mboisson/limix-bgen-3.0.3-GCCcore-9.3.0_partial.log

## limix-bgen-3.0.3-GCCcore-9.3.0_partial.log
ucx/1.8.0
/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:
admixture/1.3.0
annovar/2017Jul16
ascp/3.5.4
bbmap/38.86
bioperl/1.7.7
bolt-lmm/2.3.4
cudacore/.10.2.89
cudacore/.11.0.2
eigen/3.3.7
expat/2.2.9
fastqc/0.11.9
foss/.2020a
gatk/4.1.8.0
gatk/4.1.8.1
gcc/8.4.0
gcc/9.3.0
gcccore/.8.4.0
gcccore/.9.3.0
gcccorecuda/.2019.6.102
gcccorecuda/.2020a
gcccoremkl/.2020a
gcccuda/.2019.6.102
gcccuda/.2020a
git-annex/8.20200810
gmkl/.2020a
gmklc/.2020a
gomkl/.2020a
gomklc/.2020a
gompi/.2020a
gompic/.2020a
iccifortcuda/.2020a
iimkl/.2020a
iimklc/.2020a
iimpi/.2020a
imkl/2020.1.217
intel/.2020a
intel/2020.1.217
iomkl/.2020a
iomklc/.2020a
iompi/.2020a
iompic/.2020a
ispc/1.10.0
ispc/1.13.0
java/11(@java/11.0.2)
java/11.0.2
java/13(@java/13.0.2)
java/13.0.2
libffi/3.3
perl/5.30(@perl/5.30.2)
perl/5.30.2
picard/2.23.3
spark/3.0.0
udunits/2.2.26
xml-libxml/2.0205
xmlf90/1.5.4
/cvmfs/soft.computecanada.ca/custom/modules:
arch/avx
arch/avx2
arch/avx512
arch/sse3
CCconfig
gentoo/2019
gentoo/2020
librt-compat/centos7
nixpkgs/16.09
singularity/2.3
singularity/2.4
singularity/2.5
singularity/2.6
singularity/3.1
singularity/3.2
singularity/3.3
singularity/3.4
singularity/3.5
StdEnv/2016.4
StdEnv/2018.3
StdEnv/2020

