create trajectory pngs

gistfile1.py

##Thanks to Hemochromatosis journal for help
load ../../referenz_close_lessshallow.pse, ref
load ../../Output/178H/out/178H.pdb, traj

align traj, REFERENZchaina
zoom traj, buffer=-6
delete REFERENZchaina

#Representations and colouring
hide everything, all
show cartoon, traj

#Calc sec str for every frame
dss

colour green
select mutations, resi 11+15
color red, mutations
show sticks, mutations

##Create pngs of movie
mset 1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1700 1800 1900 2000
viewport 900, 675
bg_color white
set ray_opaque_background, off
set ray_trace_frames, 1
set ray_shadows,0;
set cache_frames=0
set ray_trace_mode, 0; # color raytrace, no outlines
set antialias, 2;   #High anti-aliasings
mclear
mpng mov