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Created July 1, 2015 12:27
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EasyBuild test report for easyconfigs PR #1741
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easybuild_test_report_easyconfigs_pr1741_20152701-UTC-12-27-26.md

Test report for easybuilders/easybuild-easyconfigs#1741

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS cramtools-2.0-Java-1.7.0_80.eb

Time info

  • start: Wed, 01 Jul 2015 12:26:42 +0000 (UTC)
  • end: Wed, 01 Jul 2015 12:27:26 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 2.1.1
  • easybuild-easyblocks version: 2.1.1
  • command line:
eb --from-pr=1741 --github-user=mmterpstra --upload-test-report -dfr --test-report-env-filter=^SSH|USER|HOSTNAME|UID|.*COOKIE.*
  • full configuration (includes defaults):
--buildpath=/apps//.tmp/easybuild/builds/
--cleanup-builddir
--debug
--disable-allow-modules-tool-mismatch
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-templates
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-dry-run
--disable-dry-run-short
--disable-experimental
--disable-hidden
--disable-ignore-osdeps
--disable-info
--disable-job
--disable-list-toolchains
--disable-logtostdout
--disable-module-only
--disable-pretend
--disable-quiet
--disable-recursive-module-unload
--disable-regtest
--disable-sequential
--disable-set-gid-bit
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-update-modules-tool-cache
--external-modules-metadata=""
--force
--from-pr=1741
--github-user=mmterpstra
--ignore-dirs=.git,.svn
--installpath=/apps/
--logfile-format=easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log
--module-naming-scheme=EasyBuildMNS
--module-syntax=Tcl
--moduleclasses="['base', 'bio', 'cae', 'chem', 'compiler', 'data', 'debugger', 'devel', 'geo', 'ide', 'lang', 'lib', 'math', 'mpi', 'numlib', 'perf', 'phys', 'system', 'toolchain', 'tools', 'vis']"
--modules-tool=Lmod
--repository=FileRepository
--repositorypath=/home/umcg-mterpstra/.local/easybuild/ebfiles_repo
--robot-paths=""
--robot=/apps/software/EasyBuild/2.1.1/lib/python2.6/site-packages/easybuild_easyconfigs-2.1.1-py2.6.egg/easybuild/easyconfigs
--sourcepath=/apps//sources/
--strict=warn
--subdir-modules=modules
--subdir-software=software
--suffix-modules-path=all
--test-report-env-filter=^SSH|USER|HOSTNAME|UID|.*COOKIE.*
--upload-test-report

System info

  • core count: 2
  • cpu model: Intel(R) Xeon(R) CPU E5-2660 0 @ 2.20GHz
  • cpu speed: 2200.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/apps/software/GCC/4.8.4/libexec/gcc/x86_64-unknown-linux-gnu/4.8.4/lto-wrapper; Target: x86_64-unknown-linux-gnu; Configured with: ../configure --enable-languages=c,c++,fortran --enable-lto --enable-checking=release --disable-multilib --enable-shared=yes --enable-static=yes --enable-threads=posix --enable-gold=default --enable-plugins --enable-ld --with-plugin-ld=ld.gold --enable-bootstrap --prefix=/apps/software/GCC/4.8.4 --with-local-prefix=/apps/software/GCC/4.8.4; Thread model: posix; gcc version 4.8.4 (GCC) ;
  • glibc version: 2.12
  • hostname: umcg-login01
  • os name: SL
  • os type: Linux
  • os version: 6.6
  • platform name: x86_64-unknown-linux
  • python version: 2.7.9 (default, Jun 10 2015, 17:17:55) ; [GCC 4.8.4]
  • system gcc path: /apps/software/GCC/4.8.4/bin/gcc
  • system python path: /apps/software/Python/2.7.9-goolf-1.7.20/bin/python

List of loaded modules

  • EasyBuild/2.1.1
  • GCC/4.8.4
  • numactl/2.0.10-GCC-4.8.4
  • hwloc/1.10.1-GCC-4.8.4
  • OpenMPI/1.8.4-GCC-4.8.4
  • OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0
  • gompi/1.7.20
  • FFTW/3.3.4-gompi-1.7.20
  • ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0
  • goolf/1.7.20
  • bzip2/1.0.6-goolf-1.7.20
  • zlib/1.2.8-goolf-1.7.20
  • libreadline/6.3-goolf-1.7.20
  • ncurses/5.9-goolf-1.7.20
  • Python/2.7.9-goolf-1.7.20

