A sample python script for downloading the current non-redundant lists from the RNA 3D Hub
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""" | |
A sample python script for downloading the current non-redundant lists from | |
the RNA 3D Hub (http://rna.bgsu.edu/rna3dhub). | |
Usage: | |
python download_nrlist.py | |
""" | |
import urllib2 | |
# nrlist are provided at 8 resolution cutoffs | |
resolutions = ['1.5A', '2.0A', '2.5A', '3.0A', '3.5A', '4.0A', '20.0A', 'all'] | |
base_url = 'http://rna.bgsu.edu/rna3dhub/nrlist/download' | |
for resolution in resolutions: | |
release = 'current' # can be replaced with a specific release id, e.g. 0.70 | |
url = '/'.join([base_url, release, resolution]) | |
try: | |
nrdata = urllib2.urlopen( url ).read() | |
# nrdata now contains the string with data in csv format | |
print "Release %s, resolution %s: download complete" % \ | |
(release, resolution) | |
except: | |
print "Release %s, resolution %s: download failed" % \ | |
(release, resolution) |
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