== 2020-08-24 14:08:58,278 modules.py:1342 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python --terse --show-hidden avail ' ran fine
== 2020-08-24 14:08:58,279 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-24 14:08:58,279 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2020-08-24 14:08:58,279 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-24 14:08:58,279 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2020-08-24 14:08:58,286 modules.py:478 DEBUG 'module available ' gave 774 answers: ['CCconfig', 'Core/admixture/1.3.0', 'Core/annovar/2017Jul16', 'Core/ascp/3.5.4', 'Core/bbmap/38.86', 'Core/binutils/2.34', 'Core/bioperl/1.7.7', 'Core/bolt-lmm/2.3.4', 'Core/cudacore/.10.2.89', 'Core/cudacore/.11.0.2', 'Core/eigen/3.3.7', 'Core/expat/2.2.9', 'Core/fastqc/0.11.9', 'Core/foss/.2020a', 'Core/gatk/4.1.8.0', 'Core/gatk/4.1.8.1', 'Core/gcc/8.4.0', 'Core/gcc/9.3.0', 'Core/gcccore/.8.4.0', 'Core/gcccore/.9.3.0', 'Core/gcccorecuda/.2019.6.102', 'Core/gcccorecuda/.2020a', 'Core/gcccoremkl/.2020a', 'Core/gcccuda/.2019.6.102', 'Core/gcccuda/.2020a', 'Core/git-annex/8', 'Core/git-annex/8.20200810', 'Core/gmkl/.2020a', 'Core/gmklc/.2020a', 'Core/gomkl/.2020a', 'Core/gomklc/.2020a', 'Core/gompi/.2020a', 'Core/gompic/.2020a', 'Core/iccifortcuda/.2020a', 'Core/iimkl/.2020a', 'Core/iimklc/.2020a', 'Core/iimpi/.2020a', 'Core/imkl/2020.1.217', 'Core/intel/.2020a', 'Core/intel/2020.1.217', 'Core/iomkl/.2020a', 'Core/iomklc/.2020a', 'Core/iompi/.2020a', 'Core/iompic/.2020a', 'Core/ispc/1.10.0', 'Core/ispc/1.13.0', 'Core/java/11.0.2', 'Core/java/13.0.2', 'Core/libffi/3.3', 'Core/openscad/2019.05', 'Core/perl/5.30.2', 'Core/picard/2.23.3', 'Core/spark/3.0.0', 'Core/udunits/2.2.26', 'Core/xml-libxml/2.0205', 'Core/xmlf90/1.5.4', 'StdEnv/2016.4', 'StdEnv/2018.3', 'StdEnv/2020', 'admixture/1.3.0', 'allinea-cpu', 'allinea-gpu', 'almosthere/1.0.10', 'angsd/0.933', 'annovar/2017Jul16', 'arch/avx', 'arch/avx2', 'arch/avx512', 'arch/sse3', 'argtable/2.13', 'arm-forge-cpu', 'arm-forge-gpu', 'ascp/3.5.4', 'avx/CUDA/gcc8/cuda10.2/openmpi/4.0.3', 'avx/Compiler/gcc8/cuda/10.2', 'avx/Compiler/gcc9/openmpi/4.0.3', 'avx/Compiler/intel2020/openmpi/4.0.3', 'avx/Core/bowtie2/2.4.1', 'avx/Core/libfabric/1.10.1', 'avx/Core/tbb/2020.2', 'avx/Core/ucx/1.8.0', 'avx2/CUDA/cuda10.2/libfabric/1.10.1', 'avx2/CUDA/cuda10.2/ucx/1.8.0', 'avx2/CUDA/cuda11.0/libfabric/1.10.1', 'avx2/CUDA/cuda11.0/ucx/1.8.0', 'avx2/CUDA/gcc8/cuda10.2/openmpi/4.0.3', 'avx2/CUDA/gcc9/cuda11.0/arrow/0.17.1', 'avx2/CUDA/gcc9/cuda11.0/arrow/1.0.0', 'avx2/CUDA/gcc9/cuda11.0/openmpi/4.0.3', 'avx2/CUDA/intel2020/cuda11.0/openmpi/4.0.3', 'avx2/Compiler/gcc8/cuda/10.2', 'avx2/Compiler/gcc9/alpscore/2.2.0', 'avx2/Compiler/gcc9/ants/2.3.2', 'avx2/Compiler/gcc9/armadillo/9.900.2', 'avx2/Compiler/gcc9/arpack-ng/3.7.0', 'avx2/Compiler/gcc9/arrow/0.17.1', 'avx2/Compiler/gcc9/arrow/1.0.0', 'avx2/Compiler/gcc9/atomicrex/1.0.20181114', 'avx2/Compiler/gcc9/bayesass/3.0.4', 'avx2/Compiler/gcc9/bcftools/1.10.2', 'avx2/Compiler/gcc9/bcftools/1.9', 'avx2/Compiler/gcc9/beagle-lib/3.1.2', 'avx2/Compiler/gcc9/beast/2.6.3', 'avx2/Compiler/gcc9/beef/0.1.1', 'avx2/Compiler/gcc9/bgcdist/1.03', 'avx2/Compiler/gcc9/biobloomtools/2.3.2-20200731', 'avx2/Compiler/gcc9/blasr/5.3.3', 'avx2/Compiler/gcc9/blasr_libcpp/5.3.4', 'avx2/Compiler/gcc9/blast+/2.10.1', 'avx2/Compiler/gcc9/boost/1.72.0', 'avx2/Compiler/gcc9/bracken/2.6.0', 'avx2/Compiler/gcc9/bufrlib/11.3.0.2', 'avx2/Compiler/gcc9/cuda/11.0', 'avx2/Compiler/gcc9/embree/3.11.0', 'avx2/Compiler/gcc9/fftw/3.3.8', 'avx2/Compiler/gcc9/fpocket/3.1.4.2', 'avx2/Compiler/gcc9/gdal/3.0.4', 'avx2/Compiler/gcc9/geos/3.8.1', 'avx2/Compiler/gcc9/gmsh/4.6.0', 'avx2/Compiler/gcc9/gsl/1.16', 'avx2/Compiler/gcc9/gsl/2.6', 'avx2/Compiler/gcc9/hdf5/1.10.6', 'avx2/Compiler/gcc9/ioapi/3.2-2020111', 'avx2/Compiler/gcc9/kraken2/2.0.9-beta', 'avx2/Compiler/gcc9/libint/1.1.6', 'avx2/Compiler/gcc9/libint/2.4.2', 'avx2/Compiler/gcc9/libxc/3.0.1', 'avx2/Compiler/gcc9/libxc/4.3.4', 'avx2/Compiler/gcc9/libxc/5.0.0', 'avx2/Compiler/gcc9/libxsmm/1.16.1', 'avx2/Compiler/gcc9/mrtrix/3.0.1', 'avx2/Compiler/gcc9/netcdf-c++4/4.3.1', 'avx2/Compiler/gcc9/netcdf-fortran/4.5.2', 'avx2/Compiler/gcc9/netcdf/4.7.4', 'avx2/Compiler/gcc9/nlopt/2.6.1', 'avx2/Compiler/gcc9/octave/5.2.0', 'avx2/Compiler/gcc9/openblas/0.3.9', 'avx2/Compiler/gcc9/openimagedenoise/1.2.2', 'avx2/Compiler/gcc9/openimageio/2.1.17.0', 'avx2/Compiler/gcc9/openmpi/4.0.3', 'avx2/Compiler/gcc9/openvdb/7.0.0', 'avx2/Compiler/gcc9/openvkl/0.10.0', 'avx2/Compiler/gcc9/ospray/1.8.5', 'avx2/Compiler/gcc9/ospray/2.2.0', 'avx2/Compiler/gcc9/pbbam/1.0.7', 'avx2/Compiler/gcc9/pbcopper/1.4.0', 'avx2/Compiler/gcc9/qgis/3.10.6', 'avx2/Compiler/gcc9/stringtie/2.1.3', 'avx2/Compiler/gcc9/suitesparse/5.7.1', 'avx2/Compiler/gcc9/superlu/5.2.1', 'avx2/Compiler/gcc9/thrift/0.13.0', 'avx2/Compiler/gcc9/vtk/9.0.1', 'avx2/Compiler/intel2020/armadillo/9.900.2', 'avx2/Compiler/intel2020/arpack-ng/3.7.0', 'avx2/Compiler/intel2020/atomicrex/1.0.20181114', 'avx2/Compiler/intel2020/bayesass/3.0.4', 'avx2/Compiler/intel2020/baypass/2.1', 'avx2/Compiler/intel2020/bcftools/1.10.2', 'avx2/Compiler/intel2020/bcftools/1.9', 'avx2/Compiler/intel2020/beagle-lib/3.1.2', 'avx2/Compiler/intel2020/beast/2.6.3', 'avx2/Compiler/intel2020/beef/0.1.1', 'avx2/Compiler/intel2020/bgcdist/1.03', 'avx2/Compiler/intel2020/blasr_libcpp/5.3.4', 'avx2/Compiler/intel2020/boltztrap/1.2.5', 'avx2/Compiler/intel2020/boost/1.72.0', 'avx2/Compiler/intel2020/bufrlib/11.3.0.2', 'avx2/Compiler/intel2020/cgal/4.14.3', 'avx2/Compiler/intel2020/cuda/11.0', 'avx2/Compiler/intel2020/embree/3.11.0', 'avx2/Compiler/intel2020/etsf_io/1.0.4', 'avx2/Compiler/intel2020/fftw/3.3.8', 'avx2/Compiler/intel2020/gmsh/4.6.0', 'avx2/Compiler/intel2020/gsl/1.16', 'avx2/Compiler/intel2020/gsl/2.6', 'avx2/Compiler/intel2020/hdf5/1.10.6', 'avx2/Compiler/intel2020/intelmpi/2019.7.217', 'avx2/Compiler/intel2020/libgridxc/0.8.0', 'avx2/Compiler/intel2020/libint/1.1.6', 'avx2/Compiler/intel2020/libint/2.4.2', 'avx2/Compiler/intel2020/libint/2.6.0', 'avx2/Compiler/intel2020/libxc/3.0.1', 'avx2/Compiler/intel2020/libxc/4.3.4', 'avx2/Compiler/intel2020/libxc/5.0.0', 'avx2/Compiler/intel2020/libxsmm/1.16.1', 'avx2/Compiler/intel2020/mrtrix/3.0.1', 'avx2/Compiler/intel2020/netcdf-c++4/4.3.1', 'avx2/Compiler/intel2020/netcdf-fortran/4.5.2', 'avx2/Compiler/intel2020/netcdf/4.7.4', 'avx2/Compiler/intel2020/nlopt/2.6.1', 'avx2/Compiler/intel2020/octave/5.2.0', 'avx2/Compiler/intel2020/openimagedenoise/1.2.2', 'avx2/Compiler/intel2020/openimageio/2.1.17.0', 'avx2/Compiler/intel2020/openmpi/4.0.3', 'avx2/Compiler/intel2020/openvdb/7.0.0', 'avx2/Compiler/intel2020/openvkl/0.10.0', 'avx2/Compiler/intel2020/ospray/1.8.5', 'avx2/Compiler/intel2020/ospray/2.2.0', 