Environment

BASH_ENV = /usr/share/lmod/lmod/init/bash
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@");
 [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CPATH = /apps/software/Python/2.7.9-goolf-1.7.20/include:/apps/software/ncurses/5.9-goolf-1.7.20/include:/apps/software/libreadline/6.3-goolf-1.7.20/include:/apps/software/zlib/1.2.8-goolf-1.7.20/include:/apps/software/bzip2/1.0.6-goolf-1.7.20/include:/apps/software/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include:/apps/software/FFTW/3.3.4-gompi-1.7.20/include:/apps/software/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include:/apps/software/OpenMPI/1.8.4-GCC-4.8.4/include:/apps/software/hwloc/1.10.1-GCC-4.8.4/include:/apps/software/numactl/2.0.10-GCC-4.8.4/include:/apps/software/GCC/4.8.4/include
CVS_RSH = ssh
DISPLAY = localhost:10.0
EASYBUILD_BUILDPATH = /apps//.tmp/easybuild/builds/
EASYBUILD_INSTALLPATH = /apps/
EASYBUILD_MODULES_TOOL = Lmod
EASYBUILD_SOURCEPATH = /apps//sources/
EBDEVELBZIP2 = /apps/software/bzip2/1.0.6-goolf-1.7.20/easybuild/bzip2-1.0.6-goolf-1.7.20-easybuild-devel
EBDEVELEASYBUILD = /apps/software/EasyBuild/2.1.1/easybuild/EasyBuild-2.1.1-easybuild-devel
EBDEVELFFTW = /apps/software/FFTW/3.3.4-gompi-1.7.20/easybuild/FFTW-3.3.4-gompi-1.7.20-easybuild-devel
EBDEVELGCC = /apps/software/GCC/4.8.4/easybuild/GCC-4.8.4-easybuild-devel
EBDEVELGOMPI = /apps/software/gompi/1.7.20/easybuild/gompi-1.7.20-easybuild-devel
EBDEVELGOOLF = /apps/software/goolf/1.7.20/easybuild/goolf-1.7.20-easybuild-devel
EBDEVELHWLOC = /apps/software/hwloc/1.10.1-GCC-4.8.4/easybuild/hwloc-1.10.1-GCC-4.8.4-easybuild-devel
EBDEVELLIBREADLINE = /apps/software/libreadline/6.3-goolf-1.7.20/easybuild/libreadline-6.3-goolf-1.7.20-easybuild-devel
EBDEVELNCURSES = /apps/software/ncurses/5.9-goolf-1.7.20/easybuild/ncurses-5.9-goolf-1.7.20-easybuild-devel
EBDEVELNUMACTL = /apps/software/numactl/2.0.10-GCC-4.8.4/easybuild/numactl-2.0.10-GCC-4.8.4-easybuild-devel
EBDEVELOPENBLAS = /apps/software/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/easybuild/OpenBLAS-0.2.13-GCC-4.8.4-LAPACK-3.5.0-easybuild-devel
EBDEVELOPENMPI = /apps/software/OpenMPI/1.8.4-GCC-4.8.4/easybuild/OpenMPI-1.8.4-GCC-4.8.4-easybuild-devel
EBDEVELPYTHON = /apps/software/Python/2.7.9-goolf-1.7.20/easybuild/Python-2.7.9-goolf-1.7.20-easybuild-devel
EBDEVELSCALAPACK = /apps/software/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/easybuild/ScaLAPACK-2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0-easybuild-devel
EBDEVELZLIB = /apps/software/zlib/1.2.8-goolf-1.7.20/easybuild/zlib-1.2.8-goolf-1.7.20-easybuild-devel
EBEXTSLISTPYTHON = requests-2.6.2,setuptools-11.3.1,pip-6.0.6,nose-1.3.4,numpy-1.9.1,scipy-0.14.1,blist-1.3.6,mpi4py-1.3.1,paycheck-1.0.2,argparse-1.2.1,pbr-0.10.8,lockfile-0.10.2,Cython-0.21.2,six-1.9.0,dateutil-2.4.0,deap-1.0.1,decorator-3.4.0,arff-2.0.1,pycrypto-2.6.1,ecdsa-0.11,paramiko-1.15.2,pyparsing-2.0.3,netifaces-0.10.4,netaddr-0.7.13,mock-1.0.1,pytz-2014.10,pandas-0.16.0
EBROOTBZIP2 = /apps/software/bzip2/1.0.6-goolf-1.7.20
EBROOTEASYBUILD = /apps/software/EasyBuild/2.1.1
EBROOTFFTW = /apps/software/FFTW/3.3.4-gompi-1.7.20
EBROOTGCC = /apps/software/GCC/4.8.4
