bbpbuildbot/GitLab logs for bluebrain-coreneuron#780 Secret

## build-coreneuron-mod2c-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645789812:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645789812:resolve_secrets
[0Ksection_start:1645789812:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor102394253, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168563
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168563_PROD_P112_CP4_C6
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299526
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168563_PROD_P112_CP4_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299526 --cpus-per-task=8 --mem=76G
section_end:1645789849:prepare_executor
[0Ksection_start:1645789849:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n18 via bbpv1.epfl.ch...
section_end:1645789852:prepare_script
[0Ksection_start:1645789852:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645789853:get_sources
[0Ksection_start:1645789853:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:coreneuron:mod2c:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=236974 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645789855:restore_cache
[0Ksection_start:1645789855:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for spack_setup (168556)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=237115 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168556 responseStatus[0;m=200 OK token[0;m=MjMDCnhD
section_end:1645789856:download_artifacts
[0Ksection_start:1645789856:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168563/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168563/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168563/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168563/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168563/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron%intel +tests~legacy-unit build_type=Debug
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be m3wj6qrskw2me6loonsphskpme3zo3yx
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299526/ccache
  Primary config:   /nvme/bbpcihpcproj12/299526/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 12:51:26 2022
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.24 / 0.51 (46.02 %)
  Files:            4726
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'm3wj6qrskw2me6loonsphskpme3zo3yx'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron%intel~legacy-unit+tests build_type=Debug

Concretized
--------------------------------
 -   m3wj6qr  coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake
 -   dwdch6b      ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  dl7pfht      ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
 -   z3q5f3x      ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
 -   s4ueg72      ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake
[^]  3narjkw      ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  ldqdrnx      ^libsonata-report@1.0.0.20220218%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ofveh3j          ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  xys6npz              ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  e7w5nez              ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  wk3uenv          ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   6ggc5yr      ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  f27a7nn      ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  gdhqypa      ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp)
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-wk3uen
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.0.0.20220218-ldqdrn
==> Installing coreneuron-develop-m3wj6qrskw2me6loonsphskpme3zo3yx
==> No binary for coreneuron-develop-m3wj6qrskw2me6loonsphskpme3zo3yx found: installing from source
==> No patches needed for coreneuron
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
==> coreneuron: Successfully installed coreneuron-develop-m3wj6qrskw2me6loonsphskpme3zo3yx
  Fetch: 4.35s.  Build: 42.72s.  Total: 47.07s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_intel-2021.4.0-skylake/coreneuron-develop-m3wj6q
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:             /nvme/bbpcihpcproj12/299526/ccache
  Primary config:              /nvme/bbpcihpcproj12/299526/ccache/ccache.conf
  Secondary config:            /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:               Fri Feb 25 12:53:03 2022
  Hits:                         108 /  115 (93.91 %)
    Direct:                      90 /  116 (77.59 %)
    Preprocessed:                18 /   26 (69.23 %)
  Misses:                         7
    Direct:                      26
    Preprocessed:                 8
  Uncacheable:                   18
Primary storage:
  Hits:                         198 /  232 (85.34 %)
  Misses:                        34
  Cache size (GB):             0.24 / 0.51 (46.21 %)
  Files:                       4740
Uncacheable:
  Called for linking:            14
  Compiler produced no output:    1
  No input file:                  3
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645789984:step_script
[0Ksection_start:1645789985:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:coreneuron:mod2c:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=241449 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Aintel-8[0;m
[32;1mCreated cache[0;m
section_end:1645789996:archive_cache
[0Ksection_start:1645789996:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=241819 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168563 responseStatus[0;m=201 Created token[0;m=d_UusMB3
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=241859 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168563 responseStatus[0;m=201 Created token[0;m=d_UusMB3
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=241903 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168563 responseStatus[0;m=201 Created token[0;m=d_UusMB3
section_end:1645789998:upload_artifacts_on_success
[0Ksection_start:1645789998:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645789999:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-coreneuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790283:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790283:resolve_secrets
[0Ksection_start:1645790283:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor805913267, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168564
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168564_PROD_P112_CP5_C7
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299545
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168564_PROD_P112_CP5_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299545 --cpus-per-task=8 --mem=76G
section_end:1645790301:prepare_executor
[0Ksection_start:1645790301:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n17 via bbpv1.epfl.ch...
section_end:1645790305:prepare_script
[0Ksection_start:1645790305:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790306:get_sources
[0Ksection_start:1645790306:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:coreneuron:nmodl:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=185858 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645790309:restore_cache
[0Ksection_start:1645790309:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:nmodl (168558)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=186148 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168558 responseStatus[0;m=200 OK token[0;m=wqmd_3zs
section_end:1645790310:download_artifacts
[0Ksection_start:1645790310:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168564/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168564/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168564/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168564/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168564/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron%intel +nmodl+tests~legacy-unit build_type=Debug ^hpe-mpi%gcc ^/cnhmkfzsucqnmy6dfxyfikno2yj57grf
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be hjoctunjmyugp3uctz2hvc3l7iujnh2j
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299545/ccache
  Primary config:   /nvme/bbpcihpcproj12/299545/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 12:58:54 2022
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.26 / 0.51 (51.45 %)
  Files:            5868
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'hjoctunjmyugp3uctz2hvc3l7iujnh2j'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron%intel~legacy-unit+nmodl+tests build_type=Debug
 -       ^hpe-mpi%gcc
[+]      ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]          ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   hjoctun  coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake
 -   dwdch6b      ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  dl7pfht      ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  2qmvlfy      ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
 -   s4ueg72      ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake
[^]  hyunzkn      ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  btmx4zs      ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  utj47fz          ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ihxi5rl              ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  evtnqzd              ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  x72vveu          ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   6ggc5yr      ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake
[+]  cnhmkfz      ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  onq3mhg          ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]  4ectow5              ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  72xzp3v                  ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  22arfs4          ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ascbeii              ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  kvw3vhm              ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  7iyiygo              ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  c7qvw2q                  ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  mazoiox              ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  y7rfzdj              ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  v4z3s5e              ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  w4gddqx              ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ci5oe5b          ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]  xj2wlac              ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  xtett6q          ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  dzb2mfs              ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  5fkun4i      ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp)
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.0.0.20220218-btmx4z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf
==> Installing coreneuron-develop-hjoctunjmyugp3uctz2hvc3l7iujnh2j
==> No binary for coreneuron-develop-hjoctunjmyugp3uctz2hvc3l7iujnh2j found: installing from source
==> No patches needed for coreneuron
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
==> coreneuron: Successfully installed coreneuron-develop-hjoctunjmyugp3uctz2hvc3l7iujnh2j
  Fetch: 8.42s.  Build: 6m 5.69s.  Total: 6m 14.10s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_intel-2021.4.0-skylake/coreneuron-develop-hjoctu
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:             /nvme/bbpcihpcproj12/299545/ccache
  Primary config:              /nvme/bbpcihpcproj12/299545/ccache/ccache.conf
  Secondary config:            /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:               Fri Feb 25 13:06:38 2022
  Hits:                          87 /   94 (92.55 %)
    Direct:                      78 /   95 (82.11 %)
    Preprocessed:                 9 /   17 (52.94 %)
  Misses:                         7
    Direct:                      17
    Preprocessed:                 8
  Uncacheable:                   16
Primary storage:
  Hits:                         165 /  190 (86.84 %)
  Misses:                        25
  Cache size (GB):             0.26 / 0.51 (51.65 %)
  Files:                       5890
Uncacheable:
  Called for linking:            12
  Compiler produced no output:    1
  No input file:                  3
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645790805:step_script
[0Ksection_start:1645790805:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:coreneuron:nmodl:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=196779 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Aintel-8[0;m
[32;1mCreated cache[0;m
section_end:1645790816:archive_cache
[0Ksection_start:1645790816:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=197065 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168564 responseStatus[0;m=201 Created token[0;m=kDERLrn4
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=197119 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168564 responseStatus[0;m=201 Created token[0;m=kDERLrn4
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=197179 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168564 responseStatus[0;m=201 Created token[0;m=kDERLrn4
section_end:1645790818:upload_artifacts_on_success
[0Ksection_start:1645790818:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645790819:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-coreneuron-nmodl-nvhpc-acc.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790282:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790282:resolve_secrets
[0Ksection_start:1645790282:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor236134681, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168562
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168562_PROD_P112_CP4_C6
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299546
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168562_PROD_P112_CP4_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299546 --cpus-per-task=8 --mem=76G
section_end:1645790301:prepare_executor
[0Ksection_start:1645790301:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n17 via bbpv1.epfl.ch...
section_end:1645790305:prepare_script
[0Ksection_start:1645790305:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790306:get_sources
[0Ksection_start:1645790306:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:coreneuron:nmodl:nvhpc:acc-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=185849 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645790308:restore_cache
[0Ksection_start:1645790308:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:nmodl (168558)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=186061 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168558 responseStatus[0;m=200 OK token[0;m=wqmd_3zs
section_end:1645790309:download_artifacts
[0Ksection_start:1645790309:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168562/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168562/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168562/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168562/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168562/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron%nvhpc +nmodl~openmp+gpu+tests~legacy-unit+sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/cnhmkfzsucqnmy6dfxyfikno2yj57grf
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be dnxbrduez2m4zqbybmy5gptv7esox5ao
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299546/ccache
  Primary config:   /nvme/bbpcihpcproj12/299546/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 12:58:54 2022
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.17 / 0.51 (33.66 %)
  Files:            6387
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'dnxbrduez2m4zqbybmy5gptv7esox5ao'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron%nvhpc+gpu~legacy-unit+nmodl~openmp+sympy+tests build_type=RelWithDebInfo
 -       ^hpe-mpi%gcc
[+]      ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]          ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   dnxbrdu  coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   ocv5kkj      ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  bfwiaoz      ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  2qmvlfy      ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
[^]  m65zs3l      ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
 -   xzdnug7      ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake
[^]  hyunzkn      ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  btmx4zs      ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  utj47fz          ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ihxi5rl              ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  evtnqzd              ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  x72vveu          ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   ij6isvr      ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake
[+]  cnhmkfz      ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  onq3mhg          ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]  4ectow5              ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  72xzp3v                  ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  22arfs4          ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ascbeii              ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  kvw3vhm              ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  7iyiygo              ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  c7qvw2q                  ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  mazoiox              ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  y7rfzdj              ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  v4z3s5e              ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  w4gddqx              ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ci5oe5b          ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]  xj2wlac              ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  xtett6q          ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  dzb2mfs              ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  5fkun4i      ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd)
==> cuda@11.6.0 : has external module in ['cuda/11.6.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-nvk6oo (external cuda-11.6.0-m65zs3ly5k4rtg4jxha5fnoceldudsus)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb)
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.0.0.20220218-btmx4z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf
==> Installing coreneuron-develop-dnxbrduez2m4zqbybmy5gptv7esox5ao
==> No binary for coreneuron-develop-dnxbrduez2m4zqbybmy5gptv7esox5ao found: installing from source
==> No patches needed for coreneuron
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
==> coreneuron: Successfully installed coreneuron-develop-dnxbrduez2m4zqbybmy5gptv7esox5ao
  Fetch: 7.49s.  Build: 16m 8.21s.  Total: 16m 15.71s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/coreneuron-develop-dnxbrd
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:    /nvme/bbpcihpcproj12/299546/ccache
  Primary config:     /nvme/bbpcihpcproj12/299546/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:      Fri Feb 25 13:16:36 2022
  Hits:                  0 /   96 (0.00 %)
    Direct:              0 /   96 (0.00 %)
    Preprocessed:        0 /   96 (0.00 %)
  Misses:               96
    Direct:             96
    Preprocessed:       96
  Uncacheable:          16
Primary storage:
  Hits:                  0 /  192 (0.00 %)
  Misses:              192
  Cache size (GB):    0.18 / 0.51 (35.47 %)
  Files:              6576
Uncacheable:
  Called for linking:   13
  No input file:         3
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645791399:step_script
[0Ksection_start:1645791399:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:coreneuron:nmodl:nvhpc:acc-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=210590 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aacc-8[0;m
[32;1mCreated cache[0;m
section_end:1645791409:archive_cache
[0Ksection_start:1645791409:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=210719 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168562 responseStatus[0;m=201 Created token[0;m=M65dgeFY
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=210759 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168562 responseStatus[0;m=201 Created token[0;m=M65dgeFY
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=210801 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168562 responseStatus[0;m=201 Created token[0;m=M65dgeFY
section_end:1645791410:upload_artifacts_on_success
[0Ksection_start:1645791410:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645791411:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-coreneuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790282:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790282:resolve_secrets
[0Ksection_start:1645790282:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor820646927, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168561
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168561_PROD_P112_CP0_C0
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299547
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168561_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299547 --cpus-per-task=8 --mem=76G
section_end:1645790301:prepare_executor
[0Ksection_start:1645790301:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i6n19 via bbpv1.epfl.ch...
section_end:1645790304:prepare_script
[0Ksection_start:1645790304:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790304:get_sources
[0Ksection_start:1645790304:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:coreneuron:nmodl:nvhpc:omp-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=155646 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645790307:restore_cache
[0Ksection_start:1645790307:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:nmodl (168558)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=155711 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168558 responseStatus[0;m=200 OK token[0;m=wqmd_3zs
section_end:1645790308:download_artifacts
[0Ksection_start:1645790308:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168561/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168561/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168561/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168561/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168561/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install coreneuron%nvhpc +nmodl+openmp+gpu+tests~legacy-unit~sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/cnhmkfzsucqnmy6dfxyfikno2yj57grf
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be 4aqrvmukyzi2vgvnx2ytrojgreyutnpx
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299547/ccache
  Primary config:   /nvme/bbpcihpcproj12/299547/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 12:58:54 2022
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.18 / 0.51 (35.78 %)
  Files:            6871
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: '4aqrvmukyzi2vgvnx2ytrojgreyutnpx'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   coreneuron%nvhpc+gpu~legacy-unit+nmodl+openmp~sympy+tests build_type=RelWithDebInfo
 -       ^hpe-mpi%gcc
[+]      ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]          ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   4aqrvmu  coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   ocv5kkj      ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  bfwiaoz      ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  2qmvlfy      ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
[^]  m65zs3l      ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
 -   xzdnug7      ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake
[^]  hyunzkn      ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  btmx4zs      ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  utj47fz          ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ihxi5rl              ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  evtnqzd              ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  x72vveu          ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   ij6isvr      ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake
[+]  cnhmkfz      ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  onq3mhg          ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]  4ectow5              ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  72xzp3v                  ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  22arfs4          ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ascbeii              ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  kvw3vhm              ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  7iyiygo              ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  c7qvw2q                  ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  mazoiox              ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  y7rfzdj              ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  v4z3s5e              ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  w4gddqx              ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ci5oe5b          ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]  xj2wlac              ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  xtett6q          ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  dzb2mfs              ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  5fkun4i      ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd)
==> cuda@11.6.0 : has external module in ['cuda/11.6.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-nvk6oo (external cuda-11.6.0-m65zs3ly5k4rtg4jxha5fnoceldudsus)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb)
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.0.0.20220218-btmx4z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf
==> Installing coreneuron-develop-4aqrvmukyzi2vgvnx2ytrojgreyutnpx
==> No binary for coreneuron-develop-4aqrvmukyzi2vgvnx2ytrojgreyutnpx found: installing from source
==> No patches needed for coreneuron
==> coreneuron: Executing phase: 'cmake'
==> coreneuron: Executing phase: 'build'
==> coreneuron: Executing phase: 'install'
==> coreneuron: Successfully installed coreneuron-develop-4aqrvmukyzi2vgvnx2ytrojgreyutnpx
  Fetch: 4.86s.  Build: 5m 15.30s.  Total: 5m 20.16s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/coreneuron-develop-4aqrvm
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:    /nvme/bbpcihpcproj12/299547/ccache
  Primary config:     /nvme/bbpcihpcproj12/299547/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:      Fri Feb 25 13:05:02 2022
  Hits:                  0 /   97 (0.00 %)
    Direct:              0 /   97 (0.00 %)
    Preprocessed:        0 /   97 (0.00 %)
  Misses:               97
    Direct:             97
    Preprocessed:       97
  Uncacheable:          17
Primary storage:
  Hits:                  0 /  194 (0.00 %)
  Misses:              194
  Cache size (GB):    0.19 / 0.51 (37.62 %)
  Files:              7064
Uncacheable:
  Called for linking:   14
  No input file:         3
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645790703:step_script
[0Ksection_start:1645790703:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:coreneuron:nmodl:nvhpc:omp-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=161833 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aomp-8[0;m
[32;1mCreated cache[0;m
section_end:1645790712:archive_cache
[0Ksection_start:1645790712:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=161908 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168561 responseStatus[0;m=201 Created token[0;m=TaVk_LDt
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=161948 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168561 responseStatus[0;m=201 Created token[0;m=TaVk_LDt
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=161990 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168561 responseStatus[0;m=201 Created token[0;m=TaVk_LDt
section_end:1645790713:upload_artifacts_on_success
[0Ksection_start:1645790713:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645790714:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-mod2c-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790003:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790003:resolve_secrets
[0Ksection_start:1645790003:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor102526900, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168568
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168568_PROD_P112_CP1_C3
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
chown: changing ownership of â/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210/J168559/spack-build/spack-stage-coreneuron-develop-eu4hpbxhafq7qnk2fui2odphdvhionsa/spack-build-eu4hpbx/nrn_checkpoint.tsmâ: No such file or directory
[31;1mERROR: Preparation failed: exit status 2[0;m
[32;1mWill be retried in 3s ...[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor772093338, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168568
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168568_PROD_P112_CP1_C3
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299532
job state: PD
job state: PD
job state: PD
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job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168568_PROD_P112_CP1_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299532 --cpus-per-task=8 --mem=76G
section_end:1645790159:prepare_executor
[0Ksection_start:1645790159:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n17 via bbpv1.epfl.ch...
section_end:1645790161:prepare_script
[0Ksection_start:1645790161:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790162:get_sources
[0Ksection_start:1645790162:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:neuron:mod2c:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=180891 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645790168:restore_cache
[0Ksection_start:1645790168:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:mod2c:intel (168563)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=180984 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168563 responseStatus[0;m=200 OK token[0;m=d_UusMB3
section_end:1645790169:download_artifacts
[0Ksection_start:1645790169:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168568/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168568/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168568/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168568/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168568/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/m3wj6qrskw2me6loonsphskpme3zo3yx
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be wkvisp3jgnehn5fqqvlfj6yzldz6c3sg
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299532/ccache
  Primary config:   /nvme/bbpcihpcproj12/299532/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 12:56:34 2022
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (89.28 %)
  Files:            29308
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'wkvisp3jgnehn5fqqvlfj6yzldz6c3sg'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake
[^]          ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]          ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake
[^]          ^libsonata-report@1.0.0.20220218%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]                  ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]                  ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]              ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]          ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   wkvisp3  neuron@develop%intel@2021.4.0+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake
 -   dwdch6b      ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake
 -   z3q5f3x      ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
[+]  m3wj6qr      ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake
[^]  dl7pfht          ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  3narjkw          ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  ldqdrnx          ^libsonata-report@1.0.0.20220218%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ofveh3j              ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  xys6npz                  ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  e7w5nez                  ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  wk3uenv              ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  f27a7nn          ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  gdhqypa          ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   s4ueg72      ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake
[^]  bjxwlfq      ^gettext@0.21%intel@2021.4.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake
[^]  dvyfbbf          ^bzip2@1.0.8%intel@2021.4.0~debug~pic+shared arch=linux-rhel7-skylake
[^]  ka2cfu4          ^libiconv@1.16%intel@2021.4.0 libs=shared,static arch=linux-rhel7-skylake
[^]  w3ob7m2          ^libxml2@2.9.12%intel@2021.4.0~python arch=linux-rhel7-skylake
[^]  ahg6hq4              ^xz@5.2.5%intel@2021.4.0~pic libs=shared,static arch=linux-rhel7-skylake
[^]  q3rwuez          ^ncurses@6.2%intel@2021.4.0~symlinks+termlib abi=none arch=linux-rhel7-skylake
[^]  2fli66n          ^tar@1.28%intel@2021.4.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake
 -   6ggc5yr      ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  qj3vvxk      ^py-mpi4py@3.1.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  5flpilw          ^py-setuptools@57.4.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  ipsbwzp      ^py-numpy@1.19.5%intel@2021.4.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake
[^]  rl5ojfn          ^intel-mkl@2020.4.304%intel@2021.4.0~ilp64+shared threads=none arch=linux-rhel7-skylake
[^]  taxuisw          ^py-cython@0.29.24%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  tzmlo5v      ^py-pytest@6.2.4%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  d5szgli          ^py-attrs@21.2.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  huky5p4          ^py-iniconfig@1.1.1%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  wli7caj          ^py-packaging@21.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  3a3ralt              ^py-pyparsing@2.4.7%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  rh6zvev          ^py-pluggy@0.13.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  kpwupa3              ^py-setuptools-scm@6.3.2%intel@2021.4.0+toml arch=linux-rhel7-skylake
[^]  apu667d                  ^py-tomli@1.2.1%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  jesa65u                      ^py-pip@21.1.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  skrpmyr          ^py-py@1.9.0%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  ktthpzx          ^py-toml@0.10.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  tzl5sq5      ^py-pytest-cov@2.8.1%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  zkd7o6d          ^py-coverage@5.5%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  5abs2t7      ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-wk3uen
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-dvyfbbfdan33i7wyydyeskb3legztopm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libiconv-1.16-ka2cfu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/xz-5.2.5-ahg6hq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-q3rwuezhc2j56kexunypjpejzketozmc)
[+] /usr (external tar-1.28-2fli66nkkv35g34exwd2xifp5w3gtgo6)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-rl5ojfngtc7sffwyz7v6ek6eceq53wed)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-57.4.0-5flpil
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libxml2-2.9.12-w3ob7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.0.0.20220218-ldqdrn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-attrs-21.2.0-d5szgl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-toml-0.10.2-ktthpz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-coverage-5.5-zkd7o6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pip-21.1.2-jesa65
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pyparsing-2.4.7-3a3ral
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-cython-0.29.24-taxuis
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-iniconfig-1.1.1-huky5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-mpi4py-3.1.2-qj3vvx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/gettext-0.21-bjxwlf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_intel-2021.4.0-skylake/coreneuron-develop-m3wj6q
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-tomli-1.2.1-apu667
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-packaging-21.0-wli7ca
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-numpy-1.19.5-ipsbwz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-scm-6.3.2-kpwupa
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pluggy-0.13.0-rh6zve
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-py-1.9.0-skrpmy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-6.2.4-tzmlo5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-cov-2.8.1-tzl5sq
==> Installing neuron-develop-wkvisp3jgnehn5fqqvlfj6yzldz6c3sg
==> No binary for neuron-develop-wkvisp3jgnehn5fqqvlfj6yzldz6c3sg found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-wkvisp3jgnehn5fqqvlfj6yzldz6c3sg
  Fetch: 13.13s.  Build: 14m 50.83s.  Total: 15m 3.96s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_intel-2021.4.0-skylake/neuron-develop-wkvisp
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/299532/ccache
  Primary config:           /nvme/bbpcihpcproj12/299532/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:            Fri Feb 25 13:12:32 2022
  Hits:                       719 /  818 (87.90 %)
    Direct:                   342 /  827 (41.35 %)
    Preprocessed:             377 /  479 (78.71 %)
  Misses:                      99
    Direct:                   485
    Preprocessed:             102
  Uncacheable:                132
Primary storage:
  Hits:                      1364 / 1648 (82.77 %)
  Misses:                     284
  Cache size (GB):           0.46 / 0.51 (89.53 %)
  Files:                    29501
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         109
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645791155:step_script
[0Ksection_start:1645791155:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:neuron:mod2c:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=207780 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Aintel-8[0;m
[32;1mCreated cache[0;m
section_end:1645791173:archive_cache
[0Ksection_start:1645791173:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=207976 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168568 responseStatus[0;m=201 Created token[0;m=jxy9318U
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=208019 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168568 responseStatus[0;m=201 Created token[0;m=jxy9318U
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=208069 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168568 responseStatus[0;m=201 Created token[0;m=jxy9318U
section_end:1645791175:upload_artifacts_on_success
[0Ksection_start:1645791175:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645791175:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-mod2c-nvhpc-acc.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790141:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790141:resolve_secrets
[0Ksection_start:1645790141:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor705348079, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168565
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168565_PROD_P112_CP2_C1
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299533
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168565_PROD_P112_CP2_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299533 --cpus-per-task=8 --mem=76G
section_end:1645790159:prepare_executor
[0Ksection_start:1645790159:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n17 via bbpv1.epfl.ch...
section_end:1645790161:prepare_script
[0Ksection_start:1645790161:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790162:get_sources
[0Ksection_start:1645790162:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:neuron:mod2c:nvhpc:acc-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=180845 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645790168:restore_cache
[0Ksection_start:1645790168:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (168559)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=181042 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168559 responseStatus[0;m=200 OK token[0;m=ZsSdMeXU
section_end:1645790169:download_artifacts
[0Ksection_start:1645790169:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168565/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168565/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168565/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168565/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168565/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/eu4hpbxhafq7qnk2fui2odphdvhionsa
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be jceyoibqlistjtoxixfncsic2t7pmdsp
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299533/ccache
  Primary config:   /nvme/bbpcihpcproj12/299533/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 12:56:34 2022
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (90.06 %)
  Files:            36287
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'jceyoibqlistjtoxixfncsic2t7pmdsp'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]          ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
[^]          ^hpe-mpi@2.25.hmpt%nvhpc@22.2 arch=linux-rhel7-skylake
[^]          ^libsonata-report@1.0.0.20220218%nvhpc@22.2~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^hdf5@1.10.7%nvhpc@22.2+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]                  ^pkgconf@1.8.0%nvhpc@22.2 arch=linux-rhel7-skylake
[^]                  ^zlib@1.2.11%nvhpc@22.2+optimize+pic+shared arch=linux-rhel7-skylake
[^]              ^spdlog@1.9.2%nvhpc@22.2~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^python@3.9.7%nvhpc@22.2+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]          ^reportinglib@2.5.6%nvhpc@22.2~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   jceyoib  neuron@develop%nvhpc@22.2+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake
 -   ocv5kkj      ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake
 -   55wtnz6      ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
[+]  eu4hpbx      ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  bfwiaoz          ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  m65zs3l          ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
[^]  yjmlhh2          ^hpe-mpi@2.25.hmpt%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  joukrdy          ^libsonata-report@1.0.0.20220218%nvhpc@22.2~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ytku65t              ^hdf5@1.10.7%nvhpc@22.2+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kzqllej                  ^pkgconf@1.8.0%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  tayew4i                  ^zlib@1.2.11%nvhpc@22.2+optimize+pic+shared arch=linux-rhel7-skylake
[^]  6bohspr              ^spdlog@1.9.2%nvhpc@22.2~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  anlnosv          ^python@3.9.7%nvhpc@22.2+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  4mciih7          ^reportinglib@2.5.6%nvhpc@22.2~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   xzdnug7      ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake
[^]  sr4zfin      ^gettext@0.21%nvhpc@22.2+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-skylake
[^]  ajb4w4f          ^bzip2@1.0.8%nvhpc@22.2~debug~pic+shared arch=linux-rhel7-skylake
[^]  4twyk6r          ^libiconv@1.16%nvhpc@22.2 libs=shared,static arch=linux-rhel7-skylake
[^]  fpazbku          ^libxml2@2.9.12%nvhpc@22.2~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-skylake
[^]  qzjkqgu              ^xz@5.2.5%nvhpc@22.2~pic libs=shared,static arch=linux-rhel7-skylake
[^]  w5fylgg          ^ncurses@6.2%nvhpc@22.2~symlinks+termlib abi=none arch=linux-rhel7-skylake
[^]  rbb3dop          ^tar@1.28%nvhpc@22.2 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake
 -   ij6isvr      ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  lpmwkvu      ^py-mpi4py@3.1.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  pa37ni6          ^py-setuptools@57.4.0%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  nlsjsjj      ^py-numpy@1.17.5%gcc@11.2.0+blas+lapack patches=cf407c1024b0878c4222dd352aa9dece412073bb15b138243a2893725434c7b6 arch=linux-rhel7-skylake
[^]  r5cvgru          ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake
[^]  gabxpj6      ^py-pytest@6.2.4%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  sqvzpxf          ^py-attrs@21.2.0%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  lzjp5na          ^py-iniconfig@1.1.1%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  qg4saj7          ^py-packaging@21.0%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  dqjk4r6              ^py-pyparsing@2.4.7%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  e75mnog          ^py-pluggy@0.13.0%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  rotu6n4              ^py-setuptools-scm@6.3.2%nvhpc@22.2+toml arch=linux-rhel7-skylake
[^]  uf52c5s                  ^py-tomli@1.2.1%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  mj6gtgm                      ^py-pip@21.1.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  f3hqsi6          ^py-py@1.9.0%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  fto3mxh          ^py-toml@0.10.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  aoyvjwm      ^py-pytest-cov@2.8.1%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  yyszraq          ^py-coverage@5.5%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  vwedalx      ^readline@8.1%nvhpc@22.2 arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj)
==> cuda@11.6.0 : has external module in ['cuda/11.6.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-nvk6oo (external cuda-11.6.0-m65zs3ly5k4rtg4jxha5fnoceldudsus)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-yjmlhh2qrwgth4mrrn3f72mynalveqr5)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/pkgconf-1.8.0-kzqlle
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-tayew4indju53v3ylyin7shvfpp5genf)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/spdlog-1.9.2-6bohsp
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-anlnosvxv5pmzlxnwx77gmjmmlsmov7b)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-ajb4w4fal7ri67giif6kgx5ks4ammoe3)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libiconv-1.16-4twyk6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/xz-5.2.5-qzjkqg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-w5fylggejc6gf75pltr5gsjdjsthzt3w)
[+] /usr (external tar-1.28-rbb3dopg6uj5eje6nc6qjoywga4vn23d)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-vwedalxfrcxjaatlnup77gynyx6weav5)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/reportinglib-2.5.6-4mciih
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/hdf5-1.10.7-ytku65
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-setuptools-57.4.0-pa37ni
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libxml2-2.9.12-fpazbk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/libsonata-report-1.0.0.20220218-joukrd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.17.5-nlsjsj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-iniconfig-1.1.1-lzjp5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-toml-0.10.2-fto3mx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pip-21.1.2-mj6gtg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pyparsing-2.4.7-dqjk4r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-attrs-21.2.0-sqvzpx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-coverage-5.5-yyszra
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-mpi4py-3.1.2-lpmwkv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/gettext-0.21-sr4zfi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/coreneuron-develop-eu4hpb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-tomli-1.2.1-uf52c5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-packaging-21.0-qg4saj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-setuptools-scm-6.3.2-rotu6n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pluggy-0.13.0-e75mno
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-py-1.9.0-f3hqsi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pytest-6.2.4-gabxpj
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.2-skylake/py-pytest-cov-2.8.1-aoyvjw
==> Installing neuron-develop-jceyoibqlistjtoxixfncsic2t7pmdsp
==> No binary for neuron-develop-jceyoibqlistjtoxixfncsic2t7pmdsp found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-jceyoibqlistjtoxixfncsic2t7pmdsp
  Fetch: 27.64s.  Build: 26m 51.80s.  Total: 27m 19.44s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/neuron-develop-jceyoi
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/299533/ccache
  Primary config:           /nvme/bbpcihpcproj12/299533/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:            Fri Feb 25 13:24:48 2022
  Hits:                        22 /  817 (2.69 %)
    Direct:                     9 /  826 (1.09 %)
    Preprocessed:              13 /  811 (1.60 %)
  Misses:                     795
    Direct:                   817
    Preprocessed:             798
  Uncacheable:                123
Primary storage:
  Hits:                        59 / 1646 (3.58 %)
  Misses:                    1587
  Cache size (GB):           0.46 / 0.51 (89.57 %)
  Files:                    35556
  Cleanups:                     4
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         100
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645791892:step_script
[0Ksection_start:1645791892:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:neuron:mod2c:nvhpc:acc-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=232472 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Anvhpc%3Aacc-8[0;m
[32;1mCreated cache[0;m
section_end:1645791910:archive_cache
[0Ksection_start:1645791910:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=232629 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168565 responseStatus[0;m=201 Created token[0;m=Pg_dFSN1
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=232666 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168565 responseStatus[0;m=201 Created token[0;m=Pg_dFSN1
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=232710 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168565 responseStatus[0;m=201 Created token[0;m=Pg_dFSN1
section_end:1645791911:upload_artifacts_on_success
[0Ksection_start:1645791911:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645791912:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790822:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790822:resolve_secrets
[0Ksection_start:1645790822:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor282560882, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168569
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168569_PROD_P112_CP5_C7
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299606
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168569_PROD_P112_CP5_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299606 --cpus-per-task=8 --mem=76G
section_end:1645790841:prepare_executor
[0Ksection_start:1645790841:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n18 via bbpv1.epfl.ch...
section_end:1645790844:prepare_script
[0Ksection_start:1645790844:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790845:get_sources
[0Ksection_start:1645790845:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:neuron:nmodl:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=266698 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Aintel-8[0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645790853:restore_cache
[0Ksection_start:1645790853:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:nmodl:intel (168564)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=267272 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168564 responseStatus[0;m=200 OK token[0;m=kDERLrn4
section_end:1645790854:download_artifacts
[0Ksection_start:1645790854:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168569/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168569/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168569/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168569/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168569/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/hjoctunjmyugp3uctz2hvc3l7iujnh2j
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be d237vgeszv2v4juufrm334lj43zgtubf
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299606/ccache
  Primary config:   /nvme/bbpcihpcproj12/299606/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 13:07:56 2022
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (92.06 %)
  Files:            27242
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'd237vgeszv2v4juufrm334lj43zgtubf'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake
[^]          ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]          ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]                  ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]              ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]                  ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                      ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]              ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                      ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]                  ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   d237vge  neuron@develop%intel@2021.4.0+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake
 -   dwdch6b      ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake
 -   z3q5f3x      ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
[+]  hjoctun      ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake
[^]  dl7pfht          ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  hyunzkn          ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  btmx4zs          ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  utj47fz              ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ihxi5rl                  ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  evtnqzd                  ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  x72vveu              ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  cnhmkfz          ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  onq3mhg              ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]  4ectow5                  ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  72xzp3v                      ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  22arfs4              ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ascbeii                  ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  kvw3vhm                  ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  7iyiygo                  ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  c7qvw2q                      ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  mazoiox                  ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  y7rfzdj                  ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  v4z3s5e                  ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  w4gddqx                  ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ci5oe5b              ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]  xj2wlac                  ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  xtett6q              ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  dzb2mfs                  ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  5fkun4i          ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   s4ueg72      ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake
[^]  iu2b5hx      ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake
[^]  3rmq3zx          ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake
[^]  hxxlexb          ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake
[^]  dnxqn2k          ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake
[^]  jzpqn5y              ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake
[^]  ams67cx          ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake
[^]  ir7xtbl          ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake
 -   6ggc5yr      ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake
[^]  n6q4vfz      ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  gjm7kkq      ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake
[^]  r5cvgru          ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake
[^]  h2fsi6i          ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  q5n7ofc      ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  fudvy5v          ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  5abs2t7      ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw)
[+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.0.0.20220218-btmx4z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_intel-2021.4.0-skylake/coreneuron-develop-hjoctu
==> Installing neuron-develop-d237vgeszv2v4juufrm334lj43zgtubf
==> No binary for neuron-develop-d237vgeszv2v4juufrm334lj43zgtubf found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-d237vgeszv2v4juufrm334lj43zgtubf
  Fetch: 23.56s.  Build: 27m 15.40s.  Total: 27m 38.96s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_intel-2021.4.0-skylake/neuron-develop-d237vg
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/299606/ccache
  Primary config:           /nvme/bbpcihpcproj12/299606/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:            Fri Feb 25 13:36:26 2022
  Hits:                       703 /  802 (87.66 %)
    Direct:                   168 /  811 (20.72 %)
    Preprocessed:             535 /  637 (83.99 %)
  Misses:                      99
    Direct:                   643
    Preprocessed:             102
  Uncacheable:                128
Primary storage:
  Hits:                      1173 / 1616 (72.59 %)
  Misses:                     443
  Cache size (GB):           0.47 / 0.51 (92.68 %)
  Files:                    27587
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         105
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645792587:step_script
[0Ksection_start:1645792587:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:neuron:nmodl:intel-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=5700 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Aintel-8[0;m
[32;1mCreated cache[0;m
section_end:1645792607:archive_cache
[0Ksection_start:1645792607:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=6437 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168569 responseStatus[0;m=201 Created token[0;m=BQV36ESS
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=6477 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168569 responseStatus[0;m=201 Created token[0;m=BQV36ESS
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=6519 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168569 responseStatus[0;m=201 Created token[0;m=BQV36ESS
section_end:1645792610:upload_artifacts_on_success
[0Ksection_start:1645792610:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645792610:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645791413:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645791413:resolve_secrets
[0Ksection_start:1645791413:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor637312072, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168567
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168567_PROD_P112_CP3_C6
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299710
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168567_PROD_P112_CP3_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299710 --cpus-per-task=8 --mem=76G
section_end:1645791443:prepare_executor
[0Ksection_start:1645791443:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n17 via bbpv1.epfl.ch...
section_end:1645791445:prepare_script
[0Ksection_start:1645791445:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645791446:get_sources
[0Ksection_start:1645791446:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=211454 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645791452:restore_cache
[0Ksection_start:1645791452:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (168562)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=211573 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168562 responseStatus[0;m=200 OK token[0;m=M65dgeFY
section_end:1645791453:download_artifacts
[0Ksection_start:1645791453:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168567/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168567/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168567/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168567/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168567/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/dnxbrduez2m4zqbybmy5gptv7esox5ao
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be zgvwkirjk6lnt2lvs6vnp23qndkxkjuf
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299710/ccache
  Primary config:   /nvme/bbpcihpcproj12/299710/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 13:18:14 2022
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.45 / 0.51 (88.33 %)
  Files:            29113
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'zgvwkirjk6lnt2lvs6vnp23qndkxkjuf'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]          ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
[^]          ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]                  ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]              ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]                  ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                      ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]              ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                      ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]                  ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   zgvwkir  neuron@develop%nvhpc@22.2+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake
 -   ocv5kkj      ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake
 -   55wtnz6      ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
[+]  dnxbrdu      ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  bfwiaoz          ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  m65zs3l          ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
[^]  hyunzkn          ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  btmx4zs          ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  utj47fz              ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ihxi5rl                  ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  evtnqzd                  ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  x72vveu              ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  cnhmkfz          ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  onq3mhg              ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]  4ectow5                  ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  72xzp3v                      ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  22arfs4              ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ascbeii                  ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  kvw3vhm                  ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  7iyiygo                  ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  c7qvw2q                      ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  mazoiox                  ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  y7rfzdj                  ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  v4z3s5e                  ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  w4gddqx                  ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ci5oe5b              ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]  xj2wlac                  ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  xtett6q              ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  dzb2mfs                  ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  5fkun4i          ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   xzdnug7      ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake
[^]  iu2b5hx      ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake
[^]  3rmq3zx          ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake
[^]  hxxlexb          ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake
[^]  dnxqn2k          ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake
[^]  jzpqn5y              ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake
[^]  ams67cx          ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake
[^]  ir7xtbl          ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake
 -   ij6isvr      ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  n6q4vfz      ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  gjm7kkq      ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake
[^]  r5cvgru          ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake
[^]  h2fsi6i          ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  q5n7ofc      ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  fudvy5v          ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  vwedalx      ^readline@8.1%nvhpc@22.2 arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj)
==> cuda@11.6.0 : has external module in ['cuda/11.6.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-nvk6oo (external cuda-11.6.0-m65zs3ly5k4rtg4jxha5fnoceldudsus)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw)
[+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-vwedalxfrcxjaatlnup77gynyx6weav5)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.0.0.20220218-btmx4z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/coreneuron-develop-dnxbrd
==> Installing neuron-develop-zgvwkirjk6lnt2lvs6vnp23qndkxkjuf
==> No binary for neuron-develop-zgvwkirjk6lnt2lvs6vnp23qndkxkjuf found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-zgvwkirjk6lnt2lvs6vnp23qndkxkjuf
  Fetch: 28.09s.  Build: 25m 24.44s.  Total: 25m 52.53s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/neuron-develop-zgvwki
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/299710/ccache
  Primary config:           /nvme/bbpcihpcproj12/299710/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:            Fri Feb 25 13:46:11 2022
  Hits:                        53 /  799 (6.63 %)
    Direct:                    12 /  808 (1.49 %)
    Preprocessed:              41 /  790 (5.19 %)
  Misses:                     746
    Direct:                   796
    Preprocessed:             749
  Uncacheable:                120
Primary storage:
  Hits:                        65 / 1610 (4.04 %)
  Misses:                    1545
  Cache size (GB):           0.46 / 0.51 (90.30 %)
  Files:                    29711
  Cleanups:                     2
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:          97
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645793172:step_script
[0Ksection_start:1645793172:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256408 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc-8[0;m
[32;1mCreated cache[0;m
section_end:1645793192:archive_cache
[0Ksection_start:1645793192:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256561 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168567 responseStatus[0;m=201 Created token[0;m=vmawn8fq
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256601 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168567 responseStatus[0;m=201 Created token[0;m=vmawn8fq
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256642 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168567 responseStatus[0;m=201 Created token[0;m=vmawn8fq
section_end:1645793194:upload_artifacts_on_success
[0Ksection_start:1645793194:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645793194:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790717:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790717:resolve_secrets
[0Ksection_start:1645790717:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor158261232, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168566
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=8
A slurm job will be created with name GL_J168566_PROD_P112_CP0_C0
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299599
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G  --job-name=GL_J168566_PROD_P112_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=2 --jobid=299599 --cpus-per-task=8 --mem=76G
section_end:1645790739:prepare_executor
[0Ksection_start:1645790739:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n18 via bbpv1.epfl.ch...
section_end:1645790741:prepare_script
[0Ksection_start:1645790741:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790742:get_sources
[0Ksection_start:1645790742:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=265038 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1645790748:restore_cache
[0Ksection_start:1645790748:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (168561)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=265116 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168561 responseStatus[0;m=200 OK token[0;m=TaVk_LDt
section_end:1645790748:download_artifacts
[0Ksection_start:1645790748:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack config blame config[0;m
---                                                                                                           config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168566/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168566/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168566/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168566/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168566/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                            install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                              root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                              projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6                                                            module_roots:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              tcl: $user_cache_path/modules
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                            environments:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10                                                             root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:88       concretization: separately
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12                                                           build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Temporary locations Spack can try to use for builds.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Recommended options are given below.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Builds can be faster in temporary directories on some (e.g., HPC) systems.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Specifying `$tempdir` will ensure use of the default temporary directory
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # (i.e., ``$TMP` or ``$TMPDIR``).
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # Another option that prevents conflicts and potential permission issues is
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # to specify `$user_cache_path/stage`, which ensures each user builds in their
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # home directory.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # A more traditional path uses the value of `$spack/var/spack/stage`, which
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # builds directly inside Spack's instance without staging them in a
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # temporary space.  Problems with specifying a path inside a Spack instance
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # are that it precludes its use as a system package and its ability to be
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # pip installable.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # In any case, if the username is not already in the path, Spack will append
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # the value of `$user` in an attempt to avoid potential conflicts between
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # users in shared temporary spaces.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     #
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # The build stage can be purged with `spack clean --stage` and
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # `spack clean -a`, so it is important that the specified directory uniquely
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:38     # identifies Spack staging to avoid accidentally wiping out non-Spack work.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:73     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:82     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:94     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:99     verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:107    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:113    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:118    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:123    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:128    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:136    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:145    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:150    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:176    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:183    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:191    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:197    shared_linking: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:202    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/etc/spack/defaults/config.yaml:207    terminal_title: False
_builtin                                                                                                        debug: False
[32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/4aqrvmukyzi2vgvnx2ytrojgreyutnpx
[32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m
[32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m
Determined its hash will be bqtg5qzyt2lr4uqpd2id35ufdz36chqk
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/299599/ccache
  Primary config:   /nvme/bbpcihpcproj12/299599/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:    Fri Feb 25 13:06:13 2022
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (89.01 %)
  Files:            32089
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m
==> Error: No installed spec matches the hash: 'bqtg5qzyt2lr4uqpd2id35ufdz36chqk'
[32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]          ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
[^]          ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]                  ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]              ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]              ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]                  ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                      ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]              ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                      ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]                  ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]              ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]                  ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]          ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   bqtg5qz  neuron@develop%nvhpc@22.2+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python~rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-skylake
 -   ocv5kkj      ^bison@3.8.2%nvhpc@22.2 arch=linux-rhel7-skylake
 -   55wtnz6      ^cmake@3.21.4%nvhpc@22.2~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake
[+]  4aqrvmu      ^coreneuron@develop%nvhpc@22.2~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  bfwiaoz          ^boost@1.78.0%nvhpc@22.2+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake
[^]  m65zs3l          ^cuda@11.6.0%nvhpc@22.2~dev arch=linux-rhel7-skylake
[^]  hyunzkn          ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  btmx4zs          ^libsonata-report@1.0.0.20220218%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  utj47fz              ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  ihxi5rl                  ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  evtnqzd                  ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake
[^]  x72vveu              ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  cnhmkfz          ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  onq3mhg              ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake
[^]  4ectow5                  ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  72xzp3v                      ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake
[^]  22arfs4              ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ascbeii                  ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  kvw3vhm                  ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  7iyiygo                  ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  c7qvw2q                      ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  mazoiox                  ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  y7rfzdj                  ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  v4z3s5e                  ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  w4gddqx                  ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  ci5oe5b              ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake
[^]  xj2wlac                  ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  xtett6q              ^py-sympy@1.8%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  dzb2mfs                  ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  5fkun4i          ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake
 -   xzdnug7      ^flex@2.6.3%nvhpc@22.2+lex~nls arch=linux-rhel7-skylake
[^]  iu2b5hx      ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake
[^]  3rmq3zx          ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake
[^]  hxxlexb          ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake
[^]  dnxqn2k          ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake
[^]  jzpqn5y              ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake
[^]  ams67cx          ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake
[^]  ir7xtbl          ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake
 -   ij6isvr      ^ninja@1.10.2%nvhpc@22.2 arch=linux-rhel7-skylake
[^]  n6q4vfz      ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  gjm7kkq      ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake
[^]  r5cvgru          ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake
[^]  h2fsi6i          ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  q5n7ofc      ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  fudvy5v          ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake
[^]  vwedalx      ^readline@8.1%nvhpc@22.2 arch=linux-rhel7-skylake

