gistfile1.txt

[ec2-user@ip-10-195-165-187 rpy2]$ sudo pip-2.7 install rpy2
Downloading/unpacking rpy2
  Running setup.py egg_info for package rpy2
    
    
    returned an empty string.
    
    
    returned an empty string.
    
    Configuration for R as a library:
      include_dirs: ('/usr/include/R',)
      libraries: ('R',)
      library_dirs: ('/usr/lib64/R/lib',)
      extra_link_args: ()
     # OSX-specific (included in extra_link_args)
      framework_dirs: ()
      frameworks: ()
    warning: no previously-included files matching '*patch*' found anywhere in distribution
    warning: no previously-included files matching '*diff*' found anywhere in distribution
    warning: no previously-included files matching '.hg' found anywhere in distribution
    no previously-included directories found matching 'dist'
Installing collected packages: rpy2
  Running setup.py install for rpy2
    
    returned an empty string.
    
    
    returned an empty string.
    
    Configuration for R as a library:
      include_dirs: ('/usr/include/R',)
      libraries: ('R',)
      library_dirs: ('/usr/lib64/R/lib',)
      extra_link_args: ()
     # OSX-specific (included in extra_link_args)
      framework_dirs: ()
      frameworks: ()
    building 'rpy2.rinterface._rinterface' extension
    gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/usr/include/python2.7 -I/usr/include/R -c ./rpy/rinterface/_rinterface.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o
    In file included from /usr/include/python2.7/pyconfig.h:6:0,
                     from /usr/include/python2.7/Python.h:8,
                     from ./rpy/rinterface/_rinterface.c:55:
    /usr/include/python2.7/pyconfig-64.h:1170:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]
    /usr/include/features.h:162:0: note: this is the location of the previous definition
    /usr/include/python2.7/pyconfig-64.h:1192:0: warning: "_XOPEN_SOURCE" redefined [enabled by default]
    /usr/include/features.h:164:0: note: this is the location of the previous definition
    In file included from ./rpy/rinterface/_rinterface.c:58:0:
    ./rpy/rinterface/_rinterface.h:8:15: fatal error: R.h: No such file or directory
    compilation terminated.
    error: command 'gcc' failed with exit status 1
    Complete output from command /usr/bin/python2.7 -c "import setuptools;__file__='/tmp/pip-build/rpy2/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-7lN8XQ-record/install-record.txt --single-version-externally-managed:
    running install

running build

running build_py

running build_ext



returned an empty string.





returned an empty string.



Configuration for R as a library:

  include_dirs: ('/usr/include/R',)

  libraries: ('R',)

  library_dirs: ('/usr/lib64/R/lib',)

  extra_link_args: ()

 # OSX-specific (included in extra_link_args)

  framework_dirs: ()

  frameworks: ()

building 'rpy2.rinterface._rinterface' extension

gcc -pthread -fno-strict-aliasing -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -DNDEBUG -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m64 -mtune=generic -D_GNU_SOURCE -fPIC -fwrapv -fPIC -DR_INTERFACE_PTRS=1 -DHAVE_POSIX_SIGJMP=1 -DRIF_HAS_RSIGHAND=1 -DCSTACK_DEFNS=1 -DHAS_READLINE=1 -I./rpy/rinterface -I/usr/include/python2.7 -I/usr/include/R -c ./rpy/rinterface/_rinterface.c -o build/temp.linux-x86_64-2.7/./rpy/rinterface/_rinterface.o

In file included from /usr/include/python2.7/pyconfig.h:6:0,

                 from /usr/include/python2.7/Python.h:8,

                 from ./rpy/rinterface/_rinterface.c:55:

/usr/include/python2.7/pyconfig-64.h:1170:0: warning: "_POSIX_C_SOURCE" redefined [enabled by default]

/usr/include/features.h:162:0: note: this is the location of the previous definition

/usr/include/python2.7/pyconfig-64.h:1192:0: warning: "_XOPEN_SOURCE" redefined [enabled by default]

/usr/include/features.h:164:0: note: this is the location of the previous definition

In file included from ./rpy/rinterface/_rinterface.c:58:0:

./rpy/rinterface/_rinterface.h:8:15: fatal error: R.h: No such file or directory

compilation terminated.

error: command 'gcc' failed with exit status 1

----------------------------------------
Command /usr/bin/python2.7 -c "import setuptools;__file__='/tmp/pip-build/rpy2/setup.py';exec(compile(open(__file__).read().replace('\r\n', '\n'), __file__, 'exec'))" install --record /tmp/pip-7lN8XQ-record/install-record.txt --single-version-externally-managed failed with error code 1 in /tmp/pip-build/rpy2
Storing complete log in /root/.pip/pip.log
[ec2-user@ip-10-195-165-187 rpy2]$ sudo pip-2.7 install rpy2