ Passed 0.07 sec | |
| 95/115 Test #27: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 45.72 sec | |
| 96/115 Test #28: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 37.57 sec | |
| Start 75: testcorenrn_vecevent::neuron | |
| 97/115 Test #29: coreneuron_modtests::test_ba_py_cpu ................................ Passed 35.03 sec | |
| 98/115 Test #26: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 55.19 sec | |
| 99/115 Test #33: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 5.12 sec | |
| Start 76: testcorenrn_vecevent::coreneuron_cpu_online | |
| 100/115 Test #30: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 37.26 sec | |
| 101/115 Test #31: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 12.10 sec | |
| 102/115 Test #75: testcorenrn_vecevent::neuron ....................................... Passed 6.66 sec | |
| Start 44: external_ringtest::coreneuron_cpu_mpi_threads | |
| 103/115 Test #44: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 7.18 sec | |
| Start 77: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| Start 45: external_ringtest::compare_results | |
| 104/115 Test #45: external_ringtest::compare_results ................................. Passed 0.09 sec | |
| 105/115 Test #77: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 13.11 sec | |
| Start 78: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 106/115 Test #36: reduced_dentate::coreneuron_cpu .................................... Passed 136.83 sec | |
| Start 111: olfactory-bulb-3d::neuron | |
| Start 37: reduced_dentate::compare_results | |
| 107/115 Test #37: reduced_dentate::compare_results ................................... Passed 0.08 sec | |
| 108/115 Test #78: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 3.67 sec | |
| Start 113: olfactory-bulb-3d::coreneuron_cpu_online | |
| 109/115 Test #76: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 78.12 sec | |
| Start 80: testcorenrn_vecevent::compare_results | |
| 110/115 Test #80: testcorenrn_vecevent::compare_results .............................. Passed 0.09 sec | |
| 111/115 Test #111: olfactory-bulb-3d::neuron .......................................... Passed 161.58 sec | |
| 112/115 Test #113: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 223.53 sec | |
| Start 115: olfactory-bulb-3d::compare_results | |
| 113/115 Test #115: olfactory-bulb-3d::compare_results ................................. Passed 0.19 sec | |
| 114/115 Test #34: external_nrntest ................................................... Passed 584.20 sec | |
| Start 102: tqperf::coreneuron | |
| 115/115 Test #102: tqperf::coreneuron ................................................. Passed 11.49 sec | |
| 100% tests passed, 0 tests failed out of 115 | |
| Total Test time (real) = 796.57 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646827888:step_script [0Ksection_start:1646827888:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=290759 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179982 responseStatus[0;m=201 Created token[0;m=cxotevdE | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=290817 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179982 responseStatus[0;m=201 Created token[0;m=cxotevdE | |
| section_end:1646827890:upload_artifacts_on_success [0Ksection_start:1646827890:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646827892:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646827341:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646827341:resolve_secrets [0Ksection_start:1646827341:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor815512809, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179979 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179979_PROD_P112_CP4_C2 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 319699 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J179979_PROD_P112_CP4_C2 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=16 --jobid=319699 --cpus-per-task=1 --mem=76G | |
| section_end:1646827390:prepare_executor [0Ksection_start:1646827390:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1646827394:prepare_script [0Ksection_start:1646827394:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646827395:get_sources [0Ksection_start:1646827395:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:nvhpc:acc (179968)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=205826 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179968 responseStatus[0;m=200 OK token[0;m=mYR7bDZN | |
| section_end:1646827396:download_artifacts [0Ksection_start:1646827396:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n17 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220309-1203 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179968/spack-build/spack-stage-neuron-develop-b3uxm6bweygovmzordzjkevzwfwfbb7k/spack-build-b3uxm6b | |
| Start 61: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 66: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 73: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 77: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 83: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 87: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 93: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 97: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 102: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| Start 105: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 141: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| 1/179 Test #73: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 7.97 sec | |
| Start 145: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/179 Test #83: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 9.12 sec | |
| Start 151: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| 3/179 Test #93: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 9.35 sec | |
| Start 111: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 4/179 Test #102: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 9.50 sec | |
| Start 155: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 5/179 Test #77: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 9.66 sec | |
| Start 56: external_ringtest::neuron | |
| 6/179 Test #141: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 10.36 sec | |
| Start 69: testcorenrn_bbcore::neuron | |
| 7/179 Test #87: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 10.73 sec | |
| Start 70: testcorenrn_bbcore::coreneuron_gpu_online | |
| 8/179 Test #97: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 11.07 sec | |
| Start 115: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 9/179 Test #105: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 11.35 sec | |
| Start 131: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 10/179 Test #56: external_ringtest::neuron .......................................... Passed 10.65 sec | |
| Start 71: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 11/179 Test #69: testcorenrn_bbcore::neuron ......................................... Passed 9.65 sec | |
| Start 72: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 12/179 Test #155: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 11.12 sec | |
| Start 74: testcorenrn_bbcore::coreneuron_cpu_online | |
| 13/179 Test #145: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 12.63 sec | |
| Start 75: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 14/179 Test #151: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 11.74 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 15/179 Test #111: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 11.69 sec | |
| Start 135: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 16/179 Test #115: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 9.96 sec | |
| Start 57: external_ringtest::neuron_mpi | |
| 17/179 Test #131: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 9.80 sec | |
| Start 58: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 18/179 Test #135: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.33 sec | |
| Start 59: external_ringtest::coreneuron_cpu_mpi | |
| 19/179 Test #57: external_ringtest::neuron_mpi ...................................... Passed 3.43 sec | |
| Start 63: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 20/179 Test #61: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 51.39 sec | |
| Start 60: external_ringtest::coreneuron_cpu_mpi_offline | |
| 21/179 Test #66: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 51.64 sec | |
| Start 64: external_ringtest::coreneuron_gpu_mpi | |
| 22/179 Test #70: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 41.39 sec | |
| Start 79: testcorenrn_deriv::neuron | |
| 23/179 Test #79: testcorenrn_deriv::neuron .......................................... Passed 1.91 sec | |
| Start 80: testcorenrn_deriv::coreneuron_gpu_online | |
| 24/179 Test #72: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 35.71 sec | |
| Start 81: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 25/179 Test #75: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 37.66 sec | |
| Start 82: testcorenrn_deriv::coreneuron_gpu_offline | |
| 26/179 Test #76: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 37.68 sec | |
| Start 84: testcorenrn_deriv::coreneuron_cpu_online | |
| 27/179 Test #74: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 37.94 sec | |
| Start 85: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 28/179 Test #59: external_ringtest::coreneuron_cpu_mpi .............................. Passed 35.45 sec | |
| Start 65: external_ringtest::coreneuron_gpu_mpi_offline | |
| 29/179 Test #71: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 51.91 sec | |
| Start 86: testcorenrn_deriv::coreneuron_cpu_offline | |
| 30/179 Test #60: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 44.07 sec | |
| Start 89: testcorenrn_gf::neuron | |
| 31/179 Test #85: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 36.93 sec | |
| Start 100: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 32/179 Test #64: external_ringtest::coreneuron_gpu_mpi .............................. Passed 44.43 sec | |
| Start 90: testcorenrn_gf::coreneuron_gpu_online | |
| 33/179 Test #80: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 41.95 sec | |
| Start 101: testcorenrn_patstim::coreneuron_gpu_offline | |
| 34/179 Test #65: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 37.25 sec | |
| Start 91: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 35/179 Test #84: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 37.60 sec | |
| Start 137: testcorenrn_conc::neuron | |
| 36/179 Test #82: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 37.76 sec | |
| Start 138: testcorenrn_conc::coreneuron_gpu_online | |
| 37/179 Test #89: testcorenrn_gf::neuron ............................................. Passed 3.05 sec | |
| Start 92: testcorenrn_gf::coreneuron_gpu_offline | |
| 38/179 Test #137: testcorenrn_conc::neuron ........................................... Passed 3.59 sec | |
| Start 139: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 39/179 Test #81: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 49.11 sec | |
| Start 140: testcorenrn_conc::coreneuron_gpu_offline | |
| 40/179 Test #86: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 44.07 sec | |
| Start 142: testcorenrn_conc::coreneuron_cpu_online | |
| 41/179 Test #101: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 42.24 sec | |
| Start 143: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 42/179 Test #140: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 33.68 sec | |
| Start 144: testcorenrn_conc::coreneuron_cpu_offline | |
| 43/179 Test #138: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 43.50 sec | |
| Start 147: testcorenrn_kin::neuron | |
| 44/179 Test #147: testcorenrn_kin::neuron ............................................ Passed 1.61 sec | |
| Start 148: testcorenrn_kin::coreneuron_gpu_online | |
| 45/179 Test #92: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 42.93 sec | |
| Start 94: testcorenrn_gf::coreneuron_cpu_online | |
| 46/179 Test #90: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 45.91 sec | |
| Start 95: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 47/179 Test #139: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 61.60 sec | |
| Start 149: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 48/179 Test #91: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 65.41 sec | |
| Start 96: testcorenrn_gf::coreneuron_cpu_offline | |
| 49/179 Test #142: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 51.13 sec | |
| Start 150: testcorenrn_kin::coreneuron_gpu_offline | |
| 50/179 Test #63: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 155.95 sec | |
