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seandavi/update.ucsc.db.sh

Created October 7, 2012 15:47
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Mirror ucsc database tables from server directory to local server directory
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update.ucsc.db.sh
#!/bin/bash
# Mirror the normal directories
for DIR in go hg18 hg19 canFam2 mm9 mm10 hgFixed;
do
rsync -avLzP rsync://hgdownload.cse.ucsc.edu/mysql/$DIR/ /var/lib/mysql/$DIR/;
done;
# And do the soft link directories
for DIR in uniProt proteome;
do
rsync -avLzP --recursive rsync://hgdownload.cse.ucsc.edu/mysql/$DIR/ /var/lib/mysql/$DIR/;
done;
# And change the owner....
/usr/sbin/chown -R mysql:mysql /var/lib/mysql/*
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