Created
November 29, 2021 15:46
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/27109 (:no_entry:) running on GitHub PR BlueBrain/CoreNeuron#699.
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197472:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197472:resolve_secrets [0Ksection_start:1638197472:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor547083115, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99606 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99606 | |
| A slurm job will be created with name GL_J99606_PROD_P112_CP4_C5 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94188 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638197485:prepare_executor [0Ksection_start:1638197485:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n19 via bbpv1.epfl.ch... | |
| section_end:1638197487:prepare_script [0Ksection_start:1638197487:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197487:get_sources [0Ksection_start:1638197487:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=158498 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638197512:restore_cache [0Ksection_start:1638197512:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (99600)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=158731 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99600 responseStatus[0;m=200 OK token[0;m=3MyLTc3i | |
| section_end:1638197513:download_artifacts [0Ksection_start:1638197513:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="d86aefa82808e5df00dcbd3c88d9893994c7f531" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..dbfb69d 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="d86aefa82808e5df00dcbd3c88d9893994c7f531") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+gpu+tests~legacy-unit~report build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be d5jp63omt63hmfz46ab5b5um2wtosys4 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99606/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99606/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:52:39 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (92.10 %) | |
| Files: 18760 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'd5jp63omt63hmfz46ab5b5um2wtosys4' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit~report+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - d5jp63o coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| ==> Installing coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4 | |
| ==> No binary for coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4 found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-d5jp63 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99606/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99606/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:54:10 2021 | |
| Hits: 114 / 117 (97.44 %) | |
| Direct: 98 / 117 (83.76 %) | |
| Preprocessed: 16 / 19 (84.21 %) | |
| Misses: 3 | |
| Direct: 19 | |
| Preprocessed: 3 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 227 / 234 (97.01 %) | |
| Misses: 7 | |
| Cache size (GB): 0.47 / 0.51 (92.10 %) | |
| Files: 18755 | |
| Cleanups: 4 | |
| Uncacheable: | |
| Called for linking: 15 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638197651:step_script [0Ksection_start:1638197651:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=163574 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 19316 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638197676:archive_cache [0Ksection_start:1638197676:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=164528 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99606 responseStatus[0;m=201 Created token[0;m=yGMmnvvw | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=164553 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99606 responseStatus[0;m=201 Created token[0;m=yGMmnvvw | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=164576 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99606 responseStatus[0;m=201 Created token[0;m=yGMmnvvw | |
| section_end:1638197677:upload_artifacts_on_success [0Ksection_start:1638197677:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638197678:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197472:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197472:resolve_secrets [0Ksection_start:1638197472:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor764248337, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99604 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99604 | |
| A slurm job will be created with name GL_J99604_PROD_P112_CP3_C4 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94187 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638197485:prepare_executor [0Ksection_start:1638197485:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n20 via bbpv1.epfl.ch... | |
| section_end:1638197487:prepare_script [0Ksection_start:1638197487:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197487:get_sources [0Ksection_start:1638197487:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109696 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638197511:restore_cache [0Ksection_start:1638197511:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (99600)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=110260 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99600 responseStatus[0;m=200 OK token[0;m=3MyLTc3i | |
| section_end:1638197512:download_artifacts [0Ksection_start:1638197512:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99604/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99604/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99604/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99604/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99604/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="d86aefa82808e5df00dcbd3c88d9893994c7f531" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..dbfb69d 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="d86aefa82808e5df00dcbd3c88d9893994c7f531") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be aevgkbdozl3htdtjhrd5w65n3c6mb2jh | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99604/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99604/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:52:39 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.42 / 0.51 (81.46 %) | |
| Files: 13203 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'aevgkbdozl3htdtjhrd5w65n3c6mb2jh' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - aevgkbd coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| ==> Installing coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh | |
| ==> No binary for coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh found: installing from source | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-aevgkb | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99604/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99604/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:53:54 2021 | |
| Hits: 108 / 117 (92.31 %) | |
| Direct: 92 / 118 (77.97 %) | |
| Preprocessed: 16 / 26 (61.54 %) | |
| Misses: 9 | |
| Direct: 26 | |
| Preprocessed: 10 | |
| Uncacheable: 20 | |
| Primary storage: | |
| Hits: 215 / 236 (91.10 %) | |
| Misses: 21 | |
| Cache size (GB): 0.42 / 0.51 (81.48 %) | |
| Files: 13221 | |
| Uncacheable: | |