| Start 99: testcorenrn_patstim::neuron | |
| 51/179 Test #144: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 41.80 sec | |
| Start 152: testcorenrn_kin::coreneuron_cpu_online | |
| 52/179 Test #143: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 42.33 sec | |
| Start 153: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 53/179 Test #58: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 159.17 sec | |
| Start 103: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 54/179 Test #100: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 85.10 sec | |
| Start 154: testcorenrn_kin::coreneuron_cpu_offline | |
| 55/179 Test #148: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 43.10 sec | |
| Start 161: channel_benchmark_hippo::neuron | |
| 56/179 Test #99: testcorenrn_patstim::neuron ........................................ Passed 3.98 sec | |
| Start 104: testcorenrn_patstim::coreneuron_cpu_offline | |
| 57/179 Test #94: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 43.18 sec | |
| Start 107: testcorenrn_vecplay::neuron | |
| 58/179 Test #95: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 64.93 sec | |
| Start 108: testcorenrn_vecplay::coreneuron_gpu_online | |
| 59/179 Test #161: channel_benchmark_hippo::neuron .................................... Passed 25.47 sec | |
| Start 162: channel_benchmark_hippo::coreneuron_gpu_online | |
| 60/179 Test #96: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 52.81 sec | |
| Start 109: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 61/179 Test #150: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 56.24 sec | |
| Start 163: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 62/179 Test #154: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 49.26 sec | |
| Start 164: channel_benchmark_hippo::coreneuron_cpu_online | |
| 63/179 Test #153: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 49.35 sec | |
| Start 165: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 64/179 Test #152: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 49.52 sec | |
| Start 167: channel_benchmark_sscx::neuron | |
| 65/179 Test #104: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 45.76 sec | |
| Start 110: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 66/179 Test #149: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 69.15 sec | |
| Start 168: channel_benchmark_sscx::coreneuron_gpu_online | |
| 67/179 Test #108: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 59.03 sec | |
| Start 112: testcorenrn_vecplay::coreneuron_cpu_online | |
| 68/179 Test #110: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 53.75 sec | |
| Start 113: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 69/179 Test #107: testcorenrn_vecplay::neuron ........................................ Passed 101.22 sec | |
| Start 114: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 70/179 Test #162: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 82.18 sec | |
| Start 169: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 71/179 Test #109: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 77.96 sec | |
| Start 127: testcorenrn_watch::neuron | |
| 72/179 Test #127: testcorenrn_watch::neuron .......................................... Passed 7.86 sec | |
| Start 128: testcorenrn_watch::coreneuron_gpu_online | |
| 73/179 Test #112: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 45.88 sec | |
| Start 129: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 74/179 Test #114: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 58.70 sec | |
| Start 130: testcorenrn_watch::coreneuron_gpu_offline | |
| 75/179 Test #167: channel_benchmark_sscx::neuron ..................................... Passed 122.45 sec | |
| Start 170: channel_benchmark_sscx::coreneuron_cpu_online | |
| 76/179 Test #113: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 69.21 sec | |
| Start 132: testcorenrn_watch::coreneuron_cpu_online | |
| 77/179 Test #128: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 59.00 sec | |
| Start 133: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 78/179 Test #129: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 71.47 sec | |
| Start 134: testcorenrn_watch::coreneuron_cpu_offline | |
| 79/179 Test #163: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 159.86 sec | |
| Start 171: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 80/179 Test #168: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 153.12 sec | |
| Start 1: testneuron | |
| 81/179 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 82/179 Test #2: ringtest ........................................................... Passed 0.28 sec | |
| Start 3: connect_dend | |
| 83/179 Test #3: connect_dend ....................................................... Passed 0.18 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 84/179 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.37 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 85/179 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.23 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 86/179 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.88 sec | |
| Start 7: mpi_init::python_mpienv | |
| 87/179 Test #7: mpi_init::python_mpienv ............................................ Passed 2.21 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 88/179 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.86 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 89/179 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.64 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 90/179 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.45 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 91/179 Test #103: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 213.95 sec | |
| Start 157: testcorenrn_netstimdirect::direct_netstimdirect | |
| 92/179 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 3.54 sec | |
| Start 12: pynrn_tests::basic_tests | |
| 93/179 Test #164: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 168.74 sec | |
| Start 13: parallel_tests | |
| 94/179 Test #165: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 168.76 sec | |
| Start 14: parallel_partrans | |
| 95/179 Test #130: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 54.46 sec | |
| Start 158: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 96/179 Test #14: parallel_partrans .................................................. Passed 8.27 sec | |
| Start 15: parallel_netpar | |
| 97/179 Test #13: parallel_tests ..................................................... Passed 9.40 sec | |
| Start 16: parallel_bas | |
| 98/179 Test #132: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 55.35 sec | |
| Start 17: coreneuron_modtests::fornetcon_py_cpu | |
| Start 18: coreneuron_modtests::direct_py_cpu | |
| 99/179 Test #169: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 116.84 sec | |
| Start 19: coreneuron_modtests::direct_hoc_cpu | |
| 100/179 Test #133: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 50.24 sec | |
| Start 20: coreneuron_modtests::spikes_py_cpu | |
| Start 21: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 101/179 Test #12: pynrn_tests::basic_tests ........................................... Passed 15.41 sec | |
| Start 22: coreneuron_modtests::fast_imem_py_cpu | |
| 102/179 Test #15: parallel_netpar .................................................... Passed 5.91 sec | |
| Start 23: coreneuron_modtests::datareturn_py_cpu | |
| 103/179 Test #22: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 5.43 sec | |
| Start 24: coreneuron_modtests::test_units_py_cpu | |
| 104/179 Test #16: parallel_bas ....................................................... Passed 13.38 sec | |
| Start 25: coreneuron_modtests::test_netmove_py_cpu | |
| 105/179 Test #134: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 38.29 sec | |
| Start 26: coreneuron_modtests::test_pointer_py_cpu | |
| Start 27: coreneuron_modtests::test_watchrange_py_cpu | |
| 106/179 Test #170: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 73.01 sec | |
| Start 28: coreneuron_modtests::test_psolve_py_cpu | |
| 107/179 Test #157: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 34.56 sec | |
| Start 29: coreneuron_modtests::test_ba_py_cpu | |
| Start 30: coreneuron_modtests::test_natrans_py_cpu | |
| 108/179 Test #158: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 31.44 sec | |
| Start 31: coreneuron_modtests::spikes_mpi_py_cpu | |
| 109/179 Test #19: coreneuron_modtests::direct_hoc_cpu ................................ Passed 22.76 sec | |
| Start 34: coreneuron_modtests::fornetcon_py_gpu | |
| 110/179 Test #18: coreneuron_modtests::direct_py_cpu ................................. Passed 23.36 sec | |
| Start 35: coreneuron_modtests::direct_py_gpu | |
| 111/179 Test #17: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 23.69 sec | |
| Start 36: coreneuron_modtests::direct_hoc_gpu | |
| 112/179 Test #20: coreneuron_modtests::spikes_py_cpu ................................. Passed 22.94 sec | |
| Start 37: coreneuron_modtests::spikes_py_gpu | |
| 113/179 Test #21: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 23.18 sec | |
| Start 38: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 114/179 Test #24: coreneuron_modtests::test_units_py_cpu ............................. Passed 17.94 sec | |
| Start 39: coreneuron_modtests::fast_imem_py_gpu | |
| 115/179 Test #27: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 14.64 sec | |
| Start 40: coreneuron_modtests::datareturn_py_gpu | |
| 116/179 Test #23: coreneuron_modtests::datareturn_py_cpu ............................. Passed 23.37 sec | |
| Start 41: coreneuron_modtests::test_units_py_gpu | |
| 117/179 Test #25: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 14.86 sec | |
| Start 42: coreneuron_modtests::test_netmove_py_gpu | |
| 118/179 Test #171: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 54.61 sec | |
| Start 43: coreneuron_modtests::test_pointer_py_gpu | |
| 119/179 Test #28: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 13.47 sec | |
| Start 44: coreneuron_modtests::test_watchrange_py_gpu | |
| 120/179 Test #30: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 11.03 sec | |
| Start 45: coreneuron_modtests::test_psolve_py_gpu | |
| 121/179 Test #29: coreneuron_modtests::test_ba_py_cpu ................................ Passed 11.65 sec | |
| Start 46: coreneuron_modtests::test_ba_py_gpu | |
| 122/179 Test #34: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 9.83 sec | |
| Start 47: coreneuron_modtests::test_natrans_py_gpu | |
| 123/179 Test #31: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 11.23 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 124/179 Test #35: coreneuron_modtests::direct_py_gpu ................................. Passed 11.08 sec | |
| Start 51: external_nrntest | |
| 125/179 Test #37: coreneuron_modtests::spikes_py_gpu ................................. Passed 11.06 sec | |
| Start 78: testcorenrn_bbcore::compare_results | |
| 126/179 Test #38: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 12.56 sec | |
| Start 88: testcorenrn_deriv::compare_results | |
| 127/179 Test #36: coreneuron_modtests::direct_hoc_gpu ................................ Passed 15.02 sec | |
| Start 98: testcorenrn_gf::compare_results | |
| 128/179 Test #78: testcorenrn_bbcore::compare_results ................................ Passed 5.69 sec | |
| Start 106: testcorenrn_patstim::compare_results | |
| 129/179 Test #88: testcorenrn_deriv::compare_results ................................. Passed 4.84 sec | |
| Start 116: testcorenrn_vecplay::compare_results | |
| 130/179 Test #98: testcorenrn_gf::compare_results .................................... Passed 4.12 sec | |
| Start 136: testcorenrn_watch::compare_results | |
| 131/179 Test #41: coreneuron_modtests::test_units_py_gpu ............................. Passed 16.47 sec | |
| Start 146: testcorenrn_conc::compare_results | |
| 132/179 Test #106: testcorenrn_patstim::compare_results ............................... Passed 4.67 sec | |
| Start 156: testcorenrn_kin::compare_results | |
| 133/179 Test #42: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 17.65 sec | |
| Start 159: testcorenrn_netstimdirect::compare_results | |
| 134/179 Test #116: testcorenrn_vecplay::compare_results ............................... Passed 4.90 sec | |
| Start 166: channel_benchmark_hippo::compare_results | |
| 135/179 Test #156: testcorenrn_kin::compare_results ................................... Passed 2.18 sec | |
| Start 172: channel_benchmark_sscx::compare_results | |
| 136/179 Test #47: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 14.58 sec | |
