bbpbuildbot/GitLab logs for bluebrain-coreneuron#713 Secret

## build-coreneuron-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640245668:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640245668:resolve_secrets
[0Ksection_start:1640245668:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor824270172, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114618
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114618, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114618_PROD_P112_CP3_C3
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144403
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114618_PROD_P112_CP3_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114618 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114618 --ntasks=1 --jobid=144403 --cpus-per-task=6 --mem=30750M
section_end:1640245671:prepare_executor
[0Ksection_start:1640245671:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640245674:prepare_script
[0Ksection_start:1640245674:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640245675:get_sources
[0Ksection_start:1640245675:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for coreneuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=28308 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640245685:restore_cache
[0Ksection_start:1640245685:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for spack_setup (114611)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=29655 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114611 responseStatus[0;m=200 OK token[0;m=Tcfpasef
section_end:1640245686:download_artifacts
[0Ksection_start:1640245686:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114618/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114618/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114618/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114618/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114618/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for coreneuron is commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py
index d2ab4ef..8cef2b5 100644
--- a/var/spack/repos/builtin/packages/coreneuron/package.py
+++ b/var/spack/repos/builtin/packages/coreneuron/package.py
@@ -18,7 +18,7 @@ class Coreneuron(CMakePackage):
     url      = "https://github.com/BlueBrain/CoreNeuron"
     git      = "https://github.com/BlueBrain/CoreNeuron"

-    version('develop', branch='master')
+    version('develop', commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44")
     # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned
     version('1.0.0.20211020', commit='e265f9d')
     version('1.0.0.20211012', commit='846b3a6')
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron@develop%nvhpc+gpu+openmp+tests~legacy-unit~report build_type=RelWithDebInfo
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be d4mbc44tzlxvfyp7iy3jomhrptr7oxvo
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114618/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114618/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 08:48:41 2021
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.39 / 0.51 (76.21 %)
  Files:            9572
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'd4mbc44tzlxvfyp7iy3jomhrptr7oxvo'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron@develop%nvhpc+gpu~legacy-unit+openmp~report+tests build_type=RelWithDebInfo

Concretized
--------------------------------
 -   d4mbc44  coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
 -   ilh3i6h      ^bison@3.6.4%nvhpc@21.11 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64
[^]  ugnnauj      ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
 -   3id4xmv      ^cmake@3.15.7%nvhpc@21.11~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[^]  rtdgzju      ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
 -   o7642tm      ^flex@2.6.4%nvhpc@21.11+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  rvmqyas      ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
 -   6yf3e2o      ^ninja@1.10.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  boepiq7      ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ilh3i6hsazuqblyjs46wno4wkyhcaycx)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-ugnnaujozxx7u35zmkozzxs42p6ujetq)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-3id4xmvyepn3luv5kvzabnojgl4kjbvv)
==> cuda@11.5.1 : has external module in ['cuda/11.5.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.5.1-gygt6u (external cuda-11.5.1-rtdgzjuarsbhlad5e2q6z6hb35poq3ba)
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-o7642tm7j36qtzmyzthrmdbfctyfsdnn)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-rvmqyashdppnfjw5xoegvqeeaassuana)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-6yf3e2oymeefngifdautp2wd347lcijn)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-boepiq7qwlm3d6e5almdw67q65o5quqn)
==> Installing coreneuron-develop-d4mbc44tzlxvfyp7iy3jomhrptr7oxvo
==> No binary for coreneuron-develop-d4mbc44tzlxvfyp7iy3jomhrptr7oxvo found: installing from source
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/coreneuron-develop-d4mbc4
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:    /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114618/_/ccache
  Primary config:     /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114618/_/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:      Thu Dec 23 08:50:24 2021
  Hits:                116 /  118 (98.31 %)
    Direct:            100 /  118 (84.75 %)
    Preprocessed:       16 /   18 (88.89 %)
  Misses:                2
    Direct:             18
    Preprocessed:        2
  Uncacheable:          19
Primary storage:
  Hits:                231 /  236 (97.88 %)
  Misses:                5
  Cache size (GB):    0.39 / 0.51 (76.22 %)
  Files:              9576
Uncacheable:
  Called for linking:   16
  No input file:         3
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640245824:step_script
[0Ksection_start:1640245824:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache coreneuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=35995 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 10137 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-6[0;m
[32;1mCreated cache[0;m
section_end:1640245847:archive_cache
[0Ksection_start:1640245847:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=37894 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114618 responseStatus[0;m=201 Created token[0;m=QZYD5PL_
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=37921 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114618 responseStatus[0;m=201 Created token[0;m=QZYD5PL_
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=37953 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114618 responseStatus[0;m=201 Created token[0;m=QZYD5PL_
section_end:1640245848:upload_artifacts_on_success
[0Ksection_start:1640245848:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640245849:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-coreneuron-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640245667:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640245667:resolve_secrets
[0Ksection_start:1640245667:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor073043687, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114615
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114615, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114615_PROD_P112_CP2_C2
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144402
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114615_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114615 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114615 --ntasks=1 --jobid=144402 --cpus-per-task=6 --mem=30750M
section_end:1640245670:prepare_executor
[0Ksection_start:1640245670:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640245674:prepare_script
[0Ksection_start:1640245674:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640245674:get_sources
[0Ksection_start:1640245674:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for coreneuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=28274 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640245684:restore_cache
[0Ksection_start:1640245684:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for spack_setup (114611)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=29338 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114611 responseStatus[0;m=200 OK token[0;m=Tcfpasef
section_end:1640245685:download_artifacts
[0Ksection_start:1640245685:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114615/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114615/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114615/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114615/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114615/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for coreneuron is commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py
index d2ab4ef..8cef2b5 100644
--- a/var/spack/repos/builtin/packages/coreneuron/package.py
+++ b/var/spack/repos/builtin/packages/coreneuron/package.py
@@ -18,7 +18,7 @@ class Coreneuron(CMakePackage):
     url      = "https://github.com/BlueBrain/CoreNeuron"
     git      = "https://github.com/BlueBrain/CoreNeuron"

-    version('develop', branch='master')
+    version('develop', commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44")
     # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned
     version('1.0.0.20211020', commit='e265f9d')
     version('1.0.0.20211012', commit='846b3a6')
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron@develop%intel+tests~legacy-unit build_type=Debug
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be aevgkbdozl3htdtjhrd5w65n3c6mb2jh
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114615/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114615/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 08:48:42 2021
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.36 / 0.51 (70.18 %)
  Files:            7496
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'aevgkbdozl3htdtjhrd5w65n3c6mb2jh'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron@develop%intel~legacy-unit+tests build_type=Debug

Concretized
--------------------------------
 -   aevgkbd  coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64
 -   ymcya3l      ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  pvpzjkl      ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64
 -   mxqypex      ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
 -   5mabxtb      ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  nnhu6zi      ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  2gn7wjx      ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  pjaxv63          ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64
[^]  wjshhip              ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64
[^]  gwht6mm          ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64
 -   nayogh4      ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  icfhbit      ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  7eg3tqe      ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg)
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj
==> Installing coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh
==> No binary for coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh found: installing from source
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-aevgkb
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114615/_/ccache
  Primary config:              /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114615/_/ccache/ccache.conf
  Secondary config:            /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:               Thu Dec 23 08:50:10 2021
  Hits:                         109 /  117 (93.16 %)
    Direct:                      93 /  118 (78.81 %)
    Preprocessed:                16 /   25 (64.00 %)
  Misses:                         8
    Direct:                      25
    Preprocessed:                 9
  Uncacheable:                   20
Primary storage:
  Hits:                         217 /  236 (91.95 %)
  Misses:                        19
  Cache size (GB):             0.36 / 0.51 (70.20 %)
  Files:                       7512
Uncacheable:
  Called for linking:            16
  Compiler produced no output:    1
  No input file:                  3
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640245811:step_script
[0Ksection_start:1640245811:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache coreneuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=35026 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 8073 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-6[0;m
[32;1mCreated cache[0;m
section_end:1640245830:archive_cache
[0Ksection_start:1640245830:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=36181 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114615 responseStatus[0;m=201 Created token[0;m=q9XiFzx6
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=36205 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114615 responseStatus[0;m=201 Created token[0;m=q9XiFzx6
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=36231 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114615 responseStatus[0;m=201 Created token[0;m=q9XiFzx6
section_end:1640245831:upload_artifacts_on_success
[0Ksection_start:1640245831:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640245832:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-coreneuron-nmodl-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640246620:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640246620:resolve_secrets
[0Ksection_start:1640246620:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor408484752, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114616
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114616, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114616_PROD_P112_CP1_C1
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144482
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114616_PROD_P112_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114616 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114616 --ntasks=1 --jobid=144482 --cpus-per-task=6 --mem=30750M
section_end:1640246622:prepare_executor
[0Ksection_start:1640246622:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640246624:prepare_script
[0Ksection_start:1640246624:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640246624:get_sources
[0Ksection_start:1640246624:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for coreneuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=53558 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640246660:restore_cache
[0Ksection_start:1640246660:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:nmodl:gpu (114613)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=54772 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114613 responseStatus[0;m=200 OK token[0;m=rgz71GtS
section_end:1640246661:download_artifacts
[0Ksection_start:1640246661:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114616/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114616/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114616/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114616/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114616/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for coreneuron is commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py
index d2ab4ef..8cef2b5 100644
--- a/var/spack/repos/builtin/packages/coreneuron/package.py
+++ b/var/spack/repos/builtin/packages/coreneuron/package.py
@@ -18,7 +18,7 @@ class Coreneuron(CMakePackage):
     url      = "https://github.com/BlueBrain/CoreNeuron"
     git      = "https://github.com/BlueBrain/CoreNeuron"

-    version('develop', branch='master')
+    version('develop', commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44")
     # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned
     version('1.0.0.20211020', commit='e265f9d')
     version('1.0.0.20211012', commit='846b3a6')
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron@develop%nvhpc+nmodl+openmp+gpu+tests~legacy-unit~report~sympy build_type=RelWithDebInfo ^/zfakioujxsm45dlnonboqvphrxexao57
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for nmodl@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be fzwojn4n4gs3mly2gllogfiwmaydujfg
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114616/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114616/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 09:06:46 2021
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.39 / 0.51 (76.22 %)
  Files:            9576
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'fzwojn4n4gs3mly2gllogfiwmaydujfg'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron@develop%nvhpc+gpu~legacy-unit+nmodl+openmp~report~sympy+tests build_type=RelWithDebInfo
[+]      ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]          ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]              ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                  ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]                      ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]                  ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]              ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]          ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]          ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]              ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]          ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]              ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64

Concretized
--------------------------------
 -   fzwojn4  coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
 -   ilh3i6h      ^bison@3.6.4%nvhpc@21.11 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64
[^]  ugnnauj      ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
 -   3id4xmv      ^cmake@3.15.7%nvhpc@21.11~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[^]  rtdgzju      ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
 -   o7642tm      ^flex@2.6.4%nvhpc@21.11+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  rvmqyas      ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
 -   6yf3e2o      ^ninja@1.10.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  zfakiou      ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]  56d4qrp          ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  wmslpld              ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  oy6pnkw                  ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  boepiq7                      ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  qtsnebc                  ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  7ap4eon              ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  nklcaqd          ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  hv3l6m3              ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  ric2ffi              ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  tnxvjns              ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  nqd6d4a                  ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  dt3gjsu                  ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rlm5oq3              ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  auxibxx              ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  a5khbku              ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  4tb344r          ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]  ggibzjm              ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  qqqe57g          ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  7efatr5              ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ilh3i6hsazuqblyjs46wno4wkyhcaycx)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-ugnnaujozxx7u35zmkozzxs42p6ujetq)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-3id4xmvyepn3luv5kvzabnojgl4kjbvv)
==> cuda@11.5.1 : has external module in ['cuda/11.5.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.5.1-gygt6u (external cuda-11.5.1-rtdgzjuarsbhlad5e2q6z6hb35poq3ba)
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-o7642tm7j36qtzmyzthrmdbfctyfsdnn)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-rvmqyashdppnfjw5xoegvqeeaassuana)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-6yf3e2oymeefngifdautp2wd347lcijn)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-boepiq7qwlm3d6e5almdw67q65o5quqn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-attrs-20.3.0-hv3l6m
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-7efatr
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-7ap4eo
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-py-1.8.0-auxibx
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-six-1.16.0-dt3gjs
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-more-itertools-8.7.0-ric2ff
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-setuptools-50.3.2-qtsneb
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pyparsing-2.4.2-nqd6d4
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pluggy-0.13.0-rlm5oq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-oy6pnk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-wcwidth-0.1.7-a5khbk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-4tb344
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-qqqe57
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-packaging-19.2-tnxvjn
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-wmslpl
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-5.3.4-nklcaq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-56d4qr
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/nmodl-develop-zfakio
==> Installing coreneuron-develop-fzwojn4n4gs3mly2gllogfiwmaydujfg
==> No binary for coreneuron-develop-fzwojn4n4gs3mly2gllogfiwmaydujfg found: installing from source
==> Warning: Missing a source id for nmodl@develop
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/coreneuron-develop-fzwojn
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:    /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114616/_/ccache
  Primary config:     /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114616/_/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:      Thu Dec 23 09:26:08 2021
  Hits:                 84 /   96 (87.50 %)
    Direct:              1 /   96 (1.04 %)
    Preprocessed:       83 /   95 (87.37 %)
  Misses:               12
    Direct:             95
    Preprocessed:       12
  Uncacheable:          16
Primary storage:
  Hits:                 85 /  192 (44.27 %)
  Misses:              107
  Cache size (GB):    0.39 / 0.51 (76.70 %)
  Files:              9683
Uncacheable:
  Called for linking:   13
  No input file:         3
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640247969:step_script
[0Ksection_start:1640247969:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache coreneuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=107800 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 10244 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-6[0;m
[32;1mCreated cache[0;m
section_end:1640247991:archive_cache
[0Ksection_start:1640247991:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108454 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114616 responseStatus[0;m=201 Created token[0;m=yeFZenfr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108486 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114616 responseStatus[0;m=201 Created token[0;m=yeFZenfr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108517 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114616 responseStatus[0;m=201 Created token[0;m=yeFZenfr
section_end:1640247992:upload_artifacts_on_success
[0Ksection_start:1640247992:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640247993:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-coreneuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640246596:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640246596:resolve_secrets
[0Ksection_start:1640246596:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor119099175, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114614
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114614, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114614_PROD_P112_CP0_C0
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144481
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114614_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114614 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114614 --ntasks=1 --jobid=144481 --cpus-per-task=6 --mem=30750M
section_end:1640246598:prepare_executor
[0Ksection_start:1640246598:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640246600:prepare_script
[0Ksection_start:1640246600:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640246600:get_sources
[0Ksection_start:1640246600:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for coreneuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=52745 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640246629:restore_cache
[0Ksection_start:1640246629:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:nmodl:intel (114612)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=53981 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114612 responseStatus[0;m=200 OK token[0;m=sgxrjy2b
section_end:1640246630:download_artifacts
[0Ksection_start:1640246630:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114614/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114614/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114614/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114614/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114614/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for coreneuron is commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py
index d2ab4ef..8cef2b5 100644
--- a/var/spack/repos/builtin/packages/coreneuron/package.py
+++ b/var/spack/repos/builtin/packages/coreneuron/package.py
@@ -18,7 +18,7 @@ class Coreneuron(CMakePackage):
     url      = "https://github.com/BlueBrain/CoreNeuron"
     git      = "https://github.com/BlueBrain/CoreNeuron"

-    version('develop', branch='master')
+    version('develop', commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44")
     # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned
     version('1.0.0.20211020', commit='e265f9d')
     version('1.0.0.20211012', commit='846b3a6')
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron@develop%intel+nmodl+tests~legacy-unit build_type=Debug ^/lqyttqytclxdwwickak7uvjmb6a3au3g
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for nmodl@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be cwjs4t3f4wyl5jax3fb2obxbvjopwgn3
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114614/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114614/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 09:05:33 2021
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.36 / 0.51 (70.20 %)
  Files:            7512
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'cwjs4t3f4wyl5jax3fb2obxbvjopwgn3'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron@develop%intel~legacy-unit+nmodl+tests build_type=Debug
[+]      ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]          ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                  ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                      ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]                  ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]          ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]              ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                  ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                  ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]          ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64
[^]              ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]          ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64