[32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-ocv5kkjjvqshvbpp4gh3xrg4aj3xxh2k)
==> cmake@3.21.4 : has external module in ['cmake/3.21.4']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-55wtnz6tfxjhgdgfbzzwzuhyl746wv7j)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-bfwiaozbrpjr7blzjkfcz67vabdnspxj)
==> cuda@11.6.0 : has external module in ['cuda/11.6.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.0-nvk6oo (external cuda-11.6.0-m65zs3ly5k4rtg4jxha5fnoceldudsus)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-x72vve
==> python@3.9.7 : has external module in ['python/3.9.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-xzdnug7pkmqiem4ll6p4chgbnwyt7epd)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw)
[+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u)
==> ninja@1.10.2 : has external module in ['ninja/1.10.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-ij6isvr7fpc6nbooavdi3abtviuzpngb)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-vwedalxfrcxjaatlnup77gynyx6weav5)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.0.0.20220218-btmx4z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.8-xtett6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_gcc-11.2.0-skylake/nmodl-develop-cnhmkf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/coreneuron-develop-4aqrvm
==> Installing neuron-develop-bqtg5qzyt2lr4uqpd2id35ufdz36chqk
==> No binary for neuron-develop-bqtg5qzyt2lr4uqpd2id35ufdz36chqk found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-bqtg5qzyt2lr4uqpd2id35ufdz36chqk
  Fetch: 30.28s.  Build: 29m 26.54s.  Total: 29m 56.82s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/software/install_nvhpc-22.2-skylake/neuron-develop-bqtg5q
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/299599/ccache
  Primary config:           /nvme/bbpcihpcproj12/299599/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf
  Stats updated:            Fri Feb 25 13:37:05 2022
  Hits:                        15 /  799 (1.88 %)
    Direct:                     8 /  808 (0.99 %)
    Preprocessed:               7 /  794 (0.88 %)
  Misses:                     784
    Direct:                   800
    Preprocessed:             787
  Uncacheable:                120
Primary storage:
  Hits:                        26 / 1610 (1.61 %)
  Misses:                    1584
  Cache size (GB):           0.45 / 0.51 (88.62 %)
  Files:                    31502
  Cleanups:                     4
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:          97
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                6
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.9.7
Autoloading py-virtualenv/16.7.6
Autoloading py-scipy/1.7.1
Autoloading py-numpy/1.19.5
Autoloading py-mpi4py/3.1.2
Autoloading hpe-mpi/2.25.hmpt
Autoloading py-h5py/3.4.0
Autoloading hdf5/1.10.7
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1645792626:step_script
[0Ksection_start:1645792626:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp-8...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=6789 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-8[0;m
[32;1mCreated cache[0;m
section_end:1645792644:archive_cache
[0Ksection_start:1645792644:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=6902 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168566 responseStatus[0;m=201 Created token[0;m=5Ug1sxxa
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=6939 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168566 responseStatus[0;m=201 Created token[0;m=5Ug1sxxa
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=6979 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=168566 responseStatus[0;m=201 Created token[0;m=5Ug1sxxa
section_end:1645792645:upload_artifacts_on_success
[0Ksection_start:1645792645:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645792646:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## GitLab logs for bluebrain-coreneuron#780
!

