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file1.txt
== 2016-12-10 11:43:44,892 easyblock.py:261 INFO This is EasyBuild 3.0.1 (framework: 3.0.1, easyblocks: 3.0.1) on host compilator.cluster.bc2.ch.
== 2016-12-10 11:43:44,893 easyblock.py:267 INFO This is easyblock MakeCp from module easybuild.easyblocks.generic.makecp (/scratch/rpath-test/apps/EasyBuild/3.0.1/lib/python2.6/site-packages/easybuild_easyblocks-3.0.1-py2.6.egg/easybuild/easyblocks/generic/makecp.pyo)
== 2016-12-10 11:43:44,893 easyblock.py:753 INFO Build dir set to /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20
== 2016-12-10 11:43:44,894 easyblock.py:792 INFO Software install dir set to /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
== 2016-12-10 11:43:44,894 easyblock.py:797 INFO Module install dir set to /scratch/rpath-test/modules/all
== 2016-12-10 11:43:44,895 easyblock.py:246 INFO Init completed for application name MRtrix3 version 0.3.14
== 2016-12-10 11:43:44,895 easyblock.py:2477 INFO Obtained application instance of for MRtrix3 (easyblock: MakeCp)
== 2016-12-10 11:43:44,895 build_log.py:216 INFO building and installing MRtrix3/0.3.14-goolf-1.7.20...
== 2016-12-10 11:43:44,896 build_log.py:216 INFO fetching files...
== 2016-12-10 11:43:44,896 easyblock.py:2271 INFO Starting fetch step
== 2016-12-10 11:43:44,897 easyblock.py:2274 INFO Running method fetch_step part of step fetch
== 2016-12-10 11:43:44,897 easyblock.py:1446 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2016-12-10 11:43:44,897 filetools.py:237 INFO Command eb found at /scratch/rpath-test/apps/EasyBuild/3.0.1/bin/eb
== 2016-12-10 11:43:44,899 easyblock.py:590 INFO Found file 0.3.14.tar.gz at /export/soft/source/m/MRtrix3/0.3.14.tar.gz
== 2016-12-10 11:43:44,900 easyblock.py:350 INFO Added sources: [{'path': '/export/soft/source/m/MRtrix3/0.3.14.tar.gz', 'cmd': None, 'finalpath': '/scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20', 'name': '0.3.14.tar.gz', 'checksum': None}]
== 2016-12-10 11:43:44,900 easyblock.py:1487 INFO no patches provided
== 2016-12-10 11:43:44,906 easyblock.py:1496 INFO md5 checksum for /export/soft/source/m/MRtrix3/0.3.14.tar.gz: 30604368488484b4990cb81268c107f3
== 2016-12-10 11:43:44,906 easyblock.py:1513 INFO Checking dirs that need to be created: ['/scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20', '/scratch/rpath-test/modules/all/MRtrix3', '/scratch/rpath-test/modules/bio/MRtrix3']
== 2016-12-10 11:43:44,907 build_log.py:216 INFO creating build dir, resetting environment...
== 2016-12-10 11:43:44,907 easyblock.py:2271 INFO Starting ready step
== 2016-12-10 11:43:44,908 easyblock.py:2274 INFO Running method check_readiness_step part of step ready
== 2016-12-10 11:43:44,909 easyblock.py:1404 INFO Setting parallelism: 1
== 2016-12-10 11:43:45,013 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2016-12-10 11:43:45,013 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:43:45,014 easyblock.py:1409 WARNING Loaded modules detected: ['EasyBuild/3.0.1']
== 2016-12-10 11:43:45,172 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2016-12-10 11:43:45,173 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:43:45,434 easyblock.py:2274 INFO Running method make_builddir part of step ready
== 2016-12-10 11:43:45,435 easyblock.py:817 INFO Found old directory /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20
== 2016-12-10 11:43:45,551 filetools.py:1072 INFO Path /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20 successfully removed.
== 2016-12-10 11:43:45,551 easyblock.py:824 INFO Removed old directory /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20
== 2016-12-10 11:43:45,551 filetools.py:967 INFO Creating directory /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20 (parents: True, set_gid: False, sticky: False)
== 2016-12-10 11:43:45,552 easyblock.py:2274 INFO Running method env_reset_changes part of step ready
== 2016-12-10 11:43:45,552 easyblock.py:2274 INFO Running method handle_iterate_opts part of step ready
== 2016-12-10 11:43:45,552 build_log.py:216 INFO unpacking...
== 2016-12-10 11:43:45,553 easyblock.py:2271 INFO Starting source step
== 2016-12-10 11:43:45,553 easyblock.py:2274 INFO Running method checksum_step part of step source
== 2016-12-10 11:43:45,553 easyblock.py:1529 INFO Checksum verification for /export/soft/source/m/MRtrix3/0.3.14.tar.gz using None passed.
== 2016-12-10 11:43:45,554 easyblock.py:2274 INFO Running method extract_step part of step source
== 2016-12-10 11:43:45,554 easyblock.py:1536 INFO Unpacking source 0.3.14.tar.gz
== 2016-12-10 11:43:45,645 build_log.py:216 INFO patching...
== 2016-12-10 11:43:45,645 easyblock.py:2271 INFO Starting patch step
== 2016-12-10 11:43:45,646 easyblock.py:2274 INFO Running method patch_step part of step patch
== 2016-12-10 11:43:45,646 build_log.py:216 INFO preparing...
== 2016-12-10 11:43:45,647 easyblock.py:2271 INFO Starting prepare step
== 2016-12-10 11:43:45,647 easyblock.py:2274 INFO Running method prepare_step part of step prepare
== 2016-12-10 11:43:46,104 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:43:46,105 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:43:46,504 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib')
== 2016-12-10 11:43:46,505 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:43:46,770 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:43:46,771 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:43:47,060 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib')
== 2016-12-10 11:43:47,061 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:43:47,335 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib')
== 2016-12-10 11:43:47,336 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:43:47,340 toolchain.py:598 INFO List of toolchain dependency modules and toolchain definition match!
== 2016-12-10 11:43:47,342 options.py:90 WARNING option: option with name _opt_CC returns None
== 2016-12-10 11:43:47,342 options.py:90 WARNING option: option with name _opt_CXX returns None
== 2016-12-10 11:43:47,343 options.py:90 WARNING option: option with name _opt_F77 returns None
== 2016-12-10 11:43:47,343 options.py:90 WARNING option: option with name _opt_F90 returns None
== 2016-12-10 11:43:47,343 options.py:90 WARNING option: option with name _opt_FC returns None
== 2016-12-10 11:43:47,358 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib64 was not found
== 2016-12-10 11:43:47,367 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib64 was not found
== 2016-12-10 11:43:47,376 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib64 was not found
== 2016-12-10 11:43:47,379 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib64 was not found
== 2016-12-10 11:43:47,381 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib64 was not found
== 2016-12-10 11:43:47,382 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/lib64 was not found
== 2016-12-10 11:43:47,382 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/lib was not found
== 2016-12-10 11:43:47,382 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib64 was not found
== 2016-12-10 11:43:47,383 variables.py:200 WARNING flags_for_subdirs: directory /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib64 was not found
== 2016-12-10 11:43:47,389 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,390 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,390 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,390 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,391 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,391 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,391 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,391 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,392 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,392 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,392 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,393 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,393 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,393 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,394 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,394 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,394 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
== 2016-12-10 11:43:47,394 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
== 2016-12-10 11:43:47,395 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,395 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,395 environment.py:97 INFO Environment variable CPPFLAGS set to -I/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include -I/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/include -I/scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include (previously undefined)
== 2016-12-10 11:43:47,396 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include -I/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/include -I/scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include (previously undefined)
== 2016-12-10 11:43:47,396 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
== 2016-12-10 11:43:47,396 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
== 2016-12-10 11:43:47,396 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,397 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,397 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,397 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,398 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,398 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,398 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,398 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,399 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
== 2016-12-10 11:43:47,399 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
== 2016-12-10 11:43:47,399 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,400 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,400 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,400 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,401 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:43:47,401 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:43:47,401 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:43:47,401 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:43:47,402 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:43:47,402 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:43:47,402 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-10 11:43:47,403 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-10 11:43:47,403 environment.py:97 INFO Environment variable FFT_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:43:47,403 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:43:47,403 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:43:47,404 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:43:47,404 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:43:47,404 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:43:47,405 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-10 11:43:47,405 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-10 11:43:47,405 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2016-12-10 11:43:47,406 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2016-12-10 11:43:47,406 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,406 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,406 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,407 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,407 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,407 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,408 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,408 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,408 environment.py:97 INFO Environment variable LDFLAGS set to -L/scratch/rpath-test/apps/GCC/4.8.4/lib64 -L/scratch/rpath-test/apps/GCC/4.8.4/lib -L/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib -L/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib -L/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib -L/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib (previously undefined)
== 2016-12-10 11:43:47,408 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/scratch/rpath-test/apps/GCC/4.8.4/lib64 -L/scratch/rpath-test/apps/GCC/4.8.4/lib -L/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib -L/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib -L/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib -L/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib (previously undefined)
== 2016-12-10 11:43:47,409 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,409 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,409 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,410 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,410 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
== 2016-12-10 11:43:47,410 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
== 2016-12-10 11:43:47,411 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-10 11:43:47,411 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-10 11:43:47,411 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,411 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,412 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,412 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,412 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,413 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,413 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,413 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,413 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2016-12-10 11:43:47,414 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2016-12-10 11:43:47,414 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,414 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:43:47,415 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-12-10 11:43:47,415 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-12-10 11:43:47,415 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:43:47,416 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:43:47,416 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:43:47,416 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:43:47,416 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2016-12-10 11:43:47,417 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2016-12-10 11:43:47,417 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2016-12-10 11:43:47,417 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2016-12-10 11:43:47,418 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2016-12-10 11:43:47,418 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2016-12-10 11:43:47,418 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2016-12-10 11:43:47,418 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2016-12-10 11:43:47,419 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2016-12-10 11:43:47,419 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2016-12-10 11:43:47,419 environment.py:97 INFO Environment variable MPI_INC_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/include (previously undefined)
== 2016-12-10 11:43:47,420 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/include (previously undefined)
== 2016-12-10 11:43:47,420 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib (previously undefined)
== 2016-12-10 11:43:47,420 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib (previously undefined)
== 2016-12-10 11:43:47,421 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib/libmpi.so (previously undefined)
== 2016-12-10 11:43:47,421 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib/libmpi.so (previously undefined)
== 2016-12-10 11:43:47,421 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
== 2016-12-10 11:43:47,421 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
== 2016-12-10 11:43:47,422 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2016-12-10 11:43:47,422 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2016-12-10 11:43:47,422 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2016-12-10 11:43:47,423 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2016-12-10 11:43:47,423 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,423 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,423 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,424 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2016-12-10 11:43:47,424 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2016-12-10 11:43:47,424 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2016-12-10 11:43:47,425 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,425 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:43:47,425 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined)
== 2016-12-10 11:43:47,426 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined)
== 2016-12-10 11:43:47,426 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,426 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:43:47,426 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,427 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:43:47,427 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-10 11:43:47,427 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-10 11:43:47,428 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,428 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:43:47,428 toolchain.py:688 INFO Not putting RPATH wrappers in place, disabled via 'rpath' toolchain option
== 2016-12-10 11:43:47,429 easyblock.py:1326 INFO Using /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20/mrtrix3-0.3.14/ as start dir
== 2016-12-10 11:43:47,429 build_log.py:216 INFO configuring...
== 2016-12-10 11:43:47,429 easyblock.py:2271 INFO Starting configure step
== 2016-12-10 11:43:47,430 easyblock.py:2274 INFO Running method configure_step part of step configure
== 2016-12-10 11:43:47,430 build_log.py:216 INFO building...
== 2016-12-10 11:43:47,431 easyblock.py:2271 INFO Starting build step
== 2016-12-10 11:43:47,431 easyblock.py:2274 INFO Running method build_step part of step build
== 2016-12-10 11:48:14,880 run.py:443 INFO cmd "./configure && ./build && echo make -j 1 " exited with exitcode 0 and output:
MRtrix build type requested: release
Detecting OS: linux
Checking for C++11 compliant compiler [g++]: 4.8.4 - tested ok
Detecting pointer size: 64 bit
Detecting byte order: little-endian
Checking for variable-length array support: yes
Checking for non-POD variable-length array support: yes
Checking for zlib compression library: 1.2.8
checking for Eigen 3 library: 3.2.8
Checking shared library generation: yes
Checking for Qt moc: moc (version 4.8.6)
Checking for Qt qmake: qmake (version 4.8.6)
Checking for Qt rcc: rcc (version 4.8.6)
Checking for Qt: 4.8.6
writing configuration to file './release/config': ok
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( 22/412) [CC] release/lib/exception.o
( 23/412) [CC] release/src/dwi/tractography/mapping/mapping.o
( 24/412) [CC] release/lib/image_io/sparse.o
( 25/412) [CC] release/cmd/mrmesh.o
( 26/412) [MOC] release/src/gui/mrview/spin_box_moc.cpp
( 27/412) [MOC] release/src/gui/mrview/tool/view_moc.cpp
( 28/412) [CC] release/src/gui/mrview/tool/connectome/connectome.o
( 29/412) [MOC] release/src/gui/lighting_dock_moc.cpp
( 30/412) [CC] release/lib/mrtrix.o
( 31/412) [CC] release/cmd/dwi2tensor.o
( 32/412) [CC] release/src/connectome/connectome.o
( 33/412) [CC] release/cmd/mrcalc.o
( 34/412) [CC] release/lib/file/dicom/image.o
( 35/412) [CC] release/cmd/mrpad.o
( 36/412) [CC] release/cmd/fixeldivide.o
( 37/412) [CC] release/lib/formats/mrtrix_utils.o
( 38/412) [CC] release/src/gui/mrview/mode/base.o
( 39/412) [CC] release/src/dwi/tractography/properties.o
( 40/412) [MOC] release/src/gui/mrview/colourmap_button_moc.cpp
( 41/412) [CC] release/src/gui/opengl/font.o
( 42/412) [CC] release/cmd/tck2connectome.o
( 43/412) [CC] release/src/gui/lighting_dock.o
( 44/412) [CC] release/src/dwi/tractography/mapping/writer.o
( 45/412) [CC] release/src/dwi/tractography/rng.o
( 46/412) [CC] release/src/gui/dialog/opengl.o
( 47/412) [CC] release/src/gui/gui.o
( 48/412) [CC] release/src/gui/dwi/render_frame.o
( 49/412) [CC] release/lib/formats/analyse.o
( 50/412) [CC] release/src/gui/mrview/tool/fixel.o
( 51/412) [CC] release/src/gui/dialog/dicom.o
( 52/412) [CC] release/cmd/tcksample.o
( 53/412) [MOC] release/src/gui/mrview/combo_box_error_moc.cpp
( 54/412) [CC] release/src/dwi/tractography/seeding/dynamic.o
( 55/412) [CC] release/src/gui/mrview/tool/screen_capture.o
( 56/412) [CC] release/src/gui/mrview/tool/connectome/colourmap_observers.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include src/gui/dwi/render_frame.cpp -o release/src/gui/dwi/render_frame.o:
In file included from src/gui/dwi/render_frame.h:21:0,
from src/gui/dwi/render_frame.cpp:21:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from src/gui/dwi/render_frame.cpp:21:0:
src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
( 57/412) [CC] release/src/gui/mrview/mode/ortho.o
( 58/412) [CC] release/cmd/mrthreshold.o
( 59/412) [CC] release/cmd/shview.o
( 60/412) [CC] release/lib/file/dicom/dict.o
( 61/412) [CC] release/src/dwi/tractography/mapping/mapper_plugins.o
( 62/412) [CC] release/src/gui/mrview/tool/view_moc.o
( 63/412) [CC] release/cmd/5tt2vis.o
( 64/412) [CC] release/src/gui/mrview/tool/base.o
( 65/412) [CC] release/lib/formats/list.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include cmd/shview.cpp -o release/cmd/shview.o:
In file included from src/gui/dwi/render_frame.h:21:0,
from src/gui/shview/render_window.h:19,
from cmd/shview.cpp:23:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from src/gui/shview/render_window.h:19:0,
from cmd/shview.cpp:23:
src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
( 66/412) [CC] release/lib/image_io/pipe.o
( 67/412) [CC] release/cmd/afdconnectivity.o
( 68/412) [CC] release/src/gui/mrview/tool/roi_editor/model.o
( 69/412) [CC] release/src/gui/shview/render_window.o
( 70/412) [CC] release/src/dwi/tractography/SIFT/track_contribution.o
( 71/412) [CC] release/src/dwi/directions/set.o
( 72/412) [CC] release/src/gui/dialog/report_exception.o
( 73/412) [CC] release/src/dwi/fmls.o
( 74/412) [CC] release/cmd/dcminfo.o
( 75/412) [CC] release/src/dwi/sdeconv/constrained.o
( 76/412) [CC] release/cmd/meshconvert.o
( 77/412) [CC] release/src/gui/mrview/tool/connectome/edge.o
( 78/412) [MOC] release/src/gui/mrview/tool/tractography/tractogram_moc.cpp
( 79/412) [CC] release/cmd/mrfilter.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include src/gui/shview/render_window.cpp -o release/src/gui/shview/render_window.o:
In file included from src/gui/dwi/render_frame.h:21:0,
from src/gui/shview/render_window.h:19,
from src/gui/shview/render_window.cpp:18:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from src/gui/shview/render_window.h:19:0,
from src/gui/shview/render_window.cpp:18:
src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
( 80/412) [CC] release/src/dwi/tractography/SIFT/gradient_sort.o
( 81/412) [CC] release/lib/formats/mri.o
( 82/412) [MOC] release/src/gui/mrview/tool/odf/preview_moc.cpp
( 83/412) [CC] release/src/gui/mrview/tool/tractography/tractogram_moc.o
( 84/412) [CC] release/src/gui/mrview/combo_box_error_moc.o
( 85/412) [MOC] release/src/gui/mrview/tool/roi_editor/roi_moc.cpp
( 86/412) [CC] release/lib/file/dicom/tree.o
( 87/412) [CC] release/src/dwi/tractography/ACT/gmwmi.o
( 88/412) [CC] release/src/gui/dialog/progress.o
( 89/412) [CC] release/src/gui/shapes/sphere.o
( 90/412) [CC] release/src/gui/mrview/tool/vector.o
( 91/412) [CC] release/src/gui/mrview/tool/tractography/track_scalar_file.o
( 92/412) [CC] release/lib/formats/mrtrix.o
( 93/412) [CC] release/src/gui/dwi/renderer.o
( 94/412) [CC] release/lib/image_io/scratch.o
( 95/412) [CC] release/cmd/5ttedit.o
( 96/412) [MOC] release/src/gui/mrview/tool/connectome/node_list_moc.cpp
( 97/412) [CC] release/src/gui/mrview/tool/connectome/node_list_moc.o
( 98/412) [CC] release/cmd/labelconfig.o
( 99/412) [CC] release/src/dwi/tractography/tracking/write_kernel.o
(100/412) [CC] release/lib/formats/ram.o
(101/412) [CC] release/src/gui/mrview/mode/volume.o
(102/412) [CC] release/src/dwi/tractography/resample.o
(103/412) [CC] release/src/connectome/mat2vec.o
(104/412) [CC] release/lib/formats/nifti1.o
(105/412) [CC] release/lib/file/key_value.o
(106/412) [CC] release/src/gui/mrview/tool/connectome/matrix_list.o
(107/412) [MOC] release/src/gui/mrview/tool/odf/odf_moc.cpp
(108/412) [CC] release/src/dwi/tractography/GT/particlegrid.o
(109/412) [CC] release/cmd/tcksift.o
(110/412) [CC] release/cmd/mrtransform.o
(111/412) [CC] release/src/dwi/tractography/SIFT/track_index_range.o
(112/412) [CC] release/cmd/dwiextract.o
(113/412) [CC] release/cmd/mrcat.o
(114/412) [CC] release/cmd/warpinit.o
(115/412) [CC] release/src/dwi/tractography/SIFT2/tckfactor.o
(116/412) [CC] release/lib/file/ofstream.o
(117/412) [CC] release/src/gui/mrview/colourmap_button.o
(118/412) [CC] release/src/dwi/shells.o
(119/412) [CC] release/lib/app.o
(120/412) [CC] release/cmd/mrview.o
(121/412) [MOC] release/src/gui/dwi/render_frame_moc.cpp
(122/412) [CC] release/cmd/fod2fixel.o
(123/412) [CC] release/cmd/mrinfo.o
(124/412) [CC] release/cmd/tsfthreshold.o
(125/412) [CC] release/src/gui/shapes/cube.o
(126/412) [CC] release/lib/file/dicom/mapper.o
(127/412) [CC] release/src/gui/mrview/tool/connectome/node.o
(128/412) [CC] release/src/dwi/tractography/seeding/basic.o
(129/412) [CC] release/cmd/tckmap.o
(130/412) [CC] release/src/gui/mrview/tool/tractography/tractogram.o
(131/412) [CC] release/lib/header.o
(132/412) [MOC] release/src/gui/mrview/adjust_button_moc.cpp
(133/412) [CC] release/src/gui/mrview/adjust_button_moc.o
(134/412) [CC] release/lib/image_io/fetch_store.o
(135/412) [MOC] release/src/gui/opengl/lighting_moc.cpp
(136/412) [CC] release/src/gui/opengl/lighting_moc.o
(137/412) [CC] release/src/dwi/tractography/connectome/matrix.o
(138/412) [CC] release/src/dwi/tractography/seeding/list.o
(139/412) [CC] release/lib/bitset.o
(140/412) [CC] release/src/dwi/tractography/GT/internalenergy.o