'avx2/Compiler/intel2020/pbbam/1.0.7', 'avx2/Compiler/intel2020/pbcopper/1.4.0', 'avx2/Compiler/intel2020/suitesparse/5.7.1', 'avx2/Compiler/intel2020/superlu/5.2.1', 'avx2/Core/almosthere/1.0.10', 'avx2/Core/angsd/0.933', 'avx2/Core/argtable/2.13', 'avx2/Core/bamm/2.5.0', 'avx2/Core/bamtools/2.5.1', 'avx2/Core/bamutil/1.0.14', 'avx2/Core/barrnap/0.9', 'avx2/Core/bayescan/2.1', 'avx2/Core/bedops/2.4.39', 'avx2/Core/bedtools/2.29.2', 'avx2/Core/biopp/2.4.1', 'avx2/Core/bismark/0.22.3', 'avx2/Core/blat/3.5', 'avx2/Core/blitz++/1.0.2', 'avx2/Core/blosc/1.17.1', 'avx2/Core/bowtie2/2.4.1', 'avx2/Core/breseq/0.35.2', 'avx2/Core/bwa/0.7.17', 'avx2/Core/canu/2.0', 'avx2/Core/cfitsio/3.41', 'avx2/Core/cfitsio/3.48', 'avx2/Core/clang/9.0.1', 'avx2/Core/cram/0.7', 'avx2/Core/double-conversion/3.1.5', 'avx2/Core/fastp/0.20.1', 'avx2/Core/freexl/1.0.5', 'avx2/Core/geos/3.7.3', 'avx2/Core/geos/3.8.1', 'avx2/Core/glfw/3.3.2', 'avx2/Core/glpk/4.65', 'avx2/Core/gnuplot/5.2.8', 'avx2/Core/googletest/1.10.0', 'avx2/Core/hmmer/3.2.1', 'avx2/Core/htslib/1.10.2', 'avx2/Core/htslib/1.9', 'avx2/Core/ipykernel/.2020a', 'avx2/Core/ipython-kernel/2.7', 'avx2/Core/ipython-kernel/3.6', 'avx2/Core/ipython-kernel/3.7', 'avx2/Core/ipython-kernel/3.8', 'avx2/Core/jasper/2.0.16', 'avx2/Core/julia/1.4.1', 'avx2/Core/kentutils/401', 'avx2/Core/libcerf/1.13', 'avx2/Core/libevent/2.1.11', 'avx2/Core/libfabric/1.10.1', 'avx2/Core/libgd/2.3.0', 'avx2/Core/libgeotiff/1.5.1', 'avx2/Core/libspatialindex/1.8.5', 'avx2/Core/libspatialite/4.3.0a', 'avx2/Core/liknorm/1.5.1', 'avx2/Core/limix-bgen/3.0.3', 'avx2/Core/llvm/9.0.1', 'avx2/Core/lmdb/0.9.24', 'avx2/Core/mafft/7.471', 'avx2/Core/mariadb/10.4.13', 'avx2/Core/metis/5.1.0', 'avx2/Core/muparser/2.2.5', 'avx2/Core/nspr/4.25', 'avx2/Core/nss/3.51', 'avx2/Core/ntedit/1.3.2', 'avx2/Core/occt/7.4.0', 'avx2/Core/openexr/2.5.2', 'avx2/Core/pcre2/10.34', 'avx2/Core/postgresql/12.4', 'avx2/Core/proj/6.3.2', 'avx2/Core/proj/7.0.0', 'avx2/Core/proj/7.0.1', 'avx2/Core/protobuf/3.12.3', 'avx2/Core/python/2.7.18', 'avx2/Core/python/3.6.10', 'avx2/Core/python/3.7.7', 'avx2/Core/python/3.8.2', 'avx2/Core/qca/2.3.0', 'avx2/Core/qhull/2019.1', 'avx2/Core/qjson/0.9.0', 'avx2/Core/qrupdate/1.1.2', 'avx2/Core/qscintilla/2.11.2', 'avx2/Core/qt/5.12.8', 'avx2/Core/qt5webkit/5.212.0-alpha4', 'avx2/Core/qtkeychain/0.9.1', 'avx2/Core/qwt/6.1.4', 'avx2/Core/qwtpolar/1.1.1', 'avx2/Core/r/4.0.0', 'avx2/Core/re2c/1.3', 'avx2/Core/rkcommon/1.4.2', 'avx2/Core/ruby/2.7.1', 'avx2/Core/sagemath/9.1', 'avx2/Core/samtools/1.10', 'avx2/Core/scipy-stack/2020a', 'avx2/Core/sdsl/2.1.1-20191211', 'avx2/Core/snappy/1.1.8', 'avx2/Core/spades/3.14.1', 'avx2/Core/sparsehash/2.0.4', 'avx2/Core/star/2.7.5a', 'avx2/Core/swig/4.0.1', 'avx2/Core/tbb/2020.2', 'avx2/Core/ucx/1.8.0', 'avx2/MPI/gcc9/cuda11.0/openmpi4/mpi4py/3.0.3', 'avx2/MPI/gcc9/openmpi4/adol-c/2.7.2', 'avx2/MPI/gcc9/openmpi4/boost-mpi/1.72.0', 'avx2/MPI/gcc9/openmpi4/fftw-mpi/3.3.8', 'avx2/MPI/gcc9/openmpi4/glost/0.3.1', 'avx2/MPI/gcc9/openmpi4/hdf5-mpi/1.10.6', 'avx2/MPI/gcc9/openmpi4/libgridxc-mpi/0.8.0', 'avx2/MPI/gcc9/openmpi4/mafft-mpi/7.471', 'avx2/MPI/gcc9/openmpi4/mpi4py/3.0.3', 'avx2/MPI/gcc9/openmpi4/netcdf-c++4-mpi/4.3.1', 'avx2/MPI/gcc9/openmpi4/netcdf-fortran-mpi/4.5.2', 'avx2/MPI/gcc9/openmpi4/netcdf-mpi/4.7.4', 'avx2/MPI/gcc9/openmpi4/paraview-offscreen-gpu/5.8.0', 'avx2/MPI/gcc9/openmpi4/paraview-offscreen/5.8.0', 'avx2/MPI/gcc9/openmpi4/paraview/5.8.0', 'avx2/MPI/gcc9/openmpi4/petsc/3.12.4', 'avx2/MPI/gcc9/openmpi4/petsc/3.13.3', 'avx2/MPI/gcc9/openmpi4/plumed/2.6.1', 'avx2/MPI/gcc9/openmpi4/scalapack/2.1.0', 'avx2/MPI/gcc9/openmpi4/scotch/6.0.9', 'avx2/MPI/gcc9/openmpi4/slepc/3.12.2', 'avx2/MPI/gcc9/openmpi4/sundials/5.3.0', 'avx2/MPI/gcc9/openmpi4/vtk-mpi/9.0.1', 'avx2/MPI/intel2020/cuda11.0/openmpi4/mpi4py/3.0.3', 'avx2/MPI/intel2020/openmpi4/adol-c/2.7.2', 'avx2/MPI/intel2020/openmpi4/boost-mpi/1.72.0', 'avx2/MPI/intel2020/openmpi4/cfour-mpi/2.1', 'avx2/MPI/intel2020/openmpi4/elpa/2020.05.001', 'avx2/MPI/intel2020/openmpi4/etsf_io-mpi/1.0.4', 'avx2/MPI/intel2020/openmpi4/fftw-mpi/3.3.8', 'avx2/MPI/intel2020/openmpi4/glost/0.3.1', 'avx2/MPI/intel2020/openmpi4/hdf5-mpi/1.10.6', 'avx2/MPI/intel2020/openmpi4/hpl/2.3', 'avx2/MPI/intel2020/openmpi4/libgridxc-mpi/0.8.0', 'avx2/MPI/intel2020/openmpi4/mpi4py/3.0.3', 'avx2/MPI/intel2020/openmpi4/netcdf-c++4-mpi/4.3.1', 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'singularity/3.5', 'snappy/1.1.8', 'spades/3.14.1', 'spark/3.0.0', 'sparsehash/2.0.4', 'star/2.7.5a', 'swig/4.0.1', 'tbb/2020.2', 'ucx/1.8.0', 'udunits/2.2.26', 'xml-libxml/2.0205', 'xmlf90/1.5.4']
== 2020-08-24 14:08:58,286 modules.py:482 DEBUG Cached result for 'module avail' with key '('MODULEPATH=/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/home/mboisson/.local/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', '--show-hidden')': ['CCconfig', 'Core/admixture/1.3.0', 'Core/annovar/2017Jul16', 'Core/ascp/3.5.4', 'Core/bbmap/38.86', 'Core/binutils/2.34', 'Core/bioperl/1.7.7', 'Core/bolt-lmm/2.3.4', 'Core/cudacore/.10.2.89', 'Core/cudacore/.11.0.2', 'Core/eigen/3.3.7', 'Core/expat/2.2.9', 'Core/fastqc/0.11.9', 'Core/foss/.2020a', 'Core/gatk/4.1.8.0', 'Core/gatk/4.1.8.1', 'Core/gcc/8.4.0', 'Core/gcc/9.3.0', 'Core/gcccore/.8.4.0', 'Core/gcccore/.9.3.0', 'Core/gcccorecuda/.2019.6.102', 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== 2020-08-24 14:08:58,287 modules.py:606 INFO Checking whether Core/binutils/2.34 exists...
== 2020-08-24 14:08:58,287 modules.py:611 INFO Module Core/binutils/2.34 exists (found in list of available modules)
== 2020-08-24 14:08:58,287 modules.py:634 INFO Result for existence check of Core/binutils/2.34 module: True
== 2020-08-24 14:08:58,287 modules.py:606 INFO Checking whether avx2/Core/almosthere/1.0.10 exists...
== 2020-08-24 14:08:58,287 modules.py:611 INFO Module avx2/Core/almosthere/1.0.10 exists (found in list of available modules)
== 2020-08-24 14:08:58,287 modules.py:634 INFO Result for existence check of avx2/Core/almosthere/1.0.10 module: True
== 2020-08-24 14:08:58,287 modules.py:606 INFO Checking whether Core/gcccore/.9.3.0 exists...
== 2020-08-24 14:08:58,287 modules.py:618 INFO Checking whether hidden module Core/gcccore/.9.3.0 exists via 'show'...
== 2020-08-24 14:08:58,287 modules.py:550 DEBUG Checking whether Core/gcccore/.9.3.0 exists based on output of 'module show'
== 2020-08-24 14:08:58,287 modules.py:696 DEBUG Found cached result for 'module show Core/gcccore/.9.3.0' with key '('MODULEPATH=/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/home/mboisson/.local/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', 'Core/gcccore/.9.3.0')': ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...).