## test-coreneuron-mod2c-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790004:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790004:resolve_secrets
[0Ksection_start:1645790004:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor700125446, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168574
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168574_PROD_P112_CP4_C6
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
chown: changing ownership of â/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210/J168559/spack-build/spack-stage-coreneuron-develop-eu4hpbxhafq7qnk2fui2odphdvhionsa/spack-build-eu4hpbx/nrn_checkpoint.tsmâ: No such file or directory
[31;1mERROR: Preparation failed: exit status 2[0;m
[32;1mWill be retried in 3s ...[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor218447719, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168574
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168574_PROD_P112_CP4_C6
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299531
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J168574_PROD_P112_CP4_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299531 --cpus-per-task=1 --mem=30750M
section_end:1645790139:prepare_executor
[0Ksection_start:1645790139:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n18 via bbpv1.epfl.ch...
section_end:1645790142:prepare_script
[0Ksection_start:1645790142:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790143:get_sources
[0Ksection_start:1645790143:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:mod2c:intel (168563)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=247883 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168563 responseStatus[0;m=200 OK token[0;m=d_UusMB3
section_end:1645790144:download_artifacts
[0Ksection_start:1645790144:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n18
   Build name: Linux-icpc
Create new tag: 20220225-1156 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168563/spack-build/spack-stage-coreneuron-develop-m3wj6qrskw2me6loonsphskpme3zo3yx/spack-build-m3wj6qr
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 17: reporting_1
 1/17 Test  #2: interleave_info_constructor_test ...   Passed    3.97 sec
 2/17 Test  #3: alignment_test .....................   Passed    4.10 sec
      Start  7: ring_binqueue_TEST
 3/17 Test  #6: ring_TEST ..........................   Passed    4.19 sec
      Start  8: ring_multisend_TEST
 4/17 Test #17: reporting_1 ........................   Passed    4.19 sec
 5/17 Test  #1: cmd_interface_test .................   Passed    4.27 sec
      Start  9: ring_spike_buffer_TEST
 6/17 Test  #4: queuing_test .......................   Passed    4.32 sec
 7/17 Test  #5: lfp_test ...........................   Passed    4.42 sec
      Start 10: ring_permute1_TEST
 8/17 Test  #7: ring_binqueue_TEST .................   Passed    3.74 sec
      Start 11: ring_permute2_TEST
 9/17 Test #10: ring_permute1_TEST .................   Passed    4.10 sec
      Start 12: ring_gap_TEST
10/17 Test  #9: ring_spike_buffer_TEST .............   Passed    4.33 sec
      Start 13: ring_gap_binqueue_TEST
11/17 Test  #8: ring_multisend_TEST ................   Passed    4.41 sec
      Start 14: ring_gap_multisend_TEST
12/17 Test #11: ring_permute2_TEST .................   Passed    2.08 sec
      Start 15: ring_gap_permute1_TEST
13/17 Test #12: ring_gap_TEST ......................   Passed    4.21 sec
      Start 16: ring_gap_permute2_TEST
14/17 Test #14: ring_gap_multisend_TEST ............   Passed    4.64 sec
15/17 Test #13: ring_gap_binqueue_TEST .............   Passed    4.89 sec
16/17 Test #15: ring_gap_permute1_TEST .............   Passed    3.57 sec
17/17 Test #16: ring_gap_permute2_TEST .............   Passed    1.75 sec

100% tests passed, 0 tests failed out of 17

Total Test time (real) =  14.64 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645790211:step_script
[0Ksection_start:1645790211:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=250217 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168574 responseStatus[0;m=201 Created token[0;m=6UVfwA6k
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=250252 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168574 responseStatus[0;m=201 Created token[0;m=6UVfwA6k
section_end:1645790212:upload_artifacts_on_success
[0Ksection_start:1645790212:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645790213:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-mod2c-nvhpc-acc-unified.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790462:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790462:resolve_secrets
[0Ksection_start:1645790462:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor243433383, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168571
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168571_PROD_P112_CP3_C4
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 299549
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J168571_PROD_P112_CP3_C4 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299549 --cpus-per-task=1 --mem=30750M
section_end:1645790485:prepare_executor
[0Ksection_start:1645790485:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1645790485:prepare_script
[0Ksection_start:1645790485:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790486:get_sources
[0Ksection_start:1645790486:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc:unified (168560)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=8807 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168560 responseStatus[0;m=200 OK token[0;m=qtPM8ALk
section_end:1645790487:download_artifacts
[0Ksection_start:1645790487:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n18
   Build name: Linux-nvc++
Create new tag: 20220225-1201 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168560/spack-build/spack-stage-coreneuron-develop-yazrst2oenpi6vjys22z2msqlominpwp/spack-build-yazrst2
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 19: reporting_1
 1/19 Test  #1: cmd_interface_test .....................   Passed    2.69 sec
 2/19 Test  #5: lfp_test ...............................   Passed    3.38 sec
      Start  7: ring_binqueue_TEST
 3/19 Test  #4: queuing_test ...........................   Passed    3.39 sec
 4/19 Test #19: reporting_1 ............................   Passed   10.62 sec
      Start  8: ring_multisend_TEST
 5/19 Test  #2: interleave_info_constructor_test .......   Passed   10.81 sec
 6/19 Test  #3: alignment_test .........................   Passed   10.94 sec
      Start  9: ring_spike_buffer_TEST
 7/19 Test  #7: ring_binqueue_TEST .....................   Passed   12.81 sec
      Start 10: ring_permute1_TEST
 8/19 Test  #6: ring_TEST ..............................   Passed   16.29 sec
      Start 11: ring_permute2_TEST
 9/19 Test  #9: ring_spike_buffer_TEST .................   Passed   11.22 sec
      Start 12: ring_gap_TEST
10/19 Test  #8: ring_multisend_TEST ....................   Passed   11.62 sec
      Start 13: ring_gap_binqueue_TEST
11/19 Test #10: ring_permute1_TEST .....................   Passed   11.45 sec
      Start 14: ring_gap_multisend_TEST
12/19 Test #11: ring_permute2_TEST .....................   Passed   11.46 sec
      Start 15: ring_gap_permute1_TEST
13/19 Test #12: ring_gap_TEST ..........................   Passed  244.35 sec
      Start 16: ring_gap_permute2_TEST
14/19 Test #13: ring_gap_binqueue_TEST .................   Passed  244.55 sec
      Start 17: ring_permute2_cudaInterface_TEST
15/19 Test #15: ring_gap_permute1_TEST .................   Passed  243.03 sec
      Start 18: ring_gap_permute2_cudaInterface_TEST
16/19 Test #14: ring_gap_multisend_TEST ................   Passed  243.35 sec
17/19 Test #17: ring_permute2_cudaInterface_TEST .......   Passed   22.19 sec
18/19 Test #18: ring_gap_permute2_cudaInterface_TEST ...   Passed   38.19 sec
19/19 Test #16: ring_gap_permute2_TEST .................   Passed   42.88 sec

100% tests passed, 0 tests failed out of 19

Total Test time (real) = 309.42 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645790823:step_script
[0Ksection_start:1645790823:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=13406 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168571 responseStatus[0;m=201 Created token[0;m=UdushyK3
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=13437 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168571 responseStatus[0;m=201 Created token[0;m=UdushyK3
section_end:1645790824:upload_artifacts_on_success
[0Ksection_start:1645790824:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645790826:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-mod2c-nvhpc-acc.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790141:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790141:resolve_secrets
[0Ksection_start:1645790141:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor113264121, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168570
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168570_PROD_P112_CP5_C7
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 299534
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J168570_PROD_P112_CP5_C7 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299534 --cpus-per-task=1 --mem=30750M
section_end:1645790154:prepare_executor
[0Ksection_start:1645790154:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1645790155:prepare_script
[0Ksection_start:1645790155:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790156:get_sources
[0Ksection_start:1645790156:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (168559)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=5628 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168559 responseStatus[0;m=200 OK token[0;m=ZsSdMeXU
section_end:1645790157:download_artifacts
[0Ksection_start:1645790157:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n18
   Build name: Linux-nvc++
Create new tag: 20220225-1156 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168559/spack-build/spack-stage-coreneuron-develop-eu4hpbxhafq7qnk2fui2odphdvhionsa/spack-build-eu4hpbx
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 19: reporting_1
 1/19 Test  #1: cmd_interface_test .....................   Passed    1.81 sec
 2/19 Test  #3: alignment_test .........................   Passed    2.02 sec
      Start  7: ring_binqueue_TEST
 3/19 Test  #2: interleave_info_constructor_test .......   Passed    3.25 sec
 4/19 Test  #4: queuing_test ...........................   Passed    3.26 sec
      Start  8: ring_multisend_TEST
 5/19 Test  #5: lfp_test ...............................   Passed    3.90 sec
 6/19 Test #19: reporting_1 ............................   Passed   10.23 sec
      Start  9: ring_spike_buffer_TEST
 7/19 Test  #7: ring_binqueue_TEST .....................   Passed   12.21 sec
      Start 10: ring_permute1_TEST
 8/19 Test  #6: ring_TEST ..............................   Passed   14.27 sec
      Start 11: ring_permute2_TEST
 9/19 Test  #8: ring_multisend_TEST ....................   Passed   11.09 sec
      Start 12: ring_gap_TEST
10/19 Test  #9: ring_spike_buffer_TEST .................   Passed    9.07 sec
      Start 13: ring_gap_binqueue_TEST
11/19 Test #10: ring_permute1_TEST .....................   Passed    9.73 sec
      Start 14: ring_gap_multisend_TEST
12/19 Test #11: ring_permute2_TEST .....................   Passed   10.22 sec
      Start 15: ring_gap_permute1_TEST
13/19 Test #12: ring_gap_TEST ..........................   Passed   10.24 sec
      Start 16: ring_gap_permute2_TEST
14/19 Test #13: ring_gap_binqueue_TEST .................   Passed    9.29 sec
      Start 17: ring_permute2_cudaInterface_TEST
15/19 Test #14: ring_gap_multisend_TEST ................   Passed    6.76 sec
      Start 18: ring_gap_permute2_cudaInterface_TEST
16/19 Test #16: ring_gap_permute2_TEST .................   Passed   13.48 sec
17/19 Test #15: ring_gap_permute1_TEST .................   Passed   13.62 sec
18/19 Test #17: ring_permute2_cudaInterface_TEST .......   Passed    9.64 sec
19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ...   Passed    9.67 sec

100% tests passed, 0 tests failed out of 19

Total Test time (real) =  40.42 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645790223:step_script
[0Ksection_start:1645790223:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=7696 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168570 responseStatus[0;m=201 Created token[0;m=DJ3AVyiu
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=7726 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168570 responseStatus[0;m=201 Created token[0;m=DJ3AVyiu
section_end:1645790224:upload_artifacts_on_success
[0Ksection_start:1645790224:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645790225:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790822:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790822:resolve_secrets
[0Ksection_start:1645790822:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor507242356, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168575
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168575_PROD_P112_CP7_C9
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299605
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J168575_PROD_P112_CP7_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299605 --cpus-per-task=1 --mem=30750M
section_end:1645790841:prepare_executor
[0Ksection_start:1645790841:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i4n18 via bbpv1.epfl.ch...
section_end:1645790844:prepare_script
[0Ksection_start:1645790844:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790845:get_sources
[0Ksection_start:1645790845:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:nmodl:intel (168564)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=266786 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168564 responseStatus[0;m=200 OK token[0;m=kDERLrn4
section_end:1645790848:download_artifacts
[0Ksection_start:1645790848:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n17
   Build name: Linux-icpc
Create new tag: 20220225-1207 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168564/spack-build/spack-stage-coreneuron-develop-hjoctunjmyugp3uctz2hvc3l7iujnh2j/spack-build-hjoctun
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 17: reporting_1
 1/17 Test  #6: ring_TEST ..........................   Passed    2.54 sec
      Start  7: ring_binqueue_TEST
 2/17 Test #17: reporting_1 ........................   Passed    2.57 sec
 3/17 Test  #1: cmd_interface_test .................   Passed    2.77 sec
      Start  8: ring_multisend_TEST
 4/17 Test  #2: interleave_info_constructor_test ...   Passed    3.04 sec
 5/17 Test  #3: alignment_test .....................   Passed    3.05 sec
      Start  9: ring_spike_buffer_TEST
 6/17 Test  #4: queuing_test .......................   Passed    3.21 sec
 7/17 Test  #5: lfp_test ...........................   Passed    3.39 sec
      Start 10: ring_permute1_TEST
 8/17 Test  #7: ring_binqueue_TEST .................   Passed    2.34 sec
      Start 11: ring_permute2_TEST
 9/17 Test  #9: ring_spike_buffer_TEST .............   Passed    3.56 sec
      Start 12: ring_gap_TEST
10/17 Test #10: ring_permute1_TEST .................   Passed    3.47 sec
      Start 13: ring_gap_binqueue_TEST
11/17 Test  #8: ring_multisend_TEST ................   Passed    4.25 sec
      Start 14: ring_gap_multisend_TEST
12/17 Test #11: ring_permute2_TEST .................   Passed    2.14 sec
      Start 15: ring_gap_permute1_TEST
13/17 Test #12: ring_gap_TEST ......................   Passed    0.90 sec
      Start 16: ring_gap_permute2_TEST
14/17 Test #13: ring_gap_binqueue_TEST .............   Passed    1.99 sec
15/17 Test #14: ring_gap_multisend_TEST ............   Passed    3.21 sec
16/17 Test #15: ring_gap_permute1_TEST .............   Passed    3.26 sec
17/17 Test #16: ring_gap_permute2_TEST .............   Passed    2.85 sec

100% tests passed, 0 tests failed out of 17

Total Test time (real) =  10.39 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645790887:step_script
[0Ksection_start:1645790887:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=269682 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168575 responseStatus[0;m=201 Created token[0;m=keTySssx
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=269722 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168575 responseStatus[0;m=201 Created token[0;m=keTySssx
section_end:1645790888:upload_artifacts_on_success
[0Ksection_start:1645790888:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645790889:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-nmodl-nvhpc-acc.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645791414:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645791414:resolve_secrets
[0Ksection_start:1645791414:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor213416122, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168573
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168573_PROD_P112_CP4_C3
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 299711
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J168573_PROD_P112_CP4_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299711 --cpus-per-task=1 --mem=30750M
section_end:1645791443:prepare_executor
[0Ksection_start:1645791443:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1645791444:prepare_script
[0Ksection_start:1645791444:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645791445:get_sources
[0Ksection_start:1645791445:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (168562)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=15423 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168562 responseStatus[0;m=200 OK token[0;m=M65dgeFY
section_end:1645791445:download_artifacts
[0Ksection_start:1645791445:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n17
   Build name: Linux-nvc++
Create new tag: 20220225-1217 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168562/spack-build/spack-stage-coreneuron-develop-dnxbrduez2m4zqbybmy5gptv7esox5ao/spack-build-dnxbrdu
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 19: reporting_1
 1/19 Test  #1: cmd_interface_test .....................   Passed    3.09 sec
 2/19 Test  #4: queuing_test ...........................   Passed    3.25 sec
      Start  7: ring_binqueue_TEST
 3/19 Test  #5: lfp_test ...............................   Passed    3.43 sec
 4/19 Test  #3: alignment_test .........................   Passed    3.45 sec
      Start  8: ring_multisend_TEST
 5/19 Test  #2: interleave_info_constructor_test .......   Passed    3.60 sec
 6/19 Test #19: reporting_1 ............................   Passed    7.74 sec
      Start  9: ring_spike_buffer_TEST
 7/19 Test  #6: ring_TEST ..............................   Passed    8.82 sec
      Start 10: ring_permute1_TEST
 8/19 Test  #7: ring_binqueue_TEST .....................   Passed    9.70 sec
      Start 11: ring_permute2_TEST
 9/19 Test  #8: ring_multisend_TEST ....................   Passed    9.57 sec
      Start 12: ring_gap_TEST
10/19 Test  #9: ring_spike_buffer_TEST .................   Passed    9.25 sec
      Start 13: ring_gap_binqueue_TEST
11/19 Test #10: ring_permute1_TEST .....................   Passed    8.29 sec
      Start 14: ring_gap_multisend_TEST
12/19 Test #11: ring_permute2_TEST .....................   Passed    8.95 sec
      Start 15: ring_gap_permute1_TEST
13/19 Test #12: ring_gap_TEST ..........................   Passed    9.20 sec
      Start 16: ring_gap_permute2_TEST
14/19 Test #13: ring_gap_binqueue_TEST .................   Passed   36.39 sec
      Start 17: ring_permute2_cudaInterface_TEST
15/19 Test #14: ring_gap_multisend_TEST ................   Passed   46.16 sec
      Start 18: ring_gap_permute2_cudaInterface_TEST
16/19 Test #17: ring_permute2_cudaInterface_TEST .......   Passed   15.54 sec
17/19 Test #16: ring_gap_permute2_TEST .................   Passed   54.51 sec
18/19 Test #15: ring_gap_permute1_TEST .................   Passed   61.45 sec
19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ...   Passed   21.66 sec

100% tests passed, 0 tests failed out of 19

Total Test time (real) =  84.95 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645791558:step_script
[0Ksection_start:1645791558:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=17417 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168573 responseStatus[0;m=201 Created token[0;m=9YtzPoR5
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=17448 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168573 responseStatus[0;m=201 Created token[0;m=9YtzPoR5
section_end:1645791559:upload_artifacts_on_success
[0Ksection_start:1645791559:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645791562:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-coreneuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645790718:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645790718:resolve_secrets
[0Ksection_start:1645790718:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor674726562, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168572
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168572_PROD_P112_CP6_C5
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 299598
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M  --job-name=GL_J168572_PROD_P112_CP6_C5 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299598 --cpus-per-task=1 --mem=30750M
section_end:1645790739:prepare_executor
[0Ksection_start:1645790739:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1645790740:prepare_script
[0Ksection_start:1645790740:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645790741:get_sources
[0Ksection_start:1645790741:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (168561)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=11048 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168561 responseStatus[0;m=200 OK token[0;m=TaVk_LDt
section_end:1645790742:download_artifacts
[0Ksection_start:1645790742:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i6n19
   Build name: Linux-nvc++
Create new tag: 20220225-1206 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168561/spack-build/spack-stage-coreneuron-develop-4aqrvmukyzi2vgvnx2ytrojgreyutnpx/spack-build-4aqrvmu
      Start  1: cmd_interface_test
      Start  2: interleave_info_constructor_test
      Start  3: alignment_test
      Start  4: queuing_test
      Start  5: lfp_test
      Start  6: ring_TEST
      Start 19: reporting_1
 1/19 Test #19: reporting_1 ............................   Passed    1.44 sec
 2/19 Test  #1: cmd_interface_test .....................   Passed    1.55 sec
      Start  7: ring_binqueue_TEST
 3/19 Test  #2: interleave_info_constructor_test .......   Passed    1.77 sec
 4/19 Test  #3: alignment_test .........................   Passed    1.78 sec
      Start  8: ring_multisend_TEST
 5/19 Test  #4: queuing_test ...........................   Passed    1.92 sec
 6/19 Test  #5: lfp_test ...............................   Passed    2.06 sec
      Start  9: ring_spike_buffer_TEST
 7/19 Test  #6: ring_TEST ..............................   Passed    6.24 sec
      Start 10: ring_permute1_TEST
 8/19 Test  #7: ring_binqueue_TEST .....................   Passed   13.43 sec
      Start 11: ring_permute2_TEST
 9/19 Test  #9: ring_spike_buffer_TEST .................   Passed   16.02 sec
      Start 12: ring_gap_TEST
10/19 Test  #8: ring_multisend_TEST ....................   Passed   16.35 sec
      Start 13: ring_gap_binqueue_TEST
11/19 Test #10: ring_permute1_TEST .....................   Passed   14.04 sec
      Start 14: ring_gap_multisend_TEST
12/19 Test #11: ring_permute2_TEST .....................   Passed   11.60 sec
      Start 15: ring_gap_permute1_TEST
13/19 Test #14: ring_gap_multisend_TEST ................   Passed  114.55 sec
      Start 16: ring_gap_permute2_TEST
14/19 Test #15: ring_gap_permute1_TEST .................   Passed  227.73 sec
      Start 17: ring_permute2_cudaInterface_TEST
15/19 Test #12: ring_gap_TEST ..........................   Passed  241.23 sec
      Start 18: ring_gap_permute2_cudaInterface_TEST
16/19 Test #13: ring_gap_binqueue_TEST .................   Passed  241.29 sec
17/19 Test #16: ring_gap_permute2_TEST .................   Passed  124.89 sec
18/19 Test #17: ring_permute2_cudaInterface_TEST .......   Passed    6.78 sec
19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ...   Passed    4.48 sec