Concretized
--------------------------------
 -   cwjs4t3  coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64
 -   ymcya3l      ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  pvpzjkl      ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64
 -   mxqypex      ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
 -   5mabxtb      ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  nnhu6zi      ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  2gn7wjx      ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  pjaxv63          ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64
[^]  wjshhip              ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64
[^]  gwht6mm          ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64
 -   nayogh4      ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  lqyttqy      ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]  ubiktsv          ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  yrbfda2              ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  oe2c27i                  ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  icfhbit                      ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  xfgkmkd                  ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  oe2hrft              ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  jo63uk3          ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  kcyedyh              ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  mikhjgq              ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  hziuwhj              ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  vpsqgcg                  ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  xgnwei3                  ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  gc3zsis              ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  557icag              ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  za7jmvs              ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  chpzzlm          ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64
[^]  4237mpr              ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  runxrmn          ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  d6t5uhn              ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  7eg3tqe      ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg)
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq
==> Installing coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3
==> No binary for coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 found: installing from source
==> Warning: Missing a source id for nmodl@develop
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-cwjs4t
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:             /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114614/_/ccache
  Primary config:              /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114614/_/ccache/ccache.conf
  Secondary config:            /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:               Thu Dec 23 09:20:06 2021
  Hits:                          81 /   95 (85.26 %)
    Direct:                       0 /   96 (0.00 %)
    Preprocessed:                81 /   96 (84.38 %)
  Misses:                        14
    Direct:                      96
    Preprocessed:                15
  Uncacheable:                   17
Primary storage:
  Hits:                          81 /  192 (42.19 %)
  Misses:                       111
  Cache size (GB):             0.36 / 0.51 (70.60 %)
  Files:                       7621
Uncacheable:
  Called for linking:            13
  Compiler produced no output:    1
  No input file:                  3
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640247610:step_script
[0Ksection_start:1640247610:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache coreneuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=89515 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 8182 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-6[0;m
[32;1mCreated cache[0;m
section_end:1640247648:archive_cache
[0Ksection_start:1640247648:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=92732 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114614 responseStatus[0;m=201 Created token[0;m=k8ykWs9P
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=92769 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114614 responseStatus[0;m=201 Created token[0;m=k8ykWs9P
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=92807 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114614 responseStatus[0;m=201 Created token[0;m=k8ykWs9P
section_end:1640247650:upload_artifacts_on_success
[0Ksection_start:1640247650:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640247650:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-coreneuron-nmodl-openmp-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640246621:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640246621:resolve_secrets
[0Ksection_start:1640246621:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor676272962, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114617
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114617, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114617_PROD_P112_CP2_C2
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144483
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114617_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114617 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114617 --ntasks=1 --jobid=144483 --cpus-per-task=6 --mem=30750M
section_end:1640246624:prepare_executor
[0Ksection_start:1640246624:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640246627:prepare_script
[0Ksection_start:1640246627:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640246627:get_sources
[0Ksection_start:1640246627:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for coreneuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=53871 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640246662:restore_cache
[0Ksection_start:1640246662:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:nmodl:gpu (114613)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=55159 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114613 responseStatus[0;m=200 OK token[0;m=rgz71GtS
section_end:1640246663:download_artifacts
[0Ksection_start:1640246663:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114617/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114617/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114617/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114617/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114617/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for coreneuron is commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py
index d2ab4ef..8cef2b5 100644
--- a/var/spack/repos/builtin/packages/coreneuron/package.py
+++ b/var/spack/repos/builtin/packages/coreneuron/package.py
@@ -18,7 +18,7 @@ class Coreneuron(CMakePackage):
     url      = "https://github.com/BlueBrain/CoreNeuron"
     git      = "https://github.com/BlueBrain/CoreNeuron"

-    version('develop', branch='master')
+    version('develop', commit="5c5b8a37c8bc659a2cecaaf54b16775851939d44")
     # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned
     version('1.0.0.20211020', commit='e265f9d')
     version('1.0.0.20211012', commit='846b3a6')
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron@develop%nvhpc+nmodl~openmp+gpu+tests~legacy-unit~report+sympy build_type=RelWithDebInfo ^/zfakioujxsm45dlnonboqvphrxexao57
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for nmodl@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be is6uybjw66hpxwgpzajec3egglb7vpaw
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114617/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114617/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 09:07:00 2021
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.39 / 0.51 (76.22 %)
  Files:            9576
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'is6uybjw66hpxwgpzajec3egglb7vpaw'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron@develop%nvhpc+gpu~legacy-unit+nmodl~openmp~report+sympy+tests build_type=RelWithDebInfo
[+]      ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]          ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]              ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                  ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]                      ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]                  ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]              ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]          ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]              ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]          ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]              ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]          ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]              ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64

Concretized
--------------------------------
 -   is6uybj  coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared+sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
 -   ilh3i6h      ^bison@3.6.4%nvhpc@21.11 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64
[^]  ugnnauj      ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
 -   3id4xmv      ^cmake@3.15.7%nvhpc@21.11~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[^]  rtdgzju      ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
 -   o7642tm      ^flex@2.6.4%nvhpc@21.11+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  rvmqyas      ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
 -   6yf3e2o      ^ninja@1.10.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  zfakiou      ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]  56d4qrp          ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  wmslpld              ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  oy6pnkw                  ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  boepiq7                      ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  qtsnebc                  ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  7ap4eon              ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  nklcaqd          ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  hv3l6m3              ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  ric2ffi              ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  tnxvjns              ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  nqd6d4a                  ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  dt3gjsu                  ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rlm5oq3              ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  auxibxx              ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  a5khbku              ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  4tb344r          ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]  ggibzjm              ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  qqqe57g          ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  7efatr5              ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ilh3i6hsazuqblyjs46wno4wkyhcaycx)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-ugnnaujozxx7u35zmkozzxs42p6ujetq)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-3id4xmvyepn3luv5kvzabnojgl4kjbvv)
==> cuda@11.5.1 : has external module in ['cuda/11.5.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.5.1-gygt6u (external cuda-11.5.1-rtdgzjuarsbhlad5e2q6z6hb35poq3ba)
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-o7642tm7j36qtzmyzthrmdbfctyfsdnn)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-rvmqyashdppnfjw5xoegvqeeaassuana)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-6yf3e2oymeefngifdautp2wd347lcijn)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-boepiq7qwlm3d6e5almdw67q65o5quqn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-wcwidth-0.1.7-a5khbk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-more-itertools-8.7.0-ric2ff
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-py-1.8.0-auxibx
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-7ap4eo
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pyparsing-2.4.2-nqd6d4
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pluggy-0.13.0-rlm5oq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-setuptools-50.3.2-qtsneb
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-7efatr
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-attrs-20.3.0-hv3l6m
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-oy6pnk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-six-1.16.0-dt3gjs
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-4tb344
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-qqqe57
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-wmslpl
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-packaging-19.2-tnxvjn
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-56d4qr
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-5.3.4-nklcaq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/nmodl-develop-zfakio
==> Installing coreneuron-develop-is6uybjw66hpxwgpzajec3egglb7vpaw
==> No binary for coreneuron-develop-is6uybjw66hpxwgpzajec3egglb7vpaw found: installing from source
==> Warning: Missing a source id for nmodl@develop
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/coreneuron-develop-is6uyb
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:    /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114617/_/ccache
  Primary config:     /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114617/_/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:      Thu Dec 23 09:26:05 2021
  Hits:                 83 /   95 (87.37 %)
    Direct:              1 /   95 (1.05 %)
    Preprocessed:       82 /   94 (87.23 %)
  Misses:               12
    Direct:             94
    Preprocessed:       12
  Uncacheable:          15
Primary storage:
  Hits:                 84 /  190 (44.21 %)
  Misses:              106
  Cache size (GB):    0.39 / 0.51 (76.68 %)
  Files:              9682
Uncacheable:
  Called for linking:   12
  No input file:         3
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640247966:step_script
[0Ksection_start:1640247966:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache coreneuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=107742 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 10243 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-6[0;m
[32;1mCreated cache[0;m
section_end:1640247989:archive_cache
[0Ksection_start:1640247989:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108282 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114617 responseStatus[0;m=201 Created token[0;m=2feyRA5b
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108315 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114617 responseStatus[0;m=201 Created token[0;m=2feyRA5b
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108346 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114617 responseStatus[0;m=201 Created token[0;m=2feyRA5b
section_end:1640247990:upload_artifacts_on_success
[0Ksection_start:1640247990:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640247991:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640245859:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640245859:resolve_secrets
[0Ksection_start:1640245859:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor564258084, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114628
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114628, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114628_PROD_P112_CP5_C5
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144408
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114628_PROD_P112_CP5_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114628 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114628 --ntasks=1 --jobid=144408 --cpus-per-task=6 --mem=30750M
section_end:1640245862:prepare_executor
[0Ksection_start:1640245862:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640245864:prepare_script
[0Ksection_start:1640245864:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640245865:get_sources
[0Ksection_start:1640245865:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for neuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=38670 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640245925:restore_cache
[0Ksection_start:1640245925:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:gpu (114618)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=40837 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114618 responseStatus[0;m=200 OK token[0;m=QZYD5PL_
section_end:1640245926:download_artifacts
[0Ksection_start:1640245926:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114628/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114628/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114628/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114628/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114628/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for neuron is branch="master"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/d4mbc44tzlxvfyp7iy3jomhrptr7oxvo^py-cython%gcc^py-numpy%gcc
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for neuron@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be btws4riobbseoweauaroqks3egxs5hg4
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114628/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114628/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 08:53:01 2021
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.50 / 0.51 (98.29 %)
  Files:            33625
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'btws4riobbseoweauaroqks3egxs5hg4'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory
[+]      ^coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]          ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
[^]          ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]          ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
 -       ^py-cython%gcc
 -       ^py-numpy%gcc

Concretized
--------------------------------
 -   btws4ri  neuron@develop%nvhpc@21.11+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64
 -   ilh3i6h      ^bison@3.6.4%nvhpc@21.11 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64
 -   3id4xmv      ^cmake@3.15.7%nvhpc@21.11~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[+]  d4mbc44      ^coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  ugnnauj          ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
[^]  rtdgzju          ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rvmqyas          ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
 -   o7642tm      ^flex@2.6.4%nvhpc@21.11+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  5hjnqo3      ^gettext@0.21%nvhpc@21.11+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64
[^]  uipobjs          ^bzip2@1.0.8%nvhpc@21.11+shared arch=linux-rhel7-x86_64
[^]  ruu3jsw          ^libiconv@1.16%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  bt3jq7e          ^libxml2@2.9.10%nvhpc@21.11~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64
[^]  av5lrep              ^pkgconf@1.7.3%nvhpc@21.11 patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64
[^]  l6r3lhl              ^xz@5.2.5%nvhpc@21.11~pic arch=linux-rhel7-x86_64
[^]  tx5mit7              ^zlib@1.2.11%nvhpc@21.11+optimize+pic+shared arch=linux-rhel7-x86_64
[^]  zuul7ic          ^ncurses@6.2%nvhpc@21.11~symlinks+termlib arch=linux-rhel7-x86_64
[^]  tnkl573          ^tar@1.28%nvhpc@21.11 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64
 -   6yf3e2o      ^ninja@1.10.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  arjv2hk      ^py-cython@0.29.21%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  qtsnebc          ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  boepiq7              ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  6upm4ih      ^py-mpi4py@3.0.3%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  k3gs7u3      ^py-numpy@1.19.4%gcc@9.3.0+blas+lapack arch=linux-rhel7-x86_64
[^]  syahjjg          ^intel-mkl@2018.3.222%gcc@9.3.0~ilp64+shared threads=none arch=linux-rhel7-x86_64
[^]  nklcaqd      ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  hv3l6m3          ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  ric2ffi          ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  tnxvjns          ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  nqd6d4a              ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  dt3gjsu              ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rlm5oq3          ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  qbjsyll              ^py-setuptools-scm@4.1.2%nvhpc@21.11+toml arch=linux-rhel7-x86_64
[^]  jtaqy3k                  ^py-toml@0.10.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  auxibxx          ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  a5khbku          ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  ghwc5fz      ^py-pytest-cov@2.8.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  vnepfwd          ^py-coverage@5.3%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rx3mekq      ^readline@8.0%nvhpc@21.11 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ilh3i6hsazuqblyjs46wno4wkyhcaycx)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-3id4xmvyepn3luv5kvzabnojgl4kjbvv)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-ugnnaujozxx7u35zmkozzxs42p6ujetq)
==> cuda@11.5.1 : has external module in ['cuda/11.5.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.5.1-gygt6u (external cuda-11.5.1-rtdgzjuarsbhlad5e2q6z6hb35poq3ba)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-rvmqyashdppnfjw5xoegvqeeaassuana)
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-o7642tm7j36qtzmyzthrmdbfctyfsdnn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-uipobjsrjwxnpkcrag4phvugoj7kn6h7)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/libiconv-1.16-ruu3js
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/pkgconf-1.7.3-av5lre
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/xz-5.2.5-l6r3lh
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-tx5mit7opia6t3thbrdiubnz57rttfux)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-zuul7ickymna5aj5244q6ttogpw3o7wr)
[+] /usr (external tar-1.28-tnkl5732tb2dcrmu5z5kndpoiolmqzwh)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-6yf3e2oymeefngifdautp2wd347lcijn)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-boepiq7qwlm3d6e5almdw67q65o5quqn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-rx3mekqaza7t4ajd57wqkzlm2yi7pihm)
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/coreneuron-develop-d4mbc4
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/libxml2-2.9.10-bt3jq7
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-setuptools-50.3.2-qtsneb
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-six-1.16.0-dt3gjs
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/gettext-0.21-5hjnqo
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-arjv2h
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pyparsing-2.4.2-nqd6d4
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-mpi4py-3.0.3-6upm4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-attrs-20.3.0-hv3l6m
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-coverage-5.3-vnepfw
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-toml-0.10.0-jtaqy3
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-more-itertools-8.7.0-ric2ff
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-wcwidth-0.1.7-a5khbk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-k3gs7u
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-packaging-19.2-tnxvjn
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-setuptools-scm-4.1.2-qbjsyl
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-py-1.8.0-auxibx
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pluggy-0.13.0-rlm5oq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-5.3.4-nklcaq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-cov-2.8.1-ghwc5f
==> Installing neuron-develop-btws4riobbseoweauaroqks3egxs5hg4
==> No binary for neuron-develop-btws4riobbseoweauaroqks3egxs5hg4 found: installing from source
==> Warning: Missing a source id for neuron@develop
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/neuron-develop-btws4r
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114628/_/ccache
  Primary config:           /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114628/_/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:            Thu Dec 23 09:19:24 2021
  Hits:                       529 /  901 (58.71 %)
    Direct:                    13 /  910 (1.43 %)
    Preprocessed:             516 /  891 (57.91 %)
  Misses:                     372
    Direct:                   897
    Preprocessed:             375
  Uncacheable:                134
Primary storage:
  Hits:                       577 / 1814 (31.81 %)
  Misses:                    1237
  Cache size (GB):           0.50 / 0.51 (98.46 %)
  Files:                    33717
  Cleanups:                    15
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         111
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640247568:step_script
[0Ksection_start:1640247568:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache neuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=87149 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 34278 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-6[0;m
[32;1mCreated cache[0;m
section_end:1640247683:archive_cache
[0Ksection_start:1640247683:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=94704 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114628 responseStatus[0;m=201 Created token[0;m=ypjztyys
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=94734 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114628 responseStatus[0;m=201 Created token[0;m=ypjztyys
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=94763 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114628 responseStatus[0;m=201 Created token[0;m=ypjztyys
section_end:1640247684:upload_artifacts_on_success
[0Ksection_start:1640247684:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640247685:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640245838:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640245838:resolve_secrets
[0Ksection_start:1640245838:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor853025613, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114625
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114625, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114625_PROD_P112_CP4_C4
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144406
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114625_PROD_P112_CP4_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114625 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114625 --ntasks=1 --jobid=144406 --cpus-per-task=6 --mem=30750M
section_end:1640245841:prepare_executor
[0Ksection_start:1640245841:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640245843:prepare_script
[0Ksection_start:1640245843:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640245844:get_sources
[0Ksection_start:1640245844:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for neuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=37629 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640245879:restore_cache
[0Ksection_start:1640245879:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:intel (114615)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=39100 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114615 responseStatus[0;m=200 OK token[0;m=q9XiFzx6
section_end:1640245880:download_artifacts
[0Ksection_start:1640245880:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114625/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114625/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114625/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114625/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114625/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for neuron is branch="master"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/aevgkbdozl3htdtjhrd5w65n3c6mb2jh
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for neuron@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be mvn7s3za436y6xrhbspwpy7pbewubnvm
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114625/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114625/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 08:52:36 2021
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (92.37 %)
  Files:            25127
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'mvn7s3za436y6xrhbspwpy7pbewubnvm'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron@develop%intel+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory
[+]      ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64
[^]          ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64
[^]          ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]          ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]              ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64
[^]                  ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64
[^]              ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]          ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64

Concretized
--------------------------------
 -   mvn7s3z  neuron@develop%intel@19.1.2.254+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64
 -   ymcya3l      ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
 -   mxqypex      ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[+]  aevgkbd      ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64
[^]  pvpzjkl          ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64
[^]  nnhu6zi          ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  2gn7wjx          ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  pjaxv63              ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64
[^]  wjshhip                  ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64
[^]  gwht6mm              ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  7eg3tqe          ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
 -   5mabxtb      ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  6vrzcuv      ^gettext@0.21%intel@19.1.2.254+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64
[^]  6zbb66a          ^bzip2@1.0.8%intel@19.1.2.254+shared arch=linux-rhel7-x86_64
[^]  qlmq4dv          ^libiconv@1.16%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  6lr2umn          ^libxml2@2.9.10%intel@19.1.2.254~python arch=linux-rhel7-x86_64
[^]  2qyzkdl              ^pkgconf@1.7.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  wzx3yy4              ^xz@5.2.5%intel@19.1.2.254~pic arch=linux-rhel7-x86_64
[^]  nedfnju          ^ncurses@6.2%intel@19.1.2.254~symlinks+termlib arch=linux-rhel7-x86_64
[^]  d4pg4b2          ^tar@1.28%intel@19.1.2.254 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64
 -   nayogh4      ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  i3t5fut      ^py-cython@0.29.21%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  xfgkmkd          ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  icfhbit              ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  mr7m2z7      ^py-mpi4py@3.0.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  l643i7a      ^py-numpy@1.19.4%intel@19.1.2.254+blas+lapack arch=linux-rhel7-x86_64
[^]  nnxc4wm          ^intel-mkl@2018.3.222%intel@19.1.2.254~ilp64+shared threads=none arch=linux-rhel7-x86_64
[+]  jo63uk3      ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  kcyedyh          ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  mikhjgq          ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  hziuwhj          ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  vpsqgcg              ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  xgnwei3              ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  gc3zsis          ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  ze65gmo              ^py-setuptools-scm@4.1.2%intel@19.1.2.254+toml arch=linux-rhel7-x86_64
[^]  p553wsa                  ^py-toml@0.10.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  557icag          ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  za7jmvs          ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64
 -   zniig3b      ^py-pytest-cov@2.8.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
 -   2v5wfwa          ^py-coverage@5.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  kej56sd      ^readline@8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3)
[+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu
==> Installing py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk
==> No binary for py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk found: installing from source
==> Warning: Missing a source id for neuron@develop
==> Fetching https://mirror.spack.io/_source-cache/archive/28/280baa8ec489c4f542f8940f9c4c2181f0306a8ee1a54eceba071a449fb870a0.tar.gz
==> py-coverage: Executing phase: 'build'
==> py-coverage: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-mr7m2z
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-aevgkb
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk
==> Installing py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe
==> No binary for py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/cc/cc6742d8bac45070217169f5f72ceee1e0e55b0221f54bcf24845972d3a47f2b.tar.gz
==> py-pytest-cov: Executing phase: 'build'
==> py-pytest-cov: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3
==> Installing neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm
==> No binary for neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm found: installing from source
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-mvn7s3
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114625/_/ccache
  Primary config:           /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114625/_/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:            Thu Dec 23 09:26:10 2021
  Hits:                       451 /  903 (49.94 %)
    Direct:                    16 /  912 (1.75 %)
    Preprocessed:             435 /  890 (48.88 %)
  Misses:                     452
    Direct:                   896
    Preprocessed:             455
  Uncacheable:                144
Primary storage:
  Hits:                       498 / 1818 (27.39 %)
  Misses:                    1320
  Cache size (GB):           0.43 / 0.51 (83.93 %)
  Files:                    22689
  Cleanups:                    11
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         121
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640247971:step_script
[0Ksection_start:1640247971:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache neuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=107861 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 23250 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-6[0;m
[32;1mCreated cache[0;m
section_end:1640248000:archive_cache
[0Ksection_start:1640248000:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108934 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114625 responseStatus[0;m=201 Created token[0;m=XVeLVHSr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=108962 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114625 responseStatus[0;m=201 Created token[0;m=XVeLVHSr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=109011 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114625 responseStatus[0;m=201 Created token[0;m=XVeLVHSr
section_end:1640248002:upload_artifacts_on_success
[0Ksection_start:1640248002:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640248002:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640247999:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640247999:resolve_secrets
[0Ksection_start:1640247999:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor604387590, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114626
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114626, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114626_PROD_P112_CP2_C2
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144500
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114626_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114626 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114626 --ntasks=1 --jobid=144500 --cpus-per-task=6 --mem=30750M
section_end:1640248002:prepare_executor
[0Ksection_start:1640248002:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640248005:prepare_script
[0Ksection_start:1640248005:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640248005:get_sources
[0Ksection_start:1640248005:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for neuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=109595 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640248038:restore_cache
[0Ksection_start:1640248038:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (114616)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=111528 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114616 responseStatus[0;m=200 OK token[0;m=yeFZenfr
section_end:1640248039:download_artifacts
[0Ksection_start:1640248039:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114626/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114626/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114626/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114626/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114626/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for neuron is branch="master"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/fzwojn4n4gs3mly2gllogfiwmaydujfg^py-cython%gcc^py-numpy%gcc
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for neuron@develop
==> Warning: Missing a source id for nmodl@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be gmrkbryjpmglziazibefpq5zk5edkyfe
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114626/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114626/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 09:28:07 2021
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.50 / 0.51 (98.46 %)
  Files:            33717
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'gmrkbryjpmglziazibefpq5zk5edkyfe'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory
[+]      ^coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]          ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
[^]          ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]          ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]          ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]              ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                  ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                      ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]                          ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]                      ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]                  ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]              ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                      ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                      ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]              ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]                  ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]              ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                  ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64
 -       ^py-cython%gcc
 -       ^py-numpy%gcc