| Called for linking: 16 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638197635:step_script [0Ksection_start:1638197635:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=115635 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 13782 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638197657:archive_cache [0Ksection_start:1638197657:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=115904 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99604 responseStatus[0;m=201 Created token[0;m=ENV9BvMs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=115926 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99604 responseStatus[0;m=201 Created token[0;m=ENV9BvMs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=115950 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99604 responseStatus[0;m=201 Created token[0;m=ENV9BvMs | |
| section_end:1638197658:upload_artifacts_on_success [0Ksection_start:1638197658:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638197659:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198386:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198386:resolve_secrets [0Ksection_start:1638198386:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor057960951, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99605 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99605 | |
| A slurm job will be created with name GL_J99605_PROD_P112_CP1_C3 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94300 | |
| job state: PD | |
| job state: R | |
| section_end:1638198389:prepare_executor [0Ksection_start:1638198389:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n19 via bbpv1.epfl.ch... | |
| section_end:1638198391:prepare_script [0Ksection_start:1638198391:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198391:get_sources [0Ksection_start:1638198391:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=202653 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638198415:restore_cache [0Ksection_start:1638198415:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl:gpu (99602)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=203168 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99602 responseStatus[0;m=200 OK token[0;m=4jJhKejs | |
| section_end:1638198416:download_artifacts [0Ksection_start:1638198416:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="d86aefa82808e5df00dcbd3c88d9893994c7f531" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..dbfb69d 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="d86aefa82808e5df00dcbd3c88d9893994c7f531") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%nvhpc+nmodl+gpu+tests~legacy-unit~report build_type=RelWithDebInfo ^/nswa6573eazhleffns23ijmh436w7top | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be zlwgeoedcsxjuxmsxmqszgt6asxykrym | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99605/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99605/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:07:34 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (92.10 %) | |
| Files: 18755 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'zlwgeoedcsxjuxmsxmqszgt6asxykrym' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%nvhpc+gpu~legacy-unit+nmodl~report+tests build_type=RelWithDebInfo | |
| [+] ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - zlwgeoe coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] nswa657 ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| ==> Installing coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym | |
| ==> No binary for coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-zlwgeo | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99605/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99605/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:14:09 2021 | |
| Hits: 86 / 95 (90.53 %) | |
| Direct: 1 / 95 (1.05 %) | |
| Preprocessed: 85 / 94 (90.43 %) | |
| Misses: 9 | |
| Direct: 94 | |
| Preprocessed: 9 | |
| Uncacheable: 15 | |
| Primary storage: | |
| Hits: 87 / 190 (45.79 %) | |
| Misses: 103 | |
| Cache size (GB): 0.47 / 0.51 (92.35 %) | |
| Files: 18828 | |
| Cleanups: 6 | |
| Uncacheable: | |
| Called for linking: 12 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638198850:step_script [0Ksection_start:1638198850:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=223829 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 19389 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638198879:archive_cache [0Ksection_start:1638198879:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224708 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99605 responseStatus[0;m=201 Created token[0;m=MwkCnxEx | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224737 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99605 responseStatus[0;m=201 Created token[0;m=MwkCnxEx | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224770 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99605 responseStatus[0;m=201 Created token[0;m=MwkCnxEx | |
| section_end:1638198880:upload_artifacts_on_success [0Ksection_start:1638198880:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638198881:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198404:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198404:resolve_secrets [0Ksection_start:1638198404:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor162549767, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99603 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99603 | |
| A slurm job will be created with name GL_J99603_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94301 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638198409:prepare_executor [0Ksection_start:1638198409:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1638198411:prepare_script [0Ksection_start:1638198411:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198412:get_sources [0Ksection_start:1638198412:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=285847 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638198428:restore_cache [0Ksection_start:1638198428:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl:intel (99601)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=285992 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99601 responseStatus[0;m=200 OK token[0;m=MX5ySE1h | |
| section_end:1638198429:download_artifacts [0Ksection_start:1638198429:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99603/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99603/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99603/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99603/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99603/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ echo New ref for ${SPACK_PACKAGE} is ${PACKAGE_REF}[0;m | |
| New ref for coreneuron is commit="d86aefa82808e5df00dcbd3c88d9893994c7f531" | |
| [32;1m$ sed -i -e "/^\s*version\s*(\s*\(['\"]\)develop\1/ { s/,\s*\(commit\|tag\|branch\)=\([\"']\)[^\"']\+\2//g; s#)#, ${PACKAGE_REF})#; }" "${SPACK_PACKAGE_FILE}"[0;m | |
| [32;1m$ (cd $(dirname "${SPACK_PACKAGE_FILE}") && git diff "${SPACK_PACKAGE_FILE}")[0;m | |
| diff --git a/var/spack/repos/builtin/packages/coreneuron/package.py b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| index a4e7814..dbfb69d 100644 | |
| --- a/var/spack/repos/builtin/packages/coreneuron/package.py | |
| +++ b/var/spack/repos/builtin/packages/coreneuron/package.py | |
| @@ -18,7 +18,7 @@ class Coreneuron(CMakePackage): | |
| url = "https://github.com/BlueBrain/CoreNeuron" | |
| git = "https://github.com/BlueBrain/CoreNeuron" | |
| - version('develop', branch='master') | |
| + version('develop', commit="d86aefa82808e5df00dcbd3c88d9893994c7f531") | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20211020', commit='e265f9d') | |
| version('1.0.0.20211012', commit='846b3a6') | |