100% tests passed, 0 tests failed out of 19

Total Test time (real) = 263.83 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645791033:step_script
[0Ksection_start:1645791033:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=14269 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168572 responseStatus[0;m=201 Created token[0;m=VRcoEqrW
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=14299 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168572 responseStatus[0;m=201 Created token[0;m=VRcoEqrW
section_end:1645791035:upload_artifacts_on_success
[0Ksection_start:1645791035:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645791035:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-mod2c-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645791179:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645791179:resolve_secrets
[0Ksection_start:1645791179:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor919462630, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168579
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168579_PROD_P112_CP1_C2
Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299678
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G  --job-name=GL_J168579_PROD_P112_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=16 --jobid=299678 --cpus-per-task=1 --mem=76G
section_end:1645791213:prepare_executor
[0Ksection_start:1645791213:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r3i3n17 via bbpv1.epfl.ch...
section_end:1645791214:prepare_script
[0Ksection_start:1645791214:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645791216:get_sources
[0Ksection_start:1645791216:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron:mod2c:intel (168568)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=141437 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168568 responseStatus[0;m=200 OK token[0;m=jxy9318U
section_end:1645791219:download_artifacts
[0Ksection_start:1645791219:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n17
   Build name: Linux-icpc
Create new tag: 20220225-1214 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168568/spack-build/spack-stage-neuron-develop-wkvisp3jgnehn5fqqvlfj6yzldz6c3sg/spack-build-wkvisp3
        Start  33: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  46: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start  52: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start  57: testcorenrn_patstim::coreneuron_cpu_offline::preparation
        Start  63: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
        Start  69: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
        Start  75: testcorenrn_watch::coreneuron_cpu_offline::preparation
  1/105 Test  #46: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    3.72 sec
        Start  81: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/105 Test  #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    3.77 sec
        Start  87: testcorenrn_kin::coreneuron_cpu_offline::preparation
  3/105 Test  #63: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    4.26 sec
        Start  28: external_ringtest::neuron
        Start  36: testcorenrn_bbcore::neuron
  4/105 Test  #52: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    4.58 sec
        Start  29: external_ringtest::neuron_mpi
  5/105 Test  #75: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    4.80 sec
        Start  30: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
  6/105 Test  #57: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    4.86 sec
        Start  31: external_ringtest::coreneuron_cpu_mpi
  7/105 Test  #69: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    4.95 sec
        Start 102: olfactory-bulb-3d::neuron::preparation
  8/105 Test #102: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.02 sec
        Start 104: olfactory-bulb-3d::coreneuron_cpu_online::preparation
  9/105 Test #104: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.02 sec
        Start  25: reduced_dentate::neuron
 10/105 Test  #81: testcorenrn_conc::coreneuron_cpu_offline::preparation ..............   Passed    1.72 sec
        Start  37: testcorenrn_bbcore::coreneuron_cpu_online
 11/105 Test  #87: testcorenrn_kin::coreneuron_cpu_offline::preparation ...............   Passed    1.67 sec
        Start  38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 12/105 Test  #33: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed    5.59 sec
        Start  32: external_ringtest::coreneuron_cpu_mpi_offline
 13/105 Test  #36: testcorenrn_bbcore::neuron .........................................   Passed    1.46 sec
        Start  39: testcorenrn_bbcore::coreneuron_cpu_offline
 14/105 Test  #28: external_ringtest::neuron ..........................................   Passed    2.44 sec
        Start  42: testcorenrn_deriv::neuron
 15/105 Test  #29: external_ringtest::neuron_mpi ......................................   Passed    3.27 sec
        Start  43: testcorenrn_deriv::coreneuron_cpu_online
        Start  44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 16/105 Test  #39: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    2.88 sec
        Start  45: testcorenrn_deriv::coreneuron_cpu_offline
 17/105 Test  #42: testcorenrn_deriv::neuron ..........................................   Passed    2.85 sec
        Start  77: testcorenrn_conc::neuron
 18/105 Test  #45: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed    1.68 sec
        Start  78: testcorenrn_conc::coreneuron_cpu_online
 19/105 Test  #37: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    5.06 sec
        Start  79: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 20/105 Test  #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    5.55 sec
        Start  80: testcorenrn_conc::coreneuron_cpu_offline
 21/105 Test  #43: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed    3.45 sec
        Start  83: testcorenrn_kin::neuron
 22/105 Test  #44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed    3.53 sec
        Start  84: testcorenrn_kin::coreneuron_cpu_online
 23/105 Test  #77: testcorenrn_conc::neuron ...........................................   Passed    1.88 sec
        Start  85: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 24/105 Test  #80: testcorenrn_conc::coreneuron_cpu_offline ...........................   Passed    1.68 sec
        Start  86: testcorenrn_kin::coreneuron_cpu_offline
 25/105 Test  #83: testcorenrn_kin::neuron ............................................   Passed    2.08 sec
        Start  93: channel_benchmark_hippo::neuron
 26/105 Test  #78: testcorenrn_conc::coreneuron_cpu_online ............................   Passed    3.44 sec
        Start  94: channel_benchmark_hippo::coreneuron_cpu_online
 27/105 Test  #79: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ...........   Passed    3.48 sec
        Start  95: channel_benchmark_hippo::coreneuron_cpu_filemode
 28/105 Test  #86: testcorenrn_kin::coreneuron_cpu_offline ............................   Passed    1.54 sec
        Start  97: channel_benchmark_sscx::neuron
 29/105 Test  #84: testcorenrn_kin::coreneuron_cpu_online .............................   Passed    3.07 sec
        Start  98: channel_benchmark_sscx::coreneuron_cpu_online
 30/105 Test  #31: external_ringtest::coreneuron_cpu_mpi ..............................   Passed   10.59 sec
        Start  48: testcorenrn_gf::neuron
 31/105 Test  #32: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed   10.85 sec
        Start  49: testcorenrn_gf::coreneuron_cpu_online
 32/105 Test  #85: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............   Passed    7.14 sec
        Start  99: channel_benchmark_sscx::coreneuron_cpu_filemode
 33/105 Test  #48: testcorenrn_gf::neuron .............................................   Passed    8.02 sec
        Start  50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 34/105 Test  #49: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed   13.82 sec
        Start  51: testcorenrn_gf::coreneuron_cpu_offline
 35/105 Test  #30: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ..........   Passed   25.70 sec
        Start  54: testcorenrn_patstim::neuron
 36/105 Test  #54: testcorenrn_patstim::neuron ........................................   Passed    4.86 sec
        Start  55: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 37/105 Test  #51: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed    9.97 sec
        Start  56: testcorenrn_patstim::coreneuron_cpu_offline
 38/105 Test  #56: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed    6.11 sec
        Start  59: testcorenrn_vecplay::neuron
 39/105 Test  #50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   24.06 sec
        Start  60: testcorenrn_vecplay::coreneuron_cpu_online
 40/105 Test  #55: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............   Passed   13.73 sec
        Start  61: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 41/105 Test  #59: testcorenrn_vecplay::neuron ........................................   Passed    5.43 sec
        Start  62: testcorenrn_vecplay::coreneuron_cpu_offline
 42/105 Test  #60: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed    7.77 sec
        Start  71: testcorenrn_watch::neuron
 43/105 Test  #62: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed    5.49 sec
        Start  72: testcorenrn_watch::coreneuron_cpu_online
 44/105 Test  #71: testcorenrn_watch::neuron ..........................................   Passed    4.38 sec
        Start  73: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 45/105 Test  #61: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   13.25 sec
        Start  74: testcorenrn_watch::coreneuron_cpu_offline
 46/105 Test  #72: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed    8.40 sec
        Start  89: testcorenrn_netstimdirect::direct_netstimdirect
 47/105 Test  #74: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed    4.64 sec
        Start  90: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 48/105 Test  #73: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed   13.60 sec
        Start   1: testneuron
        Start   2: ringtest
 49/105 Test   #1: testneuron .........................................................   Passed    0.06 sec
        Start   3: connect_dend
 50/105 Test   #2: ringtest ...........................................................   Passed    0.27 sec
        Start   4: pynrn_tests::basic_tests
 51/105 Test   #3: connect_dend .......................................................   Passed    0.21 sec
        Start   5: parallel_tests
 52/105 Test  #89: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed    8.52 sec
        Start   6: parallel_partrans
        Start   7: parallel_netpar
 53/105 Test  #90: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   11.40 sec
        Start   8: parallel_bas
        Start   9: coreneuron_modtests::fornetcon_py_cpu
 54/105 Test   #6: parallel_partrans ..................................................   Passed   11.80 sec
        Start  10: coreneuron_modtests::direct_py_cpu
 55/105 Test   #4: pynrn_tests::basic_tests ...........................................   Passed   13.31 sec
        Start  11: coreneuron_modtests::direct_hoc_cpu
 56/105 Test  #11: coreneuron_modtests::direct_hoc_cpu ................................   Passed    8.70 sec
        Start  12: coreneuron_modtests::spikes_py_cpu
 57/105 Test   #9: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed   46.83 sec
        Start  13: coreneuron_modtests::spikes_file_mode_py_cpu
 58/105 Test  #10: coreneuron_modtests::direct_py_cpu .................................   Passed   41.80 sec
        Start  14: coreneuron_modtests::fast_imem_py_cpu
 59/105 Test  #12: coreneuron_modtests::spikes_py_cpu .................................   Passed   42.15 sec
        Start  15: coreneuron_modtests::datareturn_py_cpu
 60/105 Test  #13: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed   42.72 sec
        Start  16: coreneuron_modtests::test_units_py_cpu
 61/105 Test  #14: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed   44.40 sec
        Start  17: coreneuron_modtests::test_netmove_py_cpu
 62/105 Test  #98: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed  171.20 sec
        Start  18: coreneuron_modtests::test_watchrange_py_cpu
 63/105 Test  #15: coreneuron_modtests::datareturn_py_cpu .............................   Passed   50.72 sec
        Start  19: coreneuron_modtests::test_psolve_py_cpu
 64/105 Test  #97: channel_benchmark_sscx::neuron .....................................   Passed  174.25 sec
        Start  20: coreneuron_modtests::test_natrans_py_cpu
 65/105 Test  #93: channel_benchmark_hippo::neuron ....................................   Passed  179.79 sec
        Start  24: external_nrntest
 66/105 Test  #94: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed  180.09 sec
        Start  41: testcorenrn_bbcore::compare_results
 67/105 Test  #41: testcorenrn_bbcore::compare_results ................................   Passed    0.08 sec
        Start  47: testcorenrn_deriv::compare_results
 68/105 Test  #47: testcorenrn_deriv::compare_results .................................   Passed    0.07 sec
        Start  53: testcorenrn_gf::compare_results
 69/105 Test  #53: testcorenrn_gf::compare_results ....................................   Passed    0.06 sec
        Start  58: testcorenrn_patstim::compare_results
 70/105 Test  #58: testcorenrn_patstim::compare_results ...............................   Passed    0.07 sec
        Start  64: testcorenrn_vecplay::compare_results
 71/105 Test  #64: testcorenrn_vecplay::compare_results ...............................   Passed    0.07 sec
        Start  76: testcorenrn_watch::compare_results
 72/105 Test  #76: testcorenrn_watch::compare_results .................................   Passed    0.07 sec
        Start  82: testcorenrn_conc::compare_results
 73/105 Test  #82: testcorenrn_conc::compare_results ..................................   Passed    0.07 sec
        Start  88: testcorenrn_kin::compare_results
 74/105 Test  #99: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed  175.78 sec
        Start  91: testcorenrn_netstimdirect::compare_results
 75/105 Test  #88: testcorenrn_kin::compare_results ...................................   Passed    0.07 sec
        Start 100: channel_benchmark_sscx::compare_results
 76/105 Test  #91: testcorenrn_netstimdirect::compare_results .........................   Passed    0.07 sec
 77/105 Test #100: channel_benchmark_sscx::compare_results ............................   Passed    0.09 sec
        Start  21: coreneuron_modtests::spikes_mpi_py_cpu
 78/105 Test  #95: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed  181.34 sec
        Start  96: channel_benchmark_hippo::compare_results
 79/105 Test  #96: channel_benchmark_hippo::compare_results ...........................   Passed    0.06 sec
 80/105 Test  #21: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed    4.70 sec
        Start  22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
 81/105 Test  #16: coreneuron_modtests::test_units_py_cpu .............................   Passed   32.99 sec
        Start  23: coreneuron_modtests::inputpresyn_py_cpu
 82/105 Test  #25: reduced_dentate::neuron ............................................   Passed  196.52 sec
        Start  26: reduced_dentate::coreneuron_cpu
 83/105 Test  #22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed    2.63 sec
 84/105 Test  #17: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   31.06 sec
 85/105 Test  #18: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed   18.55 sec
        Start  65: testcorenrn_vecevent::neuron
 86/105 Test  #20: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed   15.97 sec
 87/105 Test  #19: coreneuron_modtests::test_psolve_py_cpu ............................   Passed   16.01 sec
 88/105 Test   #7: parallel_netpar ....................................................   Passed  131.34 sec
 89/105 Test  #65: testcorenrn_vecevent::neuron .......................................   Passed    4.01 sec
        Start  34: external_ringtest::coreneuron_cpu_mpi_threads
 90/105 Test  #34: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed    9.78 sec
        Start  66: testcorenrn_vecevent::coreneuron_cpu_online
        Start  35: external_ringtest::compare_results
 91/105 Test  #35: external_ringtest::compare_results .................................   Passed    0.07 sec
 92/105 Test  #66: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed    6.07 sec
        Start  67: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
 93/105 Test   #5: parallel_tests .....................................................   Passed  159.82 sec
        Start  68: testcorenrn_vecevent::coreneuron_cpu_offline
 94/105 Test  #23: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed   33.19 sec
 95/105 Test   #8: parallel_bas .......................................................   Passed  156.07 sec
 96/105 Test  #68: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed    3.79 sec
        Start 101: olfactory-bulb-3d::neuron
 97/105 Test  #26: reduced_dentate::coreneuron_cpu ....................................   Passed   37.71 sec
        Start 103: olfactory-bulb-3d::coreneuron_cpu_online
        Start  27: reduced_dentate::compare_results
 98/105 Test  #67: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed   15.18 sec
        Start  70: testcorenrn_vecevent::compare_results
 99/105 Test  #70: testcorenrn_vecevent::compare_results ..............................   Passed    0.08 sec
100/105 Test  #27: reduced_dentate::compare_results ...................................   Passed    0.15 sec
101/105 Test  #24: external_nrntest ...................................................   Passed  162.58 sec
102/105 Test #103: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed  143.85 sec
103/105 Test #101: olfactory-bulb-3d::neuron ..........................................   Passed  146.25 sec
        Start  92: tqperf::coreneuron
104/105 Test  #92: tqperf::coreneuron .................................................   Passed    5.91 sec
        Start 105: olfactory-bulb-3d::compare_results
105/105 Test #105: olfactory-bulb-3d::compare_results .................................   Passed    0.17 sec