Concretized
--------------------------------
 -   gmrkbry  neuron@develop%nvhpc@21.11+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64
 -   ilh3i6h      ^bison@3.6.4%nvhpc@21.11 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64
 -   3id4xmv      ^cmake@3.15.7%nvhpc@21.11~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[+]  fzwojn4      ^coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  ugnnauj          ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
[^]  rtdgzju          ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rvmqyas          ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  zfakiou          ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]  56d4qrp              ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  wmslpld                  ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  oy6pnkw                      ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  boepiq7                          ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  qtsnebc                      ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  7ap4eon                  ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  nklcaqd              ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  hv3l6m3                  ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  ric2ffi                  ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  tnxvjns                  ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  nqd6d4a                      ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  dt3gjsu                      ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rlm5oq3                  ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  auxibxx                  ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  a5khbku                  ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  4tb344r              ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]  ggibzjm                  ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  qqqe57g              ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  7efatr5                  ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64
 -   o7642tm      ^flex@2.6.4%nvhpc@21.11+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  5hjnqo3      ^gettext@0.21%nvhpc@21.11+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64
[^]  uipobjs          ^bzip2@1.0.8%nvhpc@21.11+shared arch=linux-rhel7-x86_64
[^]  ruu3jsw          ^libiconv@1.16%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  bt3jq7e          ^libxml2@2.9.10%nvhpc@21.11~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64
[^]  av5lrep              ^pkgconf@1.7.3%nvhpc@21.11 patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64
[^]  l6r3lhl              ^xz@5.2.5%nvhpc@21.11~pic arch=linux-rhel7-x86_64
[^]  tx5mit7              ^zlib@1.2.11%nvhpc@21.11+optimize+pic+shared arch=linux-rhel7-x86_64
[^]  zuul7ic          ^ncurses@6.2%nvhpc@21.11~symlinks+termlib arch=linux-rhel7-x86_64
[^]  tnkl573          ^tar@1.28%nvhpc@21.11 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64
 -   6yf3e2o      ^ninja@1.10.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  arjv2hk      ^py-cython@0.29.21%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  6upm4ih      ^py-mpi4py@3.0.3%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  k3gs7u3      ^py-numpy@1.19.4%gcc@9.3.0+blas+lapack arch=linux-rhel7-x86_64
[^]  syahjjg          ^intel-mkl@2018.3.222%gcc@9.3.0~ilp64+shared threads=none arch=linux-rhel7-x86_64
[^]  ghwc5fz      ^py-pytest-cov@2.8.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  vnepfwd          ^py-coverage@5.3%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rx3mekq      ^readline@8.0%nvhpc@21.11 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ilh3i6hsazuqblyjs46wno4wkyhcaycx)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-3id4xmvyepn3luv5kvzabnojgl4kjbvv)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-ugnnaujozxx7u35zmkozzxs42p6ujetq)
==> cuda@11.5.1 : has external module in ['cuda/11.5.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.5.1-gygt6u (external cuda-11.5.1-rtdgzjuarsbhlad5e2q6z6hb35poq3ba)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-rvmqyashdppnfjw5xoegvqeeaassuana)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-boepiq7qwlm3d6e5almdw67q65o5quqn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-o7642tm7j36qtzmyzthrmdbfctyfsdnn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-uipobjsrjwxnpkcrag4phvugoj7kn6h7)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/libiconv-1.16-ruu3js
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/pkgconf-1.7.3-av5lre
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/xz-5.2.5-l6r3lh
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-tx5mit7opia6t3thbrdiubnz57rttfux)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-zuul7ickymna5aj5244q6ttogpw3o7wr)
[+] /usr (external tar-1.28-tnkl5732tb2dcrmu5z5kndpoiolmqzwh)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-rx3mekqaza7t4ajd57wqkzlm2yi7pihm)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-6yf3e2oymeefngifdautp2wd347lcijn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-setuptools-50.3.2-qtsneb
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-py-1.8.0-auxibx
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-more-itertools-8.7.0-ric2ff
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-attrs-20.3.0-hv3l6m
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-wcwidth-0.1.7-a5khbk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pluggy-0.13.0-rlm5oq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-oy6pnk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-7ap4eo
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pyparsing-2.4.2-nqd6d4
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-six-1.16.0-dt3gjs
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-7efatr
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-4tb344
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/libxml2-2.9.10-bt3jq7
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-arjv2h
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-coverage-5.3-vnepfw
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-mpi4py-3.0.3-6upm4i
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-wmslpl
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-packaging-19.2-tnxvjn
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-qqqe57
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/gettext-0.21-5hjnqo
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-k3gs7u
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-56d4qr
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-5.3.4-nklcaq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/nmodl-develop-zfakio
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-cov-2.8.1-ghwc5f
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/coreneuron-develop-fzwojn
==> Installing neuron-develop-gmrkbryjpmglziazibefpq5zk5edkyfe
==> No binary for neuron-develop-gmrkbryjpmglziazibefpq5zk5edkyfe found: installing from source
==> Warning: Missing a source id for nmodl@develop
==> Warning: Missing a source id for neuron@develop
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'

Session terminated, killing shell... ...killed.
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 144500.4 ON r1i5n30 CANCELLED AT 2021-12-23T10:27:01 DUE TO TIME LIMIT ***
srun: error: r1i5n30: task 0: Terminated
section_end:1640251621:step_script
[0K[31;1mERROR: Job failed: execution took longer than 1h0m0s seconds
[0;m

## build-neuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640247659:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640247659:resolve_secrets
[0Ksection_start:1640247659:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor920205670, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114624
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114624, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114624_PROD_P112_CP3_C3
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144495
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114624_PROD_P112_CP3_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114624 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114624 --ntasks=1 --jobid=144495 --cpus-per-task=6 --mem=30750M
section_end:1640247660:prepare_executor
[0Ksection_start:1640247660:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640247664:prepare_script
[0Ksection_start:1640247664:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640247665:get_sources
[0Ksection_start:1640247665:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for neuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=93708 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640247845:restore_cache
[0Ksection_start:1640247845:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron+nmodl:intel (114614)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=102970 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114614 responseStatus[0;m=200 OK token[0;m=k8ykWs9P
section_end:1640247846:download_artifacts
[0Ksection_start:1640247846:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114624/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114624/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114624/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114624/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114624/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for neuron is branch="master"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/cwjs4t3f4wyl5jax3fb2obxbvjopwgn3
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for neuron@develop
==> Warning: Missing a source id for nmodl@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be jhigcl7ephcbe47kbyz2znl76v2kaeev
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114624/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114624/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 09:25:28 2021
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (92.37 %)
  Files:            25127
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'jhigcl7ephcbe47kbyz2znl76v2kaeev'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron@develop%intel+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory
[+]      ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64
[^]          ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64
[^]          ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]          ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]              ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64
[^]                  ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64
[^]              ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]          ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]              ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                      ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                          ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]                      ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                  ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                      ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]                      ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]              ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64
[^]                  ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]              ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]                  ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]          ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64

Concretized
--------------------------------
 -   jhigcl7  neuron@develop%intel@19.1.2.254+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64
 -   ymcya3l      ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
 -   mxqypex      ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[+]  cwjs4t3      ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64
[^]  pvpzjkl          ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64
[^]  nnhu6zi          ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  2gn7wjx          ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  pjaxv63              ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64
[^]  wjshhip                  ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64
[^]  gwht6mm              ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]  lqyttqy          ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]  ubiktsv              ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  yrbfda2                  ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  oe2c27i                      ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  icfhbit                          ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  xfgkmkd                      ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  oe2hrft                  ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  jo63uk3              ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  kcyedyh                  ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  mikhjgq                  ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  hziuwhj                  ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  vpsqgcg                      ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  xgnwei3                      ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  gc3zsis                  ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  557icag                  ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  za7jmvs                  ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  chpzzlm              ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64
[^]  4237mpr                  ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  runxrmn              ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  d6t5uhn                  ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  7eg3tqe          ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
 -   5mabxtb      ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  6vrzcuv      ^gettext@0.21%intel@19.1.2.254+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64
[^]  6zbb66a          ^bzip2@1.0.8%intel@19.1.2.254+shared arch=linux-rhel7-x86_64
[^]  qlmq4dv          ^libiconv@1.16%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  6lr2umn          ^libxml2@2.9.10%intel@19.1.2.254~python arch=linux-rhel7-x86_64
[^]  2qyzkdl              ^pkgconf@1.7.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  wzx3yy4              ^xz@5.2.5%intel@19.1.2.254~pic arch=linux-rhel7-x86_64
[^]  nedfnju          ^ncurses@6.2%intel@19.1.2.254~symlinks+termlib arch=linux-rhel7-x86_64
[^]  d4pg4b2          ^tar@1.28%intel@19.1.2.254 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64
 -   nayogh4      ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  i3t5fut      ^py-cython@0.29.21%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  mr7m2z7      ^py-mpi4py@3.0.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  l643i7a      ^py-numpy@1.19.4%intel@19.1.2.254+blas+lapack arch=linux-rhel7-x86_64
[^]  nnxc4wm          ^intel-mkl@2018.3.222%intel@19.1.2.254~ilp64+shared threads=none arch=linux-rhel7-x86_64
[+]  zniig3b      ^py-pytest-cov@2.8.1%intel@19.1.2.254 arch=linux-rhel7-x86_64
[+]  2v5wfwa          ^py-coverage@5.3%intel@19.1.2.254 arch=linux-rhel7-x86_64
[^]  kej56sd      ^readline@8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3)
[+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-mr7m2z
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-cwjs4t
==> Installing neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev
==> No binary for neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev found: installing from source
==> Warning: Missing a source id for nmodl@develop
==> Warning: Missing a source id for neuron@develop
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-jhigcl
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114624/_/ccache
  Primary config:           /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114624/_/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:            Thu Dec 23 10:04:03 2021
  Hits:                       453 /  902 (50.22 %)
    Direct:                    10 /  911 (1.10 %)
    Preprocessed:             443 /  895 (49.50 %)
  Misses:                     449
    Direct:                   901
    Preprocessed:             452
  Uncacheable:                144
Primary storage:
  Hits:                       466 / 1816 (25.66 %)
  Misses:                    1350
  Cache size (GB):           0.45 / 0.51 (87.67 %)
  Files:                    23619
  Cleanups:                    12
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         121
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.8.3
Autoloading py-virtualenv/16.7.6
Autoloading py-numpy/1.19.4
Autoloading py-mpi4py/3.0.3
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.1.0
Autoloading hdf5/1.10.7
[32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m
Returning the number of failed builds, 0
[32;1m$ exit ${num_failures}[0;m
section_end:1640250250:step_script
[0Ksection_start:1640250250:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache neuron-intel-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=165160 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache/: found 24180 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-6[0;m
[32;1mCreated cache[0;m
section_end:1640250350:archive_cache
[0Ksection_start:1640250350:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=167389 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114624 responseStatus[0;m=201 Created token[0;m=3GcEwyxJ
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=167420 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114624 responseStatus[0;m=201 Created token[0;m=3GcEwyxJ
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=167455 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=114624 responseStatus[0;m=201 Created token[0;m=3GcEwyxJ
section_end:1640250351:upload_artifacts_on_success
[0Ksection_start:1640250351:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640250352:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-openmp-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640247999:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640247999:resolve_secrets
[0Ksection_start:1640247999:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor766791527, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114627
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114627, optional exclusive flag , optional cpus per task flag --cpus-per-task=6
A slurm job will be created with name GL_J114627_PROD_P112_CP6_C6
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144501
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M  --job-name=GL_J114627_PROD_P112_CP6_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114627 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114627 --ntasks=1 --jobid=144501 --cpus-per-task=6 --mem=30750M
section_end:1640248002:prepare_executor
[0Ksection_start:1640248002:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640248005:prepare_script
[0Ksection_start:1640248005:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640248005:get_sources
[0Ksection_start:1640248005:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for neuron-nvhpc-6...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=109572 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1640248036:restore_cache
[0Ksection_start:1640248036:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron+nmodl~openmp:gpu (114617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=111082 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114617 responseStatus[0;m=200 OK token[0;m=2feyRA5b
section_end:1640248037:download_artifacts
[0Ksection_start:1640248037:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_CONFIG}[0;m
[32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114627/_/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114627/_/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114627/_/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:69     - $tempdir/$user/spack-stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     - ~/.spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # - $spack/var/spack/stage
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Directory in which to run tests and store test results.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:70     # Tests will be stored in directories named by date/time and package
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114627/_/spack-config/config.yaml:4                  # name/hash.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:2               source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114627/_/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:3               install_tree:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:4                 projections:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:20         all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6}
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:5                 root: $spack/opt/spack
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/config.yaml:6               build_jobs: 36
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     ccache: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:33     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:34     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:38
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:39
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:40     # Locations where different types of modules should be installed.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:76     module_roots:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:85       tcl: $spack/share/spack/modules
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:91       lmod: $spack/share/spack/lmod
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:96     test_stage: ~/.spack/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:104    misc_cache: ~/.spack/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:110    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:115    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:120    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:128    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:137    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:163    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:170    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:178    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:184    concretizer: original
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/etc/spack/defaults/config.yaml:189    db_lock_timeout: 300
_builtin                                                                                                          package_lock_timeout: !!null 'None'
[32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m
[32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m
[32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m
[32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m
[32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m
New ref for neuron is branch="master"
[32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m
[32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m
[32;1m$ fi[0;m
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/is6uybjw66hpxwgpzajec3egglb7vpaw^py-cython%gcc^py-numpy%gcc
[32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m
==> Warning: Missing a source id for neuron@develop
==> Warning: Missing a source id for nmodl@develop
[32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be fwu47zj5ksgprg63usqqvmnfvuvjnlmc
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m
[32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114627/_/ccache
  Primary config:   /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114627/_/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf
  Stats updated:    Thu Dec 23 09:28:07 2021
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.50 / 0.51 (98.46 %)
  Files:            33717
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'fwu47zj5ksgprg63usqqvmnfvuvjnlmc'
[32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory
[+]      ^coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared+sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]          ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
[^]          ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]          ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]          ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]              ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                  ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                      ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]                          ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]                      ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]                  ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]              ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                      ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                      ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]                  ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]              ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]                  ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]              ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]                  ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64
 -       ^py-cython%gcc
 -       ^py-numpy%gcc