More information
================
 - Homepage: https://gcc.gnu.org/
]])
whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...).")
whatis("Homepage: https://gcc.gnu.org/")
whatis("URL: https://gcc.gnu.org/")
conflict("gcccore")
prepend_path("CMAKE_LIBRARY_PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64")
prepend_path("CMAKE_PREFIX_PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0")
prepend_path("MANPATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/share/man")
prepend_path("PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin")
setenv("EBROOTGCCCORE","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0")
setenv("EBVERSIONGCCCORE","9.3.0")
setenv("EBDEVELGCCCORE","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/easybuild/Core-gcccore-.9.3.0-easybuild-devel")
add_property("type_","tools")


== 2020-08-24 14:08:58,288 modules.py:560 DEBUG Checking line '------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' to determine whether Core/gcccore/.9.3.0 exists...
== 2020-08-24 14:08:58,288 modules.py:564 DEBUG Treating line '------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' as whitespace, so skipping it
== 2020-08-24 14:08:58,288 modules.py:560 DEBUG Checking line '   /cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:' to determine whether Core/gcccore/.9.3.0 exists...
== 2020-08-24 14:08:58,288 modules.py:588 DEBUG Result for existence check of Core/gcccore/.9.3.0 based on 'module show' output line '   /cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:': True
== 2020-08-24 14:08:58,288 modules.py:634 INFO Result for existence check of Core/gcccore/.9.3.0 module: True
== 2020-08-24 14:08:58,288 toolchain.py:667 DEBUG Loading toolchain module and dependencies...
== 2020-08-24 14:08:58,288 config.py:569 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /home/mboisson/.local/easybuild/modules/2020
== 2020-08-24 14:08:58,288 filetools.py:1523 DEBUG Not creating existing path /home/mboisson/.local/easybuild/modules/2020/Core
== 2020-08-24 14:08:58,289 modules.py:791 DEBUG Current MODULEPATH: /opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/home/mboisson/.local/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2020-08-24 14:08:58,289 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2020-08-24 14:08:58,289 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2020-08-24 14:08:58,289 modules.py:802 DEBUG Running module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python use /home/mboisson/.local/easybuild/modules/2020/Core' from /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3
== 2020-08-24 14:08:58,475 modules.py:809 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python use /home/mboisson/.local/easybuild/modules/2020/Core': stdout: import os
os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/opt/software/modulefiles:1;/home/mboisson/.local/easybuild/modules/2020/Core:2;/home/mboisson/.local/easybuild/modules/2020:14;/cvmfs/soft.computecanada.ca/easybuild/modules/2020:1;/home/mboisson/.local/easybuild/modules/2020/avx2/Core:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:1;/cvmfs/soft.computecanada.ca/custom/modules:1";
os.environ["MODULEPATH"] = "/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "ZU1QQVRIIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0=";
os.environ["_ModuleTable_Sz_"] = "3";
_mlstatus = True
; stderr:
== 2020-08-24 14:08:58,476 modules.py:1342 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python use /home/mboisson/.local/easybuild/modules/2020/Core' ran fine
== 2020-08-24 14:08:58,476 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-24 14:08:58,476 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2020-08-24 14:08:58,476 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-24 14:08:58,476 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2020-08-24 14:08:58,477 modules.py:352 DEBUG $MODULEPATH after set_mod_paths: /opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2020-08-24 14:08:58,477 toolchain.py:587 DEBUG Loading module for toolchain: gcccore/.9.3.0
== 2020-08-24 14:08:58,477 modules.py:791 DEBUG Current MODULEPATH: /opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2020-08-24 14:08:58,477 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2020-08-24 14:08:58,477 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2020-08-24 14:08:58,478 modules.py:802 DEBUG Running module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python --terse list' from /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3
== 2020-08-24 14:08:58,519 modules.py:809 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python --terse list': stdout: import os
os.environ["MODULEPATH"] = "/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "ZU1QQVRIIl09Ii9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0=";
os.environ["_ModuleTable_Sz_"] = "3";
_mlstatus = True
; stderr: gentoo/2020

== 2020-08-24 14:08:58,519 modules.py:1342 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2020-08-24 14:08:58,520 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-24 14:08:58,520 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2020-08-24 14:08:58,520 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-24 14:08:58,520 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2020-08-24 14:08:58,520 modules.py:791 DEBUG Current MODULEPATH: /opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2020-08-24 14:08:58,521 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2020-08-24 14:08:58,521 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2020-08-24 14:08:58,521 modules.py:802 DEBUG Running module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load gcccore/.9.3.0' from /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3
== 2020-08-24 14:08:58,712 modules.py:809 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load gcccore/.9.3.0': stdout: import os
os.environ["CMAKE_LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64";
os.environ["CMAKE_PREFIX_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0";
os.environ["EBDEVELGCCCORE"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/easybuild/Core-gcccore-.9.3.0-easybuild-devel";
os.environ["EBROOTGCCCORE"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0";
os.environ["EBVERSIONGCCCORE"] = "9.3.0";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "gentoo/2020:1;gcccore/.9.3.0:1";
os.environ["LOADEDMODULES"] = "gentoo/2020:gcccore/.9.3.0";
os.environ["MANPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/share/man:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/share/gcc-data/x86_64-pc-linux-gnu/9.3.0/man:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/share/binutils-data/x86_64-pc-linux-gnu/2.33.1/man:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/share/man:/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/share/man::";
os.environ["MODULEPATH"] = "/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/bin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/bin";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/gentoo/2020.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/gentoo/2020.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "Ii9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDIwL2F2eDIvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAyMC9hdngyL0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMjAvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfQ==";
os.environ["_ModuleTable_Sz_"] = "3";
_mlstatus = True
; stderr:
== 2020-08-24 14:08:58,712 modules.py:1342 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load gcccore/.9.3.0' ran fine
== 2020-08-24 14:08:58,713 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-24 14:08:58,713 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2020-08-24 14:08:58,713 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-24 14:08:58,713 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2020-08-24 14:08:58,713 toolchain.py:617 DEBUG Loading modules for dependencies: ['binutils/2.34', 'almosthere/1.0.10']
== 2020-08-24 14:08:58,713 modules.py:791 DEBUG Current MODULEPATH: /opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2020-08-24 14:08:58,714 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2020-08-24 14:08:58,714 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2020-08-24 14:08:58,714 modules.py:802 DEBUG Running module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python --terse list' from /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3
== 2020-08-24 14:08:58,757 modules.py:809 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python --terse list': stdout: import os
os.environ["MODULEPATH"] = "/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "Ii9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDIwL2F2eDIvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAyMC9hdngyL0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMjAvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfQ==";
os.environ["_ModuleTable_Sz_"] = "3";
_mlstatus = True
; stderr: gentoo/2020
gcccore/.9.3.0

== 2020-08-24 14:08:58,757 modules.py:1342 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2020-08-24 14:08:58,758 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-24 14:08:58,758 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2020-08-24 14:08:58,758 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-24 14:08:58,758 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2020-08-24 14:08:58,758 modules.py:791 DEBUG Current MODULEPATH: /opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2020-08-24 14:08:58,758 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2020-08-24 14:08:58,759 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2020-08-24 14:08:58,759 modules.py:802 DEBUG Running module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load binutils/2.34' from /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3
== 2020-08-24 14:08:58,951 modules.py:809 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load binutils/2.34': stdout: import os
os.environ["CMAKE_PREFIX_PATH"] = "/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34:/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0";
os.environ["CPATH"] = "/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/include";
os.environ["EBDEVELBINUTILS"] = "/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/easybuild/Core-binutils-2.34-easybuild-devel";
os.environ["EBROOTBINUTILS"] = "/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34";
os.environ["EBVERSIONBINUTILS"] = "2.34";
os.environ["LIBRARY_PATH"] = "/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/lib";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "gentoo/2020:1;gcccore/.9.3.0:1;binutils/2.34:1";
os.environ["LOADEDMODULES"] = "gentoo/2020:gcccore/.9.3.0:binutils/2.34";
os.environ["MANPATH"] = "/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/share/man:/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/share/man:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/share/gcc-data/x86_64-pc-linux-gnu/9.3.0/man:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/share/binutils-data/x86_64-pc-linux-gnu/2.33.1/man:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/share/man:/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/share/man::";
os.environ["MODULEPATH"] = "/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["PATH"] = "/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/bin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/bin";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/gentoo/2020.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:1;/home/mboisson/.local/easybuild/modules/2020/Core/binutils/2.34.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/gentoo/2020.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:/home/mboisson/.local/easybuild/modules/2020/Core/binutils/2.34.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "b3JlIiwiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2N1c3RvbS9tb2R1bGVzIix9";
os.environ["_ModuleTable_Sz_"] = "4";
_mlstatus = True
; stderr:
== 2020-08-24 14:08:58,952 modules.py:1342 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load binutils/2.34' ran fine
== 2020-08-24 14:08:58,954 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-24 14:08:58,954 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2020-08-24 14:08:58,954 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-24 14:08:58,954 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2020-08-24 14:08:58,954 modules.py:791 DEBUG Current MODULEPATH: /opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules
== 2020-08-24 14:08:58,955 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2020-08-24 14:08:58,955 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2020-08-24 14:08:58,955 modules.py:802 DEBUG Running module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load almosthere/1.0.10' from /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3
== 2020-08-24 14:08:59,151 modules.py:809 DEBUG Output of module command '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load almosthere/1.0.10': stdout: import os
os.environ["CMAKE_PREFIX_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10:/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34:/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0";
os.environ["CPATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/include:/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/include";
os.environ["EBDEVELALMOSTHERE"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/easybuild/avx2-Core-almosthere-1.0.10-easybuild-devel";
os.environ["EBROOTALMOSTHERE"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10";
os.environ["EBVERSIONALMOSTHERE"] = "1.0.10";
os.environ["LIBRARY_PATH"] = "/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/lib:/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/lib";
os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "gentoo/2020:1;gcccore/.9.3.0:1;binutils/2.34:1;almosthere/1.0.10:1";
os.environ["LOADEDMODULES"] = "gentoo/2020:gcccore/.9.3.0:binutils/2.34:almosthere/1.0.10";
os.environ["MODULEPATH"] = "/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules";
os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/gentoo/2020.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:1;/home/mboisson/.local/easybuild/modules/2020/Core/binutils/2.34.lua:1;/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core/almosthere/1.0.10.lua:1";
os.environ["_LMFILES_"] = "/cvmfs/soft.computecanada.ca/custom/modules/gentoo/2020.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:/home/mboisson/.local/easybuild/modules/2020/Core/binutils/2.34.lua:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core/almosthere/1.0.10.lua";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "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";
os.environ["_ModuleTable004_"] = "MjAyMCIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAyMCIsIi9ob21lL21ib2lzc29uLy5sb2NhbC9lYXN5YnVpbGQvbW9kdWxlcy8yMDIwL2F2eDIvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvZWFzeWJ1aWxkL21vZHVsZXMvMjAyMC9hdngyL0NvcmUiLCIvY3ZtZnMvc29mdC5jb21wdXRlY2FuYWRhLmNhL2Vhc3lidWlsZC9tb2R1bGVzLzIwMjAvQ29yZSIsIi9jdm1mcy9zb2Z0LmNvbXB1dGVjYW5hZGEuY2EvY3VzdG9tL21vZHVsZXMiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsfQ==";
os.environ["_ModuleTable_Sz_"] = "4";
_mlstatus = True
; stderr:
== 2020-08-24 14:08:59,152 modules.py:1342 DEBUG Output found in stdout, seems like '/cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod python load almosthere/1.0.10' ran fine
== 2020-08-24 14:08:59,152 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2020-08-24 14:08:59,152 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to  (previous value: '')
== 2020-08-24 14:08:59,152 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2020-08-24 14:08:59,153 environment.py:97 INFO Environment variable LD_PRELOAD set to  (previous value: '')
== 2020-08-24 14:08:59,153 modules.py:606 INFO Checking whether gcccore/.9.3.0 exists...
== 2020-08-24 14:08:59,153 modules.py:618 INFO Checking whether hidden module gcccore/.9.3.0 exists via 'show'...
== 2020-08-24 14:08:59,153 modules.py:550 DEBUG Checking whether gcccore/.9.3.0 exists based on output of 'module show'
== 2020-08-24 14:08:59,153 modules.py:696 DEBUG Found cached result for 'module show gcccore/.9.3.0' with key '('MODULEPATH=/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', 'gcccore/.9.3.0')': ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...).