100% tests passed, 0 tests failed out of 105

Total Test time (real) = 389.57 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645791635:step_script
[0Ksection_start:1645791635:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=149670 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168579 responseStatus[0;m=201 Created token[0;m=L4DrwtdE
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=149726 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168579 responseStatus[0;m=201 Created token[0;m=L4DrwtdE
section_end:1645791637:upload_artifacts_on_success
[0Ksection_start:1645791637:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645791638:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-mod2c-nvhpc-acc.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645791916:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645791916:resolve_secrets
[0Ksection_start:1645791916:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor548147011, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168576
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168576_PROD_P112_CP1_C1
Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 299718
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G  --job-name=GL_J168576_PROD_P112_CP1_C1 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=16 --jobid=299718 --cpus-per-task=1 --mem=76G
section_end:1645791958:prepare_executor
[0Ksection_start:1645791958:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1645791959:prepare_script
[0Ksection_start:1645791959:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645791960:get_sources
[0Ksection_start:1645791960:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron:mod2c:nvhpc:acc (168565)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=18731 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168565 responseStatus[0;m=200 OK token[0;m=Pg_dFSN1
section_end:1645791961:download_artifacts
[0Ksection_start:1645791961:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n17
   Build name: Linux-nvc++
Create new tag: 20220225-1226 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168565/spack-build/spack-stage-neuron-develop-jceyoibqlistjtoxixfncsic2t7pmdsp/spack-build-jceyoib
        Start  48: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  53: external_ringtest::coreneuron_gpu_mpi_offline::preparation
        Start  60: testcorenrn_bbcore::coreneuron_gpu_offline::preparation
        Start  64: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  70: testcorenrn_deriv::coreneuron_gpu_offline::preparation
        Start  74: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start  80: testcorenrn_gf::coreneuron_gpu_offline::preparation
        Start  84: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start  89: testcorenrn_patstim::coreneuron_gpu_offline::preparation
        Start  92: testcorenrn_patstim::coreneuron_cpu_offline::preparation
        Start 128: testcorenrn_conc::coreneuron_gpu_offline::preparation
  1/166 Test  #60: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............   Passed    2.02 sec
        Start 132: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/166 Test  #70: testcorenrn_deriv::coreneuron_gpu_offline::preparation .............   Passed    2.47 sec
        Start 138: testcorenrn_kin::coreneuron_gpu_offline::preparation
  3/166 Test  #89: testcorenrn_patstim::coreneuron_gpu_offline::preparation ...........   Passed    2.75 sec
        Start 142: testcorenrn_kin::coreneuron_cpu_offline::preparation
  4/166 Test  #74: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    3.08 sec
        Start  43: external_ringtest::neuron
  5/166 Test #128: testcorenrn_conc::coreneuron_gpu_offline::preparation ..............   Passed    3.16 sec
        Start  56: testcorenrn_bbcore::neuron
  6/166 Test  #64: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    3.21 sec
        Start  57: testcorenrn_bbcore::coreneuron_gpu_online
  7/166 Test  #92: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    3.79 sec
        Start  98: testcorenrn_vecplay::coreneuron_gpu_offline::preparation
  8/166 Test  #80: testcorenrn_gf::coreneuron_gpu_offline::preparation ................   Passed    3.92 sec
        Start 102: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
  9/166 Test  #84: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    4.03 sec
        Start 118: testcorenrn_watch::coreneuron_gpu_offline::preparation
 10/166 Test  #43: external_ringtest::neuron ..........................................   Passed    1.29 sec
        Start  58: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate
 11/166 Test #132: testcorenrn_conc::coreneuron_cpu_offline::preparation ..............   Passed    2.83 sec
        Start  59: testcorenrn_bbcore::coreneuron_gpu_offline
 12/166 Test #138: testcorenrn_kin::coreneuron_gpu_offline::preparation ...............   Passed    2.43 sec
        Start  61: testcorenrn_bbcore::coreneuron_cpu_online
 13/166 Test #142: testcorenrn_kin::coreneuron_cpu_offline::preparation ...............   Passed    2.74 sec
        Start  62: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 14/166 Test  #56: testcorenrn_bbcore::neuron .........................................   Passed    3.25 sec
        Start  63: testcorenrn_bbcore::coreneuron_cpu_offline
 15/166 Test  #98: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ...........   Passed    3.81 sec
        Start 122: testcorenrn_watch::coreneuron_cpu_offline::preparation
 16/166 Test #118: testcorenrn_watch::coreneuron_gpu_offline::preparation .............   Passed    3.65 sec
        Start  44: external_ringtest::neuron_mpi
 17/166 Test #102: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    3.82 sec
        Start  45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 18/166 Test #122: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    2.32 sec
        Start  46: external_ringtest::coreneuron_cpu_mpi
 19/166 Test  #63: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    4.31 sec
        Start  66: testcorenrn_deriv::neuron
 20/166 Test  #61: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    6.34 sec
        Start  67: testcorenrn_deriv::coreneuron_gpu_online
 21/166 Test  #62: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    6.12 sec
        Start  68: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate
 22/166 Test  #59: testcorenrn_bbcore::coreneuron_gpu_offline .........................   Passed    7.67 sec
        Start  69: testcorenrn_deriv::coreneuron_gpu_offline
 23/166 Test  #66: testcorenrn_deriv::neuron ..........................................   Passed    1.86 sec
        Start  71: testcorenrn_deriv::coreneuron_cpu_online
 24/166 Test  #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed   13.27 sec
        Start  47: external_ringtest::coreneuron_cpu_mpi_offline
 25/166 Test  #53: external_ringtest::coreneuron_gpu_mpi_offline::preparation .........   Passed   13.31 sec
        Start  50: external_ringtest::coreneuron_gpu_mpi_offline_saverestore
 26/166 Test  #57: testcorenrn_bbcore::coreneuron_gpu_online ..........................   Passed   10.77 sec
        Start  72: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 27/166 Test  #44: external_ringtest::neuron_mpi ......................................   Passed    6.50 sec
        Start  51: external_ringtest::coreneuron_gpu_mpi
 28/166 Test  #58: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate .........   Passed   10.85 sec
        Start  73: testcorenrn_deriv::coreneuron_cpu_offline
 29/166 Test  #46: external_ringtest::coreneuron_cpu_mpi ..............................   Passed   13.16 sec
        Start  52: external_ringtest::coreneuron_gpu_mpi_offline
 30/166 Test  #69: testcorenrn_deriv::coreneuron_gpu_offline ..........................   Passed   10.57 sec
        Start  87: testcorenrn_patstim::coreneuron_gpu_offline_saverestore
 31/166 Test  #67: testcorenrn_deriv::coreneuron_gpu_online ...........................   Passed   11.88 sec
        Start  88: testcorenrn_patstim::coreneuron_gpu_offline
 32/166 Test  #47: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed   10.43 sec
        Start  76: testcorenrn_gf::neuron
 33/166 Test  #71: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed   12.05 sec
        Start 124: testcorenrn_conc::neuron
 34/166 Test  #76: testcorenrn_gf::neuron .............................................   Passed    2.03 sec
        Start  77: testcorenrn_gf::coreneuron_gpu_online
 35/166 Test #124: testcorenrn_conc::neuron ...........................................   Passed    1.92 sec
        Start 125: testcorenrn_conc::coreneuron_gpu_online
 36/166 Test  #68: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate ..........   Passed   17.31 sec
        Start 126: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate
 37/166 Test  #72: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed   15.02 sec
        Start 127: testcorenrn_conc::coreneuron_gpu_offline
 38/166 Test  #73: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed   13.88 sec
        Start 129: testcorenrn_conc::coreneuron_cpu_online
 39/166 Test  #51: external_ringtest::coreneuron_gpu_mpi ..............................   Passed   14.96 sec
        Start  78: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate
 40/166 Test  #52: external_ringtest::coreneuron_gpu_mpi_offline ......................   Passed   13.18 sec
        Start  79: testcorenrn_gf::coreneuron_gpu_offline
 41/166 Test  #88: testcorenrn_patstim::coreneuron_gpu_offline ........................   Passed   13.23 sec
        Start 130: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 42/166 Test  #77: testcorenrn_gf::coreneuron_gpu_online ..............................   Passed   13.59 sec
        Start  81: testcorenrn_gf::coreneuron_cpu_online
 43/166 Test #125: testcorenrn_conc::coreneuron_gpu_online ............................   Passed   14.36 sec
        Start 131: testcorenrn_conc::coreneuron_cpu_offline
 44/166 Test #127: testcorenrn_conc::coreneuron_gpu_offline ...........................   Passed   11.98 sec
        Start 134: testcorenrn_kin::neuron
 45/166 Test #134: testcorenrn_kin::neuron ............................................   Passed    1.36 sec
        Start 135: testcorenrn_kin::coreneuron_gpu_online
 46/166 Test #129: testcorenrn_conc::coreneuron_cpu_online ............................   Passed   16.16 sec
        Start 136: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate
 47/166 Test #126: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ...........   Passed   28.39 sec
        Start 137: testcorenrn_kin::coreneuron_gpu_offline
 48/166 Test  #87: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............   Passed   34.41 sec
        Start 139: testcorenrn_kin::coreneuron_cpu_online
 49/166 Test #130: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ...........   Passed   21.18 sec
        Start 140: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 50/166 Test  #79: testcorenrn_gf::coreneuron_gpu_offline .............................   Passed   21.48 sec
        Start  82: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 51/166 Test  #78: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate .............   Passed   28.70 sec
        Start  83: testcorenrn_gf::coreneuron_cpu_offline
 52/166 Test #131: testcorenrn_conc::coreneuron_cpu_offline ...........................   Passed   20.39 sec
        Start 141: testcorenrn_kin::coreneuron_cpu_offline
 53/166 Test  #81: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed   22.10 sec
        Start  86: testcorenrn_patstim::neuron
 54/166 Test #135: testcorenrn_kin::coreneuron_gpu_online .............................   Passed   20.15 sec
        Start 148: channel_benchmark_hippo::neuron
 55/166 Test  #86: testcorenrn_patstim::neuron ........................................   Passed    1.62 sec
        Start  90: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 56/166 Test #136: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............   Passed   18.83 sec
        Start 149: channel_benchmark_hippo::coreneuron_gpu_online
 57/166 Test  #45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ..........   Passed   59.87 sec
        Start  91: testcorenrn_patstim::coreneuron_cpu_offline
 58/166 Test #137: testcorenrn_kin::coreneuron_gpu_offline ............................   Passed   17.09 sec
        Start 150: channel_benchmark_hippo::coreneuron_gpu_filemode
 59/166 Test #139: testcorenrn_kin::coreneuron_cpu_online .............................   Passed   18.53 sec
        Start 151: channel_benchmark_hippo::coreneuron_cpu_online
 60/166 Test #140: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............   Passed   18.47 sec
        Start 152: channel_benchmark_hippo::coreneuron_cpu_filemode
 61/166 Test  #50: external_ringtest::coreneuron_gpu_mpi_offline_saverestore ..........   Passed   62.95 sec
        Start  94: testcorenrn_vecplay::neuron
 62/166 Test  #83: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed   20.67 sec
        Start  95: testcorenrn_vecplay::coreneuron_gpu_online
 63/166 Test  #82: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   20.88 sec
        Start  96: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate
 64/166 Test  #94: testcorenrn_vecplay::neuron ........................................   Passed    2.84 sec
        Start  97: testcorenrn_vecplay::coreneuron_gpu_offline
 65/166 Test #141: testcorenrn_kin::coreneuron_cpu_offline ............................   Passed   25.63 sec
        Start 154: channel_benchmark_sscx::neuron
 66/166 Test  #91: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed   30.56 sec
        Start  99: testcorenrn_vecplay::coreneuron_cpu_online
 67/166 Test  #90: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............   Passed   57.99 sec
        Start 100: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 68/166 Test  #99: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed   24.36 sec
        Start 101: testcorenrn_vecplay::coreneuron_cpu_offline
 69/166 Test  #97: testcorenrn_vecplay::coreneuron_gpu_offline ........................   Passed   51.58 sec
        Start 114: testcorenrn_watch::neuron
 70/166 Test  #95: testcorenrn_vecplay::coreneuron_gpu_online .........................   Passed   52.75 sec
        Start 115: testcorenrn_watch::coreneuron_gpu_online
 71/166 Test #114: testcorenrn_watch::neuron ..........................................   Passed    3.71 sec
        Start 116: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate
 72/166 Test #101: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed   28.01 sec
        Start 117: testcorenrn_watch::coreneuron_gpu_offline
 73/166 Test #100: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   37.43 sec
        Start 119: testcorenrn_watch::coreneuron_cpu_online
 74/166 Test  #96: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........   Passed   80.95 sec
        Start 120: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 75/166 Test #115: testcorenrn_watch::coreneuron_gpu_online ...........................   Passed   51.17 sec
        Start 121: testcorenrn_watch::coreneuron_cpu_offline
 76/166 Test #148: channel_benchmark_hippo::neuron ....................................   Passed  125.58 sec
        Start 155: channel_benchmark_sscx::coreneuron_gpu_online
 77/166 Test #117: testcorenrn_watch::coreneuron_gpu_offline ..........................   Passed   39.91 sec
        Start 144: testcorenrn_netstimdirect::direct_netstimdirect
 78/166 Test #116: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate ..........   Passed   62.71 sec
        Start 145: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 79/166 Test #119: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed   44.70 sec
        Start 156: channel_benchmark_sscx::coreneuron_gpu_filemode
        Start 157: channel_benchmark_sscx::coreneuron_cpu_online
 80/166 Test #120: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed   44.24 sec
        Start 158: channel_benchmark_sscx::coreneuron_cpu_filemode
        Start   1: testneuron
 81/166 Test   #1: testneuron .........................................................   Passed    0.06 sec
        Start   2: ringtest
 82/166 Test   #2: ringtest ...........................................................   Passed    0.24 sec
        Start   3: connect_dend
 83/166 Test   #3: connect_dend .......................................................   Passed    0.14 sec
        Start   4: pynrn_tests::basic_tests
 84/166 Test #154: channel_benchmark_sscx::neuron .....................................   Passed  118.95 sec
        Start   5: parallel_tests
 85/166 Test #149: channel_benchmark_hippo::coreneuron_gpu_online .....................   Passed  142.01 sec
        Start   6: parallel_partrans
 86/166 Test #121: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed   30.11 sec
        Start   7: parallel_netpar
        Start   8: parallel_bas
 87/166 Test   #6: parallel_partrans ..................................................   Passed    8.43 sec
        Start   9: coreneuron_modtests::fornetcon_py_cpu
 88/166 Test #144: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed   25.68 sec
        Start  10: coreneuron_modtests::direct_py_cpu
        Start  11: coreneuron_modtests::direct_hoc_cpu
 89/166 Test #150: channel_benchmark_hippo::coreneuron_gpu_filemode ...................   Passed  143.61 sec
        Start  12: coreneuron_modtests::spikes_py_cpu
 90/166 Test #145: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   21.82 sec
        Start  13: coreneuron_modtests::spikes_file_mode_py_cpu
        Start  14: coreneuron_modtests::fast_imem_py_cpu
 91/166 Test  #14: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed    9.41 sec
        Start  15: coreneuron_modtests::datareturn_py_cpu
 92/166 Test   #9: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed   13.94 sec
        Start  16: coreneuron_modtests::test_units_py_cpu
 93/166 Test #152: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed  153.55 sec
        Start  17: coreneuron_modtests::test_netmove_py_cpu
 94/166 Test #151: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed  153.61 sec
        Start  18: coreneuron_modtests::test_watchrange_py_cpu
 95/166 Test   #4: pynrn_tests::basic_tests ...........................................   Passed   25.51 sec
        Start  19: coreneuron_modtests::test_psolve_py_cpu
 96/166 Test   #7: parallel_netpar ....................................................   Passed   19.13 sec
        Start  20: coreneuron_modtests::test_natrans_py_cpu
 97/166 Test   #5: parallel_tests .....................................................   Passed   30.36 sec
        Start  24: coreneuron_modtests::direct_py_gpu
 98/166 Test  #11: coreneuron_modtests::direct_hoc_cpu ................................   Passed   23.97 sec
        Start  25: coreneuron_modtests::direct_hoc_gpu
 99/166 Test  #13: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed   22.87 sec
        Start  26: coreneuron_modtests::spikes_py_gpu
100/166 Test  #10: coreneuron_modtests::direct_py_cpu .................................   Passed   26.47 sec
        Start  27: coreneuron_modtests::spikes_file_mode_py_gpu
101/166 Test   #8: parallel_bas .......................................................   Passed   32.21 sec
        Start  28: coreneuron_modtests::fast_imem_py_gpu
102/166 Test  #12: coreneuron_modtests::spikes_py_cpu .................................   Passed   29.20 sec
        Start  29: coreneuron_modtests::datareturn_py_gpu
103/166 Test  #28: coreneuron_modtests::fast_imem_py_gpu ..............................   Passed   15.12 sec
        Start  30: coreneuron_modtests::test_units_py_gpu
104/166 Test  #20: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed   34.48 sec
        Start  31: coreneuron_modtests::test_netmove_py_gpu
105/166 Test  #18: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed   37.28 sec
        Start  32: coreneuron_modtests::test_watchrange_py_gpu
106/166 Test  #16: coreneuron_modtests::test_units_py_cpu .............................   Passed   38.92 sec
        Start  33: coreneuron_modtests::test_psolve_py_gpu
107/166 Test  #19: coreneuron_modtests::test_psolve_py_cpu ............................   Passed   39.51 sec
        Start  34: coreneuron_modtests::test_natrans_py_gpu
108/166 Test  #17: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   42.87 sec
        Start  38: external_nrntest
109/166 Test  #25: coreneuron_modtests::direct_hoc_gpu ................................   Passed   34.50 sec
        Start  65: testcorenrn_bbcore::compare_results
110/166 Test  #65: testcorenrn_bbcore::compare_results ................................   Passed    0.06 sec
        Start  75: testcorenrn_deriv::compare_results
111/166 Test  #75: testcorenrn_deriv::compare_results .................................   Passed    0.05 sec
        Start  85: testcorenrn_gf::compare_results
112/166 Test  #85: testcorenrn_gf::compare_results ....................................   Passed    0.06 sec
        Start  93: testcorenrn_patstim::compare_results
113/166 Test  #93: testcorenrn_patstim::compare_results ...............................   Passed    0.16 sec
        Start 103: testcorenrn_vecplay::compare_results
114/166 Test #103: testcorenrn_vecplay::compare_results ...............................   Passed    0.23 sec
        Start 123: testcorenrn_watch::compare_results
115/166 Test #123: testcorenrn_watch::compare_results .................................   Passed    0.81 sec
        Start 133: testcorenrn_conc::compare_results
116/166 Test  #15: coreneuron_modtests::datareturn_py_cpu .............................   Passed   47.88 sec
        Start 143: testcorenrn_kin::compare_results
117/166 Test #133: testcorenrn_conc::compare_results ..................................   Passed    0.97 sec
        Start 146: testcorenrn_netstimdirect::compare_results
118/166 Test #146: testcorenrn_netstimdirect::compare_results .........................   Passed    0.11 sec
        Start 153: channel_benchmark_hippo::compare_results
119/166 Test #153: channel_benchmark_hippo::compare_results ...........................   Passed    0.49 sec
120/166 Test #143: testcorenrn_kin::compare_results ...................................   Passed    1.67 sec
        Start  21: coreneuron_modtests::spikes_mpi_py_cpu
121/166 Test  #27: coreneuron_modtests::spikes_file_mode_py_gpu .......................   Passed   36.18 sec
122/166 Test #155: channel_benchmark_sscx::coreneuron_gpu_online ......................   Passed   90.87 sec
        Start  22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
123/166 Test  #24: coreneuron_modtests::direct_py_gpu .................................   Passed   45.08 sec
124/166 Test  #26: coreneuron_modtests::spikes_py_gpu .................................   Passed   43.78 sec
        Start  23: coreneuron_modtests::inputpresyn_py_cpu
125/166 Test  #30: coreneuron_modtests::test_units_py_gpu .............................   Passed   26.37 sec
126/166 Test  #29: coreneuron_modtests::datareturn_py_gpu .............................   Passed   44.78 sec
        Start  35: coreneuron_modtests::spikes_mpi_py_gpu
127/166 Test  #31: coreneuron_modtests::test_netmove_py_gpu ...........................   Passed   29.86 sec
128/166 Test  #32: coreneuron_modtests::test_watchrange_py_gpu ........................   Passed   29.12 sec
        Start  36: coreneuron_modtests::spikes_mpi_file_mode_py_gpu
129/166 Test  #34: coreneuron_modtests::test_natrans_py_gpu ...........................   Passed   26.98 sec
130/166 Test  #33: coreneuron_modtests::test_psolve_py_gpu ............................   Passed   28.91 sec
        Start  37: coreneuron_modtests::inputpresyn_py_gpu
131/166 Test  #21: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed   19.16 sec
132/166 Test  #22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed   18.45 sec
        Start 108: testcorenrn_vecevent::coreneuron_gpu_offline::preparation
133/166 Test  #23: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed   14.12 sec
134/166 Test #108: testcorenrn_vecevent::coreneuron_gpu_offline::preparation ..........   Passed    4.75 sec
        Start 112: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
135/166 Test #112: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    2.78 sec
        Start 161: olfactory-bulb-3d::neuron::preparation
136/166 Test #161: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.06 sec
        Start 163: olfactory-bulb-3d::coreneuron_gpu_online::preparation
137/166 Test #163: olfactory-bulb-3d::coreneuron_gpu_online::preparation ..............   Passed    0.16 sec
        Start 165: olfactory-bulb-3d::coreneuron_cpu_online::preparation
138/166 Test #165: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.05 sec
        Start  39: reduced_dentate::neuron
139/166 Test #157: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed  102.29 sec
140/166 Test  #35: coreneuron_modtests::spikes_mpi_py_gpu .............................   Passed   13.53 sec
        Start  40: reduced_dentate::coreneuron_cpu
141/166 Test #156: channel_benchmark_sscx::coreneuron_gpu_filemode ....................   Passed  102.40 sec
142/166 Test #158: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed  101.73 sec
        Start 159: channel_benchmark_sscx::compare_results
143/166 Test #159: channel_benchmark_sscx::compare_results ............................   Passed    0.16 sec
144/166 Test  #37: coreneuron_modtests::inputpresyn_py_gpu ............................   Passed   11.14 sec
        Start  41: reduced_dentate::coreneuron_gpu
145/166 Test  #36: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ...................   Passed   11.67 sec
146/166 Test  #39: reduced_dentate::neuron ............................................   Passed   22.96 sec
        Start  49: external_ringtest::coreneuron_cpu_mpi_threads
147/166 Test  #49: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed   19.23 sec
        Start  54: external_ringtest::coreneuron_gpu_mpi_threads
148/166 Test  #41: reduced_dentate::coreneuron_gpu ....................................   Passed   50.55 sec
        Start 104: testcorenrn_vecevent::neuron
149/166 Test  #40: reduced_dentate::coreneuron_cpu ....................................   Passed   52.60 sec
        Start 105: testcorenrn_vecevent::coreneuron_gpu_online
        Start  42: reduced_dentate::compare_results
150/166 Test  #42: reduced_dentate::compare_results ...................................   Passed    0.24 sec
151/166 Test #104: testcorenrn_vecevent::neuron .......................................   Passed    2.81 sec
        Start 106: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate
152/166 Test  #54: external_ringtest::coreneuron_gpu_mpi_threads ......................   Passed   21.55 sec
        Start 107: testcorenrn_vecevent::coreneuron_gpu_offline
        Start  55: external_ringtest::compare_results
153/166 Test  #55: external_ringtest::compare_results .................................   Passed    0.07 sec
154/166 Test #105: testcorenrn_vecevent::coreneuron_gpu_online ........................   Passed   14.58 sec
        Start 109: testcorenrn_vecevent::coreneuron_cpu_online
155/166 Test #106: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate .......   Passed   22.23 sec
        Start 110: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
156/166 Test #107: testcorenrn_vecevent::coreneuron_gpu_offline .......................   Passed   14.36 sec
        Start 111: testcorenrn_vecevent::coreneuron_cpu_offline
157/166 Test #109: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed   12.20 sec
        Start 160: olfactory-bulb-3d::neuron
158/166 Test  #38: external_nrntest ...................................................   Passed  124.41 sec
        Start 162: olfactory-bulb-3d::coreneuron_gpu_online
159/166 Test #111: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed   37.45 sec
        Start 164: olfactory-bulb-3d::coreneuron_cpu_online
160/166 Test #110: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed   44.33 sec
        Start 113: testcorenrn_vecevent::compare_results
161/166 Test #113: testcorenrn_vecevent::compare_results ..............................   Passed    0.06 sec
162/166 Test #162: olfactory-bulb-3d::coreneuron_gpu_online ...........................   Passed  108.13 sec
163/166 Test #160: olfactory-bulb-3d::neuron ..........................................   Passed  141.40 sec
164/166 Test #164: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed  113.56 sec
        Start 147: tqperf::coreneuron
165/166 Test #147: tqperf::coreneuron .................................................   Passed   12.20 sec
        Start 166: olfactory-bulb-3d::compare_results
166/166 Test #166: olfactory-bulb-3d::compare_results .................................   Passed    0.23 sec

100% tests passed, 0 tests failed out of 166

Total Test time (real) = 546.86 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645792537:step_script
[0Ksection_start:1645792537:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=30767 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168576 responseStatus[0;m=201 Created token[0;m=Mxjz5wAK
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=30819 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168576 responseStatus[0;m=201 Created token[0;m=Mxjz5wAK
section_end:1645792540:upload_artifacts_on_success
[0Ksection_start:1645792540:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645792541:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-nmodl-intel.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645792613:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645792613:resolve_secrets
[0Ksection_start:1645792613:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor203683326, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168580
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168580_PROD_P112_CP1_C1
Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 299722
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G  --job-name=GL_J168580_PROD_P112_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=16 --jobid=299722 --cpus-per-task=1 --mem=76G
section_end:1645792659:prepare_executor
[0Ksection_start:1645792659:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1645792662:prepare_script
[0Ksection_start:1645792662:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645792663:get_sources
[0Ksection_start:1645792663:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron:nmodl:intel (168569)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=211245 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168569 responseStatus[0;m=200 OK token[0;m=BQV36ESS
section_end:1645792665:download_artifacts
[0Ksection_start:1645792665:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n18
   Build name: Linux-icpc
Create new tag: 20220225-1238 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168569/spack-build/spack-stage-neuron-develop-d237vgeszv2v4juufrm334lj43zgtubf/spack-build-d237vge
        Start  33: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  46: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start  52: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start  57: testcorenrn_patstim::coreneuron_cpu_offline::preparation
        Start  63: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
        Start  69: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
        Start  75: testcorenrn_watch::coreneuron_cpu_offline::preparation
  1/104 Test  #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    2.53 sec
        Start  81: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/104 Test  #57: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    2.93 sec
        Start  87: testcorenrn_kin::coreneuron_cpu_offline::preparation
        Start  28: external_ringtest::neuron
  3/104 Test  #46: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    3.44 sec
        Start  36: testcorenrn_bbcore::neuron
  4/104 Test  #63: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    3.69 sec
        Start  29: external_ringtest::neuron_mpi
  5/104 Test  #52: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    4.26 sec
        Start  30: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
  6/104 Test  #75: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    4.45 sec
        Start  31: external_ringtest::coreneuron_cpu_mpi
  7/104 Test  #69: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    4.61 sec
        Start 101: olfactory-bulb-3d::neuron::preparation
  8/104 Test #101: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.02 sec
        Start 103: olfactory-bulb-3d::coreneuron_cpu_online::preparation
  9/104 Test #103: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.02 sec
        Start  25: reduced_dentate::neuron
 10/104 Test  #33: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed    4.79 sec
        Start  32: external_ringtest::coreneuron_cpu_mpi_offline
 11/104 Test  #87: testcorenrn_kin::coreneuron_cpu_offline::preparation ...............   Passed    2.52 sec
        Start  37: testcorenrn_bbcore::coreneuron_cpu_online
 12/104 Test  #36: testcorenrn_bbcore::neuron .........................................   Passed    2.04 sec
        Start  38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 13/104 Test  #81: testcorenrn_conc::coreneuron_cpu_offline::preparation ..............   Passed    2.97 sec
        Start  39: testcorenrn_bbcore::coreneuron_cpu_offline
 14/104 Test  #28: external_ringtest::neuron ..........................................   Passed    2.97 sec
        Start  42: testcorenrn_deriv::neuron
 15/104 Test  #29: external_ringtest::neuron_mpi ......................................   Passed    3.40 sec
        Start  43: testcorenrn_deriv::coreneuron_cpu_online
        Start  44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 16/104 Test  #32: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed    3.77 sec
        Start  45: testcorenrn_deriv::coreneuron_cpu_offline
        Start  77: testcorenrn_conc::neuron
 17/104 Test  #39: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    3.78 sec
        Start  78: testcorenrn_conc::coreneuron_cpu_online
 18/104 Test  #42: testcorenrn_deriv::neuron ..........................................   Passed    4.56 sec
        Start  79: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 19/104 Test  #45: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed    2.18 sec
        Start  80: testcorenrn_conc::coreneuron_cpu_offline
 20/104 Test  #77: testcorenrn_conc::neuron ...........................................   Passed    2.73 sec
        Start  83: testcorenrn_kin::neuron
 21/104 Test  #37: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    6.38 sec
        Start  84: testcorenrn_kin::coreneuron_cpu_online
 22/104 Test  #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    6.99 sec
        Start  85: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 23/104 Test  #80: testcorenrn_conc::coreneuron_cpu_offline ...........................   Passed    1.81 sec
        Start  86: testcorenrn_kin::coreneuron_cpu_offline
 24/104 Test  #44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed    5.73 sec
        Start  92: channel_benchmark_hippo::neuron
 25/104 Test  #43: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed    6.08 sec
        Start  93: channel_benchmark_hippo::coreneuron_cpu_online
 26/104 Test  #78: testcorenrn_conc::coreneuron_cpu_online ............................   Passed    3.83 sec
        Start  94: channel_benchmark_hippo::coreneuron_cpu_filemode
 27/104 Test  #83: testcorenrn_kin::neuron ............................................   Passed    2.91 sec
        Start  96: channel_benchmark_sscx::neuron
 28/104 Test  #79: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ...........   Passed    4.25 sec
        Start  97: channel_benchmark_sscx::coreneuron_cpu_online
 29/104 Test  #86: testcorenrn_kin::coreneuron_cpu_offline ............................   Passed    4.43 sec
        Start  98: channel_benchmark_sscx::coreneuron_cpu_filemode
 30/104 Test  #31: external_ringtest::coreneuron_cpu_mpi ..............................   Passed   14.16 sec
        Start  48: testcorenrn_gf::neuron
 31/104 Test  #85: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............   Passed    7.19 sec
        Start   1: testneuron
 32/104 Test   #1: testneuron .........................................................   Passed    0.15 sec
        Start   2: ringtest
 33/104 Test   #2: ringtest ...........................................................   Passed    0.33 sec
        Start   3: connect_dend
 34/104 Test  #84: testcorenrn_kin::coreneuron_cpu_online .............................   Passed    8.45 sec
        Start   4: pynrn_tests::basic_tests
 35/104 Test   #3: connect_dend .......................................................   Passed    0.31 sec
        Start   5: parallel_tests
 36/104 Test  #48: testcorenrn_gf::neuron .............................................   Passed    8.81 sec
        Start  49: testcorenrn_gf::coreneuron_cpu_online
 37/104 Test   #4: pynrn_tests::basic_tests ...........................................   Passed    8.82 sec
        Start   6: parallel_partrans
 38/104 Test  #30: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ..........   Passed   30.72 sec
        Start  50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 39/104 Test   #6: parallel_partrans ..................................................   Passed    8.76 sec
        Start   7: parallel_netpar
 40/104 Test   #5: parallel_tests .....................................................   Passed   18.06 sec
        Start   8: parallel_bas
 41/104 Test  #49: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed   14.75 sec
        Start  51: testcorenrn_gf::coreneuron_cpu_offline
 42/104 Test   #7: parallel_netpar ....................................................   Passed   12.06 sec
        Start   9: coreneuron_modtests::fornetcon_py_cpu
 43/104 Test  #51: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed   10.77 sec
        Start  54: testcorenrn_patstim::neuron
 44/104 Test  #54: testcorenrn_patstim::neuron ........................................   Passed    7.30 sec
        Start  55: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 45/104 Test   #9: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed   17.06 sec
        Start  10: coreneuron_modtests::direct_py_cpu
 46/104 Test  #50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   37.25 sec
        Start  56: testcorenrn_patstim::coreneuron_cpu_offline
 47/104 Test   #8: parallel_bas .......................................................   Passed   36.66 sec
        Start  11: coreneuron_modtests::direct_hoc_cpu
 48/104 Test  #55: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............   Passed   15.01 sec
        Start  59: testcorenrn_vecplay::neuron
 49/104 Test  #56: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed    4.90 sec
        Start  60: testcorenrn_vecplay::coreneuron_cpu_online
 50/104 Test  #59: testcorenrn_vecplay::neuron ........................................   Passed    4.30 sec
        Start  61: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 51/104 Test  #11: coreneuron_modtests::direct_hoc_cpu ................................   Passed    9.64 sec
        Start  12: coreneuron_modtests::spikes_py_cpu
 52/104 Test  #10: coreneuron_modtests::direct_py_cpu .................................   Passed   19.13 sec
        Start  13: coreneuron_modtests::spikes_file_mode_py_cpu
 53/104 Test  #60: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed    9.36 sec
        Start  62: testcorenrn_vecplay::coreneuron_cpu_offline
 54/104 Test  #62: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed    5.74 sec
        Start  71: testcorenrn_watch::neuron
 55/104 Test  #61: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   13.87 sec
        Start  72: testcorenrn_watch::coreneuron_cpu_online
 56/104 Test  #71: testcorenrn_watch::neuron ..........................................   Passed    4.56 sec
        Start  73: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 57/104 Test  #72: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed    8.98 sec
        Start  74: testcorenrn_watch::coreneuron_cpu_offline
 58/104 Test  #74: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed    4.74 sec
        Start  89: testcorenrn_netstimdirect::direct_netstimdirect
 59/104 Test  #73: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed   13.03 sec
        Start  90: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 60/104 Test  #13: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed   27.56 sec
        Start  14: coreneuron_modtests::fast_imem_py_cpu
 61/104 Test  #90: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   11.34 sec
        Start  15: coreneuron_modtests::datareturn_py_cpu
        Start  16: coreneuron_modtests::test_units_py_cpu
 62/104 Test  #14: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed   32.63 sec
        Start  17: coreneuron_modtests::test_netmove_py_cpu
 63/104 Test  #89: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed   41.37 sec
        Start  18: coreneuron_modtests::test_watchrange_py_cpu
        Start  19: coreneuron_modtests::test_psolve_py_cpu
 64/104 Test  #12: coreneuron_modtests::spikes_py_cpu .................................   Passed   66.88 sec
        Start  20: coreneuron_modtests::test_natrans_py_cpu
 65/104 Test  #25: reduced_dentate::neuron ............................................   Passed  170.04 sec
        Start  26: reduced_dentate::coreneuron_cpu
 66/104 Test  #16: coreneuron_modtests::test_units_py_cpu .............................   Passed   60.54 sec
        Start  24: external_nrntest
 67/104 Test  #97: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed  179.78 sec
        Start  41: testcorenrn_bbcore::compare_results
 68/104 Test  #41: testcorenrn_bbcore::compare_results ................................   Passed    0.08 sec
        Start  47: testcorenrn_deriv::compare_results
 69/104 Test  #47: testcorenrn_deriv::compare_results .................................   Passed    0.07 sec
        Start  53: testcorenrn_gf::compare_results
 70/104 Test  #53: testcorenrn_gf::compare_results ....................................   Passed    0.07 sec
        Start  58: testcorenrn_patstim::compare_results
 71/104 Test  #58: testcorenrn_patstim::compare_results ...............................   Passed    0.07 sec
        Start  64: testcorenrn_vecplay::compare_results
 72/104 Test  #64: testcorenrn_vecplay::compare_results ...............................   Passed    0.07 sec
        Start  76: testcorenrn_watch::compare_results
 73/104 Test  #76: testcorenrn_watch::compare_results .................................   Passed    0.14 sec
        Start  82: testcorenrn_conc::compare_results
 74/104 Test  #82: testcorenrn_conc::compare_results ..................................   Passed    0.07 sec
        Start  88: testcorenrn_kin::compare_results
 75/104 Test  #88: testcorenrn_kin::compare_results ...................................   Passed    0.07 sec
        Start  91: testcorenrn_netstimdirect::compare_results
 76/104 Test  #91: testcorenrn_netstimdirect::compare_results .........................   Passed    0.77 sec
 77/104 Test  #15: coreneuron_modtests::datareturn_py_cpu .............................   Passed   75.51 sec
        Start  21: coreneuron_modtests::spikes_mpi_py_cpu
 78/104 Test  #98: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed  180.95 sec
 79/104 Test  #96: channel_benchmark_sscx::neuron .....................................   Passed  184.30 sec
        Start  22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
 80/104 Test  #93: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed  188.22 sec
        Start  99: channel_benchmark_sscx::compare_results
 81/104 Test  #99: channel_benchmark_sscx::compare_results ............................   Passed    0.29 sec
 82/104 Test  #94: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed  188.68 sec
        Start  23: coreneuron_modtests::inputpresyn_py_cpu
 83/104 Test  #92: channel_benchmark_hippo::neuron ....................................   Passed  189.32 sec
        Start  95: channel_benchmark_hippo::compare_results
 84/104 Test  #95: channel_benchmark_hippo::compare_results ...........................   Passed    0.26 sec
 85/104 Test  #21: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed    5.86 sec
 86/104 Test  #22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed    4.88 sec
        Start  65: testcorenrn_vecevent::neuron
 87/104 Test  #18: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed   55.08 sec
 88/104 Test  #19: coreneuron_modtests::test_psolve_py_cpu ............................   Passed   55.68 sec
 89/104 Test  #17: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   58.52 sec
        Start  66: testcorenrn_vecevent::coreneuron_cpu_online
 90/104 Test  #20: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed   53.18 sec
 91/104 Test  #23: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed    5.39 sec
 92/104 Test  #65: testcorenrn_vecevent::neuron .......................................   Passed    5.52 sec
        Start  34: external_ringtest::coreneuron_cpu_mpi_threads
 93/104 Test  #34: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed    8.01 sec
        Start  67: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
        Start  35: external_ringtest::compare_results
 94/104 Test  #35: external_ringtest::compare_results .................................   Passed    0.08 sec
 95/104 Test  #66: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed   33.39 sec
        Start  68: testcorenrn_vecevent::coreneuron_cpu_offline
 96/104 Test  #68: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed    4.45 sec
        Start 100: olfactory-bulb-3d::neuron
 97/104 Test  #26: reduced_dentate::coreneuron_cpu ....................................   Passed   96.84 sec
        Start 102: olfactory-bulb-3d::coreneuron_cpu_online
        Start  27: reduced_dentate::compare_results
 98/104 Test  #27: reduced_dentate::compare_results ...................................   Passed    0.09 sec
 99/104 Test  #67: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed   61.13 sec
        Start  70: testcorenrn_vecevent::compare_results
100/104 Test  #70: testcorenrn_vecevent::compare_results ..............................   Passed    0.07 sec
101/104 Test #100: olfactory-bulb-3d::neuron ..........................................   Passed  171.63 sec
102/104 Test #102: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed  146.66 sec
        Start 104: olfactory-bulb-3d::compare_results
103/104 Test #104: olfactory-bulb-3d::compare_results .................................   Passed    0.21 sec
104/104 Test  #24: external_nrntest ...................................................   Passed  239.96 sec