| 137/179 Test #136: testcorenrn_watch::compare_results ................................. Passed 4.87 sec | |
| Start 33: coreneuron_modtests::inputpresyn_py_cpu | |
| 138/179 Test #39: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 20.37 sec | |
| 139/179 Test #159: testcorenrn_netstimdirect::compare_results ......................... Passed 2.60 sec | |
| Start 48: coreneuron_modtests::spikes_mpi_py_gpu | |
| 140/179 Test #166: channel_benchmark_hippo::compare_results ........................... Passed 2.89 sec | |
| 141/179 Test #146: testcorenrn_conc::compare_results .................................. Passed 5.73 sec | |
| Start 49: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 142/179 Test #44: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 19.38 sec | |
| 143/179 Test #45: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 18.51 sec | |
| Start 50: coreneuron_modtests::inputpresyn_py_gpu | |
| 144/179 Test #40: coreneuron_modtests::datareturn_py_gpu ............................. Passed 23.11 sec | |
| 145/179 Test #172: channel_benchmark_sscx::compare_results ............................ Passed 4.17 sec | |
| 146/179 Test #26: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 38.90 sec | |
| 147/179 Test #46: coreneuron_modtests::test_ba_py_gpu ................................ Passed 22.53 sec | |
| Start 121: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 148/179 Test #32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 36.87 sec | |
| 149/179 Test #121: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 28.43 sec | |
| Start 125: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 150/179 Test #33: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 37.22 sec | |
| Start 174: olfactory-bulb-3d::neuron::preparation | |
| 151/179 Test #174: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.34 sec | |
| Start 176: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 152/179 Test #176: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.75 sec | |
| Start 178: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 153/179 Test #50: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 36.25 sec | |
| 154/179 Test #178: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 1.13 sec | |
| Start 52: reduced_dentate::neuron | |
| 155/179 Test #48: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 39.89 sec | |
| Start 53: reduced_dentate::coreneuron_cpu | |
| 156/179 Test #49: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 38.05 sec | |
| 157/179 Test #43: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 74.35 sec | |
| 158/179 Test #125: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 27.52 sec | |
| Start 54: reduced_dentate::coreneuron_gpu | |
| 159/179 Test #52: reduced_dentate::neuron ............................................ Passed 41.03 sec | |
| Start 62: external_ringtest::coreneuron_cpu_mpi_threads | |
| 160/179 Test #53: reduced_dentate::coreneuron_cpu .................................... Passed 66.65 sec | |
| Start 117: testcorenrn_vecevent::neuron | |
| 161/179 Test #117: testcorenrn_vecevent::neuron ....................................... Passed 2.66 sec | |
| Start 118: testcorenrn_vecevent::coreneuron_gpu_online | |
| 162/179 Test #62: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 69.88 sec | |
| Start 67: external_ringtest::coreneuron_gpu_mpi_threads | |
| 163/179 Test #54: reduced_dentate::coreneuron_gpu .................................... Passed 89.21 sec | |
| Start 119: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| Start 55: reduced_dentate::compare_results | |
| 164/179 Test #55: reduced_dentate::compare_results ................................... Passed 0.07 sec | |
| 165/179 Test #118: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 69.21 sec | |
| Start 120: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 166/179 Test #67: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 44.62 sec | |
| Start 122: testcorenrn_vecevent::coreneuron_cpu_online | |
| Start 68: external_ringtest::compare_results | |
| 167/179 Test #68: external_ringtest::compare_results ................................. Passed 0.62 sec | |
| 168/179 Test #51: external_nrntest ................................................... Passed 213.47 sec | |
| Start 123: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 169/179 Test #119: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 72.03 sec | |
| Start 124: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 170/179 Test #120: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 46.95 sec | |
| Start 173: olfactory-bulb-3d::neuron | |
| 171/179 Test #122: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 73.59 sec | |
| Start 175: olfactory-bulb-3d::coreneuron_gpu_online | |
| 172/179 Test #123: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 77.38 sec | |
| Start 177: olfactory-bulb-3d::coreneuron_cpu_online | |
| 173/179 Test #124: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 59.27 sec | |
| Start 126: testcorenrn_vecevent::compare_results | |
| 174/179 Test #126: testcorenrn_vecevent::compare_results .............................. Passed 0.18 sec | |
| 175/179 Test #173: olfactory-bulb-3d::neuron .......................................... Passed 130.90 sec | |
| 176/179 Test #175: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 118.56 sec | |
| 177/179 Test #177: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 115.64 sec | |
| Start 160: tqperf::coreneuron | |
| 178/179 Test #160: tqperf::coreneuron ................................................. Passed 29.40 sec | |
| Start 179: olfactory-bulb-3d::compare_results | |
| 179/179 Test #179: olfactory-bulb-3d::compare_results ................................. Passed 0.41 sec | |
| 100% tests passed, 0 tests failed out of 179 | |
| Total Test time (real) = 879.96 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646828307:step_script [0Ksection_start:1646828307:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=232372 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179979 responseStatus[0;m=201 Created token[0;m=nyd3NGv7 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=232435 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179979 responseStatus[0;m=201 Created token[0;m=nyd3NGv7 | |
| section_end:1646828309:upload_artifacts_on_success [0Ksection_start:1646828309:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646828310:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646827215:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646827215:resolve_secrets [0Ksection_start:1646827215:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor044789100, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179983 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179983_PROD_P112_CP5_C8 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 319695 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J179983_PROD_P112_CP5_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=16 --jobid=319695 --cpus-per-task=1 --mem=76G | |
| section_end:1646827263:prepare_executor [0Ksection_start:1646827263:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1646827266:prepare_script [0Ksection_start:1646827266:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646827267:get_sources [0Ksection_start:1646827267:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:intel (179972)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=198292 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179972 responseStatus[0;m=200 OK token[0;m=ZKSJTxkY | |
| section_end:1646827268:download_artifacts [0Ksection_start:1646827268:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n31 | |
| Build name: Linux-icpc | |
| Create new tag: 20220309-1201 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179972/spack-build/spack-stage-neuron-develop-7vuuxvdwm3mams7szrb4snbsppttef4h/spack-build-7vuuxvd | |
| Start 43: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 50: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 56: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 62: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 67: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 73: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 79: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| Start 85: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 1/114 Test #56: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.88 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/114 Test #50: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.99 sec | |
| Start 97: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 3/114 Test #67: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 3.04 sec | |
| Start 38: external_ringtest::neuron | |
| Start 46: testcorenrn_bbcore::neuron | |
| 4/114 Test #85: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 4.81 sec | |
| Start 39: external_ringtest::neuron_mpi | |
| 5/114 Test #62: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 5.28 sec | |
| Start 40: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 6/114 Test #73: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 5.35 sec | |
| Start 41: external_ringtest::coreneuron_cpu_mpi | |
| 7/114 Test #79: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 5.47 sec | |
| Start 111: olfactory-bulb-3d::neuron::preparation | |
| 8/114 Test #111: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 113: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 9/114 Test #97: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 2.55 sec | |
| Start 47: testcorenrn_bbcore::coreneuron_cpu_online | |
| 10/114 Test #91: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.69 sec | |
| Start 48: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 11/114 Test #113: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.04 sec | |
| Start 35: reduced_dentate::neuron | |
| 12/114 Test #43: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 5.66 sec | |
| Start 42: external_ringtest::coreneuron_cpu_mpi_offline | |
| 13/114 Test #38: external_ringtest::neuron .......................................... Passed 3.29 sec | |
| Start 49: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 14/114 Test #39: external_ringtest::neuron_mpi ...................................... Passed 3.47 sec | |
| Start 52: testcorenrn_deriv::neuron | |
| Start 53: testcorenrn_deriv::coreneuron_cpu_online | |
| 15/114 Test #46: testcorenrn_bbcore::neuron ......................................... Passed 6.29 sec | |
| Start 54: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 16/114 Test #42: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 4.01 sec | |
| Start 55: testcorenrn_deriv::coreneuron_cpu_offline | |
| Start 87: testcorenrn_conc::neuron | |
| 17/114 Test #47: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 5.11 sec | |
| Start 88: testcorenrn_conc::coreneuron_cpu_online | |
| 18/114 Test #49: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 4.55 sec | |
| Start 89: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 19/114 Test #52: testcorenrn_deriv::neuron .......................................... Passed 2.87 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_offline | |
| 20/114 Test #55: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.91 sec | |
| Start 93: testcorenrn_kin::neuron | |
| 21/114 Test #48: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 6.08 sec | |
| Start 94: testcorenrn_kin::coreneuron_cpu_online | |
| 22/114 Test #87: testcorenrn_conc::neuron ........................................... Passed 2.32 sec | |
| Start 95: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 23/114 Test #53: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 4.08 sec | |
| Start 96: testcorenrn_kin::coreneuron_cpu_offline | |
| 24/114 Test #90: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.85 sec | |
| Start 102: channel_benchmark_hippo::neuron | |
| 25/114 Test #54: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.08 sec | |
| Start 103: channel_benchmark_hippo::coreneuron_cpu_online | |
| 26/114 Test #93: testcorenrn_kin::neuron ............................................ Passed 2.34 sec | |
| Start 104: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 27/114 Test #88: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 3.94 sec | |
| Start 106: channel_benchmark_sscx::neuron | |
| 28/114 Test #96: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 4.76 sec | |
| Start 107: channel_benchmark_sscx::coreneuron_cpu_online | |
| 29/114 Test #94: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 6.61 sec | |
| Start 108: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 30/114 Test #41: external_ringtest::coreneuron_cpu_mpi .............................. Passed 14.73 sec | |
| Start 58: testcorenrn_gf::neuron | |
| 31/114 Test #89: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 10.26 sec | |
| Start 1: testneuron | |
| 32/114 Test #1: testneuron ......................................................... Passed 0.16 sec | |
| Start 2: ringtest | |
| 33/114 Test #95: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 12.84 sec | |
| Start 3: connect_dend | |
| 34/114 Test #2: ringtest ........................................................... Passed 4.25 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 35/114 Test #3: connect_dend ....................................................... Passed 0.71 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 36/114 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 3.55 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 37/114 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 4.23 sec | |
| Start 7: mpi_init::python_mpienv | |
| 38/114 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 3.76 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 39/114 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.85 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 40/114 Test #7: mpi_init::python_mpienv ............................................ Passed 5.60 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 41/114 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 4.21 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 42/114 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 4.52 sec | |
| Start 12: pynrn_tests::basic_tests | |
| 43/114 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 4.99 sec | |
| Start 13: parallel_tests | |
| 44/114 Test #12: pynrn_tests::basic_tests ........................................... Passed 7.42 sec | |
| Start 14: parallel_partrans | |
| 45/114 Test #58: testcorenrn_gf::neuron ............................................. Passed 45.53 sec | |
| Start 59: testcorenrn_gf::coreneuron_cpu_online | |
| 46/114 Test #40: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 61.63 sec | |
| Start 60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 47/114 Test #59: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 14.73 sec | |
| Start 61: testcorenrn_gf::coreneuron_cpu_offline | |
| 48/114 Test #61: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 11.46 sec | |
| Start 64: testcorenrn_patstim::neuron | |
| 49/114 Test #64: testcorenrn_patstim::neuron ........................................ Passed 4.37 sec | |
| Start 65: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 50/114 Test #60: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 32.14 sec | |
| Start 66: testcorenrn_patstim::coreneuron_cpu_offline | |
| 51/114 Test #66: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 5.63 sec | |
| Start 69: testcorenrn_vecplay::neuron | |
| 52/114 Test #69: testcorenrn_vecplay::neuron ........................................ Passed 4.92 sec | |
| Start 70: testcorenrn_vecplay::coreneuron_cpu_online | |
| 53/114 Test #65: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 14.03 sec | |
| Start 71: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 54/114 Test #14: parallel_partrans .................................................. Passed 56.22 sec | |
| Start 15: parallel_netpar | |
| 55/114 Test #13: parallel_tests ..................................................... Passed 61.53 sec | |
| Start 16: parallel_bas | |
| 56/114 Test #70: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 9.21 sec | |
| Start 72: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 57/114 Test #15: parallel_netpar .................................................... Passed 10.03 sec | |
| Start 17: coreneuron_modtests::fornetcon_py_cpu | |
| 58/114 Test #72: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 6.91 sec | |
| Start 81: testcorenrn_watch::neuron | |
| 59/114 Test #71: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 18.95 sec | |
| Start 82: testcorenrn_watch::coreneuron_cpu_online | |
| 60/114 Test #81: testcorenrn_watch::neuron .......................................... Passed 4.86 sec | |
| Start 83: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 61/114 Test #82: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 10.79 sec | |
| Start 84: testcorenrn_watch::coreneuron_cpu_offline | |
| 62/114 Test #17: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 16.13 sec | |
| Start 18: coreneuron_modtests::direct_py_cpu | |
| 63/114 Test #84: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 5.90 sec | |
| Start 99: testcorenrn_netstimdirect::direct_netstimdirect | |
| 64/114 Test #83: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 18.49 sec | |
| Start 100: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 65/114 Test #16: parallel_bas ....................................................... Passed 37.50 sec | |
| Start 19: coreneuron_modtests::direct_hoc_cpu | |
| 66/114 Test #99: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 10.40 sec | |
| Start 20: coreneuron_modtests::spikes_py_cpu | |
| Start 21: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 67/114 Test #100: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 13.33 sec | |
| Start 22: coreneuron_modtests::fast_imem_py_cpu | |
| Start 23: coreneuron_modtests::datareturn_py_cpu | |
| 68/114 Test #18: coreneuron_modtests::direct_py_cpu ................................. Passed 22.46 sec | |
| Start 24: coreneuron_modtests::test_units_py_cpu | |
| 69/114 Test #19: coreneuron_modtests::direct_hoc_cpu ................................ Passed 20.68 sec | |
| Start 25: coreneuron_modtests::test_netmove_py_cpu | |
| 70/114 Test #107: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 173.59 sec | |
| Start 26: coreneuron_modtests::test_pointer_py_cpu | |
| 71/114 Test #106: channel_benchmark_sscx::neuron ..................................... Passed 179.59 sec | |
| Start 27: coreneuron_modtests::test_watchrange_py_cpu | |
| 72/114 Test #108: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 176.61 sec | |
| Start 28: coreneuron_modtests::test_psolve_py_cpu | |
| 73/114 Test #35: reduced_dentate::neuron ............................................ Passed 189.37 sec | |
| Start 36: reduced_dentate::coreneuron_cpu | |
| 74/114 Test #103: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 182.13 sec | |
| Start 29: coreneuron_modtests::test_ba_py_cpu | |
| 75/114 Test #102: channel_benchmark_hippo::neuron .................................... Passed 183.20 sec | |
| Start 30: coreneuron_modtests::test_natrans_py_cpu | |
| 76/114 Test #104: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 185.38 sec | |
| Start 34: external_nrntest | |
| 77/114 Test #21: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 49.27 sec | |
| Start 51: testcorenrn_bbcore::compare_results | |
| 78/114 Test #51: testcorenrn_bbcore::compare_results ................................ Passed 0.09 sec | |
| Start 57: testcorenrn_deriv::compare_results | |
| 79/114 Test #20: coreneuron_modtests::spikes_py_cpu ................................. Passed 49.95 sec | |
| Start 63: testcorenrn_gf::compare_results | |
| 80/114 Test #57: testcorenrn_deriv::compare_results ................................. Passed 0.62 sec | |
| Start 68: testcorenrn_patstim::compare_results | |
| 81/114 Test #63: testcorenrn_gf::compare_results .................................... Passed 0.30 sec | |
| Start 74: testcorenrn_vecplay::compare_results | |
| 82/114 Test #68: testcorenrn_patstim::compare_results ............................... Passed 0.39 sec | |
| Start 86: testcorenrn_watch::compare_results | |
| 83/114 Test #74: testcorenrn_vecplay::compare_results ............................... Passed 0.73 sec | |
| Start 92: testcorenrn_conc::compare_results | |
| 84/114 Test #86: testcorenrn_watch::compare_results ................................. Passed 0.61 sec | |
| Start 98: testcorenrn_kin::compare_results | |
| 85/114 Test #22: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 45.32 sec | |
| Start 101: testcorenrn_netstimdirect::compare_results | |
| 86/114 Test #24: coreneuron_modtests::test_units_py_cpu ............................. Passed 43.58 sec | |
| Start 105: channel_benchmark_hippo::compare_results | |
| 87/114 Test #98: testcorenrn_kin::compare_results ................................... Passed 0.83 sec | |
| Start 109: channel_benchmark_sscx::compare_results | |
| 88/114 Test #92: testcorenrn_conc::compare_results .................................. Passed 0.89 sec | |
| 89/114 Test #101: testcorenrn_netstimdirect::compare_results ......................... Passed 0.50 sec | |
| Start 31: coreneuron_modtests::spikes_mpi_py_cpu | |
| 90/114 Test #105: channel_benchmark_hippo::compare_results ........................... Passed 0.52 sec | |
| 91/114 Test #109: channel_benchmark_sscx::compare_results ............................ Passed 0.59 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 92/114 Test #23: coreneuron_modtests::datareturn_py_cpu ............................. Passed 48.43 sec | |
| 93/114 Test #25: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 38.28 sec | |
| Start 33: coreneuron_modtests::inputpresyn_py_cpu | |
| 94/114 Test #32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 5.67 sec | |
| 95/114 Test #27: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 20.49 sec | |
| 96/114 Test #28: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 20.42 sec | |
| Start 75: testcorenrn_vecevent::neuron | |
| 97/114 Test #30: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 19.06 sec | |
| 98/114 Test #29: coreneuron_modtests::test_ba_py_cpu ................................ Passed 20.22 sec | |
| 99/114 Test #31: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 7.82 sec | |
| Start 76: testcorenrn_vecevent::coreneuron_cpu_online | |
| 100/114 Test #26: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 28.33 sec | |
| 101/114 Test #75: testcorenrn_vecevent::neuron ....................................... Passed 5.63 sec | |
| Start 77: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 102/114 Test #76: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 8.94 sec | |
| Start 78: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 103/114 Test #78: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 5.19 sec | |
| Start 110: olfactory-bulb-3d::neuron | |
| 104/114 Test #33: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 19.20 sec | |
| 105/114 Test #77: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 19.66 sec | |
| Start 44: external_ringtest::coreneuron_cpu_mpi_threads | |
| Start 80: testcorenrn_vecevent::compare_results | |
| 106/114 Test #80: testcorenrn_vecevent::compare_results .............................. Passed 0.08 sec | |
| 107/114 Test #44: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 7.38 sec | |
| Start 112: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 45: external_ringtest::compare_results | |
| 108/114 Test #45: external_ringtest::compare_results ................................. Passed 0.09 sec | |
| 109/114 Test #36: reduced_dentate::coreneuron_cpu .................................... Passed 57.13 sec | |
| Start 37: reduced_dentate::compare_results | |
| 110/114 Test #37: reduced_dentate::compare_results ................................... Passed 0.12 sec | |
| 111/114 Test #110: olfactory-bulb-3d::neuron .......................................... Passed 179.99 sec | |
| 112/114 Test #112: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 164.67 sec | |
| Start 114: olfactory-bulb-3d::compare_results | |
| 113/114 Test #114: olfactory-bulb-3d::compare_results ................................. Passed 0.20 sec | |
| 114/114 Test #34: external_nrntest ................................................... Passed 222.50 sec | |
| 100% tests passed, 0 tests failed out of 114 | |
| Total Test time (real) = 421.89 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646827725:step_script [0Ksection_start:1646827725:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=206719 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179983 responseStatus[0;m=201 Created token[0;m=c_M6Txze | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=206774 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179983 responseStatus[0;m=201 Created token[0;m=c_M6Txze | |
| section_end:1646827727:upload_artifacts_on_success [0Ksection_start:1646827727:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646827728:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646828862:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646828862:resolve_secrets [0Ksection_start:1646828862:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor371090236, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179981 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179981_PROD_P112_CP2_C3 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 319715 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J179981_PROD_P112_CP2_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=16 --jobid=319715 --cpus-per-task=1 --mem=76G | |