(141/412) [CC] release/lib/file/dicom/quick_scan.o
(142/412) [CC] release/cmd/dcmedit.o
(143/412) [CC] release/cmd/shbasis.o
(144/412) [CC] release/src/gui/lighting_dock_moc.o
(145/412) [CC] release/cmd/sh2power.o
(146/412) [MOC] release/src/gui/shview/render_window_moc.cpp
(147/412) [CC] release/src/gui/shview/render_window_moc.o
(148/412) [MOC] release/src/gui/mrview/tool/screen_capture_moc.cpp
(149/412) [CC] release/src/dwi/tractography/connectome/exemplar.o
(150/412) [CC] release/src/gui/cursor.o
(151/412) [CC] release/src/mesh/mesh.o
(152/412) [CC] release/cmd/tsfsmooth.o
(153/412) [CC] release/src/dwi/tractography/file_base.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include release/src/gui/shview/render_window_moc.cpp -o release/src/gui/shview/render_window_moc.o:
In file included from src/gui/dwi/render_frame.h:21:0,
from release/src/gui/shview/../../../../src/gui/shview/render_window.h:19,
from release/src/gui/shview/render_window_moc.cpp:9:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from release/src/gui/shview/../../../../src/gui/shview/render_window.h:19:0,
from release/src/gui/shview/render_window_moc.cpp:9:
src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
(154/412) [RCC] src/gui/mrview/icons.cpp
(155/412) [MOC] release/src/gui/mrview/tool/connectome/connectome_moc.cpp
(156/412) [CC] release/src/gui/mrview/icons.o
(157/412) [CC] release/src/gui/mrview/tool/connectome/connectome_moc.o
(158/412) [CC] release/src/dwi/tractography/SIFT2/reg_calculator.o
(159/412) [CC] release/cmd/shconv.o
(160/412) [CC] release/lib/formats/dicom.o
(161/412) [MOC] release/src/gui/dialog/image_properties_moc.cpp
(162/412) [CC] release/src/gui/mrview/adjust_button.o
(163/412) [CC] release/src/dwi/tractography/SIFT/sifter.o
(164/412) [CC] release/cmd/fixel2sh.o
(165/412) [CC] release/src/gui/projection.o
(166/412) [CC] release/cmd/msdwi2fod.o
(167/412) [CC] release/lib/stride.o
(168/412) [CC] release/cmd/dwinormalise.o
(169/412) [CC] release/cmd/warpcorrect.o
(170/412) [CC] release/src/dwi/tractography/mapping/twi_stats.o
(171/412) [MOC] release/src/gui/mrview/tool/tractography/track_scalar_file_moc.cpp
(172/412) [CC] release/cmd/dirgen.o
(173/412) [CC] release/cmd/peaks2amp.o
(174/412) [CC] release/src/connectome/config/config.o
(175/412) [CC] release/cmd/tckedit.o
(176/412) [CC] release/src/gui/mrview/tool/odf/preview.o
(177/412) [CC] release/cmd/mrstats.o
(178/412) [CC] release/src/gui/shapes/cylinder.o
(179/412) [CC] release/cmd/dirsplit.o
(180/412) [CC] release/lib/math/bessel.o
(181/412) [MOC] release/src/gui/color_button_moc.cpp
(182/412) [CC] release/src/dwi/tractography/SIFT2/streamline_stats.o
(183/412) [CC] release/cmd/dirflip.o
(184/412) [CC] release/src/dwi/tractography/tracking/tractography.o
(185/412) [CC] release/cmd/tckglobal.o
(186/412) [CC] release/lib/stats.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include src/gui/mrview/tool/odf/preview.cpp -o release/src/gui/mrview/tool/odf/preview.o:
In file included from src/gui/dwi/render_frame.h:21:0,
from src/gui/mrview/tool/odf/preview.h:19,
from src/gui/mrview/tool/odf/preview.cpp:16:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from src/gui/mrview/tool/odf/preview.h:19:0,
from src/gui/mrview/tool/odf/preview.cpp:16:
src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
(187/412) [CC] release/src/gui/mrview/tool/odf/item.o
(188/412) [CC] release/src/dwi/tractography/roi.o
(189/412) [CC] release/src/gui/mrview/tool/overlay.o
(190/412) [CC] release/cmd/label2mesh.o
(191/412) [CC] release/src/gui/mrview/tool/odf/odf_moc.o
(192/412) [CC] release/lib/image_io/gz.o
(193/412) [CC] release/src/gui/dialog/image_properties_moc.o
(194/412) [CC] release/src/gui/mrview/tool/roi_editor/roi.o
(195/412) [MOC] release/src/gui/mrview/tool/overlay_moc.cpp
(196/412) [CC] release/src/gui/mrview/tool/overlay_moc.o
(197/412) [CC] release/src/gui/mrview/spin_box_moc.o
(198/412) [CC] release/cmd/fixelcfestats.o
(199/412) [CC] release/src/gui/mrview/tool/connectome/shaders.o
(200/412) [CC] release/src/dwi/tractography/SIFT/sift.o
(201/412) [MOC] release/src/gui/mrview/tool/vector_moc.cpp
(202/412) [CC] release/src/gui/mrview/tool/vector_moc.o
(203/412) [CC] release/cmd/sh2peaks.o
(204/412) [CC] release/src/dwi/tractography/seeding/seeding.o
(205/412) [CC] release/lib/formats/mrtrix_gz.o
(206/412) [CC] release/cmd/sh2response.o
(207/412) [CC] release/src/gui/mrview/tool/odf/model.o
(208/412) [CC] release/lib/formats/nifti1_gz.o
(209/412) [CC] release/src/gui/mrview/window.o
(210/412) [CC] release/lib/file/config.o
(211/412) [CC] release/src/gui/mrview/tool/tractography/track_scalar_file_moc.o
(212/412) [CC] release/src/dwi/tractography/connectome/extract.o
(213/412) [MOC] release/src/gui/mrview/displayable_moc.cpp
(214/412) [CC] release/src/gui/mrview/displayable_moc.o
(215/412) [MOC] release/src/gui/mrview/mode/ortho_moc.cpp
(216/412) [CC] release/cmd/transformcalc.o
(217/412) [CC] release/src/gui/mrview/tool/roi_editor/roi_moc.o
(218/412) [CC] release/cmd/dwi2adc.o
(219/412) [CC] release/src/gui/mrview/volume.o
(220/412) [CC] release/src/gui/dwi/render_frame_moc.o
(221/412) [CC] release/src/gui/mrview/tool/roi_editor/item.o
(222/412) [CC] release/src/dwi/gradient.o
(223/412) [CC] release/src/gui/mrview/displayable.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include release/src/gui/dwi/render_frame_moc.cpp -o release/src/gui/dwi/render_frame_moc.o:
In file included from release/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:21:0,
from release/src/gui/dwi/render_frame_moc.cpp:9:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from release/src/gui/dwi/render_frame_moc.cpp:9:0:
release/src/gui/dwi/../../../../src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
release/src/gui/dwi/../../../../src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
(224/412) [CC] release/src/dwi/tractography/ACT/act.o
(225/412) [CC] release/src/dwi/tractography/mapping/mapper.o
(226/412) [CC] release/lib/image_io/ram.o
(227/412) [CC] release/lib/file/dicom/select_cmdline.o
(228/412) [CC] release/lib/formats/mgz.o
(229/412) [CC] release/cmd/fixelcorrespondence.o
(230/412) [CC] release/src/gui/mrview/colourmap_button_moc.o
(231/412) [CC] release/lib/image_io/mosaic.o
(232/412) [RCC] src/gui/shview/icons.cpp
(233/412) [CC] release/src/gui/shview/icons.o
(234/412) [CC] release/cmd/fixelthreshold.o
(235/412) [CC] release/cmd/mrresize.o
(236/412) [CC] release/src/gui/mrview/mode/ortho_moc.o
(237/412) [CC] release/src/gui/dialog/image_properties.o
(238/412) [CC] release/src/gui/mrview/tool/tractography/tractography.o
(239/412) [CC] release/lib/file/dicom/patient.o
(240/412) [CC] release/cmd/dwi2noise.o
(241/412) [CC] release/src/dwi/directions/predefined.o
(242/412) [CC] release/cmd/dwi2fod.o
(243/412) [CC] release/lib/file/dicom/study.o
(244/412) [CC] release/src/dwi/tractography/editing/worker.o
(245/412) [CC] release/src/dwi/tractography/editing/receiver.o
(246/412) [CC] release/cmd/5tt2gmwmi.o
(247/412) [CC] release/cmd/tcksift2.o
(248/412) [CC] release/src/gui/color_button.o
(249/412) [CC] release/cmd/mrconvert.o
(250/412) [CC] release/lib/file/name_parser.o
(251/412) [CC] release/cmd/amp2sh.o
(252/412) [CC] release/src/dwi/tractography/SIFT2/coeff_optimiser.o
(253/412) [CC] release/cmd/tckinfo.o
(254/412) [CC] release/src/connectome/lut.o
(255/412) [CC] release/src/gui/mrview/tool/connectome/node_overlay.o
(256/412) [CC] release/src/gui/mrview/tool/odf/preview_moc.o
(257/412) [CC] release/cmd/mrclusterstats.o
(258/412) [CC] release/src/gui/mrview/mode/slice.o
(259/412) [CC] release/lib/thread.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include release/src/gui/mrview/tool/odf/preview_moc.cpp -o release/src/gui/mrview/tool/odf/preview_moc.o:
In file included from src/gui/dwi/render_frame.h:21:0,
from release/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19,
from release/src/gui/mrview/tool/odf/preview_moc.cpp:9:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from release/src/gui/mrview/tool/odf/../../../../../../src/gui/mrview/tool/odf/preview.h:19:0,
from release/src/gui/mrview/tool/odf/preview_moc.cpp:9:
src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
(260/412) [CC] release/lib/formats/mrtrix_sparse.o
(261/412) [CC] release/src/dwi/tractography/SIFT/proc_mask.o
(262/412) [CC] release/src/gui/mrview/tool/view.o
(263/412) [CC] release/src/gui/mrview/mode/lightbox.o