Concretized
--------------------------------
 -   fwu47zj  neuron@develop%nvhpc@21.11+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64
 -   ilh3i6h      ^bison@3.6.4%nvhpc@21.11 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64
 -   3id4xmv      ^cmake@3.15.7%nvhpc@21.11~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64
[+]  is6uybj      ^coreneuron@develop%nvhpc@21.11~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared+sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[^]  ugnnauj          ^boost@1.73.0%nvhpc@21.11+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64
[^]  rtdgzju          ^cuda@11.5.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rvmqyas          ^hpe-mpi@2.25.hmpt%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  zfakiou          ^nmodl@develop%nvhpc@21.11~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64
[+]  56d4qrp              ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  wmslpld                  ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  oy6pnkw                      ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  boepiq7                          ^python@3.8.3%nvhpc@21.11+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64
[^]  qtsnebc                      ^py-setuptools@50.3.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  7ap4eon                  ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  nklcaqd              ^py-pytest@5.3.4%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  hv3l6m3                  ^py-attrs@20.3.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  ric2ffi                  ^py-more-itertools@8.7.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  tnxvjns                  ^py-packaging@19.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  nqd6d4a                      ^py-pyparsing@2.4.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  dt3gjsu                      ^py-six@1.16.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rlm5oq3                  ^py-pluggy@0.13.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  auxibxx                  ^py-py@1.8.0%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  a5khbku                  ^py-wcwidth@0.1.7%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  4tb344r              ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64
[^]  ggibzjm                  ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  qqqe57g              ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64
[+]  7efatr5                  ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64
 -   o7642tm      ^flex@2.6.4%nvhpc@21.11+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64
[^]  5hjnqo3      ^gettext@0.21%nvhpc@21.11+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64
[^]  uipobjs          ^bzip2@1.0.8%nvhpc@21.11+shared arch=linux-rhel7-x86_64
[^]  ruu3jsw          ^libiconv@1.16%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  bt3jq7e          ^libxml2@2.9.10%nvhpc@21.11~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64
[^]  av5lrep              ^pkgconf@1.7.3%nvhpc@21.11 patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64
[^]  l6r3lhl              ^xz@5.2.5%nvhpc@21.11~pic arch=linux-rhel7-x86_64
[^]  tx5mit7              ^zlib@1.2.11%nvhpc@21.11+optimize+pic+shared arch=linux-rhel7-x86_64
[^]  zuul7ic          ^ncurses@6.2%nvhpc@21.11~symlinks+termlib arch=linux-rhel7-x86_64
[^]  tnkl573          ^tar@1.28%nvhpc@21.11 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64
 -   6yf3e2o      ^ninja@1.10.2%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  arjv2hk      ^py-cython@0.29.21%gcc@9.3.0 arch=linux-rhel7-x86_64
[^]  6upm4ih      ^py-mpi4py@3.0.3%nvhpc@21.11 arch=linux-rhel7-x86_64
[+]  k3gs7u3      ^py-numpy@1.19.4%gcc@9.3.0+blas+lapack arch=linux-rhel7-x86_64
[^]  syahjjg          ^intel-mkl@2018.3.222%gcc@9.3.0~ilp64+shared threads=none arch=linux-rhel7-x86_64
[^]  ghwc5fz      ^py-pytest-cov@2.8.1%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  vnepfwd          ^py-coverage@5.3%nvhpc@21.11 arch=linux-rhel7-x86_64
[^]  rx3mekq      ^readline@8.0%nvhpc@21.11 arch=linux-rhel7-x86_64

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m
==> bison@3.6.4 : has external module in ['bison/3.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ilh3i6hsazuqblyjs46wno4wkyhcaycx)
==> cmake@3.15.7 : has external module in ['cmake/3.15.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-3id4xmvyepn3luv5kvzabnojgl4kjbvv)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-ugnnaujozxx7u35zmkozzxs42p6ujetq)
==> cuda@11.5.1 : has external module in ['cuda/11.5.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.5.1-gygt6u (external cuda-11.5.1-rtdgzjuarsbhlad5e2q6z6hb35poq3ba)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-rvmqyashdppnfjw5xoegvqeeaassuana)
==> python@3.8.3 : has external module in ['python/3.8.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-boepiq7qwlm3d6e5almdw67q65o5quqn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj
==> flex@2.6.4 : has external module in ['flex/2.6.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-o7642tm7j36qtzmyzthrmdbfctyfsdnn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-uipobjsrjwxnpkcrag4phvugoj7kn6h7)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/libiconv-1.16-ruu3js
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/pkgconf-1.7.3-av5lre
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/xz-5.2.5-l6r3lh
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-tx5mit7opia6t3thbrdiubnz57rttfux)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-zuul7ickymna5aj5244q6ttogpw3o7wr)
[+] /usr (external tar-1.28-tnkl5732tb2dcrmu5z5kndpoiolmqzwh)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-rx3mekqaza7t4ajd57wqkzlm2yi7pihm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-setuptools-50.3.2-qtsneb
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-7ap4eo
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-attrs-20.3.0-hv3l6m
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pyparsing-2.4.2-nqd6d4
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-six-1.16.0-dt3gjs
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-7efatr
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-6yf3e2oymeefngifdautp2wd347lcijn)
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-py-1.8.0-auxibx
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-more-itertools-8.7.0-ric2ff
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-oy6pnk
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pluggy-0.13.0-rlm5oq
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-wcwidth-0.1.7-a5khbk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-4tb344
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/libxml2-2.9.10-bt3jq7
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-coverage-5.3-vnepfw
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-mpi4py-3.0.3-6upm4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-arjv2h
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-packaging-19.2-tnxvjn
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-qqqe57
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-wmslpl
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/gettext-0.21-5hjnqo
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-k3gs7u
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-5.3.4-nklcaq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-56d4qr
[+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.11/py-pytest-cov-2.8.1-ghwc5f
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/nmodl-develop-zfakio
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114611/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.11/coreneuron-develop-is6uyb
==> Installing neuron-develop-fwu47zj5ksgprg63usqqvmnfvuvjnlmc
==> No binary for neuron-develop-fwu47zj5ksgprg63usqqvmnfvuvjnlmc found: installing from source
==> Warning: Missing a source id for nmodl@develop
==> Warning: Missing a source id for neuron@develop
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'

Session terminated, killing shell... ...killed.
srun: Job step aborted: Waiting up to 32 seconds for job step to finish.
slurmstepd: error: *** STEP 144501.4 ON r1i5n30 CANCELLED AT 2021-12-23T10:27:01 DUE TO TIME LIMIT ***
srun: error: r1i5n30: task 0: Terminated
section_end:1640251621:step_script
[0K[31;1mERROR: Job failed: execution took longer than 1h0m0s seconds
[0;m

## GitLab logs for bluebrain-coreneuron#713
!

## test-coreneuron-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640245858:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640245858:resolve_secrets
[0Ksection_start:1640245858:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor629993890, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114623
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114623, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114623_PROD_P112_CP3_C3
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 144407
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114623_PROD_P112_CP3_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114623 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114623 --ntasks=8 --jobid=144407 --cpus-per-task=1 --mem=30750M
section_end:1640245859:prepare_executor
[0Ksection_start:1640245859:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1640245860:prepare_script
[0Ksection_start:1640245860:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640245861:get_sources
[0Ksection_start:1640245861:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:gpu (114618)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=75610 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114618 responseStatus[0;m=200 OK token[0;m=QZYD5PL_
section_end:1640245862:download_artifacts
[0Ksection_start:1640245862:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-nvc++
Create new tag: 20211223-0751 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114618/_/spack-build/spack-stage-coreneuron-develop-d4mbc44tzlxvfyp7iy3jomhrptr7oxvo/spack-build-d4mbc44
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
 1/18 Test  #2: interleave_info_constructor_test .......   Passed    3.16 sec
      Start  7: ring_binqueue_TEST
 2/18 Test  #1: cmd_interface_test .....................   Passed    3.18 sec
 3/18 Test  #3: alignment_test .........................   Passed    3.46 sec
      Start  8: ring_multisend_TEST
 4/18 Test  #5: lfp_test ...............................   Passed    3.47 sec
 5/18 Test  #4: queuing_test ...........................   Passed    3.66 sec
      Start  9: ring_spike_buffer_TEST
 6/18 Test  #6: ring_TEST ..............................   Passed    4.80 sec
      Start 10: ring_permute1_TEST
 7/18 Test  #7: ring_binqueue_TEST .....................   Passed    5.95 sec
      Start 11: ring_permute2_TEST
 8/18 Test  #8: ring_multisend_TEST ....................   Passed    8.81 sec
      Start 12: ring_gap_TEST
 9/18 Test  #9: ring_spike_buffer_TEST .................   Passed    8.89 sec
      Start 13: ring_gap_binqueue_TEST
10/18 Test #10: ring_permute1_TEST .....................   Passed    8.38 sec
      Start 14: ring_gap_multisend_TEST
11/18 Test #11: ring_permute2_TEST .....................   Passed    6.82 sec
      Start 15: ring_gap_permute1_TEST
12/18 Test #12: ring_gap_TEST ..........................   Passed    9.01 sec
      Start 16: ring_gap_permute2_TEST
13/18 Test #13: ring_gap_binqueue_TEST .................   Passed    8.87 sec
      Start 17: ring_permute2_cudaInterface_TEST
14/18 Test #14: ring_gap_multisend_TEST ................   Passed    8.58 sec
      Start 18: ring_gap_permute2_cudaInterface_TEST
15/18 Test #15: ring_gap_permute1_TEST .................   Passed   10.31 sec
16/18 Test #16: ring_gap_permute2_TEST .................   Passed    7.42 sec
17/18 Test #17: ring_permute2_cudaInterface_TEST .......   Passed    7.41 sec
18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ...   Passed    9.07 sec

100% tests passed, 0 tests failed out of 18

Total Test time (real) =  30.87 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640245935:step_script
[0Ksection_start:1640245935:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=77267 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114623 responseStatus[0;m=201 Created token[0;m=my2Tyyfu
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=77298 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114623 responseStatus[0;m=201 Created token[0;m=my2Tyyfu
section_end:1640245936:upload_artifacts_on_success
[0Ksection_start:1640245936:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640245936:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640245837:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640245837:resolve_secrets
[0Ksection_start:1640245837:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor284334883, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114620
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114620, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114620_PROD_P112_CP2_C2
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144405
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114620_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114620 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114620 --ntasks=8 --jobid=144405 --cpus-per-task=1 --mem=30750M
section_end:1640245838:prepare_executor
[0Ksection_start:1640245838:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640245841:prepare_script
[0Ksection_start:1640245841:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640245842:get_sources
[0Ksection_start:1640245842:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:intel (114615)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=37046 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114615 responseStatus[0;m=200 OK token[0;m=q9XiFzx6
section_end:1640245843:download_artifacts
[0Ksection_start:1640245843:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-icpc
Create new tag: 20211223-0751 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114615/_/spack-build/spack-stage-coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh/spack-build-aevgkbd
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 17: reporting_1
 1/17 Test  #3: alignment_test .....................   Passed    4.95 sec
 2/17 Test  #4: queuing_test .......................   Passed    5.17 sec
      Start  7: ring_binqueue_TEST
 3/17 Test  #2: interleave_info_constructor_test ...   Passed    5.32 sec
 4/17 Test  #6: ring_TEST ..........................   Passed    5.31 sec
      Start  8: ring_multisend_TEST
 5/17 Test  #1: cmd_interface_test .................   Passed    5.54 sec
      Start  9: ring_spike_buffer_TEST
 6/17 Test #17: reporting_1 ........................   Passed    5.54 sec
 7/17 Test  #5: lfp_test ...........................   Passed    5.64 sec
      Start 10: ring_permute1_TEST
 8/17 Test  #8: ring_multisend_TEST ................   Passed    4.01 sec
      Start 11: ring_permute2_TEST
 9/17 Test  #9: ring_spike_buffer_TEST .............   Passed    3.92 sec
      Start 12: ring_gap_TEST
10/17 Test  #7: ring_binqueue_TEST .................   Passed    4.27 sec
      Start 13: ring_gap_binqueue_TEST
11/17 Test #10: ring_permute1_TEST .................   Passed    3.81 sec
      Start 14: ring_gap_multisend_TEST
12/17 Test #11: ring_permute2_TEST .................   Passed    5.62 sec
      Start 15: ring_gap_permute1_TEST
13/17 Test #12: ring_gap_TEST ......................   Passed    6.19 sec
      Start 16: ring_gap_permute2_TEST
14/17 Test #13: ring_gap_binqueue_TEST .............   Passed    6.19 sec
15/17 Test #14: ring_gap_multisend_TEST ............   Passed    6.24 sec
16/17 Test #15: ring_gap_permute1_TEST .............   Passed    2.49 sec
17/17 Test #16: ring_gap_permute2_TEST .............   Passed    2.00 sec

100% tests passed, 0 tests failed out of 17

Total Test time (real) =  17.69 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640245934:step_script
[0Ksection_start:1640245934:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=41499 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114620 responseStatus[0;m=201 Created token[0;m=JHRuT9eM
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=41532 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114620 responseStatus[0;m=201 Created token[0;m=JHRuT9eM
section_end:1640245935:upload_artifacts_on_success
[0Ksection_start:1640245935:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640245937:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-nmodl-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640247998:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640247998:resolve_secrets
[0Ksection_start:1640247998:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor532632498, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114621
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114621, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114621_PROD_P112_CP0_C0
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 144498
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114621_PROD_P112_CP0_C0 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114621 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114621 --ntasks=8 --jobid=144498 --cpus-per-task=1 --mem=30750M
section_end:1640247999:prepare_executor
[0Ksection_start:1640247999:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1640248000:prepare_script
[0Ksection_start:1640248000:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640248001:get_sources
[0Ksection_start:1640248001:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (114616)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=8250 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114616 responseStatus[0;m=200 OK token[0;m=yeFZenfr
section_end:1640248002:download_artifacts
[0Ksection_start:1640248002:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-nvc++
Create new tag: 20211223-0827 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114616/_/spack-build/spack-stage-coreneuron-develop-fzwojn4n4gs3mly2gllogfiwmaydujfg/spack-build-fzwojn4
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
 1/18 Test  #1: cmd_interface_test .....................   Passed    3.16 sec
      Start  7: ring_binqueue_TEST
 2/18 Test  #2: interleave_info_constructor_test .......   Passed    3.31 sec
 3/18 Test  #3: alignment_test .........................   Passed    3.56 sec
      Start  8: ring_multisend_TEST
 4/18 Test  #4: queuing_test ...........................   Passed    3.57 sec
 5/18 Test  #5: lfp_test ...............................   Passed    3.68 sec
      Start  9: ring_spike_buffer_TEST
 6/18 Test  #6: ring_TEST ..............................   Passed   16.60 sec
      Start 10: ring_permute1_TEST
 7/18 Test  #7: ring_binqueue_TEST .....................   Passed   34.30 sec
      Start 11: ring_permute2_TEST
 8/18 Test  #8: ring_multisend_TEST ....................   Passed   33.98 sec
      Start 12: ring_gap_TEST
 9/18 Test  #9: ring_spike_buffer_TEST .................   Passed   33.90 sec
      Start 13: ring_gap_binqueue_TEST
10/18 Test #10: ring_permute1_TEST .....................   Passed   29.71 sec
      Start 14: ring_gap_multisend_TEST
11/18 Test #11: ring_permute2_TEST .....................   Passed   28.65 sec
      Start 15: ring_gap_permute1_TEST
12/18 Test #13: ring_gap_binqueue_TEST .................   Passed   43.47 sec
      Start 16: ring_gap_permute2_TEST
13/18 Test #14: ring_gap_multisend_TEST ................   Passed   79.58 sec
      Start 17: ring_permute2_cudaInterface_TEST
14/18 Test #12: ring_gap_TEST ..........................   Passed   95.62 sec
      Start 18: ring_gap_permute2_cudaInterface_TEST
15/18 Test #17: ring_permute2_cudaInterface_TEST .......   Passed   14.17 sec
16/18 Test #15: ring_gap_permute1_TEST .................   Passed   93.06 sec
17/18 Test #16: ring_gap_permute2_TEST .................   Passed   78.72 sec
18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ...   Passed   26.64 sec

100% tests passed, 0 tests failed out of 18

Total Test time (real) = 159.83 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640248228:step_script
[0Ksection_start:1640248228:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16911 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114621 responseStatus[0;m=201 Created token[0;m=s4NzPTA7
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16942 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114621 responseStatus[0;m=201 Created token[0;m=s4NzPTA7
section_end:1640248229:upload_artifacts_on_success
[0Ksection_start:1640248229:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640248231:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640247658:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640247658:resolve_secrets
[0Ksection_start:1640247658:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor555108628, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114619
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114619, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114619_PROD_P112_CP0_C0
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144494
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114619_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114619 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114619 --ntasks=8 --jobid=144494 --cpus-per-task=1 --mem=30750M
section_end:1640247660:prepare_executor
[0Ksection_start:1640247660:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640247665:prepare_script
[0Ksection_start:1640247665:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640247666:get_sources
[0Ksection_start:1640247666:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron+nmodl:intel (114614)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=93796 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114614 responseStatus[0;m=200 OK token[0;m=k8ykWs9P
section_end:1640247667:download_artifacts
[0Ksection_start:1640247667:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-icpc
Create new tag: 20211223-0824 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114614/_/spack-build/spack-stage-coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3/spack-build-cwjs4t3
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 17: reporting_1
 1/17 Test  #3: alignment_test .....................   Passed    2.29 sec
 2/17 Test  #1: cmd_interface_test .................   Passed    3.21 sec
      Start  7: ring_binqueue_TEST
 3/17 Test  #4: queuing_test .......................   Passed    3.38 sec
 4/17 Test  #2: interleave_info_constructor_test ...   Passed    3.56 sec
      Start  8: ring_multisend_TEST
 5/17 Test #17: reporting_1 ........................   Passed    3.79 sec
 6/17 Test  #5: lfp_test ...........................   Passed    3.85 sec
      Start  9: ring_spike_buffer_TEST
 7/17 Test  #6: ring_TEST ..........................   Passed    3.87 sec
      Start 10: ring_permute1_TEST
 8/17 Test  #7: ring_binqueue_TEST .................   Passed    3.26 sec
      Start 11: ring_permute2_TEST
 9/17 Test  #8: ring_multisend_TEST ................   Passed    3.66 sec
      Start 12: ring_gap_TEST
10/17 Test  #9: ring_spike_buffer_TEST .............   Passed    3.46 sec
      Start 13: ring_gap_binqueue_TEST
11/17 Test #10: ring_permute1_TEST .................   Passed    3.53 sec
      Start 14: ring_gap_multisend_TEST
12/17 Test #11: ring_permute2_TEST .................   Passed    1.77 sec
      Start 15: ring_gap_permute1_TEST
13/17 Test #12: ring_gap_TEST ......................   Passed    2.98 sec
      Start 16: ring_gap_permute2_TEST
14/17 Test #14: ring_gap_multisend_TEST ............   Passed    3.70 sec
15/17 Test #13: ring_gap_binqueue_TEST .............   Passed    4.22 sec
16/17 Test #15: ring_gap_permute1_TEST .............   Passed    3.36 sec
17/17 Test #16: ring_gap_permute2_TEST .............   Passed    1.74 sec