| section_end:1646828953:prepare_executor [0Ksection_start:1646828953:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1646828956:prepare_script [0Ksection_start:1646828956:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646828958:get_sources [0Ksection_start:1646828958:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:acc (179970)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=245268 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179970 responseStatus[0;m=200 OK token[0;m=NmQw1Qfg | |
| section_end:1646828960:download_artifacts [0Ksection_start:1646828960:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n17 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220309-1230 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179970/spack-build/spack-stage-neuron-develop-dwkjkuknoiprgdt5yhhj7uooz4rce2vl/spack-build-dwkjkuk | |
| Start 61: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 66: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 73: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 77: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 83: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 87: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 93: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 97: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 102: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| Start 105: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 56: external_ringtest::neuron | |
| 1/158 Test #102: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 5.28 sec | |
| Start 69: testcorenrn_bbcore::neuron | |
| 2/158 Test #77: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 7.17 sec | |
| Start 70: testcorenrn_bbcore::coreneuron_gpu_online | |
| 3/158 Test #87: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 7.20 sec | |
| Start 71: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 4/158 Test #93: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 7.65 sec | |
| Start 111: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 5/158 Test #73: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 8.03 sec | |
| Start 72: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 6/158 Test #105: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 8.34 sec | |
| Start 115: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 7/158 Test #83: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 8.53 sec | |
| Start 74: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/158 Test #97: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 9.48 sec | |
| Start 131: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 9/158 Test #56: external_ringtest::neuron .......................................... Passed 10.40 sec | |
| Start 75: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 10/158 Test #69: testcorenrn_bbcore::neuron ......................................... Passed 5.65 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/158 Test #61: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 11.20 sec | |
| Start 135: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 12/158 Test #66: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 12.12 sec | |
| Start 57: external_ringtest::neuron_mpi | |
| 13/158 Test #72: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 4.24 sec | |
| Start 79: testcorenrn_deriv::neuron | |
| 14/158 Test #111: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 6.16 sec | |
| Start 58: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 15/158 Test #115: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 5.56 sec | |
| Start 59: external_ringtest::coreneuron_cpu_mpi | |
| 16/158 Test #131: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 5.66 sec | |
| Start 60: external_ringtest::coreneuron_cpu_mpi_offline | |
| 17/158 Test #70: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 8.31 sec | |
| Start 80: testcorenrn_deriv::coreneuron_gpu_online | |
| 18/158 Test #79: testcorenrn_deriv::neuron .......................................... Passed 3.29 sec | |
| Start 81: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 19/158 Test #76: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 4.73 sec | |
| Start 82: testcorenrn_deriv::coreneuron_gpu_offline | |
| 20/158 Test #74: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 7.94 sec | |
| Start 84: testcorenrn_deriv::coreneuron_cpu_online | |
| 21/158 Test #135: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 5.45 sec | |
| Start 63: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 22/158 Test #71: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 10.29 sec | |
| Start 85: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 23/158 Test #75: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 7.25 sec | |
| Start 86: testcorenrn_deriv::coreneuron_cpu_offline | |
| 24/158 Test #57: external_ringtest::neuron_mpi ...................................... Passed 9.20 sec | |
| Start 64: external_ringtest::coreneuron_gpu_mpi | |
| 25/158 Test #86: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 3.88 sec | |
| Start 100: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 26/158 Test #60: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 8.27 sec | |
| Start 65: external_ringtest::coreneuron_gpu_mpi_offline | |
| 27/158 Test #82: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 7.91 sec | |
| Start 101: testcorenrn_patstim::coreneuron_gpu_offline | |
| 28/158 Test #59: external_ringtest::coreneuron_cpu_mpi .............................. Passed 27.57 sec | |
| Start 89: testcorenrn_gf::neuron | |
| 29/158 Test #84: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 27.22 sec | |
| Start 140: channel_benchmark_hippo::neuron | |
| 30/158 Test #85: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 27.95 sec | |
| Start 141: channel_benchmark_hippo::coreneuron_gpu_online | |
| 31/158 Test #80: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 30.06 sec | |
| Start 142: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 32/158 Test #81: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 32.65 sec | |
| Start 143: channel_benchmark_hippo::coreneuron_cpu_online | |
| 33/158 Test #89: testcorenrn_gf::neuron ............................................. Passed 7.18 sec | |
| Start 90: testcorenrn_gf::coreneuron_gpu_online | |
| 34/158 Test #101: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 26.69 sec | |
| Start 144: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 35/158 Test #65: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 41.37 sec | |
| Start 91: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 36/158 Test #64: external_ringtest::coreneuron_gpu_mpi .............................. Passed 45.84 sec | |
| Start 92: testcorenrn_gf::coreneuron_gpu_offline | |
| 37/158 Test #100: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 47.80 sec | |
| Start 146: channel_benchmark_sscx::neuron | |
| 38/158 Test #90: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 42.94 sec | |
| Start 94: testcorenrn_gf::coreneuron_cpu_online | |
| 39/158 Test #92: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 43.71 sec | |
| Start 95: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 40/158 Test #94: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 31.92 sec | |
| Start 96: testcorenrn_gf::coreneuron_cpu_offline | |
| 41/158 Test #58: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 110.68 sec | |
| Start 99: testcorenrn_patstim::neuron | |
| 42/158 Test #63: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 108.37 sec | |
| Start 103: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 43/158 Test #99: testcorenrn_patstim::neuron ........................................ Passed 4.27 sec | |
| Start 104: testcorenrn_patstim::coreneuron_cpu_offline | |
| 44/158 Test #91: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 70.61 sec | |
| Start 107: testcorenrn_vecplay::neuron | |
| 45/158 Test #107: testcorenrn_vecplay::neuron ........................................ Passed 4.10 sec | |
| Start 108: testcorenrn_vecplay::coreneuron_gpu_online | |
| 46/158 Test #95: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 33.51 sec | |
| Start 109: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 47/158 Test #96: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 23.66 sec | |
| Start 110: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 48/158 Test #104: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 26.64 sec | |
| Start 112: testcorenrn_vecplay::coreneuron_cpu_online | |
| 49/158 Test #112: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 24.16 sec | |
| Start 113: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 50/158 Test #103: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 56.22 sec | |
| Start 114: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 51/158 Test #141: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 149.34 sec | |
| Start 147: channel_benchmark_sscx::coreneuron_gpu_online | |
| 52/158 Test #108: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 55.50 sec | |
| Start 127: testcorenrn_watch::neuron | |
| 53/158 Test #110: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 48.01 sec | |
| Start 128: testcorenrn_watch::coreneuron_gpu_online | |
| 54/158 Test #140: channel_benchmark_hippo::neuron .................................... Passed 154.81 sec | |
| Start 148: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 55/158 Test #127: testcorenrn_watch::neuron .......................................... Passed 3.89 sec | |
| Start 129: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 56/158 Test #114: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 20.06 sec | |
| Start 130: testcorenrn_watch::coreneuron_gpu_offline | |
| 57/158 Test #142: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 164.06 sec | |
| Start 149: channel_benchmark_sscx::coreneuron_cpu_online | |
| 58/158 Test #143: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 165.43 sec | |
| Start 150: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 59/158 Test #113: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 34.32 sec | |
| Start 132: testcorenrn_watch::coreneuron_cpu_online | |
| 60/158 Test #144: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 164.01 sec | |
| Start 1: testneuron | |
| 61/158 Test #1: testneuron ......................................................... Passed 0.18 sec | |
| Start 2: ringtest | |
| 62/158 Test #146: channel_benchmark_sscx::neuron ..................................... Passed 145.25 sec | |
| Start 3: connect_dend | |
| 63/158 Test #3: connect_dend ....................................................... Passed 0.38 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 64/158 Test #2: ringtest ........................................................... Passed 0.63 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 65/158 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.68 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 66/158 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.50 sec | |
| Start 7: mpi_init::python_mpienv | |
| 67/158 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 1.33 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 68/158 Test #109: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 74.02 sec | |
| Start 133: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 69/158 Test #7: mpi_init::python_mpienv ............................................ Passed 2.85 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 70/158 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.93 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 71/158 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.57 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 72/158 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.24 sec | |
| Start 12: pynrn_tests::basic_tests | |
| 73/158 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 3.69 sec | |
| Start 13: parallel_tests | |
| 74/158 Test #12: pynrn_tests::basic_tests ........................................... Passed 7.47 sec | |
| Start 14: parallel_partrans | |
| 75/158 Test #14: parallel_partrans .................................................. Passed 7.63 sec | |
| Start 15: parallel_netpar | |
| 76/158 Test #132: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 22.96 sec | |
| Start 134: testcorenrn_watch::coreneuron_cpu_offline | |