More information
================
 - Homepage: https://gcc.gnu.org/
]])
whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...).")
whatis("Homepage: https://gcc.gnu.org/")
whatis("URL: https://gcc.gnu.org/")
conflict("gcccore")
prepend_path("CMAKE_LIBRARY_PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64")
prepend_path("CMAKE_PREFIX_PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0")
prepend_path("MANPATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/share/man")
prepend_path("PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin")
setenv("EBROOTGCCCORE","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0")
setenv("EBVERSIONGCCCORE","9.3.0")
setenv("EBDEVELGCCCORE","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/easybuild/Core-gcccore-.9.3.0-easybuild-devel")
add_property("type_","tools")


== 2020-08-24 14:08:59,153 modules.py:560 DEBUG Checking line '------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' to determine whether gcccore/.9.3.0 exists...
== 2020-08-24 14:08:59,153 modules.py:564 DEBUG Treating line '------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' as whitespace, so skipping it
== 2020-08-24 14:08:59,153 modules.py:560 DEBUG Checking line '   /cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:' to determine whether gcccore/.9.3.0 exists...
== 2020-08-24 14:08:59,154 modules.py:588 DEBUG Result for existence check of gcccore/.9.3.0 based on 'module show' output line '   /cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:': True
== 2020-08-24 14:08:59,154 modules.py:634 INFO Result for existence check of gcccore/.9.3.0 module: True
== 2020-08-24 14:08:59,154 modules.py:696 DEBUG Found cached result for 'module show gcccore/.9.3.0' with key '('MODULEPATH=/opt/software/modulefiles:/home/mboisson/.local/easybuild/modules/2020/Core:/home/mboisson/.local/easybuild/modules/2020:/cvmfs/soft.computecanada.ca/easybuild/modules/2020:/home/mboisson/.local/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/avx2/Core:/cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core:/cvmfs/soft.computecanada.ca/custom/modules', 'lmod', 'gcccore/.9.3.0')': ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
   /cvmfs/soft.computecanada.ca/easybuild/modules/2020/Core/gcccore/.9.3.0.lua:
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
help([[
Description
===========
The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...).


More information
================
 - Homepage: https://gcc.gnu.org/
]])
whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
 as well as libraries for these languages (libstdc++, libgcj,...).")
whatis("Homepage: https://gcc.gnu.org/")
whatis("URL: https://gcc.gnu.org/")
conflict("gcccore")
prepend_path("CMAKE_LIBRARY_PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64")
prepend_path("CMAKE_PREFIX_PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0")
prepend_path("MANPATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/share/man")
prepend_path("PATH","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin")
setenv("EBROOTGCCCORE","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0")
setenv("EBVERSIONGCCCORE","9.3.0")
setenv("EBDEVELGCCCORE","/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/easybuild/Core-gcccore-.9.3.0-easybuild-devel")
add_property("type_","tools")