EBROOTGOMPI = /apps/software/gompi/1.7.20
EBROOTGOOLF = /apps/software/goolf/1.7.20
EBROOTHWLOC = /apps/software/hwloc/1.10.1-GCC-4.8.4
EBROOTLIBREADLINE = /apps/software/libreadline/6.3-goolf-1.7.20
EBROOTNCURSES = /apps/software/ncurses/5.9-goolf-1.7.20
EBROOTNUMACTL = /apps/software/numactl/2.0.10-GCC-4.8.4
EBROOTOPENBLAS = /apps/software/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0
EBROOTOPENMPI = /apps/software/OpenMPI/1.8.4-GCC-4.8.4
EBROOTPYTHON = /apps/software/Python/2.7.9-goolf-1.7.20
EBROOTSCALAPACK = /apps/software/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0
EBROOTZLIB = /apps/software/zlib/1.2.8-goolf-1.7.20
EBVERSIONBZIP2 = 1.0.6
EBVERSIONEASYBUILD = 2.1.1
EBVERSIONFFTW = 3.3.4
EBVERSIONGCC = 4.8.4
EBVERSIONGOMPI = 1.7.20
EBVERSIONGOOLF = 1.7.20
EBVERSIONHWLOC = 1.10.1
EBVERSIONLIBREADLINE = 6.3
EBVERSIONNCURSES = 5.9
EBVERSIONNUMACTL = 2.0.10
EBVERSIONOPENBLAS = 0.2.13
EBVERSIONOPENMPI = 1.8.4
EBVERSIONPYTHON = 2.7.9
EBVERSIONSCALAPACK = 2.0.2
EBVERSIONZLIB = 1.2.8
G_BROKEN_FILENAMES = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /home/umcg-mterpstra
LANG = en_US.UTF-8
LC_ADDRESS = nl_NL.UTF-8
LC_IDENTIFICATION = nl_NL.UTF-8
LC_MEASUREMENT = nl_NL.UTF-8
LC_MONETARY = nl_NL.UTF-8
LC_NAME = nl_NL.UTF-8
LC_NUMERIC = nl_NL.UTF-8
LC_PAPER = nl_NL.UTF-8
LC_TELEPHONE = nl_NL.UTF-8
LC_TIME = nl_NL.UTF-8
LD_LIBRARY_PATH = /apps/software/Python/2.7.9-goolf-1.7.20/lib:/apps/software/ncurses/5.9-goolf-1.7.20/lib:/apps/software/libreadline/6.3-goolf-1.7.20/lib:/apps/software/zlib/1.2.8-goolf-1.7.20/lib:/apps/software/bzip2/1.0.6-goolf-1.7.20/lib:/apps/software/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/software/FFTW/3.3.4-gompi-1.7.20/lib:/apps/software/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/apps/software/OpenMPI/1.8.4-GCC-4.8.4/lib:/apps/software/hwloc/1.10.1-GCC-4.8.4/lib:/apps/software/numactl/2.0.10-GCC-4.8.4/lib:/apps/software/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/apps/software/GCC/4.8.4/lib64:/apps/software/GCC/4.8.4/lib:/apps/software/EasyBuild/2.1.1/lib
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LIBRARY_PATH = /apps/software/Python/2.7.9-goolf-1.7.20/lib:/apps/software/ncurses/5.9-goolf-1.7.20/lib:/apps/software/libreadline/6.3-goolf-1.7.20/lib:/apps/software/zlib/1.2.8-goolf-1.7.20/lib:/apps/software/bzip2/1.0.6-goolf-1.7.20/lib:/apps/software/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/apps/software/FFTW/3.3.4-gompi-1.7.20/lib:/apps/software/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/apps/software/OpenMPI/1.8.4-GCC-4.8.4/lib:/apps/software/hwloc/1.10.1-GCC-4.8.4/lib:/apps/software/numactl/2.0.10-GCC-4.8.4/lib:/apps/software/GCC/4.8.4/lib64:/apps/software/GCC/4.8.4/lib:/apps/software/EasyBuild/2.1.1/lib
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_COLORIZE = yes
LMOD_DEFAULT_MODULEPATH = /apps/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/Modules/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_FULL_SETTARG_SUPPORT = no
LMOD_PKG = /usr/share/lmod/lmod
LMOD_PREPEND_BLOCK = normal
LMOD_SETTARG_CMD = :
LMOD_arch = x86_64
LMOD_sys = Linux
LOADEDMODULES = EasyBuild/2.1.1:GCC/4.8.4:numactl/2.0.10-GCC-4.8.4:hwloc/1.10.1-GCC-4.8.4:OpenMPI/1.8.4-GCC-4.8.4:OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0:gompi/1.7.20:FFTW/3.3.4-gompi-1.7.20:ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0:goolf/1.7.20:bzip2/1.0.6-goolf-1.7.20:zlib/1.2.8-goolf-1.7.20:libreadline/6.3-goolf-1.7.20:ncurses/5.9-goolf-1.7.20:Python/2.7.9-goolf-1.7.20
LOGNAME = umcg-mterpstra
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
MAIL = /var/spool/mail/umcg-mterpstra
MANPATH = /apps/software/Python/2.7.9-goolf-1.7.20/share/man:/apps/software/ncurses/5.9-goolf-1.7.20/man:/apps/software/libreadline/6.3-goolf-1.7.20/share/man:/apps/software/zlib/1.2.8-goolf-1.7.20/share/man:/apps/software/bzip2/1.0.6-goolf-1.7.20/man:/apps/software/FFTW/3.3.4-gompi-1.7.20/share/man:/apps/software/OpenMPI/1.8.4-GCC-4.8.4/share/man:/apps/software/hwloc/1.10.1-GCC-4.8.4/share/man:/apps/software/numactl/2.0.10-GCC-4.8.4/share/man:/apps/software/GCC/4.8.4/share/man:/usr/share/lmod/lmod/share/man
MODULEPATH = /apps/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/Modules/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT = /usr/share/modulefiles
MODULESHOME = /usr/share/lmod/lmod
PATH = /apps/software/Python/2.7.9-goolf-1.7.20/bin:/apps/software/ncurses/5.9-goolf-1.7.20/bin:/apps/software/libreadline/6.3-goolf-1.7.20/bin:/apps/software/bzip2/1.0.6-goolf-1.7.20/bin:/apps/software/FFTW/3.3.4-gompi-1.7.20/bin:/apps/software/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/bin:/apps/software/OpenMPI/1.8.4-GCC-4.8.4/bin:/apps/software/hwloc/1.10.1-GCC-4.8.4/bin:/apps/software/numactl/2.0.10-GCC-4.8.4/bin:/apps/software/GCC/4.8.4/bin:/apps/software/EasyBuild/2.1.1/bin:/usr/share/lmod/lmod/libexec:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/umcg-mterpstra/bin
PKG_CONFIG_PATH = /apps/software/Python/2.7.9-goolf-1.7.20/lib/pkgconfig:/apps/software/zlib/1.2.8-goolf-1.7.20/lib/pkgconfig:/apps/software/FFTW/3.3.4-gompi-1.7.20/lib/pkgconfig:/apps/software/OpenMPI/1.8.4-GCC-4.8.4/lib/pkgconfig:/apps/software/hwloc/1.10.1-GCC-4.8.4/lib/pkgconfig
PREFIX_ROOT = /apps/
PWD = /groups/umcg-oncogenetics/tmp04/easybuild-easyconfigs/easybuild/easyconfigs/c/cramtools
PYTHONPATH = /apps/software/EasyBuild/2.1.1/lib/python2.6/site-packages
QTDIR = /usr/lib64/qt-3.3
QTINC = /usr/lib64/qt-3.3/include
QTLIB = /usr/lib64/qt-3.3/lib
SHELL = /bin/bash
SHLVL = 2
TERM = xterm
TEST_EASYBUILD_MODULES_TOOL = Lmod
_ = /apps/software/Python/2.7.9-goolf-1.7.20/bin/python
_LMFILES_ = /apps/modules/all/EasyBuild/2.1.1:/apps/modules/all/GCC/4.8.4:/apps/modules/all/numactl/2.0.10-GCC-4.8.4:/apps/modules/all/hwloc/1.10.1-GCC-4.8.4:/apps/modules/all/OpenMPI/1.8.4-GCC-4.8.4:/apps/modules/all/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0:/apps/modules/all/gompi/1.7.20:/apps/modules/all/FFTW/3.3.4-gompi-1.7.20:/apps/modules/all/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0:/apps/modules/all/goolf/1.7.20:/apps/modules/all/bzip2/1.0.6-goolf-1.7.20:/apps/modules/all/zlib/1.2.8-goolf-1.7.20:/apps/modules/all/libreadline/6.3-goolf-1.7.20:/apps/modules/all/ncurses/5.9-goolf-1.7.20:/apps/modules/all/Python/2.7.9-goolf-1.7.20
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