| 77/158 Test #13: parallel_tests ..................................................... Passed 14.23 sec | |
| Start 16: parallel_bas | |
| 78/158 Test #130: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 37.58 sec | |
| Start 137: testcorenrn_netstimdirect::direct_netstimdirect | |
| 79/158 Test #128: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 43.74 sec | |
| Start 138: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 80/158 Test #15: parallel_netpar .................................................... Passed 7.36 sec | |
| Start 17: coreneuron_modtests::fornetcon_py_cpu | |
| 81/158 Test #134: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 17.13 sec | |
| Start 18: coreneuron_modtests::direct_py_cpu | |
| Start 19: coreneuron_modtests::direct_hoc_cpu | |
| 82/158 Test #133: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 40.80 sec | |
| Start 20: coreneuron_modtests::spikes_py_cpu | |
| Start 21: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 83/158 Test #16: parallel_bas ....................................................... Passed 26.57 sec | |
| Start 22: coreneuron_modtests::fast_imem_py_cpu | |
| 84/158 Test #17: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 25.91 sec | |
| Start 23: coreneuron_modtests::datareturn_py_cpu | |
| 85/158 Test #22: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 5.01 sec | |
| Start 24: coreneuron_modtests::test_units_py_cpu | |
| 86/158 Test #137: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 32.21 sec | |
| Start 25: coreneuron_modtests::test_netmove_py_cpu | |
| Start 26: coreneuron_modtests::test_pointer_py_cpu | |
| 87/158 Test #129: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 73.29 sec | |
| Start 27: coreneuron_modtests::test_watchrange_py_cpu | |
| Start 28: coreneuron_modtests::test_psolve_py_cpu | |
| 88/158 Test #138: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 35.19 sec | |
| Start 29: coreneuron_modtests::test_ba_py_cpu | |
| Start 30: coreneuron_modtests::test_natrans_py_cpu | |
| 89/158 Test #19: coreneuron_modtests::direct_hoc_cpu ................................ Passed 25.96 sec | |
| Start 34: coreneuron_modtests::fornetcon_py_gpu | |
| 90/158 Test #18: coreneuron_modtests::direct_py_cpu ................................. Passed 27.82 sec | |
| Start 35: coreneuron_modtests::direct_py_gpu | |
| 91/158 Test #21: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 23.96 sec | |
| Start 36: coreneuron_modtests::direct_hoc_gpu | |
| 92/158 Test #20: coreneuron_modtests::spikes_py_cpu ................................. Passed 25.02 sec | |
| Start 37: coreneuron_modtests::spikes_py_gpu | |
| 93/158 Test #24: coreneuron_modtests::test_units_py_cpu ............................. Passed 30.09 sec | |
| Start 38: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 94/158 Test #23: coreneuron_modtests::datareturn_py_cpu ............................. Passed 31.71 sec | |
| Start 39: coreneuron_modtests::fast_imem_py_gpu | |
| 95/158 Test #39: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 3.49 sec | |
| Start 40: coreneuron_modtests::datareturn_py_gpu | |
| 96/158 Test #28: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 33.65 sec | |
| Start 41: coreneuron_modtests::test_units_py_gpu | |
| 97/158 Test #25: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 35.11 sec | |
| Start 42: coreneuron_modtests::test_netmove_py_gpu | |
| 98/158 Test #27: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 36.23 sec | |
| Start 43: coreneuron_modtests::test_pointer_py_gpu | |
| 99/158 Test #29: coreneuron_modtests::test_ba_py_cpu ................................ Passed 34.43 sec | |
| Start 44: coreneuron_modtests::test_watchrange_py_gpu | |
| 100/158 Test #30: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 34.70 sec | |
| Start 45: coreneuron_modtests::test_psolve_py_gpu | |
| 101/158 Test #34: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 34.97 sec | |
| Start 46: coreneuron_modtests::test_ba_py_gpu | |
| 102/158 Test #36: coreneuron_modtests::direct_hoc_gpu ................................ Passed 31.76 sec | |
| Start 47: coreneuron_modtests::test_natrans_py_gpu | |
| 103/158 Test #35: coreneuron_modtests::direct_py_gpu ................................. Passed 33.47 sec | |
| Start 51: external_nrntest | |
| 104/158 Test #37: coreneuron_modtests::spikes_py_gpu ................................. Passed 30.97 sec | |
| Start 78: testcorenrn_bbcore::compare_results | |
| 105/158 Test #78: testcorenrn_bbcore::compare_results ................................ Passed 0.19 sec | |
| Start 88: testcorenrn_deriv::compare_results | |
| 106/158 Test #88: testcorenrn_deriv::compare_results ................................. Passed 0.17 sec | |
| Start 98: testcorenrn_gf::compare_results | |
| 107/158 Test #98: testcorenrn_gf::compare_results .................................... Passed 0.07 sec | |
| Start 106: testcorenrn_patstim::compare_results | |
| 108/158 Test #147: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 121.02 sec | |
| Start 116: testcorenrn_vecplay::compare_results | |
| 109/158 Test #106: testcorenrn_patstim::compare_results ............................... Passed 0.17 sec | |
| Start 136: testcorenrn_watch::compare_results | |
| 110/158 Test #136: testcorenrn_watch::compare_results ................................. Passed 0.12 sec | |
| Start 139: testcorenrn_netstimdirect::compare_results | |
| 111/158 Test #116: testcorenrn_vecplay::compare_results ............................... Passed 0.26 sec | |
| Start 145: channel_benchmark_hippo::compare_results | |
| 112/158 Test #139: testcorenrn_netstimdirect::compare_results ......................... Passed 0.14 sec | |
| 113/158 Test #38: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 16.49 sec | |
| Start 31: coreneuron_modtests::spikes_mpi_py_cpu | |
| 114/158 Test #145: channel_benchmark_hippo::compare_results ........................... Passed 0.25 sec | |
| 115/158 Test #148: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 118.44 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 116/158 Test #149: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 114.21 sec | |
| 117/158 Test #41: coreneuron_modtests::test_units_py_gpu ............................. Passed 18.34 sec | |
| Start 33: coreneuron_modtests::inputpresyn_py_cpu | |
| 118/158 Test #44: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 16.78 sec | |
| 119/158 Test #45: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 16.54 sec | |
| Start 48: coreneuron_modtests::spikes_mpi_py_gpu | |
| 120/158 Test #42: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 19.54 sec | |
| 121/158 Test #40: coreneuron_modtests::datareturn_py_gpu ............................. Passed 20.95 sec | |
| Start 49: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 122/158 Test #46: coreneuron_modtests::test_ba_py_gpu ................................ Passed 11.26 sec | |
| 123/158 Test #150: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 112.66 sec | |
| Start 50: coreneuron_modtests::inputpresyn_py_gpu | |
| 124/158 Test #47: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 11.42 sec | |
| Start 151: channel_benchmark_sscx::compare_results | |
| 125/158 Test #151: channel_benchmark_sscx::compare_results ............................ Passed 0.08 sec | |
| 126/158 Test #32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 14.95 sec | |
| 127/158 Test #31: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 16.30 sec | |
| Start 121: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 128/158 Test #33: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 9.38 sec | |
| 129/158 Test #49: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 10.89 sec | |
| Start 125: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 130/158 Test #48: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 11.83 sec | |
| 131/158 Test #50: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 10.89 sec | |
| Start 153: olfactory-bulb-3d::neuron::preparation | |
| 132/158 Test #153: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.15 sec | |
| Start 155: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 133/158 Test #121: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 5.00 sec | |
| Start 157: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 134/158 Test #26: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 66.62 sec | |
| 135/158 Test #155: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.55 sec | |
| Start 52: reduced_dentate::neuron | |
| 136/158 Test #157: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.51 sec | |
| Start 53: reduced_dentate::coreneuron_cpu | |
| 137/158 Test #43: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 30.73 sec | |
| 138/158 Test #125: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.20 sec | |
| Start 54: reduced_dentate::coreneuron_gpu | |
| 139/158 Test #52: reduced_dentate::neuron ............................................ Passed 18.80 sec | |
| Start 62: external_ringtest::coreneuron_cpu_mpi_threads | |
| 140/158 Test #62: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 11.84 sec | |
| Start 67: external_ringtest::coreneuron_gpu_mpi_threads | |
| 141/158 Test #53: reduced_dentate::coreneuron_cpu .................................... Passed 40.20 sec | |
| Start 117: testcorenrn_vecevent::neuron | |
| 142/158 Test #54: reduced_dentate::coreneuron_gpu .................................... Passed 38.55 sec | |
| Start 118: testcorenrn_vecevent::coreneuron_gpu_online | |
| Start 55: reduced_dentate::compare_results | |
| 143/158 Test #55: reduced_dentate::compare_results ................................... Passed 0.17 sec | |
| 144/158 Test #67: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 13.36 sec | |
| Start 119: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| Start 68: external_ringtest::compare_results | |
| 145/158 Test #68: external_ringtest::compare_results ................................. Passed 0.08 sec | |
| 146/158 Test #117: testcorenrn_vecevent::neuron ....................................... Passed 4.00 sec | |
| Start 120: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 147/158 Test #118: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 5.72 sec | |
| Start 122: testcorenrn_vecevent::coreneuron_cpu_online | |
| 148/158 Test #120: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 5.47 sec | |
| Start 123: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 149/158 Test #122: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 12.94 sec | |
| Start 124: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 150/158 Test #119: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 23.56 sec | |
| Start 152: olfactory-bulb-3d::neuron | |
| 151/158 Test #123: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 18.28 sec | |
| Start 154: olfactory-bulb-3d::coreneuron_gpu_online | |
| 152/158 Test #124: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 9.29 sec | |
| Start 156: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 126: testcorenrn_vecevent::compare_results | |
| 153/158 Test #126: testcorenrn_vecevent::compare_results .............................. Passed 0.41 sec | |
| 154/158 Test #51: external_nrntest ................................................... Passed 112.55 sec | |
| 155/158 Test #152: olfactory-bulb-3d::neuron .......................................... Passed 159.24 sec | |
| 156/158 Test #154: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 166.67 sec | |
| 157/158 Test #156: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 167.13 sec | |
| Start 158: olfactory-bulb-3d::compare_results | |
| 158/158 Test #158: olfactory-bulb-3d::compare_results ................................. Passed 0.25 sec | |
| 100% tests passed, 0 tests failed out of 158 | |
| Total Test time (real) = 573.87 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646829624:step_script [0Ksection_start:1646829624:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=257582 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179981 responseStatus[0;m=201 Created token[0;m=jHU41PXL | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=257637 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179981 responseStatus[0;m=201 Created token[0;m=jHU41PXL | |
| section_end:1646829625:upload_artifacts_on_success [0Ksection_start:1646829625:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646829626:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1646828310:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1646828310:resolve_secrets [0Ksection_start:1646828310:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor951721588, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 42032, build ref 99c0b2078cc58bb7542d720a7ef0ec0c1eeabe28, job ID 179980 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032, optional exclusive flag , optional cpus per task flag --cpus-per-task=1 | |