== 2020-08-24 14:08:59,154 toolchain.py:687 DEBUG List of toolchain dependencies from toolchain module: []
== 2020-08-24 14:08:59,154 toolchain.py:531 DEBUG Toolchain definition for {'name': 'GCCcore', 'version': '9.3.0', 'toolchain': {'name': 'system', 'version': ''}, 'versionsuffix': '', 'parsed': True, 'hidden': True, 'full_mod_name': 'Core/gcccore/.9.3.0', 'short_mod_name': 'gcccore/.9.3.0', 'system': True}: {'COMPILER': ['GCCcore']}
== 2020-08-24 14:08:59,154 toolchain.py:700 DEBUG List of toolchain elements from toolchain definition: set()
== 2020-08-24 14:08:59,154 toolchain.py:703 INFO List of toolchain dependency modules and toolchain definition match!
== 2020-08-24 14:08:59,156 compiler.py:351 INFO _set_optimal_architecture: using march=core-avx2 as optarch for x86_64.
== 2020-08-24 14:08:59,157 toolchain.py:799 DEBUG prepare: set additional variables onlymod=False
== 2020-08-24 14:08:59,158 toolchain.py:372 DEBUG get_software_root software root /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34 for binutils was found in environment
== 2020-08-24 14:08:59,158 toolchain.py:372 DEBUG get_software_root software root /cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10 for almosthere was found in environment
== 2020-08-24 14:08:59,158 variables.py:201 WARNING flags_for_subdirs: directory /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/lib64 was not found
== 2020-08-24 14:08:59,158 variables.py:201 WARNING flags_for_subdirs: directory /cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/lib64 was not found
== 2020-08-24 14:08:59,159 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CC to gcc
== 2020-08-24 14:08:59,159 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
== 2020-08-24 14:08:59,159 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
== 2020-08-24 14:08:59,159 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno
== 2020-08-24 14:08:59,159 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,159 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,159 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/include -I/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/include
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable CPPFLAGS set to -I/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/include -I/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/include (previously undefined)
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/include -I/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/include (previously undefined)
== 2020-08-24 14:08:59,160 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CXX to g++
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
== 2020-08-24 14:08:59,160 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,160 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F77 to gfortran
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
== 2020-08-24 14:08:59,160 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F90 to gfortran
== 2020-08-24 14:08:59,160 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
== 2020-08-24 14:08:59,161 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,161 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FC to gfortran
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
== 2020-08-24 14:08:59,161 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,161 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,161 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,161 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2020-08-24 14:08:59,162 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/lib -L/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable LDFLAGS set to -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/lib -L/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib (previously undefined)
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/lib -L/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/lib -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64 -L/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib (previously undefined)
== 2020-08-24 14:08:59,162 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2020-08-24 14:08:59,162 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=core-avx2
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=core-avx2 (previously undefined)
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=core-avx2 (previously undefined)
== 2020-08-24 14:08:59,162 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno
== 2020-08-24 14:08:59,162 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,163 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined)
== 2020-08-24 14:08:59,163 toolchain.py:850 DEBUG Using compiler cache tool 'ccache' for compilers: ['gcc', 'g++', 'gfortran', 'gfortran', 'gfortran']
== 2020-08-24 14:08:59,163 environment.py:97 INFO Environment variable CCACHE_DIR set to /cvmfs/local/ccache (previously undefined)
== 2020-08-24 14:08:59,163 environment.py:97 INFO Environment variable CCACHE_TEMPDIR set to /tmp/eb-7kjuy5vx/tmpzfhbhyp1 (previously undefined)
== 2020-08-24 14:08:59,163 filetools.py:456 INFO Command ccache found at /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/ccache
== 2020-08-24 14:08:59,163 environment.py:97 INFO Environment variable PATH set to /tmp/eb-7kjuy5vx/tmpjot3p78q:/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/bin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/bin (previous value: '/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin:/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin:/cvmfs/soft.computecanada.ca/easybuild/bin:/cvmfs/soft.computecanada.ca/custom/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin:/cvmfs/soft.computecanada.ca/gentoo/2020/sbin:/cvmfs/soft.computecanada.ca/gentoo/2020/bin')
== 2020-08-24 14:08:59,163 filetools.py:456 INFO Command gcc found at /tmp/eb-7kjuy5vx/tmpjot3p78q/gcc
== 2020-08-24 14:08:59,164 toolchain.py:730 DEBUG which(gcc): /tmp/eb-7kjuy5vx/tmpjot3p78q/gcc -> /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/ccache
== 2020-08-24 14:08:59,164 filetools.py:456 INFO Command g++ found at /tmp/eb-7kjuy5vx/tmpjot3p78q/g++
== 2020-08-24 14:08:59,164 toolchain.py:730 DEBUG which(g++): /tmp/eb-7kjuy5vx/tmpjot3p78q/g++ -> /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/ccache
== 2020-08-24 14:08:59,164 filetools.py:456 INFO Command gfortran found at /tmp/eb-7kjuy5vx/tmpjot3p78q/gfortran
== 2020-08-24 14:08:59,164 toolchain.py:730 DEBUG which(gfortran): /tmp/eb-7kjuy5vx/tmpjot3p78q/gfortran -> /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/ccache
== 2020-08-24 14:08:59,164 filetools.py:456 INFO Command gfortran found at /tmp/eb-7kjuy5vx/tmpjot3p78q/gfortran
== 2020-08-24 14:08:59,164 toolchain.py:730 DEBUG which(gfortran): /tmp/eb-7kjuy5vx/tmpjot3p78q/gfortran -> /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/ccache
== 2020-08-24 14:08:59,165 filetools.py:456 INFO Command gfortran found at /tmp/eb-7kjuy5vx/tmpjot3p78q/gfortran
== 2020-08-24 14:08:59,165 toolchain.py:730 DEBUG which(gfortran): /tmp/eb-7kjuy5vx/tmpjot3p78q/gfortran -> /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/ccache
== 2020-08-24 14:08:59,165 toolchain.py:732 INFO Commands symlinked to /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/ccache via /tmp/eb-7kjuy5vx/tmpjot3p78q: gcc, g++, gfortran, gfortran, gfortran
== 2020-08-24 14:08:59,165 toolchain.py:864 DEBUG Cached compilers (after preparing for ccache): {'g++', 'gcc', 'gfortran'}
== 2020-08-24 14:08:59,165 easyblock.py:1610 INFO Using /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3/ as start dir
== 2020-08-24 14:08:59,165 easyblock.py:1613 DEBUG Changed to real build directory /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3/ (start_dir)
== 2020-08-24 14:08:59,165 easyblock.py:3017 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2020-08-24 14:08:59,165 build_log.py:266 INFO configuring...
== 2020-08-24 14:08:59,165 easyblock.py:3025 INFO Starting configure step
== 2020-08-24 14:08:59,166 easyconfig.py:1599 INFO Generating template values...
== 2020-08-24 14:08:59,166 templates.py:163 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2b601dbcddd0>
== 2020-08-24 14:08:59,166 templates.py:190 DEBUG version found in easyconfig is 3.0.3
== 2020-08-24 14:08:59,166 templates.py:275 DEBUG name: bitbucket_account, config: %(namelower)s
== 2020-08-24 14:08:59,166 templates.py:275 DEBUG name: github_account, config: limix
== 2020-08-24 14:08:59,166 templates.py:275 DEBUG name: name, config: limix-bgen
== 2020-08-24 14:08:59,166 templates.py:275 DEBUG name: parallel, config: 8
== 2020-08-24 14:08:59,166 templates.py:275 DEBUG name: version, config: 3.0.3
== 2020-08-24 14:08:59,166 templates.py:275 DEBUG name: versionsuffix, config:
== 2020-08-24 14:08:59,167 templates.py:275 DEBUG name: versionprefix, config:
== 2020-08-24 14:08:59,167 easyconfig.py:1618 INFO Template values: arch='x86_64', bitbucket_account='limix-bgen', builddir='/tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0', github_account='limix', installdir='/home/mboisson/.local/easybuild/software/2020/avx2/Core/limix-bgen/3.0.3', name='limix-bgen', nameletter='l', nameletterlower='l', namelower='limix-bgen', parallel='8', toolchain_name='GCCcore', toolchain_version='9.3.0', version='3.0.3', version_major='3', version_major_minor='3.0', version_minor='0', versionprefix='', versionsuffix=''
== 2020-08-24 14:08:59,167 hooks.py:167 INFO Found pre_configure_hook hook
== 2020-08-24 14:08:59,167 hooks.py:199 INFO Running 'pre_configure_hook' hook function (arguments: [<easybuild.easyblocks.generic.cmakemake.CMakeMake object at 0x2b6020ffd190>])...
== 2020-08-24 14:08:59,167 easyconfig.py:1786 INFO Derived full easyblock module path for CMakeMake: easybuild.easyblocks.generic.cmakemake
== 2020-08-24 14:08:59,167 easyconfig.py:1833 INFO Successfully obtained class 'CMakeMake' for easyblock 'CMakeMake' (software name 'limix-bgen')
== 2020-08-24 14:08:59,167 easyblock.py:3031 INFO Running method configure_step part of step configure
== 2020-08-24 14:08:59,167 environment.py:97 INFO Environment variable CMAKE_INCLUDE_PATH set to /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/include:/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/include (previously undefined)
== 2020-08-24 14:08:59,167 environment.py:97 INFO Environment variable CMAKE_LIBRARY_PATH set to /cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64:/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib:/home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/lib:/cvmfs/soft.computecanada.ca/easybuild/software/2020/avx2/Core/almosthere/1.0.10/lib: (previous value: '/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/lib64')
== 2020-08-24 14:08:59,168 filetools.py:1495 INFO Creating directory /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj (parents: True, set_gid: False, sticky: False)
== 2020-08-24 14:08:59,168 run.py:203 DEBUG run_cmd: running cmd  cmake -DCMAKE_INSTALL_PREFIX=/home/mboisson/.local/easybuild/software/2020/avx2/Core/limix-bgen/3.0.3 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='gcc' -DCMAKE_C_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_CXX_COMPILER='g++' -DCMAKE_CXX_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_Fortran_COMPILER='gfortran' -DCMAKE_Fortran_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_VERBOSE_MAKEFILE=ON  -DCMAKE_SKIP_INSTALL_RPATH=ON  /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3/ (in /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj)
== 2020-08-24 14:08:59,168 run.py:222 INFO running cmd:  cmake -DCMAKE_INSTALL_PREFIX=/home/mboisson/.local/easybuild/software/2020/avx2/Core/limix-bgen/3.0.3 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='gcc' -DCMAKE_C_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_CXX_COMPILER='g++' -DCMAKE_CXX_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_Fortran_COMPILER='gfortran' -DCMAKE_Fortran_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_VERBOSE_MAKEFILE=ON  -DCMAKE_SKIP_INSTALL_RPATH=ON  /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3/
== 2020-08-24 14:08:59,324 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/site-packages/easybuild-framework/easybuild/base/exceptions.py:124 in __init__): cmd " cmake -DCMAKE_INSTALL_PREFIX=/home/mboisson/.local/easybuild/software/2020/avx2/Core/limix-bgen/3.0.3 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='gcc' -DCMAKE_C_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_CXX_COMPILER='g++' -DCMAKE_CXX_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_Fortran_COMPILER='gfortran' -DCMAKE_Fortran_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_VERBOSE_MAKEFILE=ON  -DCMAKE_SKIP_INSTALL_RPATH=ON  /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/bgen-3.0.3/" exited with exit code 1 and output:
-------------------------------------------------------------------------------
Hello there. This is the bgen (3.0.3) project. We wish you an easy ride.
If by any chance you find in trouble, please, do not hesitate in contacting
us at <https://github.com/limix/bgen/issues/new>.
-------------------------------------------------------------------------------
-- The C compiler identification is GNU 9.3.0
-- Check for working C compiler: /cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin/gcc
-- Check for working C compiler: /cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin/gcc -- broken
CMake Error at /cvmfs/soft.computecanada.ca/gentoo/2020/usr/share/cmake/Modules/CMakeTestCCompiler.cmake:60 (message):
  The C compiler