100% tests passed, 0 tests failed out of 17

Total Test time (real) =  12.00 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640247897:step_script
[0Ksection_start:1640247897:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=105364 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114619 responseStatus[0;m=201 Created token[0;m=9yb_reA6
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=105396 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114619 responseStatus[0;m=201 Created token[0;m=9yb_reA6
section_end:1640247898:upload_artifacts_on_success
[0Ksection_start:1640247898:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640247899:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-nmodl-openmp-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640247998:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640247998:resolve_secrets
[0Ksection_start:1640247998:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor371724724, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114622
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114622, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114622_PROD_P112_CP1_C1
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 144499
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114622_PROD_P112_CP1_C1 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114622 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114622 --ntasks=8 --jobid=144499 --cpus-per-task=1 --mem=30750M
section_end:1640248002:prepare_executor
[0Ksection_start:1640248002:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1640248003:prepare_script
[0Ksection_start:1640248003:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640248004:get_sources
[0Ksection_start:1640248004:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron+nmodl~openmp:gpu (114617)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=8878 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114617 responseStatus[0;m=200 OK token[0;m=2feyRA5b
section_end:1640248005:download_artifacts
[0Ksection_start:1640248005:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-nvc++
Create new tag: 20211223-0827 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114617/_/spack-build/spack-stage-coreneuron-develop-is6uybjw66hpxwgpzajec3egglb7vpaw/spack-build-is6uybj
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
 1/18 Test  #2: interleave_info_constructor_test .......   Passed    3.16 sec
      Start  7: ring_binqueue_TEST
 2/18 Test  #3: alignment_test .........................   Passed    3.42 sec
 3/18 Test  #5: lfp_test ...............................   Passed    3.61 sec
      Start  8: ring_multisend_TEST
 4/18 Test  #1: cmd_interface_test .....................   Passed    3.84 sec
 5/18 Test  #4: queuing_test ...........................   Passed    3.84 sec
      Start  9: ring_spike_buffer_TEST
 6/18 Test  #6: ring_TEST ..............................   Passed   18.74 sec
      Start 10: ring_permute1_TEST
 7/18 Test  #7: ring_binqueue_TEST .....................   Passed   33.63 sec
      Start 11: ring_permute2_TEST
 8/18 Test  #9: ring_spike_buffer_TEST .................   Passed   33.26 sec
      Start 12: ring_gap_TEST
 9/18 Test  #8: ring_multisend_TEST ....................   Passed   33.62 sec
      Start 13: ring_gap_binqueue_TEST
10/18 Test #10: ring_permute1_TEST .....................   Passed   29.65 sec
      Start 14: ring_gap_multisend_TEST
11/18 Test #11: ring_permute2_TEST .....................   Passed   22.05 sec
      Start 15: ring_gap_permute1_TEST
12/18 Test #13: ring_gap_binqueue_TEST .................   Passed   33.23 sec
      Start 16: ring_gap_permute2_TEST
13/18 Test #12: ring_gap_TEST ..........................   Passed   35.52 sec
      Start 17: ring_permute2_cudaInterface_TEST
14/18 Test #14: ring_gap_multisend_TEST ................   Passed   26.25 sec
      Start 18: ring_gap_permute2_cudaInterface_TEST
15/18 Test #15: ring_gap_permute1_TEST .................   Passed   17.83 sec
16/18 Test #17: ring_permute2_cudaInterface_TEST .......   Passed   18.21 sec
17/18 Test #16: ring_gap_permute2_TEST .................   Passed   22.13 sec
18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ...   Passed   18.07 sec

100% tests passed, 0 tests failed out of 18

Total Test time (real) =  92.74 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640248159:step_script
[0Ksection_start:1640248159:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16186 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114622 responseStatus[0;m=201 Created token[0;m=uZA6zRGw
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16225 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114622 responseStatus[0;m=201 Created token[0;m=uZA6zRGw
section_end:1640248160:upload_artifacts_on_success
[0Ksection_start:1640248160:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640248161:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-gpu.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640247691:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640247691:resolve_secrets
[0Ksection_start:1640247691:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor278698447, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114633
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114633, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114633_PROD_P112_CP5_C5
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 144496
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114633_PROD_P112_CP5_C5 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114633 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114633 --ntasks=8 --jobid=144496 --cpus-per-task=1 --mem=30750M
section_end:1640247693:prepare_executor
[0Ksection_start:1640247693:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1640247694:prepare_script
[0Ksection_start:1640247694:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640247695:get_sources
[0Ksection_start:1640247695:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron:gpu (114628)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=2632 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114628 responseStatus[0;m=200 OK token[0;m=ypjztyys
section_end:1640247695:download_artifacts
[0Ksection_start:1640247695:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-nvc++
Create new tag: 20211223-0822 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114628/_/spack-build/spack-stage-neuron-develop-btws4riobbseoweauaroqks3egxs5hg4/spack-build-btws4ri
        Start  48: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  52: external_ringtest::coreneuron_gpu_mpi_offline::preparation
        Start  59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation
        Start  63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  69: testcorenrn_deriv::coreneuron_gpu_offline::preparation
        Start  73: testcorenrn_deriv::coreneuron_cpu_offline::preparation
  1/162 Test  #63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    2.56 sec
        Start  87: testcorenrn_patstim::coreneuron_gpu_offline::preparation
  2/162 Test  #59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............   Passed    2.94 sec
        Start 125: testcorenrn_conc::coreneuron_gpu_offline::preparation
  3/162 Test  #73: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    2.94 sec
        Start 129: testcorenrn_conc::coreneuron_cpu_offline::preparation
  4/162 Test  #69: testcorenrn_deriv::coreneuron_gpu_offline::preparation .............   Passed    3.07 sec
        Start 135: testcorenrn_kin::coreneuron_gpu_offline::preparation
  5/162 Test  #87: testcorenrn_patstim::coreneuron_gpu_offline::preparation ...........   Passed    2.22 sec
        Start 139: testcorenrn_kin::coreneuron_cpu_offline::preparation
  6/162 Test #135: testcorenrn_kin::coreneuron_gpu_offline::preparation ...............   Passed    1.96 sec
        Start  44: external_ringtest::neuron
  7/162 Test #125: testcorenrn_conc::coreneuron_gpu_offline::preparation ..............   Passed    2.24 sec
        Start  55: testcorenrn_bbcore::neuron
  8/162 Test #129: testcorenrn_conc::coreneuron_cpu_offline::preparation ..............   Passed    2.25 sec
        Start  56: testcorenrn_bbcore::coreneuron_gpu_online
  9/162 Test  #44: external_ringtest::neuron ..........................................   Passed    1.38 sec
        Start  57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate
 10/162 Test #139: testcorenrn_kin::coreneuron_cpu_offline::preparation ...............   Passed    2.18 sec
        Start  58: testcorenrn_bbcore::coreneuron_gpu_offline
 11/162 Test  #55: testcorenrn_bbcore::neuron .........................................   Passed    1.86 sec
        Start  60: testcorenrn_bbcore::coreneuron_cpu_online
 12/162 Test  #52: external_ringtest::coreneuron_gpu_mpi_offline::preparation .........   Passed    8.50 sec
        Start  79: testcorenrn_gf::coreneuron_gpu_offline::preparation
 13/162 Test  #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed    8.88 sec
        Start  83: testcorenrn_gf::coreneuron_cpu_offline::preparation
 14/162 Test  #60: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    2.94 sec
        Start  61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 15/162 Test  #79: testcorenrn_gf::coreneuron_gpu_offline::preparation ................   Passed    2.48 sec
        Start  89: testcorenrn_patstim::coreneuron_cpu_offline::preparation
 16/162 Test  #56: testcorenrn_bbcore::coreneuron_gpu_online ..........................   Passed    5.81 sec
        Start  62: testcorenrn_bbcore::coreneuron_cpu_offline
 17/162 Test  #58: testcorenrn_bbcore::coreneuron_gpu_offline .........................   Passed    4.15 sec
        Start  65: testcorenrn_deriv::neuron
 18/162 Test  #83: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    2.32 sec
        Start  95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation
 19/162 Test  #57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate .........   Passed    6.20 sec
        Start  66: testcorenrn_deriv::coreneuron_gpu_online
 20/162 Test  #65: testcorenrn_deriv::neuron ..........................................   Passed    2.40 sec
        Start  67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate
 21/162 Test  #95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ...........   Passed    3.04 sec
        Start  99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 22/162 Test  #89: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    3.29 sec
        Start 115: testcorenrn_watch::coreneuron_gpu_offline::preparation
 23/162 Test  #99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    2.41 sec
        Start 119: testcorenrn_watch::coreneuron_cpu_offline::preparation
 24/162 Test #115: testcorenrn_watch::coreneuron_gpu_offline::preparation .............   Passed    2.41 sec
        Start  45: external_ringtest::neuron_mpi
 25/162 Test  #62: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    6.79 sec
        Start  68: testcorenrn_deriv::coreneuron_gpu_offline
 26/162 Test  #61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    9.06 sec
        Start  70: testcorenrn_deriv::coreneuron_cpu_online
 27/162 Test #119: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    2.55 sec
        Start  46: external_ringtest::coreneuron_cpu_mpi
 28/162 Test  #66: testcorenrn_deriv::coreneuron_gpu_online ...........................   Passed    8.37 sec
        Start  71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 29/162 Test  #67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate ..........   Passed    7.98 sec
        Start  72: testcorenrn_deriv::coreneuron_cpu_offline
 30/162 Test  #70: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed    3.38 sec
        Start  86: testcorenrn_patstim::coreneuron_gpu_offline
 31/162 Test  #68: testcorenrn_deriv::coreneuron_gpu_offline ..........................   Passed    5.23 sec
        Start 121: testcorenrn_conc::neuron
 32/162 Test  #45: external_ringtest::neuron_mpi ......................................   Passed    6.41 sec
        Start  47: external_ringtest::coreneuron_cpu_mpi_offline
 33/162 Test  #72: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed    2.34 sec
        Start 122: testcorenrn_conc::coreneuron_gpu_online
 34/162 Test  #71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed    3.79 sec
        Start 123: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate
 35/162 Test #121: testcorenrn_conc::neuron ...........................................   Passed    2.11 sec
        Start 124: testcorenrn_conc::coreneuron_gpu_offline
 36/162 Test  #86: testcorenrn_patstim::coreneuron_gpu_offline ........................   Passed    3.41 sec
        Start 126: testcorenrn_conc::coreneuron_cpu_online
 37/162 Test  #46: external_ringtest::coreneuron_cpu_mpi ..............................   Passed    6.72 sec
        Start  50: external_ringtest::coreneuron_gpu_mpi
 38/162 Test  #47: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed    5.11 sec
        Start  51: external_ringtest::coreneuron_gpu_mpi_offline
 39/162 Test #126: testcorenrn_conc::coreneuron_cpu_online ............................   Passed    4.81 sec
        Start 127: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 40/162 Test #122: testcorenrn_conc::coreneuron_gpu_online ............................   Passed    7.25 sec
        Start 128: testcorenrn_conc::coreneuron_cpu_offline
 41/162 Test #124: testcorenrn_conc::coreneuron_gpu_offline ...........................   Passed    5.96 sec
        Start 131: testcorenrn_kin::neuron
 42/162 Test #123: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ...........   Passed    6.39 sec
        Start 132: testcorenrn_kin::coreneuron_gpu_online
 43/162 Test #131: testcorenrn_kin::neuron ............................................   Passed    1.60 sec
        Start 133: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate
 44/162 Test #128: testcorenrn_conc::coreneuron_cpu_offline ...........................   Passed    3.15 sec
        Start 134: testcorenrn_kin::coreneuron_gpu_offline
 45/162 Test #127: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ...........   Passed    5.26 sec
        Start 136: testcorenrn_kin::coreneuron_cpu_online
 46/162 Test #132: testcorenrn_kin::coreneuron_gpu_online .............................   Passed    6.65 sec
        Start 137: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 47/162 Test #134: testcorenrn_kin::coreneuron_gpu_offline ............................   Passed    5.05 sec
        Start 138: testcorenrn_kin::coreneuron_cpu_offline
 48/162 Test #136: testcorenrn_kin::coreneuron_cpu_online .............................   Passed    3.64 sec
        Start 144: channel_benchmark_hippo::neuron
 49/162 Test #133: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............   Passed    7.54 sec
        Start 145: channel_benchmark_hippo::coreneuron_gpu_online
 50/162 Test  #51: external_ringtest::coreneuron_gpu_mpi_offline ......................   Passed   14.18 sec
        Start  75: testcorenrn_gf::neuron
 51/162 Test #137: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............   Passed    4.87 sec
        Start 146: channel_benchmark_hippo::coreneuron_gpu_filemode
 52/162 Test  #50: external_ringtest::coreneuron_gpu_mpi ..............................   Passed   16.87 sec
        Start  76: testcorenrn_gf::coreneuron_gpu_online
 53/162 Test #138: testcorenrn_kin::coreneuron_cpu_offline ............................   Passed    6.30 sec
        Start 147: channel_benchmark_hippo::coreneuron_cpu_online
 54/162 Test  #75: testcorenrn_gf::neuron .............................................   Passed    5.51 sec
        Start  77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate
 55/162 Test  #76: testcorenrn_gf::coreneuron_gpu_online ..............................   Passed   40.55 sec
        Start  78: testcorenrn_gf::coreneuron_gpu_offline
 56/162 Test  #77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate .............   Passed   44.18 sec
        Start  80: testcorenrn_gf::coreneuron_cpu_online
 57/162 Test  #78: testcorenrn_gf::coreneuron_gpu_offline .............................   Passed   22.81 sec
        Start  81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 58/162 Test  #80: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed   24.90 sec
        Start  82: testcorenrn_gf::coreneuron_cpu_offline
 59/162 Test #144: channel_benchmark_hippo::neuron ....................................   Passed   87.51 sec
        Start 148: channel_benchmark_hippo::coreneuron_cpu_filemode
 60/162 Test  #81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   22.00 sec
        Start  85: testcorenrn_patstim::neuron
 61/162 Test  #85: testcorenrn_patstim::neuron ........................................   Passed    2.14 sec
        Start  88: testcorenrn_patstim::coreneuron_cpu_offline
 62/162 Test #145: channel_benchmark_hippo::coreneuron_gpu_online .....................   Passed   90.73 sec
        Start 150: channel_benchmark_sscx::neuron
 63/162 Test  #82: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed   17.73 sec
        Start  91: testcorenrn_vecplay::neuron
 64/162 Test #146: channel_benchmark_hippo::coreneuron_gpu_filemode ...................   Passed   92.87 sec
        Start 151: channel_benchmark_sscx::coreneuron_gpu_online
 65/162 Test  #91: testcorenrn_vecplay::neuron ........................................   Passed    2.28 sec
        Start  92: testcorenrn_vecplay::coreneuron_gpu_online
 66/162 Test #147: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed   93.83 sec
        Start 152: channel_benchmark_sscx::coreneuron_gpu_filemode
 67/162 Test  #88: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed   13.43 sec
        Start  93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate
 68/162 Test  #92: testcorenrn_vecplay::coreneuron_gpu_online .........................   Passed   27.04 sec
        Start  94: testcorenrn_vecplay::coreneuron_gpu_offline
 69/162 Test  #93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........   Passed   36.60 sec
        Start  96: testcorenrn_vecplay::coreneuron_cpu_online
 70/162 Test  #94: testcorenrn_vecplay::coreneuron_gpu_offline ........................   Passed   25.43 sec
        Start  97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 71/162 Test  #96: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed   17.27 sec
        Start  98: testcorenrn_vecplay::coreneuron_cpu_offline
 72/162 Test #150: channel_benchmark_sscx::neuron .....................................   Passed   81.49 sec
        Start 153: channel_benchmark_sscx::coreneuron_cpu_online
 73/162 Test  #97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   23.29 sec
        Start 111: testcorenrn_watch::neuron
 74/162 Test  #98: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed   15.65 sec
        Start 112: testcorenrn_watch::coreneuron_gpu_online
 75/162 Test #151: channel_benchmark_sscx::coreneuron_gpu_online ......................   Passed   83.09 sec
        Start 154: channel_benchmark_sscx::coreneuron_cpu_filemode
 76/162 Test #152: channel_benchmark_sscx::coreneuron_gpu_filemode ....................   Passed   79.38 sec
        Start   1: testneuron
 77/162 Test   #1: testneuron .........................................................   Passed    0.12 sec
        Start   2: ringtest
 78/162 Test   #2: ringtest ...........................................................   Passed    0.72 sec
        Start   3: connect_dend
 79/162 Test   #3: connect_dend .......................................................   Passed    0.21 sec
        Start   4: pynrn_tests::basic_tests
 80/162 Test #111: testcorenrn_watch::neuron ..........................................   Passed    8.07 sec
        Start 113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate
 81/162 Test #148: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed   96.79 sec
        Start   5: rxdmod_tests::rxd_tests
 82/162 Test   #4: pynrn_tests::basic_tests ...........................................   Passed    9.02 sec
        Start   6: rxdmod_tests::rxd_mpi_tests
 83/162 Test #112: testcorenrn_watch::coreneuron_gpu_online ...........................   Passed   31.86 sec
        Start 114: testcorenrn_watch::coreneuron_gpu_offline
 84/162 Test #113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate ..........   Passed   28.06 sec
        Start 116: testcorenrn_watch::coreneuron_cpu_online
 85/162 Test #114: testcorenrn_watch::coreneuron_gpu_offline ..........................   Passed   16.71 sec
        Start 117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 86/162 Test #116: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed   14.32 sec
        Start 118: testcorenrn_watch::coreneuron_cpu_offline
 87/162 Test #153: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed   57.11 sec
        Start   7: parallel_tests
 88/162 Test #154: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed   51.82 sec
        Start   8: parallel_partrans
 89/162 Test   #8: parallel_partrans ..................................................   Passed    5.25 sec
        Start   9: parallel_bas
 90/162 Test #118: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed   12.92 sec
        Start 141: testcorenrn_netstimdirect::direct_netstimdirect
 91/162 Test   #7: parallel_tests .....................................................   Passed    9.05 sec
        Start  10: coreneuron_modtests::fornetcon_py_cpu
 92/162 Test #117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed   16.94 sec
        Start 142: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 93/162 Test   #9: parallel_bas .......................................................   Passed   10.55 sec
        Start  11: coreneuron_modtests::direct_py_cpu
 94/162 Test  #10: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed   13.22 sec
        Start  12: coreneuron_modtests::direct_hoc_cpu
 95/162 Test  #11: coreneuron_modtests::direct_py_cpu .................................   Passed    6.68 sec
        Start  13: coreneuron_modtests::spikes_py_cpu
 96/162 Test #141: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed   18.14 sec
        Start  14: coreneuron_modtests::spikes_file_mode_py_cpu
        Start  15: coreneuron_modtests::fast_imem_py_cpu
 97/162 Test #142: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   16.32 sec
        Start  16: coreneuron_modtests::datareturn_py_cpu
        Start  17: coreneuron_modtests::test_units_py_cpu
 98/162 Test  #15: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed    3.53 sec
        Start  18: coreneuron_modtests::test_netmove_py_cpu
 99/162 Test  #17: coreneuron_modtests::test_units_py_cpu .............................   Passed    5.97 sec
        Start  19: coreneuron_modtests::test_watchrange_py_cpu
100/162 Test  #14: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed    7.06 sec
        Start  20: coreneuron_modtests::test_psolve_py_cpu
101/162 Test  #12: coreneuron_modtests::direct_hoc_cpu ................................   Passed    9.51 sec
        Start  21: coreneuron_modtests::test_natrans_py_cpu
102/162 Test  #13: coreneuron_modtests::spikes_py_cpu .................................   Passed    9.63 sec
        Start  25: coreneuron_modtests::direct_py_gpu
103/162 Test  #16: coreneuron_modtests::datareturn_py_cpu .............................   Passed    9.29 sec
        Start  26: coreneuron_modtests::direct_hoc_gpu
104/162 Test  #21: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed    5.36 sec
        Start  27: coreneuron_modtests::spikes_py_gpu
105/162 Test  #19: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed    6.21 sec
        Start  28: coreneuron_modtests::spikes_file_mode_py_gpu
106/162 Test  #20: coreneuron_modtests::test_psolve_py_cpu ............................   Passed    6.09 sec
        Start  29: coreneuron_modtests::fast_imem_py_gpu
107/162 Test  #26: coreneuron_modtests::direct_hoc_gpu ................................   Passed    4.60 sec
        Start  30: coreneuron_modtests::datareturn_py_gpu
108/162 Test  #25: coreneuron_modtests::direct_py_gpu .................................   Passed    6.65 sec
        Start  31: coreneuron_modtests::test_units_py_gpu
109/162 Test  #29: coreneuron_modtests::fast_imem_py_gpu ..............................   Passed    2.53 sec
        Start  32: coreneuron_modtests::test_netmove_py_gpu
110/162 Test  #18: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   12.34 sec
        Start  33: coreneuron_modtests::test_watchrange_py_gpu
111/162 Test  #28: coreneuron_modtests::spikes_file_mode_py_gpu .......................   Passed    5.10 sec
        Start  34: coreneuron_modtests::test_psolve_py_gpu
112/162 Test  #31: coreneuron_modtests::test_units_py_gpu .............................   Passed    4.18 sec
        Start  35: coreneuron_modtests::test_natrans_py_gpu
113/162 Test  #27: coreneuron_modtests::spikes_py_gpu .................................   Passed    7.27 sec
        Start  39: external_nrntest
114/162 Test  #33: coreneuron_modtests::test_watchrange_py_gpu ........................   Passed    5.39 sec
        Start  64: testcorenrn_bbcore::compare_results
115/162 Test  #64: testcorenrn_bbcore::compare_results ................................   Passed    0.34 sec
        Start  74: testcorenrn_deriv::compare_results
116/162 Test  #74: testcorenrn_deriv::compare_results .................................   Passed    0.22 sec
        Start  84: testcorenrn_gf::compare_results
117/162 Test  #84: testcorenrn_gf::compare_results ....................................   Passed    0.19 sec
        Start  90: testcorenrn_patstim::compare_results
118/162 Test  #90: testcorenrn_patstim::compare_results ...............................   Passed    0.34 sec
        Start 100: testcorenrn_vecplay::compare_results
119/162 Test #100: testcorenrn_vecplay::compare_results ...............................   Passed    0.21 sec
        Start 120: testcorenrn_watch::compare_results
120/162 Test  #35: coreneuron_modtests::test_natrans_py_gpu ...........................   Passed    3.51 sec
        Start 130: testcorenrn_conc::compare_results
121/162 Test #120: testcorenrn_watch::compare_results .................................   Passed    0.33 sec
        Start 140: testcorenrn_kin::compare_results
122/162 Test  #34: coreneuron_modtests::test_psolve_py_gpu ............................   Passed    4.81 sec
        Start 143: testcorenrn_netstimdirect::compare_results
123/162 Test #130: testcorenrn_conc::compare_results ..................................   Passed    0.51 sec
        Start 149: channel_benchmark_hippo::compare_results
124/162 Test  #30: coreneuron_modtests::datareturn_py_gpu .............................   Passed    8.65 sec
        Start 155: channel_benchmark_sscx::compare_results
125/162 Test #140: testcorenrn_kin::compare_results ...................................   Passed    0.44 sec
126/162 Test #149: channel_benchmark_hippo::compare_results ...........................   Passed    0.30 sec
        Start  22: coreneuron_modtests::spikes_mpi_py_cpu
127/162 Test #143: testcorenrn_netstimdirect::compare_results .........................   Passed    0.57 sec
128/162 Test #155: channel_benchmark_sscx::compare_results ............................   Passed    0.37 sec
        Start  23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
129/162 Test  #32: coreneuron_modtests::test_netmove_py_gpu ...........................   Passed    9.57 sec
130/162 Test  #22: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed    9.51 sec
        Start  24: coreneuron_modtests::inputpresyn_py_cpu
131/162 Test  #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed    9.61 sec
        Start  36: coreneuron_modtests::spikes_mpi_py_gpu
132/162 Test  #36: coreneuron_modtests::spikes_mpi_py_gpu .............................   Passed   21.64 sec
        Start  37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu
133/162 Test  #24: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed   22.53 sec
        Start  38: coreneuron_modtests::inputpresyn_py_gpu
134/162 Test  #38: coreneuron_modtests::inputpresyn_py_gpu ............................   Passed   29.49 sec
135/162 Test  #37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ...................   Passed   30.18 sec
        Start 105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation
136/162 Test #105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation ..........   Passed    2.67 sec
        Start 109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
137/162 Test #109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    2.46 sec
        Start 157: olfactory-bulb-3d::neuron::preparation
138/162 Test #157: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.02 sec
        Start 159: olfactory-bulb-3d::coreneuron_gpu_online::preparation
139/162 Test #159: olfactory-bulb-3d::coreneuron_gpu_online::preparation ..............   Passed    0.02 sec
        Start 161: olfactory-bulb-3d::coreneuron_cpu_online::preparation
140/162 Test #161: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.02 sec
        Start  40: reduced_dentate::neuron
141/162 Test  #39: external_nrntest ...................................................   Passed  101.89 sec
142/162 Test  #40: reduced_dentate::neuron ............................................   Passed   31.91 sec
        Start  41: reduced_dentate::coreneuron_cpu
143/162 Test  #41: reduced_dentate::coreneuron_cpu ....................................   Passed   37.51 sec
        Start  42: reduced_dentate::coreneuron_gpu
144/162 Test   #5: rxdmod_tests::rxd_tests ............................................   Passed  235.58 sec
145/162 Test  #42: reduced_dentate::coreneuron_gpu ....................................   Passed   37.38 sec
        Start  49: external_ringtest::coreneuron_cpu_mpi_threads
        Start  43: reduced_dentate::compare_results
146/162 Test  #43: reduced_dentate::compare_results ...................................   Passed    0.06 sec
147/162 Test  #49: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed   15.77 sec
        Start  53: external_ringtest::coreneuron_gpu_mpi_threads
148/162 Test  #53: external_ringtest::coreneuron_gpu_mpi_threads ......................   Passed   21.45 sec
        Start 101: testcorenrn_vecevent::neuron
        Start  54: external_ringtest::compare_results
149/162 Test  #54: external_ringtest::compare_results .................................   Passed    0.07 sec
150/162 Test #101: testcorenrn_vecevent::neuron .......................................   Passed    2.24 sec
        Start 102: testcorenrn_vecevent::coreneuron_gpu_online
151/162 Test   #6: rxdmod_tests::rxd_mpi_tests ........................................   Passed  303.29 sec
        Start 103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate
152/162 Test #102: testcorenrn_vecevent::coreneuron_gpu_online ........................   Passed    8.99 sec
        Start 104: testcorenrn_vecevent::coreneuron_gpu_offline
153/162 Test #103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate .......   Passed    8.78 sec
        Start 106: testcorenrn_vecevent::coreneuron_cpu_online
154/162 Test #106: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed    8.27 sec
        Start 107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
155/162 Test #104: testcorenrn_vecevent::coreneuron_gpu_offline .......................   Passed    9.90 sec
        Start 108: testcorenrn_vecevent::coreneuron_cpu_offline
156/162 Test #108: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed    8.68 sec
        Start 156: olfactory-bulb-3d::neuron
157/162 Test #107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed   10.24 sec
        Start 158: olfactory-bulb-3d::coreneuron_gpu_online
158/162 Test #158: olfactory-bulb-3d::coreneuron_gpu_online ...........................   Passed   71.29 sec
        Start 160: olfactory-bulb-3d::coreneuron_cpu_online
159/162 Test #156: olfactory-bulb-3d::neuron ..........................................   Passed  103.58 sec
        Start 110: testcorenrn_vecevent::compare_results
160/162 Test #110: testcorenrn_vecevent::compare_results ..............................   Passed    0.08 sec
161/162 Test #160: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed   54.36 sec
        Start 162: olfactory-bulb-3d::compare_results
162/162 Test #162: olfactory-bulb-3d::compare_results .................................   Passed    0.23 sec