100% tests passed, 0 tests failed out of 104

Total Test time (real) = 421.74 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645793120:step_script
[0Ksection_start:1645793120:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=219275 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168580 responseStatus[0;m=201 Created token[0;m=wpwu7Kyu
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=219327 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168580 responseStatus[0;m=201 Created token[0;m=wpwu7Kyu
section_end:1645793121:upload_artifacts_on_success
[0Ksection_start:1645793121:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645793124:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-nmodl-nvhpc-acc.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645793198:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645793198:resolve_secrets
[0Ksection_start:1645793198:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor667332834, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168578
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168578_PROD_P112_CP1_C1
Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 299727
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G  --job-name=GL_J168578_PROD_P112_CP1_C1 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=16 --jobid=299727 --cpus-per-task=1 --mem=76G
section_end:1645793239:prepare_executor
[0Ksection_start:1645793239:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1645793241:prepare_script
[0Ksection_start:1645793241:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645793242:get_sources
[0Ksection_start:1645793242:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:acc (168567)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=42821 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168567 responseStatus[0;m=200 OK token[0;m=vmawn8fq
section_end:1645793243:download_artifacts
[0Ksection_start:1645793243:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n17
   Build name: Linux-nvc++
Create new tag: 20220225-1247 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168567/spack-build/spack-stage-neuron-develop-zgvwkirjk6lnt2lvs6vnp23qndkxkjuf/spack-build-zgvwkir
        Start  48: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  53: external_ringtest::coreneuron_gpu_mpi_offline::preparation
        Start  60: testcorenrn_bbcore::coreneuron_gpu_offline::preparation
        Start  64: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  70: testcorenrn_deriv::coreneuron_gpu_offline::preparation
        Start  74: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start  80: testcorenrn_gf::coreneuron_gpu_offline::preparation
        Start  84: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start  89: testcorenrn_patstim::coreneuron_gpu_offline::preparation
        Start  92: testcorenrn_patstim::coreneuron_cpu_offline::preparation
        Start  43: external_ringtest::neuron
  1/145 Test  #60: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............   Passed    2.58 sec
        Start  56: testcorenrn_bbcore::neuron
  2/145 Test  #70: testcorenrn_deriv::coreneuron_gpu_offline::preparation .............   Passed    2.75 sec
        Start  57: testcorenrn_bbcore::coreneuron_gpu_online
  3/145 Test  #43: external_ringtest::neuron ..........................................   Passed    2.85 sec
        Start  58: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate
  4/145 Test  #64: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    2.90 sec
        Start  59: testcorenrn_bbcore::coreneuron_gpu_offline
  5/145 Test  #74: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    2.92 sec
        Start  61: testcorenrn_bbcore::coreneuron_cpu_online
  6/145 Test  #89: testcorenrn_patstim::coreneuron_gpu_offline::preparation ...........   Passed    3.62 sec
        Start  62: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
  7/145 Test  #84: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    3.95 sec
        Start  98: testcorenrn_vecplay::coreneuron_gpu_offline::preparation
  8/145 Test  #92: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    4.01 sec
        Start 102: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
  9/145 Test  #80: testcorenrn_gf::coreneuron_gpu_offline::preparation ................   Passed    4.06 sec
        Start 118: testcorenrn_watch::coreneuron_gpu_offline::preparation
 10/145 Test  #56: testcorenrn_bbcore::neuron .........................................   Passed    1.57 sec
        Start  63: testcorenrn_bbcore::coreneuron_cpu_offline
 11/145 Test  #98: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ...........   Passed    3.54 sec
        Start 122: testcorenrn_watch::coreneuron_cpu_offline::preparation
 12/145 Test #102: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    3.58 sec
        Start  44: external_ringtest::neuron_mpi
 13/145 Test #118: testcorenrn_watch::coreneuron_gpu_offline::preparation .............   Passed    3.55 sec
        Start  45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 14/145 Test  #53: external_ringtest::coreneuron_gpu_mpi_offline::preparation .........   Passed    8.12 sec
        Start  46: external_ringtest::coreneuron_cpu_mpi
 15/145 Test  #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed    8.16 sec
        Start  47: external_ringtest::coreneuron_cpu_mpi_offline
 16/145 Test  #59: testcorenrn_bbcore::coreneuron_gpu_offline .........................   Passed    5.28 sec
        Start  66: testcorenrn_deriv::neuron
 17/145 Test  #57: testcorenrn_bbcore::coreneuron_gpu_online ..........................   Passed    5.95 sec
        Start  67: testcorenrn_deriv::coreneuron_gpu_online
 18/145 Test #122: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    2.35 sec
        Start  50: external_ringtest::coreneuron_gpu_mpi_offline_saverestore
 19/145 Test  #61: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    7.10 sec
        Start  68: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate
 20/145 Test  #63: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    6.32 sec
        Start  69: testcorenrn_deriv::coreneuron_gpu_offline
 21/145 Test  #62: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    7.94 sec
        Start  71: testcorenrn_deriv::coreneuron_cpu_online
 22/145 Test  #44: external_ringtest::neuron_mpi ......................................   Passed    4.08 sec
        Start  51: external_ringtest::coreneuron_gpu_mpi
 23/145 Test  #58: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate .........   Passed    8.85 sec
        Start  72: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 24/145 Test  #66: testcorenrn_deriv::neuron ..........................................   Passed    3.94 sec
        Start  73: testcorenrn_deriv::coreneuron_cpu_offline
 25/145 Test  #69: testcorenrn_deriv::coreneuron_gpu_offline ..........................   Passed    5.64 sec
        Start  87: testcorenrn_patstim::coreneuron_gpu_offline_saverestore
 26/145 Test  #47: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed    9.10 sec
        Start  52: external_ringtest::coreneuron_gpu_mpi_offline
 27/145 Test  #67: testcorenrn_deriv::coreneuron_gpu_online ...........................   Passed   11.81 sec
        Start  88: testcorenrn_patstim::coreneuron_gpu_offline
 28/145 Test  #73: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed    9.00 sec
        Start 127: channel_benchmark_hippo::neuron
 29/145 Test  #72: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed    9.44 sec
        Start 128: channel_benchmark_hippo::coreneuron_gpu_online
 30/145 Test  #71: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed    9.75 sec
        Start 129: channel_benchmark_hippo::coreneuron_gpu_filemode
 31/145 Test  #51: external_ringtest::coreneuron_gpu_mpi ..............................   Passed   10.46 sec
        Start  76: testcorenrn_gf::neuron
 32/145 Test  #68: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate ..........   Passed   12.16 sec
        Start 130: channel_benchmark_hippo::coreneuron_cpu_online
 33/145 Test  #76: testcorenrn_gf::neuron .............................................   Passed    5.70 sec
        Start  77: testcorenrn_gf::coreneuron_gpu_online
 34/145 Test  #88: testcorenrn_patstim::coreneuron_gpu_offline ........................   Passed   13.24 sec
        Start 131: channel_benchmark_hippo::coreneuron_cpu_filemode
 35/145 Test  #52: external_ringtest::coreneuron_gpu_mpi_offline ......................   Passed   19.48 sec
        Start  78: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate
 36/145 Test  #46: external_ringtest::coreneuron_cpu_mpi ..............................   Passed   41.35 sec
        Start  79: testcorenrn_gf::coreneuron_gpu_offline
 37/145 Test  #87: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............   Passed   37.41 sec
        Start 133: channel_benchmark_sscx::neuron
 38/145 Test  #77: testcorenrn_gf::coreneuron_gpu_online ..............................   Passed   44.57 sec
        Start  81: testcorenrn_gf::coreneuron_cpu_online
 39/145 Test  #45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ..........   Passed   67.22 sec
        Start  82: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 40/145 Test  #50: external_ringtest::coreneuron_gpu_mpi_offline_saverestore ..........   Passed   70.21 sec
        Start  83: testcorenrn_gf::coreneuron_cpu_offline
 41/145 Test  #83: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed   23.63 sec
        Start  86: testcorenrn_patstim::neuron
 42/145 Test  #78: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate .............   Passed   69.24 sec
        Start  90: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 43/145 Test  #86: testcorenrn_patstim::neuron ........................................   Passed    3.50 sec
        Start  91: testcorenrn_patstim::coreneuron_cpu_offline
 44/145 Test  #82: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   38.65 sec
        Start  94: testcorenrn_vecplay::neuron
 45/145 Test  #79: testcorenrn_gf::coreneuron_gpu_offline .............................   Passed   65.40 sec
        Start  95: testcorenrn_vecplay::coreneuron_gpu_online
 46/145 Test  #94: testcorenrn_vecplay::neuron ........................................   Passed    3.08 sec
        Start  96: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate
 47/145 Test  #91: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed   15.29 sec
        Start  97: testcorenrn_vecplay::coreneuron_gpu_offline
 48/145 Test  #90: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............   Passed   37.02 sec
        Start  99: testcorenrn_vecplay::coreneuron_cpu_online
 49/145 Test #128: channel_benchmark_hippo::coreneuron_gpu_online .....................   Passed  129.24 sec
        Start 134: channel_benchmark_sscx::coreneuron_gpu_online
 50/145 Test #129: channel_benchmark_hippo::coreneuron_gpu_filemode ...................   Passed  129.58 sec
        Start 135: channel_benchmark_sscx::coreneuron_gpu_filemode
 51/145 Test #130: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed  131.63 sec
        Start 136: channel_benchmark_sscx::coreneuron_cpu_online
 52/145 Test  #97: testcorenrn_vecplay::coreneuron_gpu_offline ........................   Passed   31.90 sec
        Start 100: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 53/145 Test #127: channel_benchmark_hippo::neuron ....................................   Passed  134.67 sec
        Start 137: channel_benchmark_sscx::coreneuron_cpu_filemode
 54/145 Test  #99: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed   21.56 sec
        Start 101: testcorenrn_vecplay::coreneuron_cpu_offline
 55/145 Test  #95: testcorenrn_vecplay::coreneuron_gpu_online .........................   Passed   54.58 sec
        Start 114: testcorenrn_watch::neuron
 56/145 Test #131: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed  139.67 sec
        Start   1: testneuron
 57/145 Test   #1: testneuron .........................................................   Passed    0.06 sec
        Start   2: ringtest
 58/145 Test   #2: ringtest ...........................................................   Passed    0.24 sec
        Start   3: connect_dend
 59/145 Test   #3: connect_dend .......................................................   Passed    0.14 sec
        Start   4: pynrn_tests::basic_tests
 60/145 Test #114: testcorenrn_watch::neuron ..........................................   Passed    5.81 sec
        Start 115: testcorenrn_watch::coreneuron_gpu_online
 61/145 Test   #4: pynrn_tests::basic_tests ...........................................   Passed    4.57 sec
        Start   5: parallel_tests
 62/145 Test #133: channel_benchmark_sscx::neuron .....................................   Passed  124.98 sec
        Start   6: parallel_partrans
 63/145 Test #100: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   26.27 sec
        Start 116: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate
 64/145 Test   #6: parallel_partrans ..................................................   Passed    9.37 sec
        Start   7: parallel_netpar
 65/145 Test   #5: parallel_tests .....................................................   Passed   11.79 sec
        Start   8: parallel_bas
 66/145 Test #101: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed   25.96 sec
        Start 117: testcorenrn_watch::coreneuron_gpu_offline
 67/145 Test   #7: parallel_netpar ....................................................   Passed    5.22 sec
        Start   9: coreneuron_modtests::fornetcon_py_cpu
 68/145 Test   #8: parallel_bas .......................................................   Passed   20.91 sec
        Start  10: coreneuron_modtests::direct_py_cpu
 69/145 Test #115: testcorenrn_watch::coreneuron_gpu_online ...........................   Passed   37.65 sec
        Start 119: testcorenrn_watch::coreneuron_cpu_online
 70/145 Test   #9: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed   20.78 sec
        Start  11: coreneuron_modtests::direct_hoc_cpu
 71/145 Test  #81: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed  143.27 sec
        Start 120: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 72/145 Test  #10: coreneuron_modtests::direct_py_cpu .................................   Passed    9.07 sec
        Start  12: coreneuron_modtests::spikes_py_cpu
 73/145 Test #117: testcorenrn_watch::coreneuron_gpu_offline ..........................   Passed   41.05 sec
        Start 121: testcorenrn_watch::coreneuron_cpu_offline
 74/145 Test  #11: coreneuron_modtests::direct_hoc_cpu ................................   Passed   23.80 sec
        Start  13: coreneuron_modtests::spikes_file_mode_py_cpu
 75/145 Test #119: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed   27.93 sec
        Start 124: testcorenrn_netstimdirect::direct_netstimdirect
 76/145 Test  #12: coreneuron_modtests::spikes_py_cpu .................................   Passed   22.83 sec
        Start  14: coreneuron_modtests::fast_imem_py_cpu
 77/145 Test  #96: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........   Passed  127.89 sec
        Start 125: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 78/145 Test  #14: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed    1.71 sec
        Start  15: coreneuron_modtests::datareturn_py_cpu
 79/145 Test #120: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed   35.09 sec
        Start  16: coreneuron_modtests::test_units_py_cpu
        Start  17: coreneuron_modtests::test_netmove_py_cpu
 80/145 Test #116: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate ..........   Passed   72.20 sec
        Start  18: coreneuron_modtests::test_watchrange_py_cpu
        Start  19: coreneuron_modtests::test_psolve_py_cpu
 81/145 Test #121: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed   21.61 sec
        Start  20: coreneuron_modtests::test_natrans_py_cpu
        Start  24: coreneuron_modtests::direct_py_gpu
 82/145 Test  #13: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed   17.52 sec
        Start  25: coreneuron_modtests::direct_hoc_gpu
 83/145 Test #124: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed   16.73 sec
        Start  21: coreneuron_modtests::spikes_mpi_py_cpu
 84/145 Test  #15: coreneuron_modtests::datareturn_py_cpu .............................   Passed   13.88 sec
        Start  26: coreneuron_modtests::spikes_py_gpu
 85/145 Test #134: channel_benchmark_sscx::coreneuron_gpu_online ......................   Passed  109.38 sec
        Start  27: coreneuron_modtests::spikes_file_mode_py_gpu
 86/145 Test #135: channel_benchmark_sscx::coreneuron_gpu_filemode ....................   Passed  109.04 sec
        Start  28: coreneuron_modtests::fast_imem_py_gpu
 87/145 Test  #28: coreneuron_modtests::fast_imem_py_gpu ..............................   Passed    2.31 sec
        Start  29: coreneuron_modtests::datareturn_py_gpu
 88/145 Test  #16: coreneuron_modtests::test_units_py_cpu .............................   Passed   11.80 sec
        Start  30: coreneuron_modtests::test_units_py_gpu
 89/145 Test  #17: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   12.86 sec
        Start  31: coreneuron_modtests::test_netmove_py_gpu
 90/145 Test #125: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   19.30 sec
        Start  22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
 91/145 Test #137: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed  108.97 sec
        Start  32: coreneuron_modtests::test_watchrange_py_gpu
 92/145 Test  #20: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed   14.11 sec
        Start  33: coreneuron_modtests::test_psolve_py_gpu
 93/145 Test  #19: coreneuron_modtests::test_psolve_py_cpu ............................   Passed   14.39 sec
        Start  34: coreneuron_modtests::test_natrans_py_gpu
 94/145 Test  #18: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed   14.43 sec
        Start  38: external_nrntest
 95/145 Test  #24: coreneuron_modtests::direct_py_gpu .................................   Passed   14.32 sec
        Start  65: testcorenrn_bbcore::compare_results
 96/145 Test  #65: testcorenrn_bbcore::compare_results ................................   Passed    0.07 sec
        Start  75: testcorenrn_deriv::compare_results
 97/145 Test  #75: testcorenrn_deriv::compare_results .................................   Passed    0.08 sec
        Start  85: testcorenrn_gf::compare_results
 98/145 Test  #85: testcorenrn_gf::compare_results ....................................   Passed    0.10 sec
        Start  93: testcorenrn_patstim::compare_results
 99/145 Test  #93: testcorenrn_patstim::compare_results ...............................   Passed    0.14 sec
        Start 103: testcorenrn_vecplay::compare_results
100/145 Test #103: testcorenrn_vecplay::compare_results ...............................   Passed    0.07 sec
        Start 123: testcorenrn_watch::compare_results
101/145 Test #123: testcorenrn_watch::compare_results .................................   Passed    0.06 sec
        Start 126: testcorenrn_netstimdirect::compare_results
102/145 Test #126: testcorenrn_netstimdirect::compare_results .........................   Passed    0.07 sec
        Start 132: channel_benchmark_hippo::compare_results
103/145 Test #132: channel_benchmark_hippo::compare_results ...........................   Passed    0.08 sec
104/145 Test #136: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed  114.69 sec
        Start  23: coreneuron_modtests::inputpresyn_py_cpu
105/145 Test  #25: coreneuron_modtests::direct_hoc_gpu ................................   Passed   13.94 sec
        Start 138: channel_benchmark_sscx::compare_results
106/145 Test #138: channel_benchmark_sscx::compare_results ............................   Passed    0.31 sec
107/145 Test  #26: coreneuron_modtests::spikes_py_gpu .................................   Passed   12.16 sec
        Start  35: coreneuron_modtests::spikes_mpi_py_gpu
108/145 Test  #27: coreneuron_modtests::spikes_file_mode_py_gpu .......................   Passed   11.08 sec
109/145 Test  #21: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed   13.60 sec
        Start  36: coreneuron_modtests::spikes_mpi_file_mode_py_gpu
110/145 Test  #30: coreneuron_modtests::test_units_py_gpu .............................   Passed    8.70 sec
        Start  37: coreneuron_modtests::inputpresyn_py_gpu
111/145 Test  #29: coreneuron_modtests::datareturn_py_gpu .............................   Passed    9.15 sec
112/145 Test  #34: coreneuron_modtests::test_natrans_py_gpu ...........................   Passed    5.29 sec
113/145 Test  #32: coreneuron_modtests::test_watchrange_py_gpu ........................   Passed    7.95 sec
114/145 Test  #33: coreneuron_modtests::test_psolve_py_gpu ............................   Passed    5.40 sec
        Start 108: testcorenrn_vecevent::coreneuron_gpu_offline::preparation
115/145 Test  #22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed   10.25 sec
116/145 Test  #31: coreneuron_modtests::test_netmove_py_gpu ...........................   Passed   10.94 sec
117/145 Test #108: testcorenrn_vecevent::coreneuron_gpu_offline::preparation ..........   Passed    6.22 sec
        Start 112: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
118/145 Test #112: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    2.54 sec
        Start 140: olfactory-bulb-3d::neuron::preparation
119/145 Test #140: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.02 sec
        Start 142: olfactory-bulb-3d::coreneuron_gpu_online::preparation
120/145 Test #142: olfactory-bulb-3d::coreneuron_gpu_online::preparation ..............   Passed    0.07 sec
        Start 144: olfactory-bulb-3d::coreneuron_cpu_online::preparation
121/145 Test #144: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.01 sec
        Start  39: reduced_dentate::neuron
122/145 Test  #37: coreneuron_modtests::inputpresyn_py_gpu ............................   Passed   12.21 sec
        Start  40: reduced_dentate::coreneuron_cpu
123/145 Test  #23: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed   15.10 sec
124/145 Test  #36: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ...................   Passed   12.64 sec
        Start  41: reduced_dentate::coreneuron_gpu
125/145 Test  #35: coreneuron_modtests::spikes_mpi_py_gpu .............................   Passed   14.60 sec
126/145 Test  #39: reduced_dentate::neuron ............................................   Passed   22.65 sec
        Start  49: external_ringtest::coreneuron_cpu_mpi_threads
127/145 Test  #40: reduced_dentate::coreneuron_cpu ....................................   Passed   28.30 sec
        Start 104: testcorenrn_vecevent::neuron
128/145 Test  #41: reduced_dentate::coreneuron_gpu ....................................   Passed   28.12 sec
        Start 105: testcorenrn_vecevent::coreneuron_gpu_online
        Start  42: reduced_dentate::compare_results
129/145 Test  #42: reduced_dentate::compare_results ...................................   Passed    0.06 sec
130/145 Test  #49: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed    9.08 sec
        Start  54: external_ringtest::coreneuron_gpu_mpi_threads
131/145 Test #104: testcorenrn_vecevent::neuron .......................................   Passed    2.64 sec
        Start 106: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate
132/145 Test  #54: external_ringtest::coreneuron_gpu_mpi_threads ......................   Passed   15.24 sec
        Start 107: testcorenrn_vecevent::coreneuron_gpu_offline
        Start  55: external_ringtest::compare_results
133/145 Test  #55: external_ringtest::compare_results .................................   Passed    0.07 sec
134/145 Test #105: testcorenrn_vecevent::coreneuron_gpu_online ........................   Passed   18.77 sec
        Start 109: testcorenrn_vecevent::coreneuron_cpu_online
135/145 Test #106: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate .......   Passed   27.14 sec
        Start 110: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
136/145 Test #107: testcorenrn_vecevent::coreneuron_gpu_offline .......................   Passed   15.16 sec
        Start 111: testcorenrn_vecevent::coreneuron_cpu_offline
137/145 Test #109: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed   14.29 sec
        Start 139: olfactory-bulb-3d::neuron
138/145 Test #110: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed   10.10 sec
        Start 141: olfactory-bulb-3d::coreneuron_gpu_online
139/145 Test #111: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed   13.02 sec
        Start 143: olfactory-bulb-3d::coreneuron_cpu_online
        Start 113: testcorenrn_vecevent::compare_results
140/145 Test #113: testcorenrn_vecevent::compare_results ..............................   Passed    0.06 sec
141/145 Test #139: olfactory-bulb-3d::neuron ..........................................   Passed  171.26 sec
142/145 Test #143: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed  171.29 sec
143/145 Test  #38: external_nrntest ...................................................   Passed  270.53 sec
144/145 Test #141: olfactory-bulb-3d::coreneuron_gpu_online ...........................   Passed  200.96 sec
        Start 145: olfactory-bulb-3d::compare_results
145/145 Test #145: olfactory-bulb-3d::compare_results .................................   Passed    0.23 sec