| A slurm job will be created with name GL_J179980_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 319708 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J179980_PROD_P112_CP0_C0 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P42032 --ntasks=16 --jobid=319708 --cpus-per-task=1 --mem=76G | |
| section_end:1646828378:prepare_executor [0Ksection_start:1646828378:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i3n0 via bbpv1.epfl.ch... | |
| section_end:1646828381:prepare_script [0Ksection_start:1646828381:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1646828382:get_sources [0Ksection_start:1646828382:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:omp (179969)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=234095 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=179969 responseStatus[0;m=200 OK token[0;m=NtFoy6Ji | |
| section_end:1646828384:download_artifacts [0Ksection_start:1646828384:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n31 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220309-1220 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P42032/J179969/spack-build/spack-stage-neuron-develop-ik54mlr5japlprt37kesnyjymcdgaqgh/spack-build-ik54mlr | |
| Start 61: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 66: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 73: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 77: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 83: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 87: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 93: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 97: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 102: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| Start 105: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 56: external_ringtest::neuron | |
| 1/158 Test #73: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.42 sec | |
| Start 69: testcorenrn_bbcore::neuron | |
| 2/158 Test #83: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 3.60 sec | |
| Start 70: testcorenrn_bbcore::coreneuron_gpu_online | |
| 3/158 Test #56: external_ringtest::neuron .......................................... Passed 3.85 sec | |
| Start 71: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 4/158 Test #87: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 4.85 sec | |
| Start 72: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 5/158 Test #77: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 6.74 sec | |
| Start 74: testcorenrn_bbcore::coreneuron_cpu_online | |
| 6/158 Test #102: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 8.09 sec | |
| Start 75: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 7/158 Test #97: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 8.25 sec | |
| Start 111: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 8/158 Test #69: testcorenrn_bbcore::neuron ......................................... Passed 6.12 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 9/158 Test #93: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 9.09 sec | |
| Start 115: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 10/158 Test #105: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 9.11 sec | |
| Start 131: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 11/158 Test #111: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 3.29 sec | |
| Start 135: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 12/158 Test #131: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 2.79 sec | |
| Start 57: external_ringtest::neuron_mpi | |
| 13/158 Test #115: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.87 sec | |
| Start 58: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 14/158 Test #135: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.13 sec | |
| Start 59: external_ringtest::coreneuron_cpu_mpi | |
| 15/158 Test #57: external_ringtest::neuron_mpi ...................................... Passed 3.49 sec | |
| Start 63: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 16/158 Test #72: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 26.95 sec | |
| Start 79: testcorenrn_deriv::neuron | |
| 17/158 Test #66: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 32.18 sec | |
| Start 64: external_ringtest::coreneuron_gpu_mpi | |
| 18/158 Test #79: testcorenrn_deriv::neuron .......................................... Passed 1.54 sec | |
| Start 80: testcorenrn_deriv::coreneuron_gpu_online | |
| 19/158 Test #61: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 37.22 sec | |
| Start 60: external_ringtest::coreneuron_cpu_mpi_offline | |
| 20/158 Test #70: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 34.86 sec | |
| Start 81: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 21/158 Test #76: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 33.65 sec | |
| Start 82: testcorenrn_deriv::coreneuron_gpu_offline | |
| 22/158 Test #74: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 35.49 sec | |
| Start 84: testcorenrn_deriv::coreneuron_cpu_online | |
| 23/158 Test #75: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 34.20 sec | |
| Start 85: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 24/158 Test #59: external_ringtest::coreneuron_cpu_mpi .............................. Passed 31.45 sec | |
| Start 65: external_ringtest::coreneuron_gpu_mpi_offline | |
| 25/158 Test #71: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 41.53 sec | |
| Start 86: testcorenrn_deriv::coreneuron_cpu_offline | |
| 26/158 Test #80: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 19.29 sec | |
| Start 100: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 27/158 Test #60: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 17.35 sec | |
| Start 89: testcorenrn_gf::neuron | |
| 28/158 Test #82: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 13.01 sec | |
| Start 101: testcorenrn_patstim::coreneuron_gpu_offline | |
| 29/158 Test #64: external_ringtest::coreneuron_gpu_mpi .............................. Passed 23.24 sec | |
| Start 90: testcorenrn_gf::coreneuron_gpu_online | |
| 30/158 Test #84: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 14.91 sec | |
| Start 140: channel_benchmark_hippo::neuron | |
| 31/158 Test #85: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 15.45 sec | |
| Start 141: channel_benchmark_hippo::coreneuron_gpu_online | |
| 32/158 Test #89: testcorenrn_gf::neuron ............................................. Passed 3.60 sec | |
| Start 91: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 33/158 Test #86: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 15.89 sec | |
| Start 142: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 34/158 Test #81: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 23.49 sec | |
| Start 143: channel_benchmark_hippo::coreneuron_cpu_online | |
| 35/158 Test #65: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 31.42 sec | |
| Start 92: testcorenrn_gf::coreneuron_gpu_offline | |
| 36/158 Test #101: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 33.19 sec | |
| Start 144: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 37/158 Test #100: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 51.26 sec | |
| Start 146: channel_benchmark_sscx::neuron | |
| 38/158 Test #90: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 51.55 sec | |
| Start 94: testcorenrn_gf::coreneuron_cpu_online | |
| 39/158 Test #92: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 35.88 sec | |
| Start 95: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 40/158 Test #63: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 105.05 sec | |
| Start 96: testcorenrn_gf::coreneuron_cpu_offline | |
| 41/158 Test #58: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 109.37 sec | |
| Start 99: testcorenrn_patstim::neuron | |
| 42/158 Test #99: testcorenrn_patstim::neuron ........................................ Passed 4.62 sec | |
| Start 103: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 43/158 Test #94: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 28.74 sec | |
| Start 104: testcorenrn_patstim::coreneuron_cpu_offline | |
| 44/158 Test #91: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 79.31 sec | |
| Start 107: testcorenrn_vecplay::neuron | |
| 45/158 Test #107: testcorenrn_vecplay::neuron ........................................ Passed 4.47 sec | |
| Start 108: testcorenrn_vecplay::coreneuron_gpu_online | |
| 46/158 Test #96: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 26.78 sec | |
| Start 109: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 47/158 Test #104: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 22.99 sec | |
| Start 110: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 48/158 Test #95: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 46.40 sec | |
| Start 112: testcorenrn_vecplay::coreneuron_cpu_online | |
| 49/158 Test #103: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 59.35 sec | |
| Start 113: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 50/158 Test #112: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 27.87 sec | |
| Start 114: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 51/158 Test #108: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 58.14 sec | |
| Start 127: testcorenrn_watch::neuron | |
| 52/158 Test #141: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 142.46 sec | |
| Start 147: channel_benchmark_sscx::coreneuron_gpu_online | |
| 53/158 Test #127: testcorenrn_watch::neuron .......................................... Passed 4.03 sec | |
| Start 128: testcorenrn_watch::coreneuron_gpu_online | |
| 54/158 Test #114: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 20.60 sec | |
| Start 129: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 55/158 Test #140: channel_benchmark_hippo::neuron .................................... Passed 150.77 sec | |
| Start 148: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 56/158 Test #110: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 50.55 sec | |
| Start 130: testcorenrn_watch::coreneuron_gpu_offline | |
| 57/158 Test #142: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 156.86 sec | |
| Start 149: channel_benchmark_sscx::coreneuron_cpu_online | |
| 58/158 Test #113: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 34.91 sec | |
| Start 132: testcorenrn_watch::coreneuron_cpu_online | |
| 59/158 Test #143: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 168.76 sec | |
| Start 150: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 60/158 Test #130: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 33.30 sec | |
| Start 133: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 61/158 Test #132: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 22.81 sec | |
| Start 134: testcorenrn_watch::coreneuron_cpu_offline | |
| 62/158 Test #109: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 100.78 sec | |
| Start 137: testcorenrn_netstimdirect::direct_netstimdirect | |
| 63/158 Test #144: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 163.57 sec | |
| Start 1: testneuron | |
| 64/158 Test #1: testneuron ......................................................... Passed 0.07 sec | |
| Start 2: ringtest | |
| 65/158 Test #2: ringtest ........................................................... Passed 0.27 sec | |
| Start 3: connect_dend | |
| 66/158 Test #3: connect_dend ....................................................... Passed 0.18 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 67/158 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.66 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 68/158 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.33 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 69/158 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.99 sec | |
| Start 7: mpi_init::python_mpienv | |
| 70/158 Test #7: mpi_init::python_mpienv ............................................ Passed 2.69 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 71/158 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.88 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 72/158 Test #146: channel_benchmark_sscx::neuron ..................................... Passed 156.07 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 73/158 Test #134: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 17.66 sec | |
| Start 138: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 74/158 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.69 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 75/158 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.18 sec | |