100% tests passed, 0 tests failed out of 162

Total Test time (real) = 685.45 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640248421:step_script
[0Ksection_start:1640248421:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=18450 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114633 responseStatus[0;m=201 Created token[0;m=DNRw9ySf
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=18482 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114633 responseStatus[0;m=201 Created token[0;m=DNRw9ySf
section_end:1640248422:upload_artifacts_on_success
[0Ksection_start:1640248422:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640248423:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640248006:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640248006:resolve_secrets
[0Ksection_start:1640248006:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor261193834, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114630
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114630, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114630_PROD_P112_CP4_C4
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144502
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114630_PROD_P112_CP4_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114630 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114630 --ntasks=8 --jobid=144502 --cpus-per-task=1 --mem=30750M
section_end:1640248008:prepare_executor
[0Ksection_start:1640248008:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i5n30 via bbpv1.epfl.ch...
section_end:1640248010:prepare_script
[0Ksection_start:1640248010:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640248011:get_sources
[0Ksection_start:1640248011:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron:intel (114625)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=110082 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114625 responseStatus[0;m=200 OK token[0;m=XVeLVHSr
section_end:1640248012:download_artifacts
[0Ksection_start:1640248012:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-icpc
Create new tag: 20211223-0827 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114625/_/spack-build/spack-stage-neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm/spack-build-mvn7s3z
        Start  33: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  46: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start  52: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start  56: testcorenrn_patstim::coreneuron_cpu_offline::preparation
  1/103 Test  #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    2.96 sec
        Start  80: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/103 Test  #46: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    3.40 sec
        Start  86: testcorenrn_kin::coreneuron_cpu_offline::preparation
  3/103 Test  #52: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    3.59 sec
        Start  62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
  4/103 Test  #56: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    3.63 sec
        Start  74: testcorenrn_watch::coreneuron_cpu_offline::preparation
  5/103 Test  #33: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed    4.23 sec
        Start  29: external_ringtest::neuron
        Start  36: testcorenrn_bbcore::neuron
  6/103 Test  #80: testcorenrn_conc::coreneuron_cpu_offline::preparation ..............   Passed    1.67 sec
        Start  37: testcorenrn_bbcore::coreneuron_cpu_online
  7/103 Test  #86: testcorenrn_kin::coreneuron_cpu_offline::preparation ...............   Passed    1.85 sec
        Start  38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
  8/103 Test  #62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    2.41 sec
        Start  30: external_ringtest::neuron_mpi
  9/103 Test  #74: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    2.61 sec
        Start  31: external_ringtest::coreneuron_cpu_mpi
 10/103 Test  #36: testcorenrn_bbcore::neuron .........................................   Passed    2.16 sec
        Start  39: testcorenrn_bbcore::coreneuron_cpu_offline
 11/103 Test  #37: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    2.49 sec
        Start  42: testcorenrn_deriv::neuron
 12/103 Test  #29: external_ringtest::neuron ..........................................   Passed    3.01 sec
        Start  43: testcorenrn_deriv::coreneuron_cpu_online
 13/103 Test  #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    2.65 sec
        Start  44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 14/103 Test  #39: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    1.89 sec
        Start  45: testcorenrn_deriv::coreneuron_cpu_offline
 15/103 Test  #30: external_ringtest::neuron_mpi ......................................   Passed    4.17 sec
        Start  32: external_ringtest::coreneuron_cpu_mpi_offline
 16/103 Test  #45: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed    2.46 sec
        Start  76: testcorenrn_conc::neuron
 17/103 Test  #42: testcorenrn_deriv::neuron ..........................................   Passed    4.01 sec
        Start  77: testcorenrn_conc::coreneuron_cpu_online
 18/103 Test  #31: external_ringtest::coreneuron_cpu_mpi ..............................   Passed    5.64 sec
        Start  48: testcorenrn_gf::neuron
 19/103 Test  #43: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed    4.94 sec
        Start  78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 20/103 Test  #44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed    5.69 sec
        Start  79: testcorenrn_conc::coreneuron_cpu_offline
 21/103 Test  #76: testcorenrn_conc::neuron ...........................................   Passed    2.87 sec
        Start  82: testcorenrn_kin::neuron
 22/103 Test  #32: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed    3.52 sec
        Start  49: testcorenrn_gf::coreneuron_cpu_online
 23/103 Test  #77: testcorenrn_conc::coreneuron_cpu_online ............................   Passed    3.89 sec
        Start  83: testcorenrn_kin::coreneuron_cpu_online
 24/103 Test  #48: testcorenrn_gf::neuron .............................................   Passed    3.42 sec
        Start  50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 25/103 Test  #79: testcorenrn_conc::coreneuron_cpu_offline ...........................   Passed    1.77 sec
        Start  84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 26/103 Test  #78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ...........   Passed    4.32 sec
        Start  85: testcorenrn_kin::coreneuron_cpu_offline
 27/103 Test  #82: testcorenrn_kin::neuron ............................................   Passed    2.96 sec
        Start  91: channel_benchmark_hippo::neuron
 28/103 Test  #85: testcorenrn_kin::coreneuron_cpu_offline ............................   Passed    1.99 sec
        Start  92: channel_benchmark_hippo::coreneuron_cpu_online
 29/103 Test  #83: testcorenrn_kin::coreneuron_cpu_online .............................   Passed    4.81 sec
        Start  93: channel_benchmark_hippo::coreneuron_cpu_filemode
 30/103 Test  #49: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed    6.40 sec
        Start  51: testcorenrn_gf::coreneuron_cpu_offline
 31/103 Test  #84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............   Passed    5.38 sec
        Start  95: channel_benchmark_sscx::neuron
 32/103 Test  #51: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed    5.80 sec
        Start  54: testcorenrn_patstim::neuron
 33/103 Test  #54: testcorenrn_patstim::neuron ........................................   Passed    5.27 sec
        Start  55: testcorenrn_patstim::coreneuron_cpu_offline
 34/103 Test  #55: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed    3.96 sec
        Start  58: testcorenrn_vecplay::neuron
 35/103 Test  #50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   20.39 sec
        Start  59: testcorenrn_vecplay::coreneuron_cpu_online
 36/103 Test  #58: testcorenrn_vecplay::neuron ........................................   Passed    3.36 sec
        Start  60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 37/103 Test  #59: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed    6.74 sec
        Start  61: testcorenrn_vecplay::coreneuron_cpu_offline
 38/103 Test  #61: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed    4.03 sec
        Start  70: testcorenrn_watch::neuron
 39/103 Test  #60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   13.54 sec
        Start  71: testcorenrn_watch::coreneuron_cpu_online
 40/103 Test  #70: testcorenrn_watch::neuron ..........................................   Passed    6.16 sec
        Start  72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 41/103 Test  #91: channel_benchmark_hippo::neuron ....................................   Passed   98.98 sec
        Start  96: channel_benchmark_sscx::coreneuron_cpu_online
 42/103 Test  #95: channel_benchmark_sscx::neuron .....................................   Passed   99.23 sec
        Start  97: channel_benchmark_sscx::coreneuron_cpu_filemode
 43/103 Test  #92: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed  102.83 sec
        Start   1: testneuron
 44/103 Test   #1: testneuron .........................................................   Passed    0.47 sec
        Start   2: ringtest
 45/103 Test  #93: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed  102.19 sec
        Start   3: connect_dend
 46/103 Test   #3: connect_dend .......................................................   Passed    1.47 sec
        Start   4: pynrn_tests::basic_tests
 47/103 Test   #2: ringtest ...........................................................   Passed    2.06 sec
        Start   5: rxdmod_tests::rxd_tests
 48/103 Test  #96: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed   62.23 sec
        Start   6: rxdmod_tests::rxd_mpi_tests
 49/103 Test  #97: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed   63.75 sec
        Start   7: parallel_tests
 50/103 Test  #71: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed  137.18 sec
        Start  73: testcorenrn_watch::coreneuron_cpu_offline
 51/103 Test  #72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed  138.49 sec
        Start  88: testcorenrn_netstimdirect::direct_netstimdirect
 52/103 Test  #73: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed    3.09 sec
        Start  89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 53/103 Test   #7: parallel_tests .....................................................   Passed    9.32 sec
        Start   8: parallel_partrans
 54/103 Test  #88: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed    8.27 sec
        Start   9: parallel_bas
        Start  10: coreneuron_modtests::fornetcon_py_cpu
 55/103 Test   #4: pynrn_tests::basic_tests ...........................................   Passed   80.21 sec
        Start  11: coreneuron_modtests::direct_py_cpu
 56/103 Test  #89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   12.85 sec
        Start  12: coreneuron_modtests::direct_hoc_cpu
        Start  13: coreneuron_modtests::spikes_py_cpu
 57/103 Test   #8: parallel_partrans ..................................................   Passed   12.51 sec
        Start  14: coreneuron_modtests::spikes_file_mode_py_cpu
 58/103 Test  #12: coreneuron_modtests::direct_hoc_cpu ................................   Passed    3.99 sec
        Start  15: coreneuron_modtests::fast_imem_py_cpu
 59/103 Test   #9: parallel_bas .......................................................   Passed   16.31 sec
        Start  16: coreneuron_modtests::datareturn_py_cpu
 60/103 Test  #11: coreneuron_modtests::direct_py_cpu .................................   Passed   12.96 sec
        Start  17: coreneuron_modtests::test_units_py_cpu
 61/103 Test  #10: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed   17.86 sec
        Start  18: coreneuron_modtests::test_netmove_py_cpu
 62/103 Test  #14: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed   15.77 sec
        Start  19: coreneuron_modtests::test_watchrange_py_cpu
 63/103 Test  #13: coreneuron_modtests::spikes_py_cpu .................................   Passed   17.82 sec
        Start  20: coreneuron_modtests::test_psolve_py_cpu
 64/103 Test  #15: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed   18.01 sec
        Start  21: coreneuron_modtests::test_natrans_py_cpu
 65/103 Test  #16: coreneuron_modtests::datareturn_py_cpu .............................   Passed   17.82 sec
        Start  25: external_nrntest
 66/103 Test  #18: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   16.52 sec
        Start  41: testcorenrn_bbcore::compare_results
 67/103 Test  #17: coreneuron_modtests::test_units_py_cpu .............................   Passed   18.69 sec
        Start  47: testcorenrn_deriv::compare_results
 68/103 Test  #41: testcorenrn_bbcore::compare_results ................................   Passed    1.79 sec
        Start  53: testcorenrn_gf::compare_results
 69/103 Test  #47: testcorenrn_deriv::compare_results .................................   Passed    1.09 sec
        Start  57: testcorenrn_patstim::compare_results
 70/103 Test  #53: testcorenrn_gf::compare_results ....................................   Passed    2.08 sec
        Start  63: testcorenrn_vecplay::compare_results
 71/103 Test  #57: testcorenrn_patstim::compare_results ...............................   Passed    1.33 sec
        Start  75: testcorenrn_watch::compare_results
 72/103 Test  #19: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed   16.77 sec
        Start  81: testcorenrn_conc::compare_results
 73/103 Test  #75: testcorenrn_watch::compare_results .................................   Passed    0.62 sec
        Start  87: testcorenrn_kin::compare_results
 74/103 Test  #63: testcorenrn_vecplay::compare_results ...............................   Passed    1.01 sec
        Start  90: testcorenrn_netstimdirect::compare_results
 75/103 Test  #81: testcorenrn_conc::compare_results ..................................   Passed    1.16 sec
        Start  94: channel_benchmark_hippo::compare_results
 76/103 Test  #87: testcorenrn_kin::compare_results ...................................   Passed    1.03 sec
        Start  98: channel_benchmark_sscx::compare_results
 77/103 Test  #20: coreneuron_modtests::test_psolve_py_cpu ............................   Passed   17.18 sec
 78/103 Test  #90: testcorenrn_netstimdirect::compare_results .........................   Passed    1.31 sec
        Start  22: coreneuron_modtests::spikes_mpi_py_cpu
 79/103 Test  #94: channel_benchmark_hippo::compare_results ...........................   Passed    1.02 sec
 80/103 Test  #98: channel_benchmark_sscx::compare_results ............................   Passed    0.80 sec
        Start  23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
 81/103 Test  #21: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed   21.48 sec
 82/103 Test  #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed   10.88 sec
        Start  24: coreneuron_modtests::inputpresyn_py_cpu
 83/103 Test  #22: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed   11.32 sec
 84/103 Test  #24: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed    6.85 sec
        Start  68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
 85/103 Test  #68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    4.19 sec
        Start 100: olfactory-bulb-3d::neuron::preparation
 86/103 Test #100: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.06 sec
        Start 102: olfactory-bulb-3d::coreneuron_cpu_online::preparation
 87/103 Test #102: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.13 sec
        Start  26: reduced_dentate::neuron
 88/103 Test  #26: reduced_dentate::neuron ............................................   Passed   10.55 sec
        Start  27: reduced_dentate::coreneuron_cpu
 89/103 Test  #27: reduced_dentate::coreneuron_cpu ....................................   Passed   17.30 sec
        Start  64: testcorenrn_vecevent::neuron
        Start  28: reduced_dentate::compare_results
 90/103 Test  #28: reduced_dentate::compare_results ...................................   Passed    1.12 sec
 91/103 Test  #64: testcorenrn_vecevent::neuron .......................................   Passed    6.67 sec
        Start  65: testcorenrn_vecevent::coreneuron_cpu_online
 92/103 Test  #65: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed   30.42 sec
        Start  66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
 93/103 Test  #66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed   22.71 sec
        Start  67: testcorenrn_vecevent::coreneuron_cpu_offline
 94/103 Test  #67: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed    6.12 sec
        Start  99: olfactory-bulb-3d::neuron
        Start  69: testcorenrn_vecevent::compare_results
 95/103 Test  #69: testcorenrn_vecevent::compare_results ..............................   Passed    0.71 sec
 96/103 Test  #99: olfactory-bulb-3d::neuron ..........................................   Passed   67.94 sec
        Start 101: olfactory-bulb-3d::coreneuron_cpu_online
 97/103 Test   #5: rxdmod_tests::rxd_tests ............................................   Passed  323.42 sec
 98/103 Test #101: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed   58.55 sec
        Start  34: external_ringtest::coreneuron_cpu_mpi_threads
 99/103 Test  #34: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed   11.96 sec
        Start  35: external_ringtest::compare_results
        Start 103: olfactory-bulb-3d::compare_results
100/103 Test  #35: external_ringtest::compare_results .................................   Passed    1.01 sec
101/103 Test #103: olfactory-bulb-3d::compare_results .................................   Passed    1.08 sec
102/103 Test   #6: rxdmod_tests::rxd_mpi_tests ........................................   Passed  394.02 sec
103/103 Test  #25: external_nrntest ...................................................   Passed  565.45 sec