100% tests passed, 0 tests failed out of 145

Total Test time (real) = 553.00 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645793827:step_script
[0Ksection_start:1645793827:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=53815 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168578 responseStatus[0;m=201 Created token[0;m=CzjKDrf_
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=53869 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168578 responseStatus[0;m=201 Created token[0;m=CzjKDrf_
section_end:1645793829:upload_artifacts_on_success
[0Ksection_start:1645793829:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645793830:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1645792649:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1645792649:resolve_secrets
[0Ksection_start:1645792649:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor862164041, slurm job id
Runner ID 29, project root hpc, project name coreneuron
Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168577
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
A slurm job will be created with name GL_J168577_PROD_P112_CP0_C0
Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
Submitted batch job 299723
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G  --job-name=GL_J168577_PROD_P112_CP0_C0 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=16 --jobid=299723 --cpus-per-task=1 --mem=76G
section_end:1645792679:prepare_executor
[0Ksection_start:1645792679:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
section_end:1645792681:prepare_script
[0Ksection_start:1645792681:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1645792682:get_sources
[0Ksection_start:1645792682:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
[32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:omp (168566)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=32160 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=168566 responseStatus[0;m=200 OK token[0;m=5Ug1sxxa
section_end:1645792683:download_artifacts
[0Ksection_start:1645792683:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i4n18
   Build name: Linux-nvc++
Create new tag: 20220225-1238 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168566/spack-build/spack-stage-neuron-develop-bqtg5qzyt2lr4uqpd2id35ufdz36chqk/spack-build-bqtg5qz
        Start  48: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start  53: external_ringtest::coreneuron_gpu_mpi_offline::preparation
        Start  60: testcorenrn_bbcore::coreneuron_gpu_offline::preparation
        Start  64: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
        Start  70: testcorenrn_deriv::coreneuron_gpu_offline::preparation
        Start  74: testcorenrn_deriv::coreneuron_cpu_offline::preparation
        Start  80: testcorenrn_gf::coreneuron_gpu_offline::preparation
        Start  84: testcorenrn_gf::coreneuron_cpu_offline::preparation
        Start  89: testcorenrn_patstim::coreneuron_gpu_offline::preparation
        Start  92: testcorenrn_patstim::coreneuron_cpu_offline::preparation
        Start  43: external_ringtest::neuron
  1/145 Test  #60: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............   Passed    1.98 sec
        Start  56: testcorenrn_bbcore::neuron
  2/145 Test  #64: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............   Passed    2.25 sec
        Start  57: testcorenrn_bbcore::coreneuron_gpu_online
  3/145 Test  #89: testcorenrn_patstim::coreneuron_gpu_offline::preparation ...........   Passed    2.96 sec
        Start  58: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate
  4/145 Test  #70: testcorenrn_deriv::coreneuron_gpu_offline::preparation .............   Passed    3.01 sec
        Start  59: testcorenrn_bbcore::coreneuron_gpu_offline
  5/145 Test  #74: testcorenrn_deriv::coreneuron_cpu_offline::preparation .............   Passed    3.31 sec
        Start  61: testcorenrn_bbcore::coreneuron_cpu_online
  6/145 Test  #43: external_ringtest::neuron ..........................................   Passed    3.63 sec
        Start  62: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
  7/145 Test  #80: testcorenrn_gf::coreneuron_gpu_offline::preparation ................   Passed    3.74 sec
        Start  98: testcorenrn_vecplay::coreneuron_gpu_offline::preparation
  8/145 Test  #84: testcorenrn_gf::coreneuron_cpu_offline::preparation ................   Passed    3.84 sec
        Start 102: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
  9/145 Test  #92: testcorenrn_patstim::coreneuron_cpu_offline::preparation ...........   Passed    4.05 sec
        Start 118: testcorenrn_watch::coreneuron_gpu_offline::preparation
 10/145 Test  #56: testcorenrn_bbcore::neuron .........................................   Passed    2.56 sec
        Start  63: testcorenrn_bbcore::coreneuron_cpu_offline
 11/145 Test #118: testcorenrn_watch::coreneuron_gpu_offline::preparation .............   Passed    3.77 sec
        Start 122: testcorenrn_watch::coreneuron_cpu_offline::preparation
 12/145 Test  #98: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ...........   Passed    4.51 sec
        Start  44: external_ringtest::neuron_mpi
 13/145 Test #102: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ...........   Passed    4.56 sec
        Start  45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 14/145 Test #122: testcorenrn_watch::coreneuron_cpu_offline::preparation .............   Passed    1.59 sec
        Start  46: external_ringtest::coreneuron_cpu_mpi
 15/145 Test  #62: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........   Passed    7.71 sec
        Start  66: testcorenrn_deriv::neuron
 16/145 Test  #61: testcorenrn_bbcore::coreneuron_cpu_online ..........................   Passed    9.21 sec
        Start  67: testcorenrn_deriv::coreneuron_gpu_online
 17/145 Test  #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation .........   Passed   13.01 sec
        Start  47: external_ringtest::coreneuron_cpu_mpi_offline
 18/145 Test  #66: testcorenrn_deriv::neuron ..........................................   Passed    1.84 sec
        Start  68: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate
 19/145 Test  #63: testcorenrn_bbcore::coreneuron_cpu_offline .........................   Passed    8.84 sec
        Start  69: testcorenrn_deriv::coreneuron_gpu_offline
 20/145 Test  #53: external_ringtest::coreneuron_gpu_mpi_offline::preparation .........   Passed   15.54 sec
        Start  50: external_ringtest::coreneuron_gpu_mpi_offline_saverestore
 21/145 Test  #44: external_ringtest::neuron_mpi ......................................   Passed    7.34 sec
        Start  51: external_ringtest::coreneuron_gpu_mpi
 22/145 Test  #59: testcorenrn_bbcore::coreneuron_gpu_offline .........................   Passed   12.78 sec
        Start  71: testcorenrn_deriv::coreneuron_cpu_online
 23/145 Test  #57: testcorenrn_bbcore::coreneuron_gpu_online ..........................   Passed   14.06 sec
        Start  72: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 24/145 Test  #58: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate .........   Passed   13.47 sec
        Start  73: testcorenrn_deriv::coreneuron_cpu_offline
 25/145 Test  #73: testcorenrn_deriv::coreneuron_cpu_offline ..........................   Passed    5.94 sec
        Start  87: testcorenrn_patstim::coreneuron_gpu_offline_saverestore
 26/145 Test  #67: testcorenrn_deriv::coreneuron_gpu_online ...........................   Passed   13.84 sec
        Start  88: testcorenrn_patstim::coreneuron_gpu_offline
 27/145 Test  #69: testcorenrn_deriv::coreneuron_gpu_offline ..........................   Passed   13.05 sec
        Start 127: channel_benchmark_hippo::neuron
 28/145 Test  #47: external_ringtest::coreneuron_cpu_mpi_offline ......................   Passed   13.54 sec
        Start  52: external_ringtest::coreneuron_gpu_mpi_offline
 29/145 Test  #68: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate ..........   Passed   13.34 sec
        Start 128: channel_benchmark_hippo::coreneuron_gpu_online
 30/145 Test  #46: external_ringtest::coreneuron_cpu_mpi ..............................   Passed   17.12 sec
        Start  76: testcorenrn_gf::neuron
 31/145 Test  #71: testcorenrn_deriv::coreneuron_cpu_online ...........................   Passed   12.15 sec
        Start 129: channel_benchmark_hippo::coreneuron_gpu_filemode
 32/145 Test  #76: testcorenrn_gf::neuron .............................................   Passed    4.04 sec
        Start  77: testcorenrn_gf::coreneuron_gpu_online
 33/145 Test  #72: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........   Passed   15.28 sec
        Start 130: channel_benchmark_hippo::coreneuron_cpu_online
 34/145 Test  #51: external_ringtest::coreneuron_gpu_mpi ..............................   Passed   42.55 sec
        Start  78: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate
 35/145 Test  #88: testcorenrn_patstim::coreneuron_gpu_offline ........................   Passed   34.71 sec
        Start 131: channel_benchmark_hippo::coreneuron_cpu_filemode
 36/145 Test  #87: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............   Passed   53.31 sec
        Start 133: channel_benchmark_sscx::neuron
 37/145 Test  #77: testcorenrn_gf::coreneuron_gpu_online ..............................   Passed   53.53 sec
        Start  79: testcorenrn_gf::coreneuron_gpu_offline
 38/145 Test  #52: external_ringtest::coreneuron_gpu_mpi_offline ......................   Passed   69.75 sec
        Start  81: testcorenrn_gf::coreneuron_cpu_online
 39/145 Test  #45: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ..........   Passed  105.86 sec
        Start  82: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 40/145 Test  #78: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate .............   Passed   73.75 sec
        Start  83: testcorenrn_gf::coreneuron_cpu_offline
 41/145 Test  #81: testcorenrn_gf::coreneuron_cpu_online ..............................   Passed   38.32 sec
        Start  86: testcorenrn_patstim::neuron
 42/145 Test  #79: testcorenrn_gf::coreneuron_gpu_offline .............................   Passed   53.42 sec
        Start  90: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 43/145 Test  #86: testcorenrn_patstim::neuron ........................................   Passed    3.57 sec
        Start  91: testcorenrn_patstim::coreneuron_cpu_offline
 44/145 Test  #50: external_ringtest::coreneuron_gpu_mpi_offline_saverestore ..........   Passed  127.85 sec
        Start  94: testcorenrn_vecplay::neuron
 45/145 Test  #94: testcorenrn_vecplay::neuron ........................................   Passed    3.14 sec
        Start  95: testcorenrn_vecplay::coreneuron_gpu_online
 46/145 Test #127: channel_benchmark_hippo::neuron ....................................   Passed  128.42 sec
        Start 134: channel_benchmark_sscx::coreneuron_gpu_online
 47/145 Test  #82: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate .............   Passed   42.25 sec
        Start  96: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate
 48/145 Test  #83: testcorenrn_gf::coreneuron_cpu_offline .............................   Passed   42.03 sec
        Start  97: testcorenrn_vecplay::coreneuron_gpu_offline
 49/145 Test  #91: testcorenrn_patstim::coreneuron_cpu_offline ........................   Passed   37.66 sec
        Start  99: testcorenrn_vecplay::coreneuron_cpu_online
 50/145 Test #128: channel_benchmark_hippo::coreneuron_gpu_online .....................   Passed  151.93 sec
        Start 135: channel_benchmark_sscx::coreneuron_gpu_filemode
 51/145 Test #129: channel_benchmark_hippo::coreneuron_gpu_filemode ...................   Passed  158.58 sec
        Start 136: channel_benchmark_sscx::coreneuron_cpu_online
 52/145 Test #133: channel_benchmark_sscx::neuron .....................................   Passed  111.60 sec
        Start 137: channel_benchmark_sscx::coreneuron_cpu_filemode
 53/145 Test #130: channel_benchmark_hippo::coreneuron_cpu_online .....................   Passed  158.60 sec
        Start   1: testneuron
 54/145 Test   #1: testneuron .........................................................   Passed    0.06 sec
        Start   2: ringtest
 55/145 Test   #2: ringtest ...........................................................   Passed    0.24 sec
        Start   3: connect_dend
 56/145 Test   #3: connect_dend .......................................................   Passed    0.14 sec
        Start   4: pynrn_tests::basic_tests
 57/145 Test   #4: pynrn_tests::basic_tests ...........................................   Passed    4.29 sec
        Start   5: parallel_tests
 58/145 Test  #95: testcorenrn_vecplay::coreneuron_gpu_online .........................   Passed   55.37 sec
        Start 100: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 59/145 Test  #90: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............   Passed   66.49 sec
        Start 101: testcorenrn_vecplay::coreneuron_cpu_offline
 60/145 Test   #5: parallel_tests .....................................................   Passed   13.23 sec
        Start   6: parallel_partrans
 61/145 Test #131: channel_benchmark_hippo::coreneuron_cpu_filemode ...................   Passed  149.29 sec
        Start   7: parallel_netpar
 62/145 Test  #99: testcorenrn_vecplay::coreneuron_cpu_online .........................   Passed   36.91 sec
        Start 114: testcorenrn_watch::neuron
 63/145 Test   #6: parallel_partrans ..................................................   Passed    8.01 sec
        Start   8: parallel_bas
 64/145 Test #114: testcorenrn_watch::neuron ..........................................   Passed    4.04 sec
        Start 115: testcorenrn_watch::coreneuron_gpu_online
 65/145 Test   #7: parallel_netpar ....................................................   Passed    7.55 sec
        Start   9: coreneuron_modtests::fornetcon_py_cpu
 66/145 Test #101: testcorenrn_vecplay::coreneuron_cpu_offline ........................   Passed   24.81 sec
        Start 116: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate
 67/145 Test  #97: testcorenrn_vecplay::coreneuron_gpu_offline ........................   Passed   55.30 sec
        Start 117: testcorenrn_watch::coreneuron_gpu_offline
 68/145 Test   #8: parallel_bas .......................................................   Passed   19.57 sec
        Start  10: coreneuron_modtests::direct_py_cpu
 69/145 Test #100: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........   Passed   41.81 sec
        Start 119: testcorenrn_watch::coreneuron_cpu_online
 70/145 Test  #96: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........   Passed   87.25 sec
        Start 120: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 71/145 Test   #9: coreneuron_modtests::fornetcon_py_cpu ..............................   Passed   26.36 sec
        Start  11: coreneuron_modtests::direct_hoc_cpu
 72/145 Test #115: testcorenrn_watch::coreneuron_gpu_online ...........................   Passed   43.11 sec
        Start 121: testcorenrn_watch::coreneuron_cpu_offline
 73/145 Test  #10: coreneuron_modtests::direct_py_cpu .................................   Passed   29.08 sec
        Start  12: coreneuron_modtests::spikes_py_cpu
 74/145 Test #117: testcorenrn_watch::coreneuron_gpu_offline ..........................   Passed   38.42 sec
        Start 124: testcorenrn_netstimdirect::direct_netstimdirect
 75/145 Test  #11: coreneuron_modtests::direct_hoc_cpu ................................   Passed   27.04 sec
        Start  13: coreneuron_modtests::spikes_file_mode_py_cpu
 76/145 Test #119: testcorenrn_watch::coreneuron_cpu_online ...........................   Passed   31.80 sec
        Start 125: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 77/145 Test #134: channel_benchmark_sscx::coreneuron_gpu_online ......................   Passed  120.82 sec
        Start  14: coreneuron_modtests::fast_imem_py_cpu
 78/145 Test  #14: coreneuron_modtests::fast_imem_py_cpu ..............................   Passed    0.48 sec
        Start  15: coreneuron_modtests::datareturn_py_cpu
 79/145 Test #116: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate ..........   Passed   47.77 sec
        Start  16: coreneuron_modtests::test_units_py_cpu
        Start  17: coreneuron_modtests::test_netmove_py_cpu
 80/145 Test #120: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ..........   Passed   32.95 sec
        Start  18: coreneuron_modtests::test_watchrange_py_cpu
        Start  19: coreneuron_modtests::test_psolve_py_cpu
 81/145 Test #121: testcorenrn_watch::coreneuron_cpu_offline ..........................   Passed   19.71 sec
        Start  20: coreneuron_modtests::test_natrans_py_cpu
        Start  24: coreneuron_modtests::direct_py_gpu
 82/145 Test  #12: coreneuron_modtests::spikes_py_cpu .................................   Passed   15.56 sec
        Start  25: coreneuron_modtests::direct_hoc_gpu
 83/145 Test #124: testcorenrn_netstimdirect::direct_netstimdirect ....................   Passed   16.21 sec
        Start  21: coreneuron_modtests::spikes_mpi_py_cpu
 84/145 Test  #13: coreneuron_modtests::spikes_file_mode_py_cpu .......................   Passed   16.47 sec
        Start  26: coreneuron_modtests::spikes_py_gpu
 85/145 Test #135: channel_benchmark_sscx::coreneuron_gpu_filemode ....................   Passed  110.47 sec
        Start  27: coreneuron_modtests::spikes_file_mode_py_gpu
 86/145 Test #136: channel_benchmark_sscx::coreneuron_cpu_online ......................   Passed  103.79 sec
        Start  28: coreneuron_modtests::fast_imem_py_gpu
 87/145 Test #137: channel_benchmark_sscx::coreneuron_cpu_filemode ....................   Passed  103.20 sec
        Start  29: coreneuron_modtests::datareturn_py_gpu
 88/145 Test  #16: coreneuron_modtests::test_units_py_cpu .............................   Passed   15.17 sec
        Start  30: coreneuron_modtests::test_units_py_gpu
 89/145 Test  #28: coreneuron_modtests::fast_imem_py_gpu ..............................   Passed    1.84 sec
        Start  31: coreneuron_modtests::test_netmove_py_gpu
 90/145 Test  #15: coreneuron_modtests::datareturn_py_cpu .............................   Passed   16.20 sec
        Start  32: coreneuron_modtests::test_watchrange_py_gpu
 91/145 Test  #19: coreneuron_modtests::test_psolve_py_cpu ............................   Passed   16.62 sec
        Start  33: coreneuron_modtests::test_psolve_py_gpu
 92/145 Test  #18: coreneuron_modtests::test_watchrange_py_cpu ........................   Passed   16.85 sec
        Start  34: coreneuron_modtests::test_natrans_py_gpu
 93/145 Test  #17: coreneuron_modtests::test_netmove_py_cpu ...........................   Passed   17.16 sec
        Start  38: external_nrntest
 94/145 Test  #20: coreneuron_modtests::test_natrans_py_cpu ...........................   Passed   14.41 sec
        Start  65: testcorenrn_bbcore::compare_results
 95/145 Test  #65: testcorenrn_bbcore::compare_results ................................   Passed    0.08 sec
        Start  75: testcorenrn_deriv::compare_results
 96/145 Test  #75: testcorenrn_deriv::compare_results .................................   Passed    0.07 sec
        Start  85: testcorenrn_gf::compare_results
 97/145 Test  #85: testcorenrn_gf::compare_results ....................................   Passed    0.11 sec
        Start  93: testcorenrn_patstim::compare_results
 98/145 Test  #25: coreneuron_modtests::direct_hoc_gpu ................................   Passed   13.86 sec
        Start 103: testcorenrn_vecplay::compare_results
 99/145 Test #125: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ...   Passed   18.81 sec
        Start  22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
100/145 Test  #24: coreneuron_modtests::direct_py_gpu .................................   Passed   14.81 sec
        Start 123: testcorenrn_watch::compare_results
101/145 Test #103: testcorenrn_vecplay::compare_results ...............................   Passed    0.15 sec
        Start 126: testcorenrn_netstimdirect::compare_results
102/145 Test  #93: testcorenrn_patstim::compare_results ...............................   Passed    0.21 sec
        Start 132: channel_benchmark_hippo::compare_results
103/145 Test #123: testcorenrn_watch::compare_results .................................   Passed    0.12 sec
        Start 138: channel_benchmark_sscx::compare_results
104/145 Test #126: testcorenrn_netstimdirect::compare_results .........................   Passed    0.13 sec
105/145 Test #132: channel_benchmark_hippo::compare_results ...........................   Passed    0.09 sec
        Start  23: coreneuron_modtests::inputpresyn_py_cpu
106/145 Test #138: channel_benchmark_sscx::compare_results ............................   Passed    0.10 sec
107/145 Test  #21: coreneuron_modtests::spikes_mpi_py_cpu .............................   Passed   12.08 sec
        Start  35: coreneuron_modtests::spikes_mpi_py_gpu
108/145 Test  #30: coreneuron_modtests::test_units_py_gpu .............................   Passed    6.41 sec
        Start  36: coreneuron_modtests::spikes_mpi_file_mode_py_gpu
109/145 Test  #34: coreneuron_modtests::test_natrans_py_gpu ...........................   Passed    5.85 sec
110/145 Test  #33: coreneuron_modtests::test_psolve_py_gpu ............................   Passed    6.40 sec
        Start  37: coreneuron_modtests::inputpresyn_py_gpu
111/145 Test  #27: coreneuron_modtests::spikes_file_mode_py_gpu .......................   Passed   10.86 sec
112/145 Test  #32: coreneuron_modtests::test_watchrange_py_gpu ........................   Passed    7.55 sec
113/145 Test  #26: coreneuron_modtests::spikes_py_gpu .................................   Passed   12.28 sec
114/145 Test  #31: coreneuron_modtests::test_netmove_py_gpu ...........................   Passed    8.84 sec
        Start 108: testcorenrn_vecevent::coreneuron_gpu_offline::preparation
115/145 Test  #29: coreneuron_modtests::datareturn_py_gpu .............................   Passed   10.54 sec
116/145 Test  #22: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ...................   Passed    7.92 sec
117/145 Test #108: testcorenrn_vecevent::coreneuron_gpu_offline::preparation ..........   Passed    1.86 sec
        Start 112: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
118/145 Test  #23: coreneuron_modtests::inputpresyn_py_cpu ............................   Passed   10.14 sec
        Start 140: olfactory-bulb-3d::neuron::preparation
119/145 Test #140: olfactory-bulb-3d::neuron::preparation .............................   Passed    0.02 sec
        Start 142: olfactory-bulb-3d::coreneuron_gpu_online::preparation
120/145 Test #142: olfactory-bulb-3d::coreneuron_gpu_online::preparation ..............   Passed    0.01 sec
        Start 144: olfactory-bulb-3d::coreneuron_cpu_online::preparation
121/145 Test #144: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............   Passed    0.01 sec
        Start  39: reduced_dentate::neuron
122/145 Test #112: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ..........   Passed    2.63 sec
        Start  40: reduced_dentate::coreneuron_cpu
123/145 Test  #37: coreneuron_modtests::inputpresyn_py_gpu ............................   Passed    5.90 sec
124/145 Test  #36: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ...................   Passed    8.47 sec
        Start  41: reduced_dentate::coreneuron_gpu
125/145 Test  #35: coreneuron_modtests::spikes_mpi_py_gpu .............................   Passed   10.91 sec
126/145 Test  #39: reduced_dentate::neuron ............................................   Passed   22.15 sec
        Start  49: external_ringtest::coreneuron_cpu_mpi_threads
127/145 Test  #49: external_ringtest::coreneuron_cpu_mpi_threads ......................   Passed   21.38 sec
        Start  54: external_ringtest::coreneuron_gpu_mpi_threads
128/145 Test  #40: reduced_dentate::coreneuron_cpu ....................................   Passed   43.69 sec
        Start 104: testcorenrn_vecevent::neuron
129/145 Test  #41: reduced_dentate::coreneuron_gpu ....................................   Passed   43.25 sec
        Start 105: testcorenrn_vecevent::coreneuron_gpu_online
        Start  42: reduced_dentate::compare_results
130/145 Test  #42: reduced_dentate::compare_results ...................................   Passed    0.28 sec
131/145 Test #104: testcorenrn_vecevent::neuron .......................................   Passed    3.75 sec
        Start 106: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate
132/145 Test #105: testcorenrn_vecevent::coreneuron_gpu_online ........................   Passed   13.55 sec
        Start 107: testcorenrn_vecevent::coreneuron_gpu_offline
133/145 Test #107: testcorenrn_vecevent::coreneuron_gpu_offline .......................   Passed   18.64 sec
        Start 109: testcorenrn_vecevent::coreneuron_cpu_online
134/145 Test #106: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate .......   Passed   35.12 sec
        Start 110: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
135/145 Test  #54: external_ringtest::coreneuron_gpu_mpi_threads ......................   Passed   39.93 sec
        Start 111: testcorenrn_vecevent::coreneuron_cpu_offline
        Start  55: external_ringtest::compare_results
136/145 Test  #55: external_ringtest::compare_results .................................   Passed    0.07 sec
137/145 Test #109: testcorenrn_vecevent::coreneuron_cpu_online ........................   Passed    7.54 sec
        Start 139: olfactory-bulb-3d::neuron
138/145 Test  #38: external_nrntest ...................................................   Passed  118.95 sec
        Start 141: olfactory-bulb-3d::coreneuron_gpu_online
139/145 Test #111: testcorenrn_vecevent::coreneuron_cpu_offline .......................   Passed   32.07 sec
        Start 143: olfactory-bulb-3d::coreneuron_cpu_online
140/145 Test #110: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .......   Passed   50.99 sec
        Start 113: testcorenrn_vecevent::compare_results
141/145 Test #113: testcorenrn_vecevent::compare_results ..............................   Passed    0.06 sec
142/145 Test #139: olfactory-bulb-3d::neuron ..........................................   Passed  137.74 sec
143/145 Test #141: olfactory-bulb-3d::coreneuron_gpu_online ...........................   Passed  163.40 sec
144/145 Test #143: olfactory-bulb-3d::coreneuron_cpu_online ...........................   Passed  157.42 sec
        Start 145: olfactory-bulb-3d::compare_results
145/145 Test #145: olfactory-bulb-3d::compare_results .................................   Passed    0.29 sec

