Created
October 31, 2012 01:24
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01.configure
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checking build system type... x86_64-apple-darwin12.2.0 | |
checking host system type... x86_64-apple-darwin12.2.0 | |
loading site script './config.site' | |
loading build-specific script './config.site' | |
checking for pwd... /bin/pwd | |
checking whether builddir is srcdir... yes | |
checking for working aclocal... found | |
checking for working autoconf... found | |
checking for working automake... found | |
checking for working autoheader... found | |
checking for gawk... no | |
checking for mawk... no | |
checking for nawk... no | |
checking for awk... awk | |
checking whether ln -s works... yes | |
checking for bison... bison -y | |
checking for ar... ar | |
checking for a BSD-compatible install... /usr/bin/install -c | |
checking for sed... /usr/local/Library/ENV/4.3/sed | |
checking for which... /usr/bin/which | |
checking for less... /usr/bin/less | |
checking for gtar... no | |
checking for gnutar... /usr/bin/gnutar | |
checking for tex... no | |
checking for pdftex... no | |
configure: WARNING: you cannot build PDF versions of the R manuals | |
checking for pdflatex... no | |
configure: WARNING: you cannot build PDF versions of vignettes and help pages | |
checking for makeindex... no | |
checking for makeinfo... /usr/bin/makeinfo | |
checking whether makeinfo version is at least 4.7... yes | |
checking for ginstall-info... no | |
checking for install-info... /usr/bin/install-info | |
checking for texi2dvi... /usr/bin/texi2dvi | |
checking for kpsewhich... no | |
checking for unzip... /usr/bin/unzip | |
checking for zip... /usr/bin/zip | |
checking for gzip... /usr/bin/gzip | |
checking for bzip2... /usr/bin/bzip2 | |
checking for firefox... no | |
checking for mozilla... no | |
checking for galeon... no | |
checking for opera... no | |
checking for xdg-open... no | |
checking for kfmclient... no | |
checking for gnome-moz-remote... no | |
checking for open... /usr/bin/open | |
using default browser ... /usr/bin/open | |
checking for acroread... no | |
checking for acroread4... no | |
checking for xdg-open... no | |
checking for evince... no | |
checking for xpdf... no | |
checking for gv... no | |
checking for gnome-gv... no | |
checking for ggv... no | |
checking for okular... no | |
checking for kpdf... no | |
checking for open... /usr/bin/open | |
checking for notangle... false | |
checking for pkg-config... /usr/local/bin/pkg-config | |
checking for gcc... cc | |
checking whether the C compiler works... yes | |
checking for C compiler default output file name... a.out | |
checking for suffix of executables... | |
checking whether we are cross compiling... no | |
checking for suffix of object files... o | |
checking whether we are using the GNU C compiler... yes | |
checking whether cc accepts -g... yes | |
checking for cc option to accept ISO C89... none needed | |
checking how to run the C preprocessor... cc -E | |
checking for grep that handles long lines and -e... /usr/bin/grep | |
checking for egrep... /usr/bin/grep -E | |
checking whether cc needs -traditional... no | |
checking how to run the C preprocessor... cc -E | |
defining F77 to be /usr/local/bin/gfortran | |
checking whether we are using the GNU Fortran 77 compiler... yes | |
checking whether /usr/local/bin/gfortran accepts -g... yes | |
checking whether we are using the GNU C++ compiler... yes | |
checking whether c++ accepts -g... yes | |
checking how to run the C++ preprocessor... c++ -E | |
checking whether __attribute__((visibility())) is supported... no | |
checking whether cc accepts -fvisibility... yes | |
checking whether /usr/local/bin/gfortran accepts -fvisibility... yes | |
checking for ANSI C header files... yes | |
checking for sys/types.h... yes | |
checking for sys/stat.h... yes | |
checking for stdlib.h... yes | |
checking for string.h... yes | |
checking for memory.h... yes | |
checking for strings.h... yes | |
checking for inttypes.h... yes | |
checking for stdint.h... yes | |
checking for unistd.h... yes | |
checking minix/config.h usability... no | |
checking minix/config.h presence... no | |
checking for minix/config.h... no | |
checking whether it is safe to define __EXTENSIONS__... yes | |
checking for gcc... gcc | |
checking whether we are using the GNU Objective C compiler... yes | |
checking whether gcc accepts -g... yes | |
checking for Objective C++ compiler... trying some possibilities | |
checking whether c++ can compile ObjC++... yes | |
c++ | |
checking for a sed that does not truncate output... (cached) /usr/local/Library/ENV/4.3/sed | |
checking for fgrep... /usr/bin/grep -F | |
checking for ld used by cc... /usr/bin/ld | |
checking if the linker (/usr/bin/ld) is GNU ld... no | |
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm | |
checking the name lister (/usr/bin/nm) interface... BSD nm | |
checking the maximum length of command line arguments... 196608 | |
checking whether the shell understands some XSI constructs... yes | |
checking whether the shell understands "+="... yes | |
checking for /usr/bin/ld option to reload object files... -r | |
checking for objdump... no | |
checking how to recognize dependent libraries... pass_all | |
checking for strip... strip | |
checking for ranlib... ranlib | |
checking command to parse /usr/bin/nm output from cc object... ok | |
checking for dsymutil... dsymutil | |
checking for nmedit... nmedit | |
checking for lipo... lipo | |
checking for otool... otool | |
checking for otool64... no | |
checking for -single_module linker flag... yes | |
checking for -exported_symbols_list linker flag... yes | |
checking for dlfcn.h... yes | |
checking whether we are using the GNU C++ compiler... (cached) yes | |
checking whether c++ accepts -g... (cached) yes | |
checking how to run the C++ preprocessor... c++ -E | |
checking whether we are using the GNU Fortran 77 compiler... (cached) yes | |
checking whether /usr/local/bin/gfortran accepts -g... (cached) yes | |
checking for objdir... .libs | |
checking if cc supports -fno-rtti -fno-exceptions... yes | |
checking for cc option to produce PIC... -fno-common -DPIC | |
checking if cc PIC flag -fno-common -DPIC works... yes | |
checking if cc static flag -static works... no | |
checking if cc supports -c -o file.o... yes | |
checking if cc supports -c -o file.o... (cached) yes | |
checking whether the cc linker (/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin12.2.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking whether stripping libraries is possible... yes | |
checking if libtool supports shared libraries... yes | |
checking whether to build shared libraries... yes | |
checking whether to build static libraries... no | |
checking for ld used by c++... /usr/bin/ld | |
checking if the linker (/usr/bin/ld) is GNU ld... no | |
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes | |
checking for c++ option to produce PIC... -fno-common -DPIC | |
checking if c++ PIC flag -fno-common -DPIC works... yes | |
checking if c++ static flag -static works... no | |
checking if c++ supports -c -o file.o... yes | |
checking if c++ supports -c -o file.o... (cached) yes | |
checking whether the c++ linker (/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin12.2.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking if libtool supports shared libraries... yes | |
checking whether to build shared libraries... yes | |
checking whether to build static libraries... no | |
checking for /usr/local/bin/gfortran option to produce PIC... -fno-common | |
checking if /usr/local/bin/gfortran PIC flag -fno-common works... yes | |
checking if /usr/local/bin/gfortran static flag -static works... no | |
checking if /usr/local/bin/gfortran supports -c -o file.o... yes | |
checking if /usr/local/bin/gfortran supports -c -o file.o... (cached) yes | |
checking whether the /usr/local/bin/gfortran linker (/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin12.2.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking for sin in -lm... yes | |
checking for library containing dlopen... none required | |
checking readline/history.h usability... yes | |
checking readline/history.h presence... yes | |
checking for readline/history.h... yes | |
checking readline/readline.h usability... yes | |
checking readline/readline.h presence... yes | |
checking for readline/readline.h... yes | |
checking for rl_callback_read_char in -lreadline... yes | |
checking for history_truncate_file... yes | |
checking whether rl_completion_matches exists and is declared... yes | |
checking for ANSI C header files... (cached) yes | |
checking for dirent.h that defines DIR... yes | |
checking for library containing opendir... none required | |
checking for sys/wait.h that is POSIX.1 compatible... yes | |
checking arpa/inet.h usability... yes | |
checking arpa/inet.h presence... yes | |
checking for arpa/inet.h... yes | |
checking dl.h usability... no | |
checking dl.h presence... no | |
checking for dl.h... no | |
checking for dlfcn.h... (cached) yes | |
checking elf.h usability... no | |
checking elf.h presence... no | |
checking for elf.h... no | |
checking fcntl.h usability... yes | |
checking fcntl.h presence... yes | |
checking for fcntl.h... yes | |
checking floatingpoint.h usability... no | |
checking floatingpoint.h presence... no | |
checking for floatingpoint.h... no | |
checking fpu_control.h usability... no | |
checking fpu_control.h presence... no | |
checking for fpu_control.h... no | |
checking glob.h usability... yes | |
checking glob.h presence... yes | |
checking for glob.h... yes | |
checking grp.h usability... yes | |
checking grp.h presence... yes | |
checking for grp.h... yes | |
checking netdb.h usability... yes | |
checking netdb.h presence... yes | |
checking for netdb.h... yes | |
checking netinet/in.h usability... yes | |
checking netinet/in.h presence... yes | |
checking for netinet/in.h... yes | |
checking pwd.h usability... yes | |
checking pwd.h presence... yes | |
checking for pwd.h... yes | |
checking for strings.h... (cached) yes | |
checking sys/param.h usability... yes | |
checking sys/param.h presence... yes | |
checking for sys/param.h... yes | |
checking sys/resource.h usability... yes | |
checking sys/resource.h presence... yes | |
checking for sys/resource.h... yes | |
checking sys/select.h usability... yes | |
checking sys/select.h presence... yes | |
checking for sys/select.h... yes | |
checking sys/socket.h usability... yes | |
checking sys/socket.h presence... yes | |
checking for sys/socket.h... yes | |
checking for sys/stat.h... (cached) yes | |
checking sys/time.h usability... yes | |
checking sys/time.h presence... yes | |
checking for sys/time.h... yes | |
checking sys/times.h usability... yes | |
checking sys/times.h presence... yes | |
checking for sys/times.h... yes | |
checking sys/utsname.h usability... yes | |
checking sys/utsname.h presence... yes | |
checking for sys/utsname.h... yes | |
checking for unistd.h... (cached) yes | |
checking utime.h usability... yes | |
checking utime.h presence... yes | |
checking for utime.h... yes | |
checking errno.h usability... yes | |
checking errno.h presence... yes | |
checking for errno.h... yes | |
checking for inttypes.h... (cached) yes | |
checking limits.h usability... yes | |
checking limits.h presence... yes | |
checking for limits.h... yes | |
checking locale.h usability... yes | |
checking locale.h presence... yes | |
checking for locale.h... yes | |
checking stdarg.h usability... yes | |
checking stdarg.h presence... yes | |
checking for stdarg.h... yes | |
checking stdbool.h usability... yes | |
checking stdbool.h presence... yes | |
checking for stdbool.h... yes | |
checking for stdint.h... (cached) yes | |
checking for string.h... (cached) yes | |
checking whether setjmp.h is POSIX.1 compatible... yes | |
checking whether sigsetjmp is declared... yes | |
checking whether siglongjmp is declared... yes | |
checking for GNU C library with version >= 2... no | |
checking return type of signal handlers... void | |
checking for uint64_t... yes | |
checking for pid_t... yes | |
checking for size_t... yes | |
checking whether SIZE_MAX is declared... yes | |
checking for blkcnt_t... yes | |
checking for type of socket length... socklen_t * | |
checking for stack_t... yes | |
checking for intptr_t... yes | |
checking for uintptr_t... yes | |
checking whether byte ordering is bigendian... no | |
checking for an ANSI C-conforming const... yes | |
checking for cc option to accept ISO C99... none needed | |
checking for cc option to accept ISO Standard C... (cached) none needed | |
checking for inline... inline | |
checking size of int... 4 | |
checking size of long... 8 | |
checking size of long long... 8 | |
checking size of double... 8 | |
checking size of long double... 16 | |
checking size of size_t... 8 | |
checking whether we can compute C Make dependencies... yes, using cc -MM | |
checking whether cc supports -c -o FILE.lo... yes | |
checking for cc option to support OpenMP... unsupported | |
checking how to get verbose linking output from /usr/local/bin/gfortran... -v | |
checking for Fortran 77 libraries of /usr/local/bin/gfortran... -L/usr/local/lib -L/usr/local/Cellar/gfortran/4.2.4-5666.3/bin/../lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/lib/gcc/i686-apple-darwin11/4.2.1/x86_64 -L/usr/lib/i686-apple-darwin11/4.2.1 -L/usr/local/Cellar/gfortran/4.2.4-5666.3/bin/../lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/local/Cellar/gfortran/4.2.4-5666.3/bin/../lib/gcc -L/usr/lib/gcc/i686-apple-darwin11/4.2.1 -L/usr/local/Cellar/gfortran/4.2.4-5666.3/bin/../lib/gcc/i686-apple-darwin11/4.2.1/../../.. -L/usr/lib/gcc/i686-apple-darwin11/4.2.1/../../../i686-apple-darwin11/4.2.1 -L/usr/lib/gcc/i686-apple-darwin11/4.2.1/../../.. -lgfortranbegin -lgfortran | |
checking how to get verbose linking output from cc... -v | |
checking for C libraries of cc... -lcrt1.10.6.o -L/usr/local/lib -L/usr/local/opt/readline/lib -L/usr/X11/lib -lSystem | |
checking for dummy main to link with Fortran 77 libraries... none | |
checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore | |
checking whether /usr/local/bin/gfortran appends underscores to external names... yes | |
checking whether /usr/local/bin/gfortran appends extra underscores to external names... no | |
checking whether mixed C/Fortran code can be run... yes | |
checking whether /usr/local/bin/gfortran and cc agree on int and double... yes | |
checking whether /usr/local/bin/gfortran and cc agree on double complex... yes | |
checking for /usr/local/bin/gfortran option to support OpenMP... -fopenmp | |
checking whether c++ accepts -M for generating dependencies... yes | |
checking for c++ option to support OpenMP... unsupported | |
checking whether we can compute ObjC Make dependencies... yes, using gcc -MM | |
checking for ObjC runtime library... -lobjc | |
checking for ObjC runtime style... next | |
checking whether gcc accepts -fobjc-exceptions... yes | |
checking for cached Foundation settings... no | |
checking whether default Foundation framework works... no | |
checking whether -framework Foundation works... no | |
checking whether libFoundation works... no | |
checking for GNUstep... no | |
checking for working Foundation implementation... no | |
checking whether C runtime needs -D__NO_MATH_INLINES... no | |
checking for xmkmf... no | |
checking whether linker supports dynamic lookup... yes | |
checking for off_t... yes | |
checking for working alloca.h... yes | |
checking for alloca... yes | |
checking whether alloca is declared... yes | |
checking whether expm1 exists and is declared... yes | |
checking whether hypot exists and is declared... yes | |
checking whether log1p exists and is declared... yes | |
checking whether log2 exists and is declared... yes | |
checking whether log10 exists and is declared... yes | |
checking whether nearbyint exists and is declared... yes | |
checking whether nearbyintl exists and is declared... yes | |
checking whether powl exists and is declared... yes | |
checking whether rint exists and is declared... yes | |
checking whether rintl exists and is declared... yes | |
checking whether va_copy exists and is declared... yes | |
checking for isblank... yes | |
checking for fseeko... yes | |
checking for ftello... yes | |
checking for matherr... yes | |
checking whether fcntl exists and is declared... yes | |
checking whether getgrgid exists and is declared... yes | |
checking whether getpwuid exists and is declared... yes | |
checking whether kill exists and is declared... yes | |
checking whether sigaction exists and is declared... yes | |
checking whether sigaltstack exists and is declared... yes | |
checking whether sigemptyset exists and is declared... yes | |
checking whether fdopen exists and is declared... yes | |
checking whether popen exists and is declared... yes | |
checking whether setenv exists and is declared... yes | |
checking whether unsetenv exists and is declared... yes | |
checking whether getrlimit exists and is declared... yes | |
checking whether getrusage exists and is declared... yes | |
checking whether getpriority exists and is declared... yes | |
checking whether chmod exists and is declared... yes | |
checking whether mkfifo exists and is declared... yes | |
checking whether stat exists and is declared... yes | |
checking whether umask exists and is declared... yes | |
checking whether gettimeofday exists and is declared... yes | |
checking whether utimes exists and is declared... yes | |
checking whether times exists and is declared... yes | |
checking whether access exists and is declared... yes | |
checking whether chdir exists and is declared... yes | |
checking whether execv exists and is declared... yes | |
checking whether ftruncate exists and is declared... yes | |
checking whether getcwd exists and is declared... yes | |
checking whether geteuid exists and is declared... yes | |
checking whether getuid exists and is declared... yes | |
checking whether link exists and is declared... yes | |
checking whether readlink exists and is declared... yes | |
checking whether symlink exists and is declared... yes | |
checking whether sysconf exists and is declared... yes | |
checking whether utime exists and is declared... yes | |
checking whether clock_gettime exists and is declared... no | |
checking whether timespec_get exists and is declared... no | |
checking for putenv... yes | |
checking whether putenv is declared... yes | |
checking for vasprintf... yes | |
checking whether vasprintf is declared... yes | |
checking for mempcpy... no | |
checking for realpath... yes | |
checking whether realpath is declared... yes | |
checking whether glob exists and is declared... yes | |
checking for isnan... yes | |
checking whether isfinite is declared... yes | |
checking whether isnan is declared... yes | |
checking whether you have IEEE 754 floating-point arithmetic... yes | |
checking whether putenv("FOO") can unset an environment variable... no | |
checking whether putenv("FOO=") can unset an environment variable... no | |
checking for nl_langinfo and CODESET... yes | |
checking for mkdtemp... yes | |
checking for strdup... yes | |
checking for strncasecmp... yes | |
checking whether mkdtemp is declared... yes | |
checking whether strdup is declared... yes | |
checking whether strncasecmp is declared... yes | |
checking for library containing connect... none required | |
checking for library containing gethostbyname... none required | |
checking for library containing xdr_string... none required | |
checking for __setfpucw... no | |
checking for working calloc... yes | |
checking for working isfinite... yes | |
checking for working log1p... yes | |
checking whether ftell works correctly on files opened for append... yes | |
checking for working sigaction... yes | |
checking whether mktime sets errno... no | |
checking complex.h usability... yes | |
checking complex.h presence... yes | |
checking for complex.h... yes | |
checking for double complex... yes | |
checking whether C99 double complex is supported... yes | |
checking whether cabs exists and is declared... yes | |
checking whether carg exists and is declared... yes | |
checking whether cexp exists and is declared... yes | |
checking whether clog exists and is declared... yes | |
checking whether csqrt exists and is declared... yes | |
checking whether cpow exists and is declared... yes | |
checking whether ccos exists and is declared... yes | |
checking whether csin exists and is declared... yes | |
checking whether ctan exists and is declared... yes | |
checking whether cacos exists and is declared... yes | |
checking whether casin exists and is declared... yes | |
checking whether catan exists and is declared... yes | |
checking whether ccosh exists and is declared... yes | |
checking whether csinh exists and is declared... yes | |
checking whether ctanh exists and is declared... yes | |
checking for cblas_cdotu_sub in vecLib framework... -framework vecLib | |
checking iconv.h usability... yes | |
checking iconv.h presence... yes | |
checking for iconv.h... yes | |
checking for iconv... in libiconv | |
checking whether iconv accepts "UTF-8", "latin1", "ASCII" and "UCS-*"... yes | |
checking for iconvlist... yes | |
checking for iconv... yes | |
checking for iconv declaration... | |
extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
checking wchar.h usability... yes | |
checking wchar.h presence... yes | |
checking for wchar.h... yes | |
checking wctype.h usability... yes | |
checking wctype.h presence... yes | |
checking for wctype.h... yes | |
checking whether mbrtowc exists and is declared... yes | |
checking whether wcrtomb exists and is declared... yes | |
checking whether wcscoll exists and is declared... yes | |
checking whether wcsftime exists and is declared... yes | |
checking whether wcstod exists and is declared... yes | |
checking whether mbstowcs exists and is declared... yes | |
checking whether wcstombs exists and is declared... yes | |
checking whether wctrans exists and is declared... yes | |
checking whether iswblank exists and is declared... yes | |
checking whether wctype exists and is declared... yes | |
checking whether iswctype exists and is declared... yes | |
checking for wctrans_t... yes | |
checking for mbstate_t... yes | |
checking for ICU... no | |
checking for ucol_open in -licucore... yes | |
checking for X... libraries , headers | |
checking for gethostbyname... yes | |
checking for connect... yes | |
checking for remove... yes | |
checking for shmat... yes | |
checking for IceConnectionNumber in -lICE... yes | |
checking X11/Intrinsic.h usability... yes | |
checking X11/Intrinsic.h presence... yes | |
checking for X11/Intrinsic.h... yes | |
checking for XtToolkitInitialize in -lXt... yes | |
using X11 ... yes | |
checking for KeySym... yes | |
checking X11/Xmu/Atoms.h usability... yes | |
checking X11/Xmu/Atoms.h presence... yes | |
checking for X11/Xmu/Atoms.h... yes | |
checking for XmuInternAtom in -lXmu... yes | |
checking whether pkg-config knows about cairo and pango... yes | |
checking whether cairo including pango is >= 1.2 and works... yes | |
checking for CFStringGetSystemEncoding in CoreFoundation framework... -framework CoreFoundation | |
checking for tclConfig.sh... no | |
checking for tclConfig.sh in library (sub)directories... /usr/lib/tclConfig.sh | |
checking for tkConfig.sh... no | |
checking for tkConfig.sh in library (sub)directories... /usr/lib/tkConfig.sh | |
checking tcl.h usability... yes | |
checking tcl.h presence... yes | |
checking for tcl.h... yes | |
checking tk.h usability... yes | |
checking tk.h presence... yes | |
checking for tk.h... yes | |
checking whether compiling/linking Tcl/Tk code works... yes | |
checking for BSD networking... yes | |
checking if jpeglib version >= 6b... yes | |
checking for jpeg_destroy_compress in -ljpeg... yes | |
checking for main in -lz... yes | |
checking if libpng version >= 1.2.7... yes | |
checking for png_create_write_struct in -lpng... yes | |
checking tiffio.h usability... yes | |
checking tiffio.h presence... yes | |
checking for tiffio.h... yes | |
checking for TIFFOpen in -ltiff... yes | |
checking rpc/types.h usability... yes | |
checking rpc/types.h presence... yes | |
checking for rpc/types.h... yes | |
checking for rpc/xdr.h... yes | |
checking for XDR support... yes | |
checking whether zlib support needs to be compiled... yes | |
checking mmap support for zlib... yes | |
checking whether bzip2 support needs to be compiled... yes | |
checking for lzma_version_number in -llzma... yes | |
checking lzma.h usability... yes | |
checking lzma.h presence... yes | |
checking for lzma.h... yes | |
checking if lzma version >= 4.999... yes | |
checking whether PCRE support needs to be compiled... yes | |
checking whether leap seconds are treated according to POSIX... yes | |
checking for inline... inline | |
checking for sys/time.h... (cached) yes | |
checking for stdlib.h... (cached) yes | |
checking for unistd.h... (cached) yes | |
checking for sys/param.h... (cached) yes | |
checking for struct stat.st_atim.tv_nsec... no | |
checking for struct stat.st_atimespec.tv_nsec... yes | |
checking for setitimer... yes | |
checking for special C compiler options needed for large files... no | |
checking for _FILE_OFFSET_BITS value needed for large files... no | |
checking for _LARGEFILE_SOURCE value needed for large files... no | |
checking whether KERN_USRSTACK sysctl is supported... yes | |
checking for lpr... lpr | |
checking for paperconf... false | |
checking for java... /usr/bin/java | |
checking for javac... /usr/bin/javac | |
checking for javah... /usr/bin/javah | |
checking for jar... /usr/bin/jar | |
checking whether Java compiler works... yes | |
checking whether Java compiler works for version 1.4... yes | |
checking whether Java interpreter works... yes | |
checking Java environment... /System/Library/Java/JavaVirtualMachines/1.6.0.jdk/Contents/Home | |
checking for cached Java settings... no | |
checking whether JNI programs can be compiled... no | |
checking whether we are using the GNU Fortran compiler... yes | |
checking whether /usr/local/bin/gfortran accepts -g... yes | |
checking whether we are using the GNU Fortran compiler... (cached) yes | |
checking whether /usr/local/bin/gfortran accepts -g... (cached) yes | |
checking if libtool supports shared libraries... yes | |
checking whether to build shared libraries... yes | |
checking whether to build static libraries... no | |
checking for /usr/local/bin/gfortran option to produce PIC... -fno-common | |
checking if /usr/local/bin/gfortran PIC flag -fno-common works... yes | |
checking if /usr/local/bin/gfortran static flag -static works... no | |
checking if /usr/local/bin/gfortran supports -c -o file.o... yes | |
checking if /usr/local/bin/gfortran supports -c -o file.o... (cached) yes | |
checking whether the /usr/local/bin/gfortran linker (/usr/bin/ld) supports shared libraries... yes | |
checking dynamic linker characteristics... darwin12.2.0 dyld | |
checking how to hardcode library paths into programs... immediate | |
checking for Fortran flag to compile .f90 files... none | |
checking for Fortran flag to compile .f95 files... none | |
checking for /usr/local/bin/gfortran option to support OpenMP... -fopenmp | |
checking for recommended packages... yes | |
checking whether NLS is requested... yes | |
Configuring src/extra/intl directory | |
checking whether make sets $(MAKE)... yes | |
checking for a thread-safe mkdir -p... tools/install-sh -c -d | |
checking for msgfmt... no | |
checking for gmsgfmt... : | |
checking for xgettext... no | |
checking for msgmerge... no | |
checking whether we are using the GNU C Library 2 or newer... no | |
checking for ranlib... (cached) ranlib | |
checking for simple visibility declarations... yes | |
checking for stdint.h... yes | |
checking for getpagesize... yes | |
checking for working mmap... yes | |
checking whether integer division by zero raises SIGFPE... yes | |
checking for inttypes.h... yes | |
checking for unsigned long long int... yes | |
checking for inttypes.h... (cached) yes | |
checking whether the inttypes.h PRIxNN macros are broken... no | |
checking whether imported symbols can be declared weak... no | |
checking for multithread API to use... none | |
checking argz.h usability... no | |
checking argz.h presence... no | |
checking for argz.h... no | |
checking for inttypes.h... (cached) yes | |
checking for limits.h... (cached) yes | |
checking for unistd.h... (cached) yes | |
checking for sys/param.h... (cached) yes | |
checking for getcwd... yes | |
checking for getegid... yes | |
checking for geteuid... yes | |
checking for getgid... yes | |
checking for getuid... yes | |
checking for mempcpy... (cached) no | |
checking for munmap... yes | |
checking for stpcpy... yes | |
checking for strcasecmp... yes | |
checking for strdup... (cached) yes | |
checking for strtoul... yes | |
checking for tsearch... yes | |
checking for argz_count... no | |
checking for argz_stringify... no | |
checking for argz_next... no | |
checking for __fsetlocking... no | |
checking whether feof_unlocked is declared... yes | |
checking whether fgets_unlocked is declared... no | |
checking for iconv... (cached) yes | |
checking for iconv declaration... (cached) | |
extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); | |
checking for NL_LOCALE_NAME macro... no | |
checking for bison... bison | |
checking version of bison... 2.3, ok | |
checking for long long int... yes | |
checking for long double... yes | |
checking for wchar_t... yes | |
checking for wint_t... yes | |
checking for intmax_t... yes | |
checking whether printf() supports POSIX/XSI format strings... yes | |
checking whether we are using the GNU C Library 2.1 or newer... no | |
checking for stdint.h... (cached) yes | |
checking for SIZE_MAX... yes | |
checking for stdint.h... (cached) yes | |
checking for CFPreferencesCopyAppValue... no | |
checking for CFLocaleCopyCurrent... no | |
checking for ptrdiff_t... yes | |
checking stddef.h usability... yes | |
checking stddef.h presence... yes | |
checking for stddef.h... yes | |
checking for stdlib.h... (cached) yes | |
checking for string.h... (cached) yes | |
checking for asprintf... yes | |
checking for fwprintf... yes | |
checking for putenv... (cached) yes | |
checking for setenv... yes | |
checking for setlocale... yes | |
checking for snprintf... yes | |
checking for wcslen... yes | |
checking whether _snprintf is declared... no | |
checking whether _snwprintf is declared... no | |
checking whether getc_unlocked is declared... yes | |
checking for nl_langinfo and CODESET... (cached) yes | |
checking for LC_MESSAGES... yes | |
checking for shared library run path origin... done | |
checking for CFPreferencesCopyAppValue... (cached) no | |
checking for CFLocaleCopyCurrent... (cached) no | |
checking whether included gettext is requested... no | |
checking for GNU gettext in libc... no | |
checking for GNU gettext in libintl... no | |
checking whether to use NLS... yes | |
checking where the gettext function comes from... included intl directory | |
Finished configuring src/extra/intl directory | |
using as R_SHELL for scripts ... /bin/sh | |
configure: creating ./config.status | |
config.status: creating Makeconf | |
config.status: creating Makefile | |
config.status: creating doc/Makefile | |
config.status: creating doc/html/Makefile | |
config.status: creating doc/manual/Makefile | |
config.status: creating etc/Makefile | |
config.status: creating etc/Makeconf | |
config.status: creating etc/Renviron | |
config.status: creating etc/ldpaths | |
config.status: creating m4/Makefile | |
config.status: creating po/Makefile.in | |
config.status: creating share/Makefile | |
config.status: creating src/Makefile | |
config.status: creating src/appl/Makefile | |
config.status: creating src/extra/Makefile | |
config.status: creating src/extra/blas/Makefile | |
config.status: creating src/extra/bzip2/Makefile | |
config.status: creating src/extra/intl/Makefile | |
config.status: creating src/extra/pcre/Makefile | |
config.status: creating src/extra/tre/Makefile | |
config.status: creating src/extra/xdr/Makefile | |