| Start 12: pynrn_tests::basic_tests | |
| 76/158 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 3.32 sec | |
| Start 13: parallel_tests | |
| 77/158 Test #12: pynrn_tests::basic_tests ........................................... Passed 6.67 sec | |
| Start 14: parallel_partrans | |
| 78/158 Test #137: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 26.51 sec | |
| Start 15: parallel_netpar | |
| Start 16: parallel_bas | |
| 79/158 Test #14: parallel_partrans .................................................. Passed 10.29 sec | |
| Start 17: coreneuron_modtests::fornetcon_py_cpu | |
| 80/158 Test #13: parallel_tests ..................................................... Passed 16.91 sec | |
| Start 18: coreneuron_modtests::direct_py_cpu | |
| 81/158 Test #15: parallel_netpar .................................................... Passed 8.46 sec | |
| Start 19: coreneuron_modtests::direct_hoc_cpu | |
| 82/158 Test #17: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 8.81 sec | |
| Start 20: coreneuron_modtests::spikes_py_cpu | |
| 83/158 Test #18: coreneuron_modtests::direct_py_cpu ................................. Passed 14.13 sec | |
| Start 21: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 84/158 Test #19: coreneuron_modtests::direct_hoc_cpu ................................ Passed 12.66 sec | |
| Start 22: coreneuron_modtests::fast_imem_py_cpu | |
| 85/158 Test #128: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 91.65 sec | |
| Start 23: coreneuron_modtests::datareturn_py_cpu | |
| Start 24: coreneuron_modtests::test_units_py_cpu | |
| 86/158 Test #133: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 58.37 sec | |
| Start 25: coreneuron_modtests::test_netmove_py_cpu | |
| Start 26: coreneuron_modtests::test_pointer_py_cpu | |
| 87/158 Test #138: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 40.97 sec | |
| Start 27: coreneuron_modtests::test_watchrange_py_cpu | |
| Start 28: coreneuron_modtests::test_psolve_py_cpu | |
| 88/158 Test #16: parallel_bas ....................................................... Passed 31.96 sec | |
| Start 29: coreneuron_modtests::test_ba_py_cpu | |
| 89/158 Test #20: coreneuron_modtests::spikes_py_cpu ................................. Passed 19.07 sec | |
| Start 30: coreneuron_modtests::test_natrans_py_cpu | |
| 90/158 Test #22: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 15.91 sec | |
| Start 34: coreneuron_modtests::fornetcon_py_gpu | |
| 91/158 Test #129: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 110.00 sec | |
| Start 31: coreneuron_modtests::spikes_mpi_py_cpu | |
| 92/158 Test #21: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 28.10 sec | |
| Start 35: coreneuron_modtests::direct_py_gpu | |
| 93/158 Test #24: coreneuron_modtests::test_units_py_cpu ............................. Passed 27.47 sec | |
| Start 36: coreneuron_modtests::direct_hoc_gpu | |
| 94/158 Test #31: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 10.83 sec | |
| Start 32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 95/158 Test #27: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 31.20 sec | |
| Start 37: coreneuron_modtests::spikes_py_gpu | |
| 96/158 Test #23: coreneuron_modtests::datareturn_py_cpu ............................. Passed 37.83 sec | |
| Start 38: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 97/158 Test #28: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 33.49 sec | |
| Start 39: coreneuron_modtests::fast_imem_py_gpu | |
| 98/158 Test #29: coreneuron_modtests::test_ba_py_cpu ................................ Passed 29.35 sec | |
| Start 40: coreneuron_modtests::datareturn_py_gpu | |
| 99/158 Test #30: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 29.72 sec | |
| Start 41: coreneuron_modtests::test_units_py_gpu | |
| 100/158 Test #32: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 9.71 sec | |
| Start 33: coreneuron_modtests::inputpresyn_py_cpu | |
| 101/158 Test #25: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 37.21 sec | |
| Start 42: coreneuron_modtests::test_netmove_py_gpu | |
| 102/158 Test #34: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 26.95 sec | |
| Start 43: coreneuron_modtests::test_pointer_py_gpu | |
| 103/158 Test #39: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 3.52 sec | |
| Start 44: coreneuron_modtests::test_watchrange_py_gpu | |
| 104/158 Test #147: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 138.80 sec | |
| Start 45: coreneuron_modtests::test_psolve_py_gpu | |
| 105/158 Test #148: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 131.30 sec | |
| Start 46: coreneuron_modtests::test_ba_py_gpu | |
| 106/158 Test #149: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 123.75 sec | |
| Start 47: coreneuron_modtests::test_natrans_py_gpu | |
| 107/158 Test #41: coreneuron_modtests::test_units_py_gpu ............................. Passed 9.69 sec | |
| Start 51: external_nrntest | |
| 108/158 Test #36: coreneuron_modtests::direct_hoc_gpu ................................ Passed 25.22 sec | |
| Start 78: testcorenrn_bbcore::compare_results | |
| 109/158 Test #78: testcorenrn_bbcore::compare_results ................................ Passed 0.42 sec | |
| Start 88: testcorenrn_deriv::compare_results | |
| 110/158 Test #38: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 15.47 sec | |
| Start 98: testcorenrn_gf::compare_results | |
| 111/158 Test #44: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 10.45 sec | |
| Start 106: testcorenrn_patstim::compare_results | |
| 112/158 Test #98: testcorenrn_gf::compare_results .................................... Passed 0.07 sec | |
| Start 116: testcorenrn_vecplay::compare_results | |
| 113/158 Test #46: coreneuron_modtests::test_ba_py_gpu ................................ Passed 9.97 sec | |
| Start 136: testcorenrn_watch::compare_results | |
| 114/158 Test #88: testcorenrn_deriv::compare_results ................................. Passed 0.51 sec | |
| Start 139: testcorenrn_netstimdirect::compare_results | |
| 115/158 Test #139: testcorenrn_netstimdirect::compare_results ......................... Passed 0.27 sec | |
| Start 145: channel_benchmark_hippo::compare_results | |
| 116/158 Test #116: testcorenrn_vecplay::compare_results ............................... Passed 0.58 sec | |
| 117/158 Test #136: testcorenrn_watch::compare_results ................................. Passed 0.56 sec | |
| Start 48: coreneuron_modtests::spikes_mpi_py_gpu | |
| 118/158 Test #45: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 10.74 sec | |
| 119/158 Test #33: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 12.09 sec | |
| Start 49: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 120/158 Test #106: testcorenrn_patstim::compare_results ............................... Passed 0.89 sec | |
| Start 50: coreneuron_modtests::inputpresyn_py_gpu | |
| 121/158 Test #150: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 119.58 sec | |
| Start 151: channel_benchmark_sscx::compare_results | |
| 122/158 Test #145: channel_benchmark_hippo::compare_results ........................... Passed 0.89 sec | |
| 123/158 Test #35: coreneuron_modtests::direct_py_gpu ................................. Passed 27.61 sec | |
| 124/158 Test #47: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 9.48 sec | |
| 125/158 Test #151: channel_benchmark_sscx::compare_results ............................ Passed 1.10 sec | |
| Start 121: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 126/158 Test #37: coreneuron_modtests::spikes_py_gpu ................................. Passed 18.64 sec | |
| 127/158 Test #40: coreneuron_modtests::datareturn_py_gpu ............................. Passed 17.95 sec | |
| 128/158 Test #42: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 15.75 sec | |
| 129/158 Test #26: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 58.22 sec | |
| Start 125: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 130/158 Test #48: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 9.83 sec | |
| 131/158 Test #121: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 8.56 sec | |
| Start 153: olfactory-bulb-3d::neuron::preparation | |
| 132/158 Test #153: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.14 sec | |
| Start 155: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 133/158 Test #155: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.13 sec | |
| Start 157: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 134/158 Test #157: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.05 sec | |
| Start 52: reduced_dentate::neuron | |
| 135/158 Test #50: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 11.59 sec | |
| Start 53: reduced_dentate::coreneuron_cpu | |
| 136/158 Test #49: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 11.88 sec | |
| 137/158 Test #125: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.71 sec | |
| Start 54: reduced_dentate::coreneuron_gpu | |
| 138/158 Test #43: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 23.94 sec | |
| 139/158 Test #52: reduced_dentate::neuron ............................................ Passed 39.21 sec | |
| Start 62: external_ringtest::coreneuron_cpu_mpi_threads | |
| 140/158 Test #53: reduced_dentate::coreneuron_cpu .................................... Passed 43.27 sec | |
| Start 117: testcorenrn_vecevent::neuron | |
| 141/158 Test #117: testcorenrn_vecevent::neuron ....................................... Passed 4.08 sec | |
| Start 118: testcorenrn_vecevent::coreneuron_gpu_online | |
| 142/158 Test #62: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 15.23 sec | |
| Start 67: external_ringtest::coreneuron_gpu_mpi_threads | |
| 143/158 Test #54: reduced_dentate::coreneuron_gpu .................................... Passed 54.49 sec | |
| Start 119: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| Start 55: reduced_dentate::compare_results | |
| 144/158 Test #55: reduced_dentate::compare_results ................................... Passed 0.07 sec | |
| 145/158 Test #118: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 9.01 sec | |
| Start 120: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 146/158 Test #120: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 16.76 sec | |
| Start 122: testcorenrn_vecevent::coreneuron_cpu_online | |
| 147/158 Test #67: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 21.47 sec | |
| Start 123: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| Start 68: external_ringtest::compare_results | |
| 148/158 Test #68: external_ringtest::compare_results ................................. Passed 0.09 sec | |
| 149/158 Test #119: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 20.23 sec | |
| Start 124: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 150/158 Test #122: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 3.12 sec | |
| Start 152: olfactory-bulb-3d::neuron | |
| 151/158 Test #124: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 4.26 sec | |
| Start 154: olfactory-bulb-3d::coreneuron_gpu_online | |
| 152/158 Test #123: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 41.98 sec | |
| Start 156: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 126: testcorenrn_vecevent::compare_results | |
| 153/158 Test #126: testcorenrn_vecevent::compare_results .............................. Passed 0.08 sec | |
| 154/158 Test #51: external_nrntest ................................................... Passed 348.74 sec | |
| 155/158 Test #152: olfactory-bulb-3d::neuron .......................................... Passed 259.43 sec | |
| 156/158 Test #154: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 274.64 sec | |
| 157/158 Test #156: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 237.30 sec | |
| Start 158: olfactory-bulb-3d::compare_results | |
| 158/158 Test #158: olfactory-bulb-3d::compare_results ................................. Passed 0.25 sec | |
| 100% tests passed, 0 tests failed out of 158 | |
| Total Test time (real) = 715.87 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1646829133:step_script [0Ksection_start:1646829133:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249782 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=179980 responseStatus[0;m=201 Created token[0;m=1RDK_4Mj | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249835 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=179980 responseStatus[0;m=201 Created token[0;m=1RDK_4Mj | |
| section_end:1646829135:upload_artifacts_on_success [0Ksection_start:1646829135:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1646829136:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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