    "/cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin/gcc"

  is not able to compile a simple test program.

  It fails with the following output:

    Change Dir: /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj/CMakeFiles/CMakeTmp

    Run Build Command(s):/cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/gmake cmTC_a7b2b/fast && /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/gmake -f CMakeFiles/cmTC_a7b2b.dir/build.make CMakeFiles/cmTC_a7b2b.dir/build
    gmake[1]: Entering directory '/tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj/CMakeFiles/CMakeTmp'
    Building C object CMakeFiles/cmTC_a7b2b.dir/testCCompiler.c.o
    /cvmfs/soft.computecanada.ca/easybuild/software/2020/Core/gcccore/9.3.0/bin/gcc   -O2 -ftree-vectorize -march=core-avx2 -fno-math-errno    -o CMakeFiles/cmTC_a7b2b.dir/testCCompiler.c.o   -c /tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj/CMakeFiles/CMakeTmp/testCCompiler.c
    Linking C executable cmTC_a7b2b
    /cvmfs/soft.computecanada.ca/gentoo/2020/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_a7b2b.dir/link.txt --verbose=1
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    /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin/ld.gold: /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.8' not found (required by /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin/ld.gold)
    /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin/ld.gold: /usr/lib64/libstdc++.so.6: version `CXXABI_1.3.9' not found (required by /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin/ld.gold)
    /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin/ld.gold: /usr/lib64/libstdc++.so.6: version `GLIBCXX_3.4.21' not found (required by /home/mboisson/.local/easybuild/software/2020/Core/binutils/2.34/bin/ld.gold)
    collect2: error: ld returned 1 exit status
    gmake[1]: *** [CMakeFiles/cmTC_a7b2b.dir/build.make:87: cmTC_a7b2b] Error 1
    gmake[1]: Leaving directory '/tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj/CMakeFiles/CMakeTmp'
    gmake: *** [Makefile:121: cmTC_a7b2b/fast] Error 2


  CMake will not be able to correctly generate this project.
Call Stack (most recent call first):
  CMakeLists.txt:4 (project)


-- Configuring incomplete, errors occurred!
See also "/tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj/CMakeFiles/CMakeOutput.log".
See also "/tmp/mboisson/avx2/limixbgen/3.0.3/GCCcore-9.3.0/easybuild_obj/CMakeFiles/CMakeError.log".
 (at easybuild/site-packages/easybuild-framework/easybuild/tools/run.py:533 in parse_cmd_output)
== 2020-08-24 14:08:59,324 config.py:569 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/mboisson/.local/easybuild/software/2020
== 2020-08-24 14:08:59,324 filetools.py:1605 INFO Removing lock /home/mboisson/.local/easybuild/software/2020/.locks/_home_mboisson_.local_easybuild_software_2020_avx2_Core_limix-bgen_3.0.3.lock...
== 2020-08-24 14:08:59,325 filetools.py:330 INFO Path /home/mboisson/.local/easybuild/software/2020/.locks/_home_mboisson_.local_easybuild_software_2020_avx2_Core_limix-bgen_3.0.3.lock successfully removed.
== 2020-08-24 14:08:59,325 filetools.py:1609 INFO Lock removed: /home/mboisson/.local/easybuild/software/2020/.locks/_home_mboisson_.local_easybuild_software_2020_avx2_Core_limix-bgen_3.0.3.lock
== 2020-08-24 14:08:59,325 easyblock.py:3324 WARNING build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/home/mboisson/.local/easybuild/software/2020/avx2/Core/limix-bgen/3.0.3 -DCMAKE_BUILD_TYPE=Release -DCMAKE_C_COMPILER='gcc' -DCMAKE_C_FLAGS='-O2 -ftree-vectorize -march=core-avx2 -fno-math-errno' -DCMAKE_CXX_COMPILER='g++' -DCMAKE_CXX_FLAGS='-O2 -ftree-vectorize -
== 2020-08-24 14:08:59,325 easyblock.py:295 INFO Closing log for application name limix-bgen version 3.0.3