(264/412) [CC] release/src/gui/color_button_moc.o
(265/412) [CC] release/src/gui/shapes/halfsphere.o
(266/412) [CC] release/src/dwi/tractography/connectome/tck2nodes.o
(267/412) [CC] release/src/dwi/tractography/mapping/voxel.o
(268/412) [CC] release/src/gui/mrview/tool/odf/odf.o
(269/412) [CC] release/cmd/fixelstats.o
(270/412) [CC] release/cmd/fixel2tsf.o
(271/412) [CC] release/lib/formats/mgh.o
(272/412) [CC] release/cmd/tsfmult.o
(273/412) [MOC] release/src/gui/gui_moc.cpp
(274/412) [CC] release/src/gui/gui_moc.o
(275/412) [CC] release/lib/image_io/default.o
(276/412) [CC] release/cmd/tckstats.o
(277/412) [CC] release/src/dwi/tractography/SIFT2/line_search.o
(278/412) [CC] release/lib/datatype.o
(279/412) [CC] release/src/dwi/tractography/SIFT2/fixel_updater.o
(280/412) [CC] release/src/gui/mrview/gui_image.o
(281/412) [CC] release/lib/file/dicom/element.o
(282/412) [CC] release/src/gui/mrview/tool/screen_capture_moc.o
(283/412) [CC] release/cmd/voxel2fixel.o
(284/412) [CC] release/src/gui/dialog/list.o
(285/412) [CC] release/src/gui/dialog/file.o
(286/412) [CC] release/src/gui/mrview/combo_box_error.o
(287/412) [MOC] release/src/gui/mrview/mode/lightbox_moc.cpp
(288/412) [CC] release/src/gui/mrview/mode/lightbox_moc.o
(289/412) [CC] release/lib/file/dicom/series.o
g++ -c -std=c++11 -pthread -fPIC -march=native -O2 -march=x86-64 -mtune=generic -DMRTRIX_WORD64 -Wall -O2 -DNDEBUG -Isrc -Icmd -I./lib -Icmd -m64 -pipe -O2 -Wall -W -D_REENTRANT -DQT_NO_DEBUG -DQT_SVG_LIB -DQT_OPENGL_LIB -DQT_GUI_LIB -DQT_CORE_LIB -DQT_SHARED -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/mkspecs/linux-g++-64 -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtCore -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtGui -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtOpenGL -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include/QtSvg -isystem /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include -isystem /usr/X11R6/include src/gui/mrview/tool/odf/odf.cpp -o release/src/gui/mrview/tool/odf/odf.o:
In file included from src/gui/mrview/tool/odf/odf.cpp:19:0:
src/dwi/directions/set.h:67:11: warning: unused parameter that [-Wunused-parameter]
Set (const Set& that) = default;
^
In file included from src/gui/mrview/tool/odf/odf.cpp:22:0:
src/gui/dwi/render_frame.h: In member function void MR::GUI::DWI::RenderFrame::set_dixels(const MR::DWI::Directions::Set&):
src/gui/dwi/render_frame.h:104:65: note: synthesized method MR::DWI::Directions::Set::Set(const MR::DWI::Directions::Set&) first required here
dirs.reset (new MR::DWI::Directions::Set (directions));
^
(290/412) [CC] release/lib/file/mgh_utils.o
(291/412) [CC] release/src/gui/mrview/tool/connectome/node_list.o
(292/412) [CC] release/src/dwi/tractography/editing/editing.o
(293/412) [CC] release/cmd/tckconvert.o
(294/412) [CC] release/cmd/mrcrop.o
(295/412) [CC] release/src/dwi/tractography/mapping/fixel_td_map.o
(296/412) [CC] release/lib/version.o
(297/412) [CC] release/cmd/label2colour.o
(298/412) [CC] release/cmd/connectome2tck.o
(299/412) [CC] release/src/dwi/tractography/GT/mhsampler.o
(300/412) [CC] release/cmd/maskfilter.o
(301/412) [CC] release/lib/progressbar.o
(302/412) [CC] release/src/dwi/tractography/GT/gt.o
(303/412) [CC] release/lib/math/SH.o
(304/412) [CC] release/cmd/tensor2metric.o
(305/412) [CC] release/lib/formats/xds.o
(306/412) [CC] release/cmd/fixel2voxel.o
(307/412) [CC] release/lib/file/mmap.o
(308/412) [CC] release/src/gui/opengl/lighting.o
(309/412) [MOC] release/src/gui/mrview/window_moc.cpp
(310/412) [CC] release/src/gui/mrview/window_moc.o
(311/412) [MOC] release/src/gui/mrview/tool/connectome/selection_moc.cpp
(312/412) [CC] release/src/gui/mrview/tool/connectome/selection_moc.o
(313/412) [CC] release/lib/file/nifti1_utils.o
(314/412) [CC] release/cmd/tsfinfo.o
(315/412) [CC] release/src/gui/mrview/tool/roi_editor/undoentry.o
(316/412) [CC] release/src/gui/mrview/colourmap.o
(317/412) [CC] release/src/gui/opengl/gl.o
(318/412) [CC] release/src/dwi/tractography/connectome/connectome.o
(319/412) [LD] release/lib/libmrtrix.so
(320/412) [LB] release/bin/tsfmult
(321/412) [LB] release/bin/tcksample
(322/412) [LB] release/bin/dcminfo
(323/412) [LB] release/bin/fod2dec
(324/412) [LB] release/bin/fixelstats
(325/412) [LB] release/bin/dwi2tensor
(326/412) [LB] release/bin/mrconvert
(327/412) [LB] release/bin/label2mesh
(328/412) [LB] release/bin/dwi2adc
(329/412) [LB] release/bin/warpinit
(330/412) [LB] release/bin/shconv
(331/412) [LB] release/bin/fixelcorrespondence
(332/412) [LB] release/bin/mrmesh
(333/412) [LB] release/bin/sh2response
(334/412) [LB] release/bin/tckgen
(335/412) [LB] release/bin/mrthreshold
(336/412) [LB] release/bin/meshconvert
(337/412) [LB] release/bin/dwi2fod
(338/412) [LB] release/bin/peaks2amp
(339/412) [LB] release/bin/fod2fixel
(340/412) [LB] release/bin/meshfilter
(341/412) [LB] release/bin/afdconnectivity
(342/412) [LB] release/bin/msdwi2fod
(343/412) [LB] release/bin/maskfilter
(344/412) [LB] release/bin/mrtransform
(345/412) [LB] release/bin/dwinormalise
(346/412) [LB] release/bin/transformcalc
(347/412) [LB] release/bin/tsfthreshold
(348/412) [LB] release/bin/mrfilter
(349/412) [LB] release/bin/5ttedit
(350/412) [LB] release/bin/mrpad
(351/412) [LB] release/bin/tcknormalise
(352/412) [LB] release/bin/5tt2vis
(353/412) [LB] release/bin/amp2sh
(354/412) [LB] release/bin/dwi2mask
(355/412) [LB] release/bin/dcmedit
(356/412) [LB] release/bin/tckconvert
(357/412) [LB] release/bin/dwi2noise
(358/412) [LB] release/bin/mrinfo
(359/412) [LB] release/bin/fixeldivide
(360/412) [LB] release/bin/label2colour
(361/412) [LB] release/bin/tsfsmooth
(362/412) [LB] release/bin/dwiextract
(363/412) [LB] release/bin/shbasis
(364/412) [LB] release/bin/mrcalc
(365/412) [LB] release/bin/tcksift2
(366/412) [LB] release/bin/sh2power
(367/412) [LB] release/bin/tckglobal
(368/412) [LB] release/bin/fixel2sh
(369/412) [LB] release/bin/5tt2gmwmi
(370/412) [LB] release/bin/fixel2tsf
(371/412) [LB] release/bin/fixelcfestats
(372/412) [LB] release/bin/mrresize
(373/412) [LB] release/bin/voxel2fixel
(374/412) [LB] release/bin/tckinfo
(375/412) [LB] release/bin/labelconfig
(376/412) [LB] release/bin/mrclusterstats
(377/412) [LB] release/bin/mrcrop
(378/412) [LB] release/bin/tsfdivide
(379/412) [LB] release/bin/mesh2pve
(380/412) [LB] release/bin/warpcorrect
(381/412) [LB] release/bin/mrcat
(382/412) [LB] release/bin/fixelthreshold
(383/412) [LB] release/bin/mrmath
(384/412) [LB] release/bin/sh2peaks
(385/412) [LB] release/bin/shview
(386/412) [LB] release/bin/tcksift
(387/412) [MOC] release/src/gui/mrview/tool/tractography/tractography_moc.cpp
(388/412) [CC] release/cmd/dirstat.o
(389/412) [CC] release/src/gui/mrview/tool/tractography/tractography_moc.o
(390/412) [LB] release/bin/mrstats
(391/412) [CC] release/cmd/fixelmult.o
(392/412) [LB] release/bin/tsfinfo
(393/412) [CC] release/src/dwi/directions/file.o
(394/412) [LB] release/bin/tensor2metric
(395/412) [CC] release/src/dwi/tractography/weights.o
(396/412) [LB] release/bin/tckedit
(397/412) [LB] release/bin/tckstats
(398/412) [LB] release/bin/tckmap
(399/412) [CC] release/cmd/sh2amp.o
(400/412) [CC] release/cmd/dirorder.o
(401/412) [LB] release/bin/dirgen
(402/412) [LB] release/bin/dirmerge
(403/412) [LB] release/bin/dirsplit
(404/412) [LB] release/bin/dirflip
(405/412) [LB] release/bin/dirorder
(406/412) [LB] release/bin/tck2connectome
(407/412) [LB] release/bin/connectome2tck
(408/412) [LB] release/bin/fixelmult
(409/412) [LB] release/bin/mrview
(410/412) [LB] release/bin/dirstat
(411/412) [LB] release/bin/fixel2voxel
(412/412) [LB] release/bin/sh2amp
make -j 1
== 2016-12-10 11:48:14,889 build_log.py:216 INFO testing...
== 2016-12-10 11:48:14,889 easyblock.py:2271 INFO Starting test step
== 2016-12-10 11:48:14,890 easyblock.py:2274 INFO Running method test_step part of step test
== 2016-12-10 11:48:14,891 build_log.py:216 INFO installing...
== 2016-12-10 11:48:14,891 easyblock.py:2271 INFO Starting install step
== 2016-12-10 11:48:14,892 easyblock.py:2274 INFO Running method stage_install_step part of step install
== 2016-12-10 11:48:14,892 easyblock.py:2274 INFO Running method make_installdir part of step install
== 2016-12-10 11:48:14,893 easyblock.py:817 INFO Found old directory /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
== 2016-12-10 11:48:14,936 filetools.py:1072 INFO Path /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20 successfully removed.
== 2016-12-10 11:48:14,937 easyblock.py:824 INFO Removed old directory /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
== 2016-12-10 11:48:14,937 filetools.py:967 INFO Creating directory /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20 (parents: True, set_gid: False, sticky: False)
== 2016-12-10 11:48:14,938 easyblock.py:2274 INFO Running method install_step part of step install
== 2016-12-10 11:48:15,102 build_log.py:216 INFO taking care of extensions...
== 2016-12-10 11:48:15,103 easyblock.py:2271 INFO Starting extensions step
== 2016-12-10 11:48:15,103 easyblock.py:2274 INFO Running method extensions_step part of step extensions
== 2016-12-10 11:48:15,104 build_log.py:216 INFO postprocessing...
== 2016-12-10 11:48:15,104 easyblock.py:2271 INFO Starting postproc step
== 2016-12-10 11:48:15,105 easyblock.py:2274 INFO Running method post_install_step part of step postproc
== 2016-12-10 11:48:15,105 build_log.py:216 INFO sanity checking...
== 2016-12-10 11:48:15,105 easyblock.py:2271 INFO Starting sanitycheck step
== 2016-12-10 11:48:15,106 easyblock.py:2274 INFO Running method sanity_check_step part of step sanitycheck
== 2016-12-10 11:48:15,106 easyblock.py:1922 INFO Using specified sanity check paths: {'files': ['bin/afdconnectivity', 'bin/dirstat', 'bin/fixel2voxel', 'bin/label2mesh', 'bin/mrcrop', 'bin/msdwi2fod', 'bin/tckedit', 'bin/tensor2metric'], 'dirs': []}
== 2016-12-10 11:48:15,107 easyblock.py:1939 INFO Using specified sanity check commands: []
== 2016-12-10 11:48:15,108 filetools.py:967 INFO Creating directory /scratch/eb-Cgfdsv/tmpCDvsR_/all/MRtrix3 (parents: True, set_gid: False, sticky: False)
== 2016-12-10 11:48:15,111 easyblock.py:2136 INFO Module file /scratch/eb-Cgfdsv/tmpCDvsR_/all/MRtrix3/0.3.14-goolf-1.7.20 written: #%Module
proc ModulesHelp { } {
puts stderr { MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses,
from various forms of tractography through to next-generation group-level analyses. - Homepage: http://www.mrtrix.org/
}
}
module-whatis {Description: MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses,
from various forms of tractography through to next-generation group-level analyses. - Homepage: http://www.mrtrix.org/}
set root /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
conflict MRtrix3
if { ![ is-loaded goolf/1.7.20 ] } {
module load goolf/1.7.20
}
if { ![ is-loaded Python/2.7.11-goolf-1.7.20 ] } {
module load Python/2.7.11-goolf-1.7.20
}
if { ![ is-loaded Eigen/3.2.8-goolf-1.7.20 ] } {
module load Eigen/3.2.8-goolf-1.7.20
}
if { ![ is-loaded zlib/.1.2.8-goolf-1.7.20 ] } {
module load zlib/.1.2.8-goolf-1.7.20
}
if { ![ is-loaded Qt/4.8.6-goolf-1.7.20 ] } {
module load Qt/4.8.6-goolf-1.7.20
}
prepend-path LD_LIBRARY_PATH $root/lib
prepend-path LIBRARY_PATH $root/lib
prepend-path PATH $root/bin
setenv EBROOTMRTRIX3 "$root"
setenv EBVERSIONMRTRIX3 "0.3.14"
setenv EBDEVELMRTRIX3 "$root/easybuild/MRtrix3-0.3.14-goolf-1.7.20-easybuild-devel"
# Built with EasyBuild version 3.0.1
== 2016-12-10 11:48:15,112 filetools.py:967 INFO Creating directory /scratch/eb-Cgfdsv/tmpCDvsR_/bio/MRtrix3 (parents: True, set_gid: False, sticky: False)
== 2016-12-10 11:48:15,383 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:15,384 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:15,384 environment.py:97 INFO Environment variable PATH set to /scratch/rpath-test/apps/EasyBuild/3.0.1/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/lib64/qt-3.3/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:/scicore/home/scicore/easybuild/bin:/scicore/home/scicore/easybuild/bin (previous value: '/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/bin:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/bin:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/bin:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/bin:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/bin:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/bin:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/bin:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/bin:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/bin:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/bin:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/bin:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/bin:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/bin:/scratch/rpath-test/apps/GCC/4.8.4/bin:/scratch/rpath-test/apps/binutils/2.25.1/bin:/scratch/rpath-test/apps/EasyBuild/3.0.1/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/lib64/qt-3.3/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:/scicore/home/scicore/easybuild/bin:/scicore/home/scicore/easybuild/bin')
== 2016-12-10 11:48:15,385 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:15,385 environment.py:97 INFO Environment variable _ModuleTable004_ set to c29mdC9tb2R1bGVzL21hdGg6L3NjaWNvcmUvc29mdC9tb2R1bGVzL21waTovc2NpY29yZS9zb2Z0L21vZHVsZXMvbnVtbGliOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9wZXJmOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9waHlzOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9zeXN0ZW06L3NjaWNvcmUvc29mdC9tb2R1bGVzL3Rvb2xjaGFpbjovc2NpY29yZS9zb2Z0L21vZHVsZXMvdG9vbHM6L3NjaWNvcmUvc29mdC9tb2R1bGVzL3ZpcyIsWyJ2ZXJzaW9uIl09Mix9 (previous value: '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')
== 2016-12-10 11:48:15,385 environment.py:97 INFO Environment variable _ModuleTable_Sz_ set to 4 (previous value: '15')
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== 2016-12-10 11:48:15,386 environment.py:97 INFO Environment variable _ModuleTable003_ set to XT0iRWFzeUJ1aWxkLzMuMC4xIixbImxvYWRPcmRlciJdPTEscHJvcFQ9e30sWyJzaG9ydCJdPSJFYXN5QnVpbGQiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii9zY3JhdGNoL3JwYXRoLXRlc3QvbW9kdWxlcy9hbGwiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL3NjaWNvcmUvc29mdC9tb2R1bGVzL2Jhc2U6L3NjaWNvcmUvc29mdC9tb2R1bGVzL2Jpbzovc2NpY29yZS9zb2Z0L21vZHVsZXMvY2hlbTovc2NpY29yZS9zb2Z0L21vZHVsZXMvY29tcGlsZXI6L3NjaWNvcmUvc29mdC9tb2R1bGVzL2RhdGE6L3NjaWNvcmUvc29mdC9tb2R1bGVzL2RldmVsOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9sYW5nOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9saWI6L3NjaWNvcmUv (previous value: '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')
== 2016-12-10 11:48:15,386 environment.py:97 INFO Environment variable MODULEPATH set to /scratch/rpath-test/modules/all (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all')
== 2016-12-10 11:48:15,387 environment.py:97 INFO Environment variable _LMFILES_ set to /scratch/rpath-test/modules/all/EasyBuild/3.0.1 (previous value: '/scratch/rpath-test/modules/all/EasyBuild/3.0.1:/scratch/rpath-test/modules/all/binutils/2.25.1:/scratch/rpath-test/modules/all/GCC/4.8.4:/scratch/rpath-test/modules/all/numactl/2.0.10-GCC-4.8.4:/scratch/rpath-test/modules/all/hwloc/1.10.1-GCC-4.8.4:/scratch/rpath-test/modules/all/OpenMPI/1.8.4-GCC-4.8.4:/scratch/rpath-test/modules/all/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0:/scratch/rpath-test/modules/all/gompi/1.7.20:/scratch/rpath-test/modules/all/FFTW/3.3.4-gompi-1.7.20:/scratch/rpath-test/modules/all/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0:/scratch/rpath-test/modules/all/goolf/1.7.20:/scratch/rpath-test/modules/all/bzip2/.1.0.6-goolf-1.7.20:/scratch/rpath-test/modules/all/libreadline/.6.2-goolf-1.7.20:/scratch/rpath-test/modules/all/ncurses/.5.9-goolf-1.7.20:/scratch/rpath-test/modules/all/Tcl/.8.6.4-goolf-1.7.20:/scratch/rpath-test/modules/all/SQLite/3.9.2-goolf-1.7.20:/scratch/rpath-test/modules/all/Tk/.8.6.4-goolf-1.7.20:/scratch/rpath-test/modules/all/GMP/6.1.0-goolf-1.7.20:/scratch/rpath-test/modules/all/Python/2.7.11-goolf-1.7.20:/scratch/rpath-test/modules/all/Eigen/3.2.8-goolf-1.7.20:/scratch/rpath-test/modules/all/zlib/.1.2.8-goolf-1.7.20:/scratch/rpath-test/modules/all/Qt/4.8.6-goolf-1.7.20')
== 2016-12-10 11:48:15,387 environment.py:97 INFO Environment variable LOADEDMODULES set to EasyBuild/3.0.1 (previous value: 'EasyBuild/3.0.1:binutils/2.25.1:GCC/4.8.4:numactl/2.0.10-GCC-4.8.4:hwloc/1.10.1-GCC-4.8.4:OpenMPI/1.8.4-GCC-4.8.4:OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0:gompi/1.7.20:FFTW/3.3.4-gompi-1.7.20:ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0:goolf/1.7.20:bzip2/.1.0.6-goolf-1.7.20:libreadline/.6.2-goolf-1.7.20:ncurses/.5.9-goolf-1.7.20:Tcl/.8.6.4-goolf-1.7.20:SQLite/3.9.2-goolf-1.7.20:Tk/.8.6.4-goolf-1.7.20:GMP/6.1.0-goolf-1.7.20:Python/2.7.11-goolf-1.7.20:Eigen/3.2.8-goolf-1.7.20:zlib/.1.2.8-goolf-1.7.20:Qt/4.8.6-goolf-1.7.20')
== 2016-12-10 11:48:15,387 environment.py:97 INFO Environment variable LMOD_DEFAULT_MODULEPATH set to /scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis')
== 2016-12-10 11:48:15,388 environment.py:97 INFO Environment variable _ModuleTable002_ set to 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 (previous value: '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')
== 2016-12-10 11:48:15,538 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2016-12-10 11:48:15,539 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:15,539 modules.py:400 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all
== 2016-12-10 11:48:16,143 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:16,144 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:16,386 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previously undefined)
== 2016-12-10 11:48:16,387 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:16,388 filetools.py:1072 INFO Path /scratch/eb-Cgfdsv/tmpCDvsR_ successfully removed.
== 2016-12-10 11:48:16,389 environment.py:97 INFO Environment variable CPPFLAGS set to -I/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include -I/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/include -I/scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include (previously undefined)
== 2016-12-10 11:48:16,389 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,390 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
== 2016-12-10 11:48:16,390 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2016-12-10 11:48:16,391 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,391 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2016-12-10 11:48:16,391 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,392 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,392 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
== 2016-12-10 11:48:16,393 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,393 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,394 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,394 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:16,394 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:16,395 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,395 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,396 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2016-12-10 11:48:16,396 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,396 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib/libmpi.so (previously undefined)
== 2016-12-10 11:48:16,397 environment.py:97 INFO Environment variable _ModuleTable015_ set to L3NvZnQvbW9kdWxlcy90b29sY2hhaW46L3NjaWNvcmUvc29mdC9tb2R1bGVzL3Rvb2xzOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy92aXMiLFsidmVyc2lvbiJdPTIsfQ== (previous value: 'L3BlcmY6L3NjaWNvcmUvc29mdC9tb2R1bGVzL3BoeXM6L3NjaWNvcmUvc29mdC9tb2R1bGVzL3N5c3RlbTovc2NpY29yZS9zb2Z0L21vZHVsZXMvdG9vbGNoYWluOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy90b29sczovc2NpY29yZS9zb2Z0L21vZHVsZXMvdmlzIixbInZlcnNpb24iXT0yLH0=')
== 2016-12-10 11:48:16,397 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,397 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2016-12-10 11:48:16,397 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,398 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,398 environment.py:97 INFO Environment variable _ModuleTable013_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,398 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,399 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:16,399 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2016-12-10 11:48:16,399 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,400 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,400 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,400 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
== 2016-12-10 11:48:16,400 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2016-12-10 11:48:16,401 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,401 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:16,401 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,402 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,402 environment.py:97 INFO Environment variable _ModuleTable014_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,402 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,403 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
== 2016-12-10 11:48:16,403 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,403 environment.py:97 INFO Environment variable _ModuleTable008_ set to LFsiZGVmYXVsdCJdPTAsWyJmdWxsTmFtZSJdPSJTY2FMQVBBQ0svMi4wLjItZ29tcGktMS43LjIwLU9wZW5CTEFTLTAuMi4xMy1MQVBBQ0stMy41LjAiLFsibG9hZE9yZGVyIl09MTAscHJvcFQ9e30sWyJzaG9ydCJdPSJTY2FMQVBBQ0siLFsic3RhdHVzIl09ImFjdGl2ZSIsfSxUY2w9e1siRk4iXT0iL3NjcmF0Y2gvcnBhdGgtdGVzdC9tb2R1bGVzL2FsbC9UY2wvLjguNi40LWdvb2xmLTEuNy4yMCIsWyJkZWZhdWx0Il09MCxbImZ1bGxOYW1lIl09IlRjbC8uOC42LjQtZ29vbGYtMS43LjIwIixbImxvYWRPcmRlciJdPTE1LHByb3BUPXt9LFsic2hvcnQiXT0iVGNsIixbInN0YXR1cyJdPSJhY3RpdmUiLH0sVGs9e1siRk4iXT0iL3NjcmF0Y2gvcnBhdGgtdGVzdC9tb2R1bGVz (previous value: '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')
== 2016-12-10 11:48:16,404 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,404 environment.py:97 INFO Environment variable _ModuleTable002_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,404 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,404 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,405 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:16,405 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:16,405 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib (previously undefined)
== 2016-12-10 11:48:16,406 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-12-10 11:48:16,406 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,406 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,407 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,407 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
== 2016-12-10 11:48:16,407 environment.py:97 INFO Environment variable _ModuleTable007_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,407 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,408 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:16,408 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
== 2016-12-10 11:48:16,408 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,409 environment.py:97 INFO Environment variable _ModuleTable001_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,409 environment.py:97 INFO Environment variable _ModuleTable009_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,409 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,410 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,410 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,410 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:16,410 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,411 environment.py:97 INFO Environment variable LMOD_DEFAULT_MODULEPATH set to /scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis')
== 2016-12-10 11:48:16,411 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2016-12-10 11:48:16,411 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,412 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2016-12-10 11:48:16,412 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,412 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,413 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,413 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib (previously undefined)
== 2016-12-10 11:48:16,413 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:16,413 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,414 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,414 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
== 2016-12-10 11:48:16,414 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:16,415 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2016-12-10 11:48:16,415 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
== 2016-12-10 11:48:16,415 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:16,416 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2016-12-10 11:48:16,416 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:16,416 environment.py:97 INFO Environment variable _ModuleTable011_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,417 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,417 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,417 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-10 11:48:16,417 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include -I/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/include -I/scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include (previously undefined)
== 2016-12-10 11:48:16,418 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2016-12-10 11:48:16,418 environment.py:97 INFO Environment variable MODULEPATH set to /scratch/rpath-test/modules/all (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all')
== 2016-12-10 11:48:16,418 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/include (previously undefined)
== 2016-12-10 11:48:16,419 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,419 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,419 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,420 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,420 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
== 2016-12-10 11:48:16,420 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,420 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,421 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:16,421 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,421 environment.py:97 INFO Environment variable _ModuleTable005_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,422 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined)
== 2016-12-10 11:48:16,422 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
== 2016-12-10 11:48:16,422 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:16,423 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:16,423 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,423 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2016-12-10 11:48:16,423 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-10 11:48:16,424 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2016-12-10 11:48:16,424 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib/libmpi.so (previously undefined)
== 2016-12-10 11:48:16,424 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,425 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:16,425 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-10 11:48:16,425 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,426 environment.py:97 INFO Environment variable _ModuleTable006_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,426 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2016-12-10 11:48:16,426 environment.py:97 INFO Environment variable MPI_INC_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/include (previously undefined)
== 2016-12-10 11:48:16,426 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-12-10 11:48:16,427 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,427 environment.py:97 INFO Environment variable _ModuleTable012_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,427 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,428 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2016-12-10 11:48:16,428 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:16,428 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2016-12-10 11:48:16,429 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:16,429 environment.py:97 INFO Environment variable _ModuleTable004_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,429 environment.py:97 INFO Environment variable _ModuleTable010_ set to 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 (previous value: 'cGF0aC10ZXN0L21vZHVsZXMvYWxsL2J6aXAyLy4xLjAuNi1nb29sZi0xLjcuMjAiLFsiZGVmYXVsdCJdPTAsWyJmdWxsTmFtZSJdPSJiemlwMi8uMS4wLjYtZ29vbGYtMS43LjIwIixbImxvYWRPcmRlciJdPTEyLHByb3BUPXt9LFsic2hvcnQiXT0iYnppcDIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSxnb21waT17WyJGTiJdPSIvc2NyYXRjaC9ycGF0aC10ZXN0L21vZHVsZXMvYWxsL2dvbXBpLzEuNy4yMCIsWyJkZWZhdWx0Il09MCxbImZ1bGxOYW1lIl09ImdvbXBpLzEuNy4yMCIsWyJsb2FkT3JkZXIiXT04LHByb3BUPXt9LFsic2hvcnQiXT0iZ29tcGkiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSxnb29sZj17WyJGTiJdPSIvc2NyYXRjaC9ycGF0aC10ZXN0L21vZHVsZXMvYWxs')
== 2016-12-10 11:48:16,430 environment.py:97 INFO Environment variable _ModuleTable003_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,430 environment.py:97 INFO Environment variable LDFLAGS set to -L/scratch/rpath-test/apps/GCC/4.8.4/lib64 -L/scratch/rpath-test/apps/GCC/4.8.4/lib -L/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib -L/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib -L/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib -L/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:16,430 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:16,430 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2016-12-10 11:48:16,431 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2016-12-10 11:48:16,431 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,431 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined)
== 2016-12-10 11:48:16,432 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:16,432 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,432 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,433 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/scratch/rpath-test/apps/GCC/4.8.4/lib64 -L/scratch/rpath-test/apps/GCC/4.8.4/lib -L/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib -L/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib -L/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib -L/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:16,433 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
== 2016-12-10 11:48:16,433 environment.py:97 INFO Environment variable FFT_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:16,433 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2016-12-10 11:48:16,434 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:16,434 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2016-12-10 11:48:16,434 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-10 11:48:16,435 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,435 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:16,435 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:16,436 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:16,436 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:16,437 build_log.py:216 INFO cleaning up...
== 2016-12-10 11:48:16,437 easyblock.py:2271 INFO Starting cleanup step
== 2016-12-10 11:48:16,438 easyblock.py:2274 INFO Running method cleanup_step part of step cleanup
== 2016-12-10 11:48:16,438 easyblock.py:2081 INFO Cleaning up builddir /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20 (in /scicore/home/scicore/easybuild/easyconfigs)
== 2016-12-10 11:48:16,549 filetools.py:1072 INFO Path /scratch/easybuild-user/rpath-builds/MRtrix3/0.3.14/goolf-1.7.20 successfully removed.
== 2016-12-10 11:48:16,550 build_log.py:216 INFO creating module...
== 2016-12-10 11:48:16,550 easyblock.py:2271 INFO Starting module step
== 2016-12-10 11:48:16,551 easyblock.py:2274 INFO Running method make_module_step part of step module
== 2016-12-10 11:48:16,553 easyblock.py:2136 INFO Module file /scratch/rpath-test/modules/all/MRtrix3/0.3.14-goolf-1.7.20 written: #%Module
proc ModulesHelp { } {
puts stderr { MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses,
from various forms of tractography through to next-generation group-level analyses. - Homepage: http://www.mrtrix.org/
}
}
module-whatis {Description: MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses,
from various forms of tractography through to next-generation group-level analyses. - Homepage: http://www.mrtrix.org/}
set root /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
conflict MRtrix3
if { ![ is-loaded goolf/1.7.20 ] } {
module load goolf/1.7.20
}
if { ![ is-loaded Python/2.7.11-goolf-1.7.20 ] } {
module load Python/2.7.11-goolf-1.7.20
}
if { ![ is-loaded Eigen/3.2.8-goolf-1.7.20 ] } {
module load Eigen/3.2.8-goolf-1.7.20
}
if { ![ is-loaded zlib/.1.2.8-goolf-1.7.20 ] } {
module load zlib/.1.2.8-goolf-1.7.20
}
if { ![ is-loaded Qt/4.8.6-goolf-1.7.20 ] } {
module load Qt/4.8.6-goolf-1.7.20
}
prepend-path LD_LIBRARY_PATH $root/lib
prepend-path LIBRARY_PATH $root/lib
prepend-path PATH $root/bin
setenv EBROOTMRTRIX3 "$root"
setenv EBVERSIONMRTRIX3 "0.3.14"
setenv EBDEVELMRTRIX3 "$root/easybuild/MRtrix3-0.3.14-goolf-1.7.20-easybuild-devel"
# Built with EasyBuild version 3.0.1
== 2016-12-10 11:48:16,554 easyblock.py:862 INFO Making devel module...
== 2016-12-10 11:48:16,555 filetools.py:967 INFO Creating directory /scratch/eb-Cgfdsv/tmpCDvsR_/all/MRtrix3 (parents: True, set_gid: False, sticky: False)
== 2016-12-10 11:48:16,558 easyblock.py:2136 INFO Module file /scratch/eb-Cgfdsv/tmpCDvsR_/all/MRtrix3/0.3.14-goolf-1.7.20 written: #%Module
proc ModulesHelp { } {
puts stderr { MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses,
from various forms of tractography through to next-generation group-level analyses. - Homepage: http://www.mrtrix.org/
}
}
module-whatis {Description: MRtrix3 provides a set of tools to perform various types of diffusion MRI analyses,
from various forms of tractography through to next-generation group-level analyses. - Homepage: http://www.mrtrix.org/}
set root /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
conflict MRtrix3
if { ![ is-loaded goolf/1.7.20 ] } {
module load goolf/1.7.20
}
if { ![ is-loaded Python/2.7.11-goolf-1.7.20 ] } {
module load Python/2.7.11-goolf-1.7.20
}
if { ![ is-loaded Eigen/3.2.8-goolf-1.7.20 ] } {
module load Eigen/3.2.8-goolf-1.7.20
}
if { ![ is-loaded zlib/.1.2.8-goolf-1.7.20 ] } {
module load zlib/.1.2.8-goolf-1.7.20
}
if { ![ is-loaded Qt/4.8.6-goolf-1.7.20 ] } {
module load Qt/4.8.6-goolf-1.7.20
}
prepend-path LD_LIBRARY_PATH $root/lib
prepend-path LIBRARY_PATH $root/lib
prepend-path PATH $root/bin
setenv EBROOTMRTRIX3 "$root"
setenv EBVERSIONMRTRIX3 "0.3.14"
setenv EBDEVELMRTRIX3 "$root/easybuild/MRtrix3-0.3.14-goolf-1.7.20-easybuild-devel"
# Built with EasyBuild version 3.0.1
== 2016-12-10 11:48:16,558 filetools.py:967 INFO Creating directory /scratch/eb-Cgfdsv/tmpCDvsR_/bio/MRtrix3 (parents: True, set_gid: False, sticky: False)
== 2016-12-10 11:48:16,803 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:16,804 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:16,805 environment.py:97 INFO Environment variable PATH set to /scratch/rpath-test/apps/EasyBuild/3.0.1/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/lib64/qt-3.3/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:/scicore/home/scicore/easybuild/bin:/scicore/home/scicore/easybuild/bin (previous value: '/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/bin:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/bin:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/bin:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/bin:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/bin:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/bin:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/bin:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/bin:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/bin:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/bin:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/bin:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/bin:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/bin:/scratch/rpath-test/apps/GCC/4.8.4/bin:/scratch/rpath-test/apps/binutils/2.25.1/bin:/scratch/rpath-test/apps/EasyBuild/3.0.1/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/lib64/qt-3.3/bin:/export/soft/lua_lmod/centos6/lmod/lmod/libexec:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/ibutils/bin:/scicore/home/scicore/easybuild/bin:/scicore/home/scicore/easybuild/bin')
== 2016-12-10 11:48:16,805 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:16,805 environment.py:97 INFO Environment variable _ModuleTable004_ set to c29mdC9tb2R1bGVzL21hdGg6L3NjaWNvcmUvc29mdC9tb2R1bGVzL21waTovc2NpY29yZS9zb2Z0L21vZHVsZXMvbnVtbGliOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9wZXJmOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9waHlzOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9zeXN0ZW06L3NjaWNvcmUvc29mdC9tb2R1bGVzL3Rvb2xjaGFpbjovc2NpY29yZS9zb2Z0L21vZHVsZXMvdG9vbHM6L3NjaWNvcmUvc29mdC9tb2R1bGVzL3ZpcyIsWyJ2ZXJzaW9uIl09Mix9 (previous value: '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')
== 2016-12-10 11:48:16,806 environment.py:97 INFO Environment variable _ModuleTable_Sz_ set to 4 (previous value: '15')
== 2016-12-10 11:48:16,806 environment.py:97 INFO Environment variable _ModuleTable001_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,806 environment.py:97 INFO Environment variable _ModuleTable003_ set to 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 (previous value: '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')
== 2016-12-10 11:48:16,807 environment.py:97 INFO Environment variable MODULEPATH set to /scratch/rpath-test/modules/all (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all')
== 2016-12-10 11:48:16,807 environment.py:97 INFO Environment variable _LMFILES_ set to /scratch/rpath-test/modules/all/EasyBuild/3.0.1 (previous value: '/scratch/rpath-test/modules/all/EasyBuild/3.0.1:/scratch/rpath-test/modules/all/binutils/2.25.1:/scratch/rpath-test/modules/all/GCC/4.8.4:/scratch/rpath-test/modules/all/numactl/2.0.10-GCC-4.8.4:/scratch/rpath-test/modules/all/hwloc/1.10.1-GCC-4.8.4:/scratch/rpath-test/modules/all/OpenMPI/1.8.4-GCC-4.8.4:/scratch/rpath-test/modules/all/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0:/scratch/rpath-test/modules/all/gompi/1.7.20:/scratch/rpath-test/modules/all/FFTW/3.3.4-gompi-1.7.20:/scratch/rpath-test/modules/all/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0:/scratch/rpath-test/modules/all/goolf/1.7.20:/scratch/rpath-test/modules/all/bzip2/.1.0.6-goolf-1.7.20:/scratch/rpath-test/modules/all/libreadline/.6.2-goolf-1.7.20:/scratch/rpath-test/modules/all/ncurses/.5.9-goolf-1.7.20:/scratch/rpath-test/modules/all/Tcl/.8.6.4-goolf-1.7.20:/scratch/rpath-test/modules/all/SQLite/3.9.2-goolf-1.7.20:/scratch/rpath-test/modules/all/Tk/.8.6.4-goolf-1.7.20:/scratch/rpath-test/modules/all/GMP/6.1.0-goolf-1.7.20:/scratch/rpath-test/modules/all/Python/2.7.11-goolf-1.7.20:/scratch/rpath-test/modules/all/Eigen/3.2.8-goolf-1.7.20:/scratch/rpath-test/modules/all/zlib/.1.2.8-goolf-1.7.20:/scratch/rpath-test/modules/all/Qt/4.8.6-goolf-1.7.20')
== 2016-12-10 11:48:16,807 environment.py:97 INFO Environment variable LOADEDMODULES set to EasyBuild/3.0.1 (previous value: 'EasyBuild/3.0.1:binutils/2.25.1:GCC/4.8.4:numactl/2.0.10-GCC-4.8.4:hwloc/1.10.1-GCC-4.8.4:OpenMPI/1.8.4-GCC-4.8.4:OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0:gompi/1.7.20:FFTW/3.3.4-gompi-1.7.20:ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0:goolf/1.7.20:bzip2/.1.0.6-goolf-1.7.20:libreadline/.6.2-goolf-1.7.20:ncurses/.5.9-goolf-1.7.20:Tcl/.8.6.4-goolf-1.7.20:SQLite/3.9.2-goolf-1.7.20:Tk/.8.6.4-goolf-1.7.20:GMP/6.1.0-goolf-1.7.20:Python/2.7.11-goolf-1.7.20:Eigen/3.2.8-goolf-1.7.20:zlib/.1.2.8-goolf-1.7.20:Qt/4.8.6-goolf-1.7.20')
== 2016-12-10 11:48:16,808 environment.py:97 INFO Environment variable LMOD_DEFAULT_MODULEPATH set to /scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis')
== 2016-12-10 11:48:16,808 environment.py:97 INFO Environment variable _ModuleTable002_ set to L21vZHVsZXMvbnVtbGliIiwiL3NjaWNvcmUvc29mdC9tb2R1bGVzL3BlcmYiLCIvc2NpY29yZS9zb2Z0L21vZHVsZXMvcGh5cyIsIi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9zeXN0ZW0iLCIvc2NpY29yZS9zb2Z0L21vZHVsZXMvdG9vbGNoYWluIiwiL3NjaWNvcmUvc29mdC9tb2R1bGVzL3Rvb2xzIiwiL3NjaWNvcmUvc29mdC9tb2R1bGVzL3ZpcyIsfSxbImNfcmVidWlsZFRpbWUiXT0xODY4LjE0MzMyOTYyMDQsWyJjX3Nob3J0VGltZSJdPTE1LjU2Nzg2MTA4MDE3LGZhbWlseT17fSxpbmFjdGl2ZT17fSxtVD17RWFzeUJ1aWxkPXtbIkZOIl09Ii9zY3JhdGNoL3JwYXRoLXRlc3QvbW9kdWxlcy9hbGwvRWFzeUJ1aWxkLzMuMC4xIixbImRlZmF1bHQiXT0xLFsiZnVsbE5hbWUi (previous value: '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')
== 2016-12-10 11:48:16,958 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2016-12-10 11:48:16,958 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:16,959 modules.py:400 INFO $MODULEPATH set via list of module paths (w/ 'module use'): /scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all
== 2016-12-10 11:48:17,563 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:17,564 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:17,569 filetools.py:967 INFO Creating directory /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/easybuild (parents: True, set_gid: False, sticky: False)
== 2016-12-10 11:48:17,808 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previously undefined)
== 2016-12-10 11:48:17,809 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2016-12-10 11:48:17,810 filetools.py:1072 INFO Path /scratch/eb-Cgfdsv/tmpCDvsR_ successfully removed.
== 2016-12-10 11:48:17,810 environment.py:97 INFO Environment variable CPPFLAGS set to -I/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include -I/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/include -I/scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include (previously undefined)
== 2016-12-10 11:48:17,811 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,811 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
== 2016-12-10 11:48:17,812 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2016-12-10 11:48:17,812 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,812 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2016-12-10 11:48:17,813 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,813 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,814 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to (previously undefined)
== 2016-12-10 11:48:17,814 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,815 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,815 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,816 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:17,816 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:17,816 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,817 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,817 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2016-12-10 11:48:17,818 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,818 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib/libmpi.so (previously undefined)
== 2016-12-10 11:48:17,819 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,819 environment.py:97 INFO Environment variable _ModuleTable015_ set to L3NvZnQvbW9kdWxlcy90b29sY2hhaW46L3NjaWNvcmUvc29mdC9tb2R1bGVzL3Rvb2xzOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy92aXMiLFsidmVyc2lvbiJdPTIsfQ== (previous value: 'L3BlcmY6L3NjaWNvcmUvc29mdC9tb2R1bGVzL3BoeXM6L3NjaWNvcmUvc29mdC9tb2R1bGVzL3N5c3RlbTovc2NpY29yZS9zb2Z0L21vZHVsZXMvdG9vbGNoYWluOi9zY2ljb3JlL3NvZnQvbW9kdWxlcy90b29sczovc2NpY29yZS9zb2Z0L21vZHVsZXMvdmlzIixbInZlcnNpb24iXT0yLH0=')
== 2016-12-10 11:48:17,820 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,820 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2016-12-10 11:48:17,820 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,821 environment.py:97 INFO Environment variable _ModuleTable013_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,821 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,822 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:17,822 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,823 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2016-12-10 11:48:17,823 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,824 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
== 2016-12-10 11:48:17,824 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2016-12-10 11:48:17,824 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,825 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:17,825 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,826 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,826 environment.py:97 INFO Environment variable _ModuleTable014_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,826 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2016-12-10 11:48:17,826 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,827 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined)
== 2016-12-10 11:48:17,827 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,827 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,828 environment.py:97 INFO Environment variable _ModuleTable002_ set to 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 (previous value: 'b3JlL3NvZnQvbW9kdWxlcy9tcGkiLCIvc2NpY29yZS9zb2Z0L21vZHVsZXMvbnVtbGliIiwiL3NjaWNvcmUvc29mdC9tb2R1bGVzL3BlcmYiLCIvc2NpY29yZS9zb2Z0L21vZHVsZXMvcGh5cyIsIi9zY2ljb3JlL3NvZnQvbW9kdWxlcy9zeXN0ZW0iLCIvc2NpY29yZS9zb2Z0L21vZHVsZXMvdG9vbGNoYWluIiwiL3NjaWNvcmUvc29mdC9tb2R1bGVzL3Rvb2xzIiwiL3NjaWNvcmUvc29mdC9tb2R1bGVzL3ZpcyIsfSxbImNfcmVidWlsZFRpbWUiXT0xODY4LjE0MzMyOTYyMDQsWyJjX3Nob3J0VGltZSJdPTE1LjU2Nzg2MTA4MDE3LGZhbWlseT17fSxpbmFjdGl2ZT17fSxtVD17RWFzeUJ1aWxkPXtbIkZOIl09Ii9zY3JhdGNoL3JwYXRoLXRlc3QvbW9kdWxlcy9hbGwvRWFzeUJ1')
== 2016-12-10 11:48:17,828 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,828 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,829 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:17,829 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:17,829 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib (previously undefined)
== 2016-12-10 11:48:17,830 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-12-10 11:48:17,830 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,830 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,830 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,831 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
== 2016-12-10 11:48:17,831 environment.py:97 INFO Environment variable _ModuleTable007_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,831 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,832 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:17,832 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
== 2016-12-10 11:48:17,832 environment.py:97 INFO Environment variable _ModuleTable008_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,833 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,833 environment.py:97 INFO Environment variable _ModuleTable001_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,833 environment.py:97 INFO Environment variable _ModuleTable009_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,833 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,834 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,834 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:17,834 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,835 environment.py:97 INFO Environment variable LMOD_DEFAULT_MODULEPATH set to /scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all:/scicore/soft/modules/base:/scicore/soft/modules/bio:/scicore/soft/modules/chem:/scicore/soft/modules/compiler:/scicore/soft/modules/data:/scicore/soft/modules/devel:/scicore/soft/modules/lang:/scicore/soft/modules/lib:/scicore/soft/modules/math:/scicore/soft/modules/mpi:/scicore/soft/modules/numlib:/scicore/soft/modules/perf:/scicore/soft/modules/phys:/scicore/soft/modules/system:/scicore/soft/modules/toolchain:/scicore/soft/modules/tools:/scicore/soft/modules/vis')
== 2016-12-10 11:48:17,835 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2016-12-10 11:48:17,835 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,836 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:17,836 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,836 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,836 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib (previously undefined)
== 2016-12-10 11:48:17,837 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:17,837 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,837 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,838 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
== 2016-12-10 11:48:17,838 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:17,838 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2016-12-10 11:48:17,839 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
== 2016-12-10 11:48:17,839 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib (previous value: '/scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20/lib:/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib:/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib:/scratch/rpath-test/apps/GMP/6.1.0-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tk/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/SQLite/3.9.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/Tcl/8.6.4-goolf-1.7.20/lib:/scratch/rpath-test/apps/ncurses/5.9-goolf-1.7.20/lib:/scratch/rpath-test/apps/libreadline/6.2-goolf-1.7.20/lib:/scratch/rpath-test/apps/bzip2/1.0.6-goolf-1.7.20/lib:/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib:/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib:/scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib:/scratch/rpath-test/apps/hwloc/1.10.1-GCC-4.8.4/lib:/scratch/rpath-test/apps/numactl/2.0.10-GCC-4.8.4/lib:/scratch/rpath-test/apps/GCC/4.8.4/lib/gcc/x86_64-unknown-linux-gnu/4.8.4:/scratch/rpath-test/apps/GCC/4.8.4/lib64:/scratch/rpath-test/apps/GCC/4.8.4/lib:/scratch/rpath-test/apps/binutils/2.25.1/lib')
== 2016-12-10 11:48:17,839 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2016-12-10 11:48:17,839 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:17,840 environment.py:97 INFO Environment variable _ModuleTable011_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,840 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,840 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,841 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-10 11:48:17,841 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/include -I/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include -I/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/include -I/scratch/rpath-test/apps/Eigen/3.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/include -I/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/include (previously undefined)
== 2016-12-10 11:48:17,841 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2016-12-10 11:48:17,842 environment.py:97 INFO Environment variable MODULEPATH set to /scratch/rpath-test/modules/all (previous value: '/scratch/eb-Cgfdsv/tmpCDvsR_/all:/scratch/rpath-test/modules/all')
== 2016-12-10 11:48:17,842 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/include (previously undefined)
== 2016-12-10 11:48:17,842 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,843 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,843 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,843 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,843 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
== 2016-12-10 11:48:17,844 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,844 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,844 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-12-10 11:48:17,845 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,845 environment.py:97 INFO Environment variable PRECFLAGS set to (previously undefined)
== 2016-12-10 11:48:17,845 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
== 2016-12-10 11:48:17,845 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:17,846 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:17,846 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,846 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,847 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2016-12-10 11:48:17,847 environment.py:97 INFO Environment variable _ModuleTable005_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,847 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2016-12-10 11:48:17,848 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-10 11:48:17,848 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2016-12-10 11:48:17,848 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/lib/libmpi.so (previously undefined)
== 2016-12-10 11:48:17,848 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,849 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,849 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-12-10 11:48:17,849 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,850 environment.py:97 INFO Environment variable _ModuleTable006_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,850 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,850 environment.py:97 INFO Environment variable MPI_INC_DIR set to /scratch/rpath-test/apps/OpenMPI/1.8.4-GCC-4.8.4/include (previously undefined)
== 2016-12-10 11:48:17,851 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,851 environment.py:97 INFO Environment variable _ModuleTable012_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,851 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,852 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-12-10 11:48:17,852 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-12-10 11:48:17,852 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2016-12-10 11:48:17,852 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:17,853 environment.py:97 INFO Environment variable _ModuleTable010_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,853 environment.py:97 INFO Environment variable _ModuleTable003_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,853 environment.py:97 INFO Environment variable LDFLAGS set to -L/scratch/rpath-test/apps/GCC/4.8.4/lib64 -L/scratch/rpath-test/apps/GCC/4.8.4/lib -L/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib -L/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib -L/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib -L/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:17,854 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib (previously undefined)
== 2016-12-10 11:48:17,854 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-12-10 11:48:17,854 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2016-12-10 11:48:17,855 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2016-12-10 11:48:17,855 environment.py:97 INFO Environment variable _ModuleTable004_ set to 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 (previous value: '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')
== 2016-12-10 11:48:17,855 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to (previously undefined)
== 2016-12-10 11:48:17,856 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,856 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,856 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/scratch/rpath-test/apps/GCC/4.8.4/lib64 -L/scratch/rpath-test/apps/GCC/4.8.4/lib -L/scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/ScaLAPACK/2.0.2-gompi-1.7.20-OpenBLAS-0.2.13-LAPACK-3.5.0/lib -L/scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/lib -L/scratch/rpath-test/apps/Python/2.7.11-goolf-1.7.20/lib -L/scratch/rpath-test/apps/zlib/1.2.8-goolf-1.7.20/lib -L/scratch/rpath-test/apps/Qt/4.8.6-goolf-1.7.20/lib (previously undefined)
== 2016-12-10 11:48:17,856 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /scratch/rpath-test/apps/OpenBLAS/0.2.13-GCC-4.8.4-LAPACK-3.5.0/include (previously undefined)
== 2016-12-10 11:48:17,857 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
== 2016-12-10 11:48:17,857 environment.py:97 INFO Environment variable FFT_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:17,857 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2016-12-10 11:48:17,858 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,858 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2016-12-10 11:48:17,858 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-12-10 11:48:17,859 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,859 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=x86-64 -mtune=generic (previously undefined)
== 2016-12-10 11:48:17,859 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /scratch/rpath-test/apps/FFTW/3.3.4-gompi-1.7.20/include (previously undefined)
== 2016-12-10 11:48:17,859 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-12-10 11:48:17,860 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2016-12-10 11:48:17,860 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-12-10 11:48:17,861 build_log.py:216 INFO permissions...
== 2016-12-10 11:48:17,861 easyblock.py:2271 INFO Starting permissions step
== 2016-12-10 11:48:17,862 easyblock.py:2274 INFO Running method permissions_step part of step permissions
== 2016-12-10 11:48:17,862 filetools.py:849 INFO Adjusting permissions recursively for /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
== 2016-12-10 11:48:17,878 easyblock.py:2191 INFO Successfully removed write permissions recursively for group/other on install dir.
== 2016-12-10 11:48:17,879 filetools.py:849 INFO Adjusting permissions recursively for /scratch/rpath-test/apps/MRtrix3/0.3.14-goolf-1.7.20
== 2016-12-10 11:48:17,894 easyblock.py:2207 INFO Successfully added read permissions '0444' recursively on install dir
== 2016-12-10 11:48:17,895 build_log.py:216 INFO packaging...
== 2016-12-10 11:48:17,895 easyblock.py:2271 INFO Starting package step
== 2016-12-10 11:48:17,895 easyblock.py:2274 INFO Running method package_step part of step package
== 2016-12-10 11:48:17,896 easyblock.py:1800 INFO Skipping package step (not enabled)
== 2016-12-10 11:48:17,896 easyblock.py:276 INFO Closing log for application name MRtrix3 version 0.3.14
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