100% tests passed, 0 tests failed out of 145

Total Test time (real) = 578.09 sec
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
[32;1m$ module load unstable unit-test-translator[0;m
Autoloading python/3.9.7
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
[32;1m$ exit ${i_am_a_failure}[0;m
section_end:1645793287:step_script
[0Ksection_start:1645793287:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=45237 revision[0;m=58ba2b95 version[0;m=14.2.0
initial_environment.env: found 1 matching files and directories[0;m
Testing/: found 7 matching files and directories  [0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=168577 responseStatus[0;m=201 Created token[0;m=GyiTusKT
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=45304 revision[0;m=58ba2b95 version[0;m=14.2.0
ctest.xml: found 1 matching files and directories [0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=168577 responseStatus[0;m=201 Created token[0;m=GyiTusKT
section_end:1645793288:upload_artifacts_on_success
[0Ksection_start:1645793288:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1645793289:cleanup_file_variables
[0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1645790004:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1645790004:resolve_secrets [0Ksection_start:1645790004:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor700125446, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168574
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J168574_PROD_P112_CP4_C6
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	chown: changing ownership of â/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210/J168559/spack-build/spack-stage-coreneuron-develop-eu4hpbxhafq7qnk2fui2odphdvhionsa/spack-build-eu4hpbx/nrn_checkpoint.tsmâ: No such file or directory
	[31;1mERROR: Preparation failed: exit status 2[0;m
	[32;1mWill be retried in 3s ...[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor218447719, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168574
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J168574_PROD_P112_CP4_C6
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl\|clx]
	Submitted batch job 299531
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: PD
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J168574_PROD_P112_CP4_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299531 --cpus-per-task=1 --mem=30750M
	section_end:1645790139:prepare_executor [0Ksection_start:1645790139:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on r1i4n18 via bbpv1.epfl.ch...
	section_end:1645790142:prepare_script [0Ksection_start:1645790142:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1645790143:get_sources [0Ksection_start:1645790143:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:mod2c:intel (168563)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=247883 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=168563 responseStatus[0;m=200 OK token[0;m=d_UusMB3
	section_end:1645790144:download_artifacts [0Ksection_start:1645790144:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i4n18
	Build name: Linux-icpc
	Create new tag: 20220225-1156 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168563/spack-build/spack-stage-coreneuron-develop-m3wj6qrskw2me6loonsphskpme3zo3yx/spack-build-m3wj6qr
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 17: reporting_1
	1/17 Test #2: interleave_info_constructor_test ... Passed 3.97 sec
	2/17 Test #3: alignment_test ..................... Passed 4.10 sec
	Start 7: ring_binqueue_TEST
	3/17 Test #6: ring_TEST .......................... Passed 4.19 sec
	Start 8: ring_multisend_TEST
	4/17 Test #17: reporting_1 ........................ Passed 4.19 sec
	5/17 Test #1: cmd_interface_test ................. Passed 4.27 sec
	Start 9: ring_spike_buffer_TEST
	6/17 Test #4: queuing_test ....................... Passed 4.32 sec
	7/17 Test #5: lfp_test ........................... Passed 4.42 sec
	Start 10: ring_permute1_TEST
	8/17 Test #7: ring_binqueue_TEST ................. Passed 3.74 sec
	Start 11: ring_permute2_TEST
	9/17 Test #10: ring_permute1_TEST ................. Passed 4.10 sec
	Start 12: ring_gap_TEST
	10/17 Test #9: ring_spike_buffer_TEST ............. Passed 4.33 sec
	Start 13: ring_gap_binqueue_TEST
	11/17 Test #8: ring_multisend_TEST ................ Passed 4.41 sec
	Start 14: ring_gap_multisend_TEST
	12/17 Test #11: ring_permute2_TEST ................. Passed 2.08 sec
	Start 15: ring_gap_permute1_TEST
	13/17 Test #12: ring_gap_TEST ...................... Passed 4.21 sec
	Start 16: ring_gap_permute2_TEST
	14/17 Test #14: ring_gap_multisend_TEST ............ Passed 4.64 sec
	15/17 Test #13: ring_gap_binqueue_TEST ............. Passed 4.89 sec
	16/17 Test #15: ring_gap_permute1_TEST ............. Passed 3.57 sec
	17/17 Test #16: ring_gap_permute2_TEST ............. Passed 1.75 sec

	100% tests passed, 0 tests failed out of 17

	Total Test time (real) = 14.64 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.9.7
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1645790211:step_script [0Ksection_start:1645790211:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=250217 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=168574 responseStatus[0;m=201 Created token[0;m=6UVfwA6k
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=250252 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=168574 responseStatus[0;m=201 Created token[0;m=6UVfwA6k
	section_end:1645790212:upload_artifacts_on_success [0Ksection_start:1645790212:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1645790213:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1645790462:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1645790462:resolve_secrets [0Ksection_start:1645790462:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor243433383, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168571
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J168571_PROD_P112_CP3_C4
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	Submitted batch job 299549
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J168571_PROD_P112_CP3_C4 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299549 --cpus-per-task=1 --mem=30750M
	section_end:1645790485:prepare_executor [0Ksection_start:1645790485:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
	section_end:1645790485:prepare_script [0Ksection_start:1645790485:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1645790486:get_sources [0Ksection_start:1645790486:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc:unified (168560)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8807 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=168560 responseStatus[0;m=200 OK token[0;m=qtPM8ALk
	section_end:1645790487:download_artifacts [0Ksection_start:1645790487:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i4n18
	Build name: Linux-nvc++
	Create new tag: 20220225-1201 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168560/spack-build/spack-stage-coreneuron-develop-yazrst2oenpi6vjys22z2msqlominpwp/spack-build-yazrst2
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 19: reporting_1
	1/19 Test #1: cmd_interface_test ..................... Passed 2.69 sec
	2/19 Test #5: lfp_test ............................... Passed 3.38 sec
	Start 7: ring_binqueue_TEST
	3/19 Test #4: queuing_test ........................... Passed 3.39 sec
	4/19 Test #19: reporting_1 ............................ Passed 10.62 sec
	Start 8: ring_multisend_TEST
	5/19 Test #2: interleave_info_constructor_test ....... Passed 10.81 sec
	6/19 Test #3: alignment_test ......................... Passed 10.94 sec
	Start 9: ring_spike_buffer_TEST
	7/19 Test #7: ring_binqueue_TEST ..................... Passed 12.81 sec
	Start 10: ring_permute1_TEST
	8/19 Test #6: ring_TEST .............................. Passed 16.29 sec
	Start 11: ring_permute2_TEST
	9/19 Test #9: ring_spike_buffer_TEST ................. Passed 11.22 sec
	Start 12: ring_gap_TEST
	10/19 Test #8: ring_multisend_TEST .................... Passed 11.62 sec
	Start 13: ring_gap_binqueue_TEST
	11/19 Test #10: ring_permute1_TEST ..................... Passed 11.45 sec
	Start 14: ring_gap_multisend_TEST
	12/19 Test #11: ring_permute2_TEST ..................... Passed 11.46 sec
	Start 15: ring_gap_permute1_TEST
	13/19 Test #12: ring_gap_TEST .......................... Passed 244.35 sec
	Start 16: ring_gap_permute2_TEST
	14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 244.55 sec
	Start 17: ring_permute2_cudaInterface_TEST
	15/19 Test #15: ring_gap_permute1_TEST ................. Passed 243.03 sec
	Start 18: ring_gap_permute2_cudaInterface_TEST
	16/19 Test #14: ring_gap_multisend_TEST ................ Passed 243.35 sec
	17/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 22.19 sec
	18/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 38.19 sec
	19/19 Test #16: ring_gap_permute2_TEST ................. Passed 42.88 sec

	100% tests passed, 0 tests failed out of 19

	Total Test time (real) = 309.42 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.9.7
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1645790823:step_script [0Ksection_start:1645790823:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=13406 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=168571 responseStatus[0;m=201 Created token[0;m=UdushyK3
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=13437 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=168571 responseStatus[0;m=201 Created token[0;m=UdushyK3
	section_end:1645790824:upload_artifacts_on_success [0Ksection_start:1645790824:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1645790826:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1645790141:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1645790141:resolve_secrets [0Ksection_start:1645790141:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor113264121, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168570
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J168570_PROD_P112_CP5_C7
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	Submitted batch job 299534
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J168570_PROD_P112_CP5_C7 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299534 --cpus-per-task=1 --mem=30750M
	section_end:1645790154:prepare_executor [0Ksection_start:1645790154:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
	section_end:1645790155:prepare_script [0Ksection_start:1645790155:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1645790156:get_sources [0Ksection_start:1645790156:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (168559)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=5628 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=168559 responseStatus[0;m=200 OK token[0;m=ZsSdMeXU
	section_end:1645790157:download_artifacts [0Ksection_start:1645790157:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i4n18
	Build name: Linux-nvc++
	Create new tag: 20220225-1156 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168559/spack-build/spack-stage-coreneuron-develop-eu4hpbxhafq7qnk2fui2odphdvhionsa/spack-build-eu4hpbx
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 19: reporting_1
	1/19 Test #1: cmd_interface_test ..................... Passed 1.81 sec
	2/19 Test #3: alignment_test ......................... Passed 2.02 sec
	Start 7: ring_binqueue_TEST
	3/19 Test #2: interleave_info_constructor_test ....... Passed 3.25 sec
	4/19 Test #4: queuing_test ........................... Passed 3.26 sec
	Start 8: ring_multisend_TEST
	5/19 Test #5: lfp_test ............................... Passed 3.90 sec
	6/19 Test #19: reporting_1 ............................ Passed 10.23 sec
	Start 9: ring_spike_buffer_TEST
	7/19 Test #7: ring_binqueue_TEST ..................... Passed 12.21 sec
	Start 10: ring_permute1_TEST
	8/19 Test #6: ring_TEST .............................. Passed 14.27 sec
	Start 11: ring_permute2_TEST
	9/19 Test #8: ring_multisend_TEST .................... Passed 11.09 sec
	Start 12: ring_gap_TEST
	10/19 Test #9: ring_spike_buffer_TEST ................. Passed 9.07 sec
	Start 13: ring_gap_binqueue_TEST
	11/19 Test #10: ring_permute1_TEST ..................... Passed 9.73 sec
	Start 14: ring_gap_multisend_TEST
	12/19 Test #11: ring_permute2_TEST ..................... Passed 10.22 sec
	Start 15: ring_gap_permute1_TEST
	13/19 Test #12: ring_gap_TEST .......................... Passed 10.24 sec
	Start 16: ring_gap_permute2_TEST
	14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 9.29 sec
	Start 17: ring_permute2_cudaInterface_TEST
	15/19 Test #14: ring_gap_multisend_TEST ................ Passed 6.76 sec
	Start 18: ring_gap_permute2_cudaInterface_TEST
	16/19 Test #16: ring_gap_permute2_TEST ................. Passed 13.48 sec
	17/19 Test #15: ring_gap_permute1_TEST ................. Passed 13.62 sec
	18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 9.64 sec
	19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 9.67 sec

	100% tests passed, 0 tests failed out of 19

	Total Test time (real) = 40.42 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.9.7
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1645790223:step_script [0Ksection_start:1645790223:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7696 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=168570 responseStatus[0;m=201 Created token[0;m=DJ3AVyiu
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=7726 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=168570 responseStatus[0;m=201 Created token[0;m=DJ3AVyiu
	section_end:1645790224:upload_artifacts_on_success [0Ksection_start:1645790224:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1645790225:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1645790822:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1645790822:resolve_secrets [0Ksection_start:1645790822:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor507242356, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168575
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J168575_PROD_P112_CP7_C9
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl\|clx]
	Submitted batch job 299605
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J168575_PROD_P112_CP7_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299605 --cpus-per-task=1 --mem=30750M
	section_end:1645790841:prepare_executor [0Ksection_start:1645790841:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on r1i4n18 via bbpv1.epfl.ch...
	section_end:1645790844:prepare_script [0Ksection_start:1645790844:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1645790845:get_sources [0Ksection_start:1645790845:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:nmodl:intel (168564)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=266786 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=168564 responseStatus[0;m=200 OK token[0;m=kDERLrn4
	section_end:1645790848:download_artifacts [0Ksection_start:1645790848:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i4n17
	Build name: Linux-icpc
	Create new tag: 20220225-1207 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168564/spack-build/spack-stage-coreneuron-develop-hjoctunjmyugp3uctz2hvc3l7iujnh2j/spack-build-hjoctun
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 17: reporting_1
	1/17 Test #6: ring_TEST .......................... Passed 2.54 sec
	Start 7: ring_binqueue_TEST
	2/17 Test #17: reporting_1 ........................ Passed 2.57 sec
	3/17 Test #1: cmd_interface_test ................. Passed 2.77 sec
	Start 8: ring_multisend_TEST
	4/17 Test #2: interleave_info_constructor_test ... Passed 3.04 sec
	5/17 Test #3: alignment_test ..................... Passed 3.05 sec
	Start 9: ring_spike_buffer_TEST
	6/17 Test #4: queuing_test ....................... Passed 3.21 sec
	7/17 Test #5: lfp_test ........................... Passed 3.39 sec
	Start 10: ring_permute1_TEST
	8/17 Test #7: ring_binqueue_TEST ................. Passed 2.34 sec
	Start 11: ring_permute2_TEST
	9/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.56 sec
	Start 12: ring_gap_TEST
	10/17 Test #10: ring_permute1_TEST ................. Passed 3.47 sec
	Start 13: ring_gap_binqueue_TEST
	11/17 Test #8: ring_multisend_TEST ................ Passed 4.25 sec
	Start 14: ring_gap_multisend_TEST
	12/17 Test #11: ring_permute2_TEST ................. Passed 2.14 sec
	Start 15: ring_gap_permute1_TEST
	13/17 Test #12: ring_gap_TEST ...................... Passed 0.90 sec
	Start 16: ring_gap_permute2_TEST
	14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 1.99 sec
	15/17 Test #14: ring_gap_multisend_TEST ............ Passed 3.21 sec
	16/17 Test #15: ring_gap_permute1_TEST ............. Passed 3.26 sec
	17/17 Test #16: ring_gap_permute2_TEST ............. Passed 2.85 sec

	100% tests passed, 0 tests failed out of 17

	Total Test time (real) = 10.39 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.9.7
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1645790887:step_script [0Ksection_start:1645790887:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269682 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=168575 responseStatus[0;m=201 Created token[0;m=keTySssx
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269722 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=168575 responseStatus[0;m=201 Created token[0;m=keTySssx
	section_end:1645790888:upload_artifacts_on_success [0Ksection_start:1645790888:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1645790889:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1645791414:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1645791414:resolve_secrets [0Ksection_start:1645791414:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor213416122, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168573
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J168573_PROD_P112_CP4_C3
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	Submitted batch job 299711
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J168573_PROD_P112_CP4_C3 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299711 --cpus-per-task=1 --mem=30750M
	section_end:1645791443:prepare_executor [0Ksection_start:1645791443:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
	section_end:1645791444:prepare_script [0Ksection_start:1645791444:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1645791445:get_sources [0Ksection_start:1645791445:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (168562)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=15423 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=168562 responseStatus[0;m=200 OK token[0;m=M65dgeFY
	section_end:1645791445:download_artifacts [0Ksection_start:1645791445:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i4n17
	Build name: Linux-nvc++
	Create new tag: 20220225-1217 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168562/spack-build/spack-stage-coreneuron-develop-dnxbrduez2m4zqbybmy5gptv7esox5ao/spack-build-dnxbrdu
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 19: reporting_1
	1/19 Test #1: cmd_interface_test ..................... Passed 3.09 sec
	2/19 Test #4: queuing_test ........................... Passed 3.25 sec
	Start 7: ring_binqueue_TEST
	3/19 Test #5: lfp_test ............................... Passed 3.43 sec
	4/19 Test #3: alignment_test ......................... Passed 3.45 sec
	Start 8: ring_multisend_TEST
	5/19 Test #2: interleave_info_constructor_test ....... Passed 3.60 sec
	6/19 Test #19: reporting_1 ............................ Passed 7.74 sec
	Start 9: ring_spike_buffer_TEST
	7/19 Test #6: ring_TEST .............................. Passed 8.82 sec
	Start 10: ring_permute1_TEST
	8/19 Test #7: ring_binqueue_TEST ..................... Passed 9.70 sec
	Start 11: ring_permute2_TEST
	9/19 Test #8: ring_multisend_TEST .................... Passed 9.57 sec
	Start 12: ring_gap_TEST
	10/19 Test #9: ring_spike_buffer_TEST ................. Passed 9.25 sec
	Start 13: ring_gap_binqueue_TEST
	11/19 Test #10: ring_permute1_TEST ..................... Passed 8.29 sec
	Start 14: ring_gap_multisend_TEST
	12/19 Test #11: ring_permute2_TEST ..................... Passed 8.95 sec
	Start 15: ring_gap_permute1_TEST
	13/19 Test #12: ring_gap_TEST .......................... Passed 9.20 sec
	Start 16: ring_gap_permute2_TEST
	14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 36.39 sec
	Start 17: ring_permute2_cudaInterface_TEST
	15/19 Test #14: ring_gap_multisend_TEST ................ Passed 46.16 sec
	Start 18: ring_gap_permute2_cudaInterface_TEST
	16/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 15.54 sec
	17/19 Test #16: ring_gap_permute2_TEST ................. Passed 54.51 sec
	18/19 Test #15: ring_gap_permute1_TEST ................. Passed 61.45 sec
	19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 21.66 sec

	100% tests passed, 0 tests failed out of 19

	Total Test time (real) = 84.95 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.9.7
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1645791558:step_script [0Ksection_start:1645791558:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=17417 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=168573 responseStatus[0;m=201 Created token[0;m=9YtzPoR5
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=17448 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=168573 responseStatus[0;m=201 Created token[0;m=9YtzPoR5
	section_end:1645791559:upload_artifacts_on_success [0Ksection_start:1645791559:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1645791562:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1645790718:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1645790718:resolve_secrets [0Ksection_start:1645790718:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor674726562, slurm job id
	Runner ID 29, project root hpc, project name coreneuron
	Pipeline ID 40210, build ref 36309e551474dbf56e530e7af57992b93165cb75, job ID 168572
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210, optional exclusive flag , optional cpus per task flag --cpus-per-task=1
	A slurm job will be created with name GL_J168572_PROD_P112_CP6_C5
	Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	Submitted batch job 299598
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J168572_PROD_P112_CP6_C5 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P40210 --ntasks=8 --jobid=299598 --cpus-per-task=1 --mem=30750M
	section_end:1645790739:prepare_executor [0Ksection_start:1645790739:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Running on ldir01u05.bbp.epfl.ch via bbpv1.epfl.ch...
	section_end:1645790740:prepare_script [0Ksection_start:1645790740:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1645790741:get_sources [0Ksection_start:1645790741:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	[32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (168561)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=11048 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=168561 responseStatus[0;m=200 OK token[0;m=TaVk_LDt
	section_end:1645790742:download_artifacts [0Ksection_start:1645790742:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i6n19
	Build name: Linux-nvc++
	Create new tag: 20220225-1206 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P40210/J168561/spack-build/spack-stage-coreneuron-develop-4aqrvmukyzi2vgvnx2ytrojgreyutnpx/spack-build-4aqrvmu
	Start 1: cmd_interface_test
	Start 2: interleave_info_constructor_test
	Start 3: alignment_test
	Start 4: queuing_test
	Start 5: lfp_test
	Start 6: ring_TEST
	Start 19: reporting_1
	1/19 Test #19: reporting_1 ............................ Passed 1.44 sec
	2/19 Test #1: cmd_interface_test ..................... Passed 1.55 sec
	Start 7: ring_binqueue_TEST
	3/19 Test #2: interleave_info_constructor_test ....... Passed 1.77 sec
	4/19 Test #3: alignment_test ......................... Passed 1.78 sec
	Start 8: ring_multisend_TEST
	5/19 Test #4: queuing_test ........................... Passed 1.92 sec
	6/19 Test #5: lfp_test ............................... Passed 2.06 sec
	Start 9: ring_spike_buffer_TEST
	7/19 Test #6: ring_TEST .............................. Passed 6.24 sec
	Start 10: ring_permute1_TEST
	8/19 Test #7: ring_binqueue_TEST ..................... Passed 13.43 sec
	Start 11: ring_permute2_TEST
	9/19 Test #9: ring_spike_buffer_TEST ................. Passed 16.02 sec
	Start 12: ring_gap_TEST
	10/19 Test #8: ring_multisend_TEST .................... Passed 16.35 sec
	Start 13: ring_gap_binqueue_TEST
	11/19 Test #10: ring_permute1_TEST ..................... Passed 14.04 sec
	Start 14: ring_gap_multisend_TEST
	12/19 Test #11: ring_permute2_TEST ..................... Passed 11.60 sec
	Start 15: ring_gap_permute1_TEST
	13/19 Test #14: ring_gap_multisend_TEST ................ Passed 114.55 sec
	Start 16: ring_gap_permute2_TEST
	14/19 Test #15: ring_gap_permute1_TEST ................. Passed 227.73 sec
	Start 17: ring_permute2_cudaInterface_TEST
	15/19 Test #12: ring_gap_TEST .......................... Passed 241.23 sec
	Start 18: ring_gap_permute2_cudaInterface_TEST
	16/19 Test #13: ring_gap_binqueue_TEST ................. Passed 241.29 sec
	17/19 Test #16: ring_gap_permute2_TEST ................. Passed 124.89 sec
	18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 6.78 sec
	19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 4.48 sec

	100% tests passed, 0 tests failed out of 19

	Total Test time (real) = 263.83 sec
	[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m
	[32;1m$ module load unstable unit-test-translator[0;m
	Autoloading python/3.9.7
	[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m
	[32;1m$ exit ${i_am_a_failure}[0;m
	section_end:1645791033:step_script [0Ksection_start:1645791033:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14269 revision[0;m=58ba2b95 version[0;m=14.2.0
	initial_environment.env: found 1 matching files and directories[0;m
	Testing/: found 7 matching files and directories [0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=168572 responseStatus[0;m=201 Created token[0;m=VRcoEqrW
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=14299 revision[0;m=58ba2b95 version[0;m=14.2.0
	ctest.xml: found 1 matching files and directories [0;m
	Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=168572 responseStatus[0;m=201 Created token[0;m=VRcoEqrW
	section_end:1645791035:upload_artifacts_on_success [0Ksection_start:1645791035:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	section_end:1645791035:cleanup_file_variables [0K[32;1mJob succeeded[0;m