100% tests passed, 0 tests failed out of 103

Total Test time (real) = 799.21 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640248859:step_script
[0Ksection_start:1640248859:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=132010 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114630 responseStatus[0;m=201 Created token[0;m=VQqCE9PN
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=132058 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114630 responseStatus[0;m=201 Created token[0;m=VQqCE9PN
section_end:1640248861:upload_artifacts_on_success
[0Ksection_start:1640248861:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640248862:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-nmodl-gpu.txt
Log was not fetched because job had status: skipped

## test-neuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1640250356:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1640250356:resolve_secrets
[0Ksection_start:1640250356:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor228408497, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114629
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114629, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J114629_PROD_P112_CP3_C3
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 144588
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J114629_PROD_P112_CP3_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114629 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114629 --ntasks=8 --jobid=144588 --cpus-per-task=1 --mem=30750M
section_end:1640250357:prepare_executor
[0Ksection_start:1640250357:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1640250360:prepare_script
[0Ksection_start:1640250360:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1640250361:get_sources
[0Ksection_start:1640250361:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron+nmodl:intel (114624)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=287861 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=114624 responseStatus[0;m=200 OK token[0;m=3GcEwyxJ
section_end:1640250363:download_artifacts
[0Ksection_start:1640250363:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i5n30
   Build name: Linux-icpc
Create new tag: 20211223-0907 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114624/_/spack-build/spack-stage-neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev/spack-build-jhigcl7
        Start  33: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  46: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start  52: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start  56: testcorenrn_patstim::coreneuron_cpu_offline::preparation
  1/103 Test  #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    5.77 sec
        Start  80: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/103 Test  #46: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    7.05 sec
        Start  86: testcorenrn_kin::coreneuron_cpu_offline::preparation
  3/103 Test  #56: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    8.04 sec
        Start  62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
  4/103 Test  #52: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    8.65 sec
        Start  74: testcorenrn_watch::coreneuron_cpu_offline::preparation
  5/103 Test  #80: testcorenrn_conc::coreneuron_cpu_offline::preparation ..............   Passed    7.11 sec
        Start  29: external_ringtest::neuron
  6/103 Test  #33: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed   13.29 sec
        Start  30: external_ringtest::neuron_mpi
  7/103 Test  #86: testcorenrn_kin::coreneuron_cpu_offline::preparation ...............   Passed    6.46 sec
        Start  36: testcorenrn_bbcore::neuron
  8/103 Test  #62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    6.09 sec
        Start  31: external_ringtest::coreneuron_cpu_mpi
  9/103 Test  #74: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    6.31 sec
        Start  32: external_ringtest::coreneuron_cpu_mpi_offline
 10/103 Test  #36: testcorenrn_bbcore::neuron .........................................   Passed    3.83 sec
        Start  37: testcorenrn_bbcore::coreneuron_cpu_online
 11/103 Test  #32: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed    4.22 sec
        Start  38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
        Start  39: testcorenrn_bbcore::coreneuron_cpu_offline
 12/103 Test  #29: external_ringtest::neuron ..........................................   Passed    8.34 sec
        Start  42: testcorenrn_deriv::neuron
 13/103 Test  #30: external_ringtest::neuron_mpi ......................................   Passed    8.55 sec
        Start  43: testcorenrn_deriv::coreneuron_cpu_online
        Start  44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 14/103 Test  #39: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    3.62 sec
        Start  45: testcorenrn_deriv::coreneuron_cpu_offline
 15/103 Test  #31: external_ringtest::coreneuron_cpu_mpi ..............................   Passed   10.89 sec
        Start  48: testcorenrn_gf::neuron
 16/103 Test  #37: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    8.15 sec
        Start  76: testcorenrn_conc::neuron
 17/103 Test  #42: testcorenrn_deriv::neuron ..........................................   Passed    4.46 sec
        Start  77: testcorenrn_conc::coreneuron_cpu_online
 18/103 Test  #45: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed    4.27 sec
        Start  78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 19/103 Test  #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    8.11 sec
        Start  79: testcorenrn_conc::coreneuron_cpu_offline
 20/103 Test  #43: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed    6.65 sec
        Start  82: testcorenrn_kin::neuron
 21/103 Test  #44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed    7.51 sec
        Start  83: testcorenrn_kin::coreneuron_cpu_online
 22/103 Test  #79: testcorenrn_conc::coreneuron_cpu_offline ...........................   Passed    4.83 sec
        Start  84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 23/103 Test  #76: testcorenrn_conc::neuron ...........................................   Passed    6.61 sec
        Start  85: testcorenrn_kin::coreneuron_cpu_offline
 24/103 Test  #48: testcorenrn_gf::neuron .............................................   Passed    7.41 sec
        Start  49: testcorenrn_gf::coreneuron_cpu_online
 25/103 Test  #77: testcorenrn_conc::coreneuron_cpu_online ............................   Passed    7.71 sec
        Start  91: channel_benchmark_hippo::neuron
 26/103 Test  #78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ...........   Passed    7.57 sec
        Start  92: channel_benchmark_hippo::coreneuron_cpu_online
 27/103 Test  #82: testcorenrn_kin::neuron ............................................   Passed    6.71 sec
        Start  93: channel_benchmark_hippo::coreneuron_cpu_filemode
 28/103 Test  #85: testcorenrn_kin::coreneuron_cpu_offline ............................   Passed    4.14 sec
        Start  95: channel_benchmark_sscx::neuron
 29/103 Test  #83: testcorenrn_kin::coreneuron_cpu_online .............................   Passed   12.43 sec
        Start  96: channel_benchmark_sscx::coreneuron_cpu_online
 30/103 Test  #84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............   Passed   17.06 sec
        Start  97: channel_benchmark_sscx::coreneuron_cpu_filemode
 31/103 Test  #49: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed   24.00 sec
        Start  50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 32/103 Test  #50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   34.35 sec
        Start  51: testcorenrn_gf::coreneuron_cpu_offline
 33/103 Test  #51: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed    7.16 sec
        Start  54: testcorenrn_patstim::neuron
 34/103 Test  #54: testcorenrn_patstim::neuron ........................................   Passed    3.68 sec
        Start  55: testcorenrn_patstim::coreneuron_cpu_offline
 35/103 Test  #55: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed    2.47 sec
        Start  58: testcorenrn_vecplay::neuron
 36/103 Test  #58: testcorenrn_vecplay::neuron ........................................   Passed    3.84 sec
        Start  59: testcorenrn_vecplay::coreneuron_cpu_online
 37/103 Test  #59: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed    7.88 sec
        Start  60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 38/103 Test  #60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   13.64 sec
        Start  61: testcorenrn_vecplay::coreneuron_cpu_offline
 39/103 Test  #61: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed    2.54 sec
        Start  70: testcorenrn_watch::neuron
 40/103 Test  #70: testcorenrn_watch::neuron ..........................................   Passed    3.78 sec
        Start  71: testcorenrn_watch::coreneuron_cpu_online
 41/103 Test  #71: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed    7.86 sec
        Start  72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 42/103 Test  #72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed   13.99 sec
        Start  73: testcorenrn_watch::coreneuron_cpu_offline
 43/103 Test  #73: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed    2.45 sec
        Start  88: testcorenrn_netstimdirect::direct_netstimdirect
 44/103 Test  #88: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed    8.28 sec
        Start  89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 45/103 Test  #91: channel_benchmark_hippo::neuron ....................................   Passed  140.04 sec
        Start   1: testneuron
 46/103 Test   #1: testneuron .........................................................   Passed    0.09 sec
        Start   2: ringtest
 47/103 Test   #2: ringtest ...........................................................   Passed    0.39 sec
        Start   3: connect_dend
 48/103 Test   #3: connect_dend .......................................................   Passed    0.21 sec
        Start   4: pynrn_tests::basic_tests
 49/103 Test  #93: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed  144.99 sec
        Start   5: rxdmod_tests::rxd_tests
 50/103 Test   #4: pynrn_tests::basic_tests ...........................................   Passed    6.05 sec
        Start   6: rxdmod_tests::rxd_mpi_tests
 51/103 Test  #89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   12.93 sec
        Start   7: parallel_tests
        Start   8: parallel_partrans
 52/103 Test  #92: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed  152.21 sec
        Start   9: parallel_bas
 53/103 Test   #8: parallel_partrans ..................................................   Passed   10.60 sec
        Start  10: coreneuron_modtests::fornetcon_py_cpu
 54/103 Test  #96: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed  153.60 sec
        Start  11: coreneuron_modtests::direct_py_cpu
 55/103 Test  #97: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed  147.63 sec
        Start  12: coreneuron_modtests::direct_hoc_cpu
 56/103 Test   #7: parallel_tests .....................................................   Passed   16.39 sec
        Start  13: coreneuron_modtests::spikes_py_cpu
 57/103 Test  #95: channel_benchmark_sscx::neuron .....................................   Passed  161.36 sec
        Start  14: coreneuron_modtests::spikes_file_mode_py_cpu
 58/103 Test  #12: coreneuron_modtests::direct_hoc_cpu ................................   Passed    2.77 sec
        Start  15: coreneuron_modtests::fast_imem_py_cpu
 59/103 Test  #10: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed    9.65 sec
        Start  16: coreneuron_modtests::datareturn_py_cpu
 60/103 Test  #11: coreneuron_modtests::direct_py_cpu .................................   Passed    8.01 sec
        Start  17: coreneuron_modtests::test_units_py_cpu
 61/103 Test   #9: parallel_bas .......................................................   Passed   21.38 sec
        Start  18: coreneuron_modtests::test_netmove_py_cpu
 62/103 Test  #13: coreneuron_modtests::spikes_py_cpu .................................   Passed   13.89 sec
        Start  19: coreneuron_modtests::test_watchrange_py_cpu
 63/103 Test  #14: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed   15.93 sec
        Start  20: coreneuron_modtests::test_psolve_py_cpu
 64/103 Test  #15: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed   16.69 sec
        Start  21: coreneuron_modtests::test_natrans_py_cpu
 65/103 Test  #17: coreneuron_modtests::test_units_py_cpu .............................   Passed   15.16 sec
        Start  25: external_nrntest
 66/103 Test  #16: coreneuron_modtests::datareturn_py_cpu .............................   Passed   18.50 sec
        Start  41: testcorenrn_bbcore::compare_results
 67/103 Test  #41: testcorenrn_bbcore::compare_results ................................   Passed    1.17 sec
        Start  47: testcorenrn_deriv::compare_results
 68/103 Test  #19: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed   10.84 sec
        Start  53: testcorenrn_gf::compare_results
 69/103 Test  #47: testcorenrn_deriv::compare_results .................................   Passed    1.37 sec
        Start  57: testcorenrn_patstim::compare_results
 70/103 Test  #57: testcorenrn_patstim::compare_results ...............................   Passed    0.34 sec
        Start  63: testcorenrn_vecplay::compare_results
 71/103 Test  #53: testcorenrn_gf::compare_results ....................................   Passed    0.74 sec
        Start  75: testcorenrn_watch::compare_results
 72/103 Test  #63: testcorenrn_vecplay::compare_results ...............................   Passed    0.42 sec
        Start  81: testcorenrn_conc::compare_results
 73/103 Test  #75: testcorenrn_watch::compare_results .................................   Passed    0.58 sec
        Start  87: testcorenrn_kin::compare_results
 74/103 Test  #81: testcorenrn_conc::compare_results ..................................   Passed    0.96 sec
        Start  90: testcorenrn_netstimdirect::compare_results
 75/103 Test  #20: coreneuron_modtests::test_psolve_py_cpu ............................   Passed   10.75 sec
        Start  94: channel_benchmark_hippo::compare_results
 76/103 Test  #18: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   16.45 sec
        Start  98: channel_benchmark_sscx::compare_results
 77/103 Test  #87: testcorenrn_kin::compare_results ...................................   Passed    1.62 sec
 78/103 Test  #90: testcorenrn_netstimdirect::compare_results .........................   Passed    1.18 sec
        Start  22: coreneuron_modtests::spikes_mpi_py_cpu
 79/103 Test  #21: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed    9.31 sec
 80/103 Test  #98: channel_benchmark_sscx::compare_results ............................   Passed    0.85 sec
        Start  23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
 81/103 Test  #94: channel_benchmark_hippo::compare_results ...........................   Passed    1.20 sec
 82/103 Test  #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed    6.54 sec
        Start  24: coreneuron_modtests::inputpresyn_py_cpu
 83/103 Test  #22: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed    7.17 sec
 84/103 Test  #24: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed    2.50 sec
        Start  68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
 85/103 Test  #68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    4.17 sec
        Start 100: olfactory-bulb-3d::neuron::preparation
 86/103 Test #100: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.03 sec
        Start 102: olfactory-bulb-3d::coreneuron_cpu_online::preparation
 87/103 Test #102: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.03 sec
        Start  26: reduced_dentate::neuron
 88/103 Test  #26: reduced_dentate::neuron ............................................   Passed   14.28 sec
        Start  27: reduced_dentate::coreneuron_cpu
 89/103 Test   #5: rxdmod_tests::rxd_tests ............................................   Passed  106.38 sec
 90/103 Test  #27: reduced_dentate::coreneuron_cpu ....................................   Passed   47.19 sec
        Start  34: external_ringtest::coreneuron_cpu_mpi_threads
 91/103 Test  #34: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed    3.11 sec
        Start  64: testcorenrn_vecevent::neuron
        Start  28: reduced_dentate::compare_results
        Start  35: external_ringtest::compare_results
 92/103 Test  #35: external_ringtest::compare_results .................................   Passed    0.10 sec
 93/103 Test  #28: reduced_dentate::compare_results ...................................   Passed    0.11 sec
 94/103 Test  #64: testcorenrn_vecevent::neuron .......................................   Passed    2.32 sec
        Start  65: testcorenrn_vecevent::coreneuron_cpu_online
 95/103 Test  #65: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed    2.95 sec
        Start  66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
 96/103 Test  #66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed    4.25 sec
        Start  67: testcorenrn_vecevent::coreneuron_cpu_offline
 97/103 Test  #67: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed    1.77 sec
        Start  99: olfactory-bulb-3d::neuron
        Start  69: testcorenrn_vecevent::compare_results
 98/103 Test  #69: testcorenrn_vecevent::compare_results ..............................   Passed    0.11 sec
 99/103 Test   #6: rxdmod_tests::rxd_mpi_tests ........................................   Passed  175.10 sec
100/103 Test  #25: external_nrntest ...................................................   Passed  153.07 sec
        Start 101: olfactory-bulb-3d::coreneuron_cpu_online
101/103 Test  #99: olfactory-bulb-3d::neuron ..........................................   Passed   72.54 sec
102/103 Test #101: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed   50.94 sec
        Start 103: olfactory-bulb-3d::compare_results
103/103 Test #103: olfactory-bulb-3d::compare_results .................................   Passed    0.21 sec

100% tests passed, 0 tests failed out of 103

Total Test time (real) = 422.97 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.8.3
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1640250890:step_script
[0Ksection_start:1640250890:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=300092 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=114629 responseStatus[0;m=201 Created token[0;m=kSYAJ_Yt
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=300125 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=114629 responseStatus[0;m=201 Created token[0;m=kSYAJ_Yt
section_end:1640250891:upload_artifacts_on_success
[0Ksection_start:1640250891:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1640250891:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-nmodl-openmp-gpu.txt
Log was not fetched because job had status: skipped
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1640245858:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1640245858:resolve_secrets [0Ksection_start:1640245858:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor629993890, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114623
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114623, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J114623_PROD_P112_CP3_C3
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	Submitted batch job 144407
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J114623_PROD_P112_CP3_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114623 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114623 --ntasks=8 --jobid=144407 --cpus-per-task=1 --mem=30750M
	section_end:1640245859:prepare_executor [0Ksection_start:1640245859:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch...
	section_end:1640245860:prepare_script [0Ksection_start:1640245860:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1640245861:get_sources [0Ksection_start:1640245861:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:gpu (114618)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=75610 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=114618 responseStatus[0;m=200 OK token[0;m=QZYD5PL_
	section_end:1640245862:download_artifacts [0Ksection_start:1640245862:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i5n30
	Build name: Linux-nvc++
	Create new tag: 20211223-0751 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114618/_/spack-build/spack-stage-coreneuron-develop-d4mbc44tzlxvfyp7iy3jomhrptr7oxvo/spack-build-d4mbc44
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	1/18 Test #2: interleave_info_constructor_test ....... Passed 3.16 sec
	Start 7: ring_binqueue_TEST
	2/18 Test #1: cmd_interface_test ..................... Passed 3.18 sec
	3/18 Test #3: alignment_test ......................... Passed 3.46 sec
	Start 8: ring_multisend_TEST
	4/18 Test #5: lfp_test ............................... Passed 3.47 sec
	5/18 Test #4: queuing_test ........................... Passed 3.66 sec
	Start 9: ring_spike_buffer_TEST
	6/18 Test #6: ring_TEST .............................. Passed 4.80 sec
	Start 10: ring_permute1_TEST
	7/18 Test #7: ring_binqueue_TEST ..................... Passed 5.95 sec
	Start 11: ring_permute2_TEST
	8/18 Test #8: ring_multisend_TEST .................... Passed 8.81 sec
	Start 12: ring_gap_TEST
	9/18 Test #9: ring_spike_buffer_TEST ................. Passed 8.89 sec
	Start 13: ring_gap_binqueue_TEST
	10/18 Test #10: ring_permute1_TEST ..................... Passed 8.38 sec
	Start 14: ring_gap_multisend_TEST
	11/18 Test #11: ring_permute2_TEST ..................... Passed 6.82 sec
	Start 15: ring_gap_permute1_TEST
	12/18 Test #12: ring_gap_TEST .......................... Passed 9.01 sec
	Start 16: ring_gap_permute2_TEST
	13/18 Test #13: ring_gap_binqueue_TEST ................. Passed 8.87 sec
	Start 17: ring_permute2_cudaInterface_TEST
	14/18 Test #14: ring_gap_multisend_TEST ................ Passed 8.58 sec
	Start 18: ring_gap_permute2_cudaInterface_TEST
	15/18 Test #15: ring_gap_permute1_TEST ................. Passed 10.31 sec
	16/18 Test #16: ring_gap_permute2_TEST ................. Passed 7.42 sec
	17/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 7.41 sec
	18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 9.07 sec

	100% tests passed, 0 tests failed out of 18

	Total Test time (real) = 30.87 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.8.3
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1640245935:step_script [0Ksection_start:1640245935:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77267 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=114623 responseStatus[0;m=201 Created token[0;m=my2Tyyfu
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=77298 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=114623 responseStatus[0;m=201 Created token[0;m=my2Tyyfu
	section_end:1640245936:upload_artifacts_on_success [0Ksection_start:1640245936:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1640245936:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1640245837:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1640245837:resolve_secrets [0Ksection_start:1640245837:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor284334883, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114620
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114620, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J114620_PROD_P112_CP2_C2
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl\|clx]
	Submitted batch job 144405
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J114620_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114620 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114620 --ntasks=8 --jobid=144405 --cpus-per-task=1 --mem=30750M
	section_end:1640245838:prepare_executor [0Ksection_start:1640245838:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on r1i5n30 via bbpv1.epfl.ch...
	section_end:1640245841:prepare_script [0Ksection_start:1640245841:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1640245842:get_sources [0Ksection_start:1640245842:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:intel (114615)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=37046 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=114615 responseStatus[0;m=200 OK token[0;m=q9XiFzx6
	section_end:1640245843:download_artifacts [0Ksection_start:1640245843:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i5n30
	Build name: Linux-icpc
	Create new tag: 20211223-0751 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114615/_/spack-build/spack-stage-coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh/spack-build-aevgkbd
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 17: reporting_1
	1/17 Test #3: alignment_test ..................... Passed 4.95 sec
	2/17 Test #4: queuing_test ....................... Passed 5.17 sec
	Start 7: ring_binqueue_TEST
	3/17 Test #2: interleave_info_constructor_test ... Passed 5.32 sec
	4/17 Test #6: ring_TEST .......................... Passed 5.31 sec
	Start 8: ring_multisend_TEST
	5/17 Test #1: cmd_interface_test ................. Passed 5.54 sec
	Start 9: ring_spike_buffer_TEST
	6/17 Test #17: reporting_1 ........................ Passed 5.54 sec
	7/17 Test #5: lfp_test ........................... Passed 5.64 sec
	Start 10: ring_permute1_TEST
	8/17 Test #8: ring_multisend_TEST ................ Passed 4.01 sec
	Start 11: ring_permute2_TEST
	9/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.92 sec
	Start 12: ring_gap_TEST
	10/17 Test #7: ring_binqueue_TEST ................. Passed 4.27 sec
	Start 13: ring_gap_binqueue_TEST
	11/17 Test #10: ring_permute1_TEST ................. Passed 3.81 sec
	Start 14: ring_gap_multisend_TEST
	12/17 Test #11: ring_permute2_TEST ................. Passed 5.62 sec
	Start 15: ring_gap_permute1_TEST
	13/17 Test #12: ring_gap_TEST ...................... Passed 6.19 sec
	Start 16: ring_gap_permute2_TEST
	14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 6.19 sec
	15/17 Test #14: ring_gap_multisend_TEST ............ Passed 6.24 sec
	16/17 Test #15: ring_gap_permute1_TEST ............. Passed 2.49 sec
	17/17 Test #16: ring_gap_permute2_TEST ............. Passed 2.00 sec

	100% tests passed, 0 tests failed out of 17

	Total Test time (real) = 17.69 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.8.3
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1640245934:step_script [0Ksection_start:1640245934:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=41499 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=114620 responseStatus[0;m=201 Created token[0;m=JHRuT9eM
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=41532 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=114620 responseStatus[0;m=201 Created token[0;m=JHRuT9eM
	section_end:1640245935:upload_artifacts_on_success [0Ksection_start:1640245935:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1640245937:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1640247998:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1640247998:resolve_secrets [0Ksection_start:1640247998:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor532632498, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114621
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114621, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J114621_PROD_P112_CP0_C0
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	Submitted batch job 144498
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J114621_PROD_P112_CP0_C0 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114621 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114621 --ntasks=8 --jobid=144498 --cpus-per-task=1 --mem=30750M
	section_end:1640247999:prepare_executor [0Ksection_start:1640247999:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch...
	section_end:1640248000:prepare_script [0Ksection_start:1640248000:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1640248001:get_sources [0Ksection_start:1640248001:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (114616)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8250 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=114616 responseStatus[0;m=200 OK token[0;m=yeFZenfr
	section_end:1640248002:download_artifacts [0Ksection_start:1640248002:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i5n30
	Build name: Linux-nvc++
	Create new tag: 20211223-0827 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114616/_/spack-build/spack-stage-coreneuron-develop-fzwojn4n4gs3mly2gllogfiwmaydujfg/spack-build-fzwojn4
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	1/18 Test #1: cmd_interface_test ..................... Passed 3.16 sec
	Start 7: ring_binqueue_TEST
	2/18 Test #2: interleave_info_constructor_test ....... Passed 3.31 sec
	3/18 Test #3: alignment_test ......................... Passed 3.56 sec
	Start 8: ring_multisend_TEST
	4/18 Test #4: queuing_test ........................... Passed 3.57 sec
	5/18 Test #5: lfp_test ............................... Passed 3.68 sec
	Start 9: ring_spike_buffer_TEST
	6/18 Test #6: ring_TEST .............................. Passed 16.60 sec
	Start 10: ring_permute1_TEST
	7/18 Test #7: ring_binqueue_TEST ..................... Passed 34.30 sec
	Start 11: ring_permute2_TEST
	8/18 Test #8: ring_multisend_TEST .................... Passed 33.98 sec
	Start 12: ring_gap_TEST
	9/18 Test #9: ring_spike_buffer_TEST ................. Passed 33.90 sec
	Start 13: ring_gap_binqueue_TEST
	10/18 Test #10: ring_permute1_TEST ..................... Passed 29.71 sec
	Start 14: ring_gap_multisend_TEST
	11/18 Test #11: ring_permute2_TEST ..................... Passed 28.65 sec
	Start 15: ring_gap_permute1_TEST
	12/18 Test #13: ring_gap_binqueue_TEST ................. Passed 43.47 sec
	Start 16: ring_gap_permute2_TEST
	13/18 Test #14: ring_gap_multisend_TEST ................ Passed 79.58 sec
	Start 17: ring_permute2_cudaInterface_TEST
	14/18 Test #12: ring_gap_TEST .......................... Passed 95.62 sec
	Start 18: ring_gap_permute2_cudaInterface_TEST
	15/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 14.17 sec
	16/18 Test #15: ring_gap_permute1_TEST ................. Passed 93.06 sec
	17/18 Test #16: ring_gap_permute2_TEST ................. Passed 78.72 sec
	18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 26.64 sec

	100% tests passed, 0 tests failed out of 18

	Total Test time (real) = 159.83 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.8.3
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1640248228:step_script [0Ksection_start:1640248228:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=16911 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=114621 responseStatus[0;m=201 Created token[0;m=s4NzPTA7
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=16942 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=114621 responseStatus[0;m=201 Created token[0;m=s4NzPTA7
	section_end:1640248229:upload_artifacts_on_success [0Ksection_start:1640248229:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1640248231:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1640247658:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1640247658:resolve_secrets [0Ksection_start:1640247658:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor555108628, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 30364, build ref 5c5b8a37c8bc659a2cecaaf54b16775851939d44, job ID 114619
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114619, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J114619_PROD_P112_CP0_C0
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl\|clx]
	Submitted batch job 144494
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J114619_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114619 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P30364/J114619 --ntasks=8 --jobid=144494 --cpus-per-task=1 --mem=30750M
	section_end:1640247660:prepare_executor [0Ksection_start:1640247660:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on r1i5n30 via bbpv1.epfl.ch...
	section_end:1640247665:prepare_script [0Ksection_start:1640247665:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1640247666:get_sources [0Ksection_start:1640247666:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron+nmodl:intel (114614)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=93796 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=114614 responseStatus[0;m=200 OK token[0;m=k8ykWs9P
	section_end:1640247667:download_artifacts [0Ksection_start:1640247667:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i5n30
	Build name: Linux-icpc
	Create new tag: 20211223-0824 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P30364/J114614/_/spack-build/spack-stage-coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3/spack-build-cwjs4t3
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 17: reporting_1
	1/17 Test #3: alignment_test ..................... Passed 2.29 sec
	2/17 Test #1: cmd_interface_test ................. Passed 3.21 sec
	Start 7: ring_binqueue_TEST
	3/17 Test #4: queuing_test ....................... Passed 3.38 sec
	4/17 Test #2: interleave_info_constructor_test ... Passed 3.56 sec
	Start 8: ring_multisend_TEST
	5/17 Test #17: reporting_1 ........................ Passed 3.79 sec
	6/17 Test #5: lfp_test ........................... Passed 3.85 sec
	Start 9: ring_spike_buffer_TEST
	7/17 Test #6: ring_TEST .......................... Passed 3.87 sec
	Start 10: ring_permute1_TEST
	8/17 Test #7: ring_binqueue_TEST ................. Passed 3.26 sec
	Start 11: ring_permute2_TEST
	9/17 Test #8: ring_multisend_TEST ................ Passed 3.66 sec
	Start 12: ring_gap_TEST
	10/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.46 sec
	Start 13: ring_gap_binqueue_TEST
	11/17 Test #10: ring_permute1_TEST ................. Passed 3.53 sec
	Start 14: ring_gap_multisend_TEST
	12/17 Test #11: ring_permute2_TEST ................. Passed 1.77 sec
	Start 15: ring_gap_permute1_TEST
	13/17 Test #12: ring_gap_TEST ...................... Passed 2.98 sec
	Start 16: ring_gap_permute2_TEST
	14/17 Test #14: ring_gap_multisend_TEST ............ Passed 3.70 sec
	15/17 Test #13: ring_gap_binqueue_TEST ............. Passed 4.22 sec
	16/17 Test #15: ring_gap_permute1_TEST ............. Passed 3.36 sec
	17/17 Test #16: ring_gap_permute2_TEST ............. Passed 1.74 sec

	100% tests passed, 0 tests failed out of 17

	Total Test time (real) = 12.00 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.8.3
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1640247897:step_script [0Ksection_start:1640247897:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=105364 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=114619 responseStatus[0;m=201 Created token[0;m=9yb_reA6
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=105396 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=114619 responseStatus[0;m=201 Created token[0;m=9yb_reA6
	section_end:1640247898:upload_artifacts_on_success [0Ksection_start:1640247898:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1640247899:cleanup_file_variables [0K[32;1mJob succeeded[0;m