Created
June 22, 2012 05:50
-
-
Save robsyme/2970592 to your computer and use it in GitHub Desktop.
Apache configuration for galaxy - currently routing display_application requests to root.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
## Starting up Local IGV, which grabs the list of genomes (genomes.txt) | |
x.x.x.x - - [22/Jun/2012:14:31:39 +0800] "GET /igv/genomes.txt HTTP/1.1" 200 8035 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:31:39 +0800] "HEAD /igv/sn15.genome HTTP/1.1" 200 273 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
## Clicking the Local "Display with IGV" link from inside Galaxy | |
x.x.x.x - - [22/Jun/2012:14:32:38 +0800] "GET /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default HTTP/1.1" 302 855 "http://example.org/galaxy/history" "Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/535.19 (KHTML, like Gecko) Ubuntu/11.10 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19" | |
x.x.x.x - - [22/Jun/2012:14:32:38 +0800] "GET /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam.bai HTTP/1.1" 302 1251 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:32:38 +0800] "GET /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam.bai&dataset_id=e2132aef71b11dbf HTTP/1.1" 200 28036 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:32:38 +0800] "HEAD /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam HTTP/1.1" 302 568 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:32:38 +0800] "HEAD /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam&dataset_id=e2132aef71b11dbf HTTP/1.1" 200 391 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:32:38 +0800] "GET /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam HTTP/1.1" 302 1238 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:32:39 +0800] "GET /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam&dataset_id=e2132aef71b11dbf HTTP/1.1" 200 28036 "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
<VirtualHost *:80> | |
ServerAdmin webmaster@localhost | |
DocumentRoot /var/www | |
<Directory /> | |
Options FollowSymLinks | |
AllowOverride None | |
</Directory> | |
<Directory /var/www/> | |
Options Indexes FollowSymLinks MultiViews | |
AllowOverride None | |
Order allow,deny | |
allow from all | |
</Directory> | |
<Directory /var/www/w> | |
AllowOverride All | |
</Directory> | |
ScriptAlias /cgi-bin/ /usr/lib/cgi-bin/ | |
<Directory "/usr/lib/cgi-bin"> | |
AllowOverride None | |
Options +ExecCGI -MultiViews +SymLinksIfOwnerMatch | |
Order allow,deny | |
Allow from all | |
</Directory> | |
ErrorLog ${APACHE_LOG_DIR}/error.log | |
# Possible values include: debug, info, notice, warn, error, crit, | |
# alert, emerg. | |
LogLevel warn | |
CustomLog ${APACHE_LOG_DIR}/access.log combined | |
Alias /doc/ "/usr/share/doc/" | |
<Directory "/usr/share/doc/"> | |
Options Indexes MultiViews FollowSymLinks | |
AllowOverride None | |
Order deny,allow | |
Deny from all | |
Allow from 127.0.0.0/255.0.0.0 ::1/128 | |
</Directory> | |
RewriteEngine on | |
RewriteRule ^/galaxy$ /galaxy/ [R] | |
RewriteRule ^/static/style/(.*) /home/galaxy/galaxy-dist/static/june_2007_style/blue/$1 [L] | |
RewriteRule ^/static/scripts/(.*) /home/galaxy/galaxy-dist/static/scripts/packed/$1 [L] | |
RewriteRule ^/static/(.*) /home/galaxy/galaxy-dist/static/$1 [L] | |
RewriteRule ^/favicon.ico /home/galaxy/galaxy-dist/static/favicon.ico [L] | |
RewriteRule ^/robots.txt /home/galaxy/galaxy-dist/static/robots.txt [L] | |
RewriteRule ^/galaxy(.*) http://localhost:8080$1 [P] | |
Alias /wiki /var/www/w/index.php | |
<Location "/galaxy"> | |
XSendFile on | |
XSendFilePath / | |
</Location> | |
<LocationMatch display_application/[a-zA-Z0-9]+/igv.*> | |
RequestHeader set REMOTE_USER igv_display@example.org | |
Satisfy Any | |
Order deny,allow | |
Allow from all | |
</LocationMatch> | |
</VirtualHost> |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
## Clicking the Local "Display with IGV" link from inside Galaxy | |
x.x.x.x - - [22/Jun/2012:14:42:40 +0800] "GET /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default HTTP/1.1" 302 - "http://example.org/galaxy/history" "Mozilla/5.0 (X11; Linux x86_64) AppleWebKit/535.19 (KHTML, like Gecko) Ubuntu/11.10 Chromium/18.0.1025.168 Chrome/18.0.1025.168 Safari/535.19" | |
x.x.x.x - - [22/Jun/2012:14:42:40 +0800] "GET /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam.bai HTTP/1.1" 302 - "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
galaxy.web.framework DEBUG 2012-06-22 14:42:40,176 Error: this request returned None from get_history(): http://example.org/galaxy/root | |
x.x.x.x - - [22/Jun/2012:14:42:40 +0800] "GET /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam.bai&dataset_id=e2132aef71b11dbf HTTP/1.1" 200 - "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:42:40 +0800] "HEAD /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam HTTP/1.1" 302 - "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
galaxy.web.framework DEBUG 2012-06-22 14:42:40,238 Error: this request returned None from get_history(): http://example.org/galaxy/root | |
x.x.x.x - - [22/Jun/2012:14:42:40 +0800] "HEAD /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam&dataset_id=e2132aef71b11dbf HTTP/1.1" 200 - "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
x.x.x.x - - [22/Jun/2012:14:42:40 +0800] "GET /galaxy/display_application/e2132aef71b11dbf/igv_bam/local_default/cc7ba224ab9e7b70/data/galaxy_e2132aef71b11dbf.bam HTTP/1.1" 302 - "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" | |
galaxy.web.framework DEBUG 2012-06-22 14:42:40,313 Error: this request returned None from get_history(): http://example.org/galaxy/root | |
x.x.x.x - - [22/Jun/2012:14:42:40 +0800] "GET /galaxy/root?app_action=data&user_id=cc7ba224ab9e7b70&app_name=igv_bam&link_name=local_default&action_param=galaxy_e2132aef71b11dbf.bam&dataset_id=e2132aef71b11dbf HTTP/1.1" 200 - "-" "IGV Version 2.1.18 (2530)06/10/2012 09:58 PM" |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment