Fiji bug #528 (http://fiji.sc/bugzilla/show_bug.cgi?id=528)

go.sh

IJ=/Applications/Science/Fiji.app/Contents/MacOS/ImageJ-macosx
PATH=/Users/curtis/Desktop
$IJ -macro $PATH/macro1.ijm
read -n1 -r -p "Press any key to continue..." key
$IJ -macro $PATH/macro2.ijm

macro1.ijm

out = "/Users/curtis/Desktop/image1.tif";
saveAs("Tiff", out);
//args = "save=[&out] compression=Uncompressed";
//run("Bio-Formats Exporter", args);

macro2.ijm

out = "/Users/curtis/Desktop/image2.tif";
saveAs("Tiff", out);
//args = "save=[&out] compression=Uncompressed";
//run("Bio-Formats Exporter", args);