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chapmanb/biogateway_search_ex.py

Created February 11, 2010 09:27
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biogateway_search_ex.py
from systemsbio import Biogateway, UniProtGOQueryBuilder
builder = UniProtGOQueryBuilder("Homo sapiens")
builder.add_filter("GO_term", "insulin")
builder.add_filter("disease_description", "diabetes")
builder.add_attributes(["protein_name", "interactor", "gene_name"])
server = Biogateway()
results = server.search(builder)
print len(results), results.dtype.names
result = results[0]
print result['protein_name'], result['gene_name'], \
result['interactor'], result['GO_term']
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