config.status: creating src/extra/xz/Makefile | |
config.status: creating src/extra/zlib/Makefile | |
config.status: creating src/include/Makefile | |
config.status: creating src/include/Rmath.h0 | |
config.status: creating src/include/R_ext/Makefile | |
config.status: creating src/library/Recommended/Makefile | |
config.status: creating src/library/Makefile | |
config.status: creating src/library/base/DESCRIPTION | |
config.status: creating src/library/base/Makefile | |
config.status: creating src/library/compiler/DESCRIPTION | |
config.status: creating src/library/compiler/Makefile | |
config.status: creating src/library/datasets/DESCRIPTION | |
config.status: creating src/library/datasets/Makefile | |
config.status: creating src/library/graphics/DESCRIPTION | |
config.status: creating src/library/graphics/Makefile | |
config.status: creating src/library/grDevices/DESCRIPTION | |
config.status: creating src/library/grDevices/Makefile | |
config.status: creating src/library/grDevices/src/Makefile | |
config.status: creating src/library/grDevices/src/cairo/Makefile | |
config.status: creating src/library/grid/DESCRIPTION | |
config.status: creating src/library/grid/Makefile | |
config.status: creating src/library/grid/src/Makefile | |
config.status: creating src/library/methods/DESCRIPTION | |
config.status: creating src/library/methods/Makefile | |
config.status: creating src/library/methods/src/Makefile | |
config.status: creating src/library/parallel/DESCRIPTION | |
config.status: creating src/library/parallel/Makefile | |
config.status: creating src/library/parallel/src/Makefile | |
config.status: creating src/library/profile/Makefile | |
config.status: creating src/library/stats/DESCRIPTION | |
config.status: creating src/library/stats/Makefile | |
config.status: creating src/library/stats/src/Makefile | |
config.status: creating src/library/stats4/DESCRIPTION | |
config.status: creating src/library/stats4/Makefile | |
config.status: creating src/library/splines/DESCRIPTION | |
config.status: creating src/library/splines/Makefile | |
config.status: creating src/library/splines/src/Makefile | |
config.status: creating src/library/tcltk/DESCRIPTION | |
config.status: creating src/library/tcltk/Makefile | |
config.status: creating src/library/tcltk/src/Makefile | |
config.status: creating src/library/tools/DESCRIPTION | |
config.status: creating src/library/tools/Makefile | |
config.status: creating src/library/tools/src/Makefile | |
config.status: creating src/library/utils/DESCRIPTION | |
config.status: creating src/library/utils/Makefile | |
config.status: creating src/main/Makefile | |
config.status: creating src/modules/Makefile | |
config.status: creating src/modules/X11/Makefile | |
config.status: creating src/modules/internet/Makefile | |
config.status: creating src/modules/lapack/Makefile | |
config.status: creating src/modules/vfonts/Makefile | |
config.status: creating src/nmath/Makefile | |
config.status: creating src/nmath/standalone/Makefile | |
config.status: creating src/scripts/Makefile | |
config.status: creating src/scripts/R.sh | |
config.status: creating src/scripts/Rcmd | |
config.status: creating src/scripts/f77_f2c | |
config.status: creating src/scripts/mkinstalldirs | |
config.status: creating src/scripts/pager | |
config.status: creating src/unix/Makefile | |
config.status: creating tests/Makefile | |
config.status: creating tests/Embedding/Makefile | |
config.status: creating tests/Examples/Makefile | |
config.status: creating tests/Native/Makefile | |
config.status: creating tools/Makefile | |
config.status: creating src/include/config.h | |
config.status: executing libtool commands | |
config.status: executing po-directories commands | |
config.status: creating po/POTFILES | |
config.status: creating po/Makefile | |
config.status: executing stamp-h commands | |
R is now configured for x86_64-apple-darwin12.2.0 | |
Source directory: . | |
Installation directory: /usr/local/Cellar/r/2.15.2 | |
C compiler: cc -g -O2 | |
Fortran 77 compiler: /usr/local/bin/gfortran | |
C++ compiler: c++ -g -O2 | |
Fortran 90/95 compiler: /usr/local/bin/gfortran | |
Obj-C compiler: gcc -g -O2 -fobjc-exceptions | |
Interfaces supported: X11, aqua, tcltk | |
External libraries: readline, ICU, lzma | |
Additional capabilities: PNG, JPEG, TIFF, NLS, cairo | |
Options enabled: framework, shared BLAS, R profiling, Java | |
Recommended packages: yes | |
configure: WARNING: you cannot build PDF versions of the R manuals | |
configure: WARNING: you cannot build PDF versions of vignettes and help pages |
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