| [32;1m$ fi[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron@develop%intel+nmodl+tests~legacy-unit build_type=Debug ^/lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99603/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99603/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:07:41 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.42 / 0.51 (81.48 %) | |
| Files: 13221 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'cwjs4t3f4wyl5jax3fb2obxbvjopwgn3' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron@develop%intel~legacy-unit+nmodl+tests build_type=Debug | |
| [+] ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - cwjs4t3 coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| ==> Installing coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 | |
| ==> No binary for coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-cwjs4t | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99603/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99603/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:10:01 2021 | |
| Hits: 81 / 95 (85.26 %) | |
| Direct: 0 / 96 (0.00 %) | |
| Preprocessed: 81 / 96 (84.38 %) | |
| Misses: 14 | |
| Direct: 96 | |
| Preprocessed: 15 | |
| Uncacheable: 17 | |
| Primary storage: | |
| Hits: 81 / 192 (42.19 %) | |
| Misses: 111 | |
| Cache size (GB): 0.42 / 0.51 (81.86 %) | |
| Files: 13330 | |
| Uncacheable: | |
| Called for linking: 13 | |
| Compiler produced no output: 1 | |
| No input file: 3 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638198602:step_script [0Ksection_start:1638198602:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache coreneuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=288577 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 13891 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/coreneuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638198623:archive_cache [0Ksection_start:1638198623:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=288678 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99603 responseStatus[0;m=201 Created token[0;m=USoRFWfN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=288700 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99603 responseStatus[0;m=201 Created token[0;m=USoRFWfN | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=288723 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99603 responseStatus[0;m=201 Created token[0;m=USoRFWfN | |
| section_end:1638198625:upload_artifacts_on_success [0Ksection_start:1638198625:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638198626:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197685:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197685:resolve_secrets [0Ksection_start:1638197685:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor556975565, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99614 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99614 | |
| A slurm job will be created with name GL_J99614_PROD_P112_CP6_C8 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94198 | |
| job state: R | |
| section_end:1638197686:prepare_executor [0Ksection_start:1638197686:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n19 via bbpv1.epfl.ch... | |
| section_end:1638197688:prepare_script [0Ksection_start:1638197688:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197688:get_sources [0Ksection_start:1638197688:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=165507 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638197721:restore_cache [0Ksection_start:1638197721:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:gpu (99606)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=168176 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99606 responseStatus[0;m=200 OK token[0;m=yGMmnvvw | |
| section_end:1638197722:download_artifacts [0Ksection_start:1638197722:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99614/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99614/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99614/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99614/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99614/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/d5jp63omt63hmfz46ab5b5um2wtosys4^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be vkogqddlipn6wfzq2o4mkbt36t7uknzy | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99614/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99614/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:56:01 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.50 / 0.51 (97.03 %) | |
| Files: 34673 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'vkogqddlipn6wfzq2o4mkbt36t7uknzy' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-numpy%gcc | |
| Concretized | |
| -------------------------------- | |
| - vkogqdd neuron@develop%nvhpc@21.9+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] d5jp63o ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nrapte7 ^gettext@0.21%nvhpc@21.9+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] 2ysh2tt ^bzip2@1.0.8%nvhpc@21.9+shared arch=linux-rhel7-x86_64 | |
| [^] ibezovc ^libiconv@1.16%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] tnqe7c4 ^libxml2@2.9.10%nvhpc@21.9~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] zxjo677 ^pkgconf@1.7.3%nvhpc@21.9 patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] l66doh5 ^xz@5.2.5%nvhpc@21.9~pic arch=linux-rhel7-x86_64 | |
| [^] elbqaor ^zlib@1.2.11%nvhpc@21.9+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] bgo3uwo ^ncurses@6.2%nvhpc@21.9~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] 3rfyifb ^tar@1.28%nvhpc@21.9 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] o4qjffl ^py-cython@0.29.21%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] oq5gdcc ^py-mpi4py@3.0.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] 4krfyfj ^py-numpy@1.19.4%gcc@9.3.0+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^intel-mkl@2018.3.222%gcc@9.3.0~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] yuqhyr2 ^py-setuptools-scm@4.1.2%nvhpc@21.9+toml arch=linux-rhel7-x86_64 | |
| [^] bk3d6wo ^py-toml@0.10.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] gzeyuxm ^py-pytest-cov@2.8.1%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] mplwm3p ^py-coverage@5.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfcagzk ^readline@8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-2ysh2tt3lnl2uvfsnbg7krzev3ysdear) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libiconv-1.16-ibezov | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/pkgconf-1.7.3-zxjo67 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/xz-5.2.5-l66doh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-elbqaor47ega2nun5e64w3s4tllg35cq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-bgo3uwovij7lsxpbsk2cgyoghc3okxkl) | |
| [+] /usr (external tar-1.28-3rfyifbrzrnqstk63f6zfnxe4vf7herg) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kfcagzks7msvsixt2q7vdt2t33xo5rih) | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-d5jp63 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libxml2-2.9.10-tnqe7c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/gettext-0.21-nrapte | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-mpi4py-3.0.3-oq5gdc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-o4qjff | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-coverage-5.3-mplwm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-toml-0.10.0-bk3d6w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-4krfyf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-scm-4.1.2-yuqhyr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-cov-2.8.1-gzeyux | |
| ==> Installing neuron-develop-vkogqddlipn6wfzq2o4mkbt36t7uknzy | |
| ==> No binary for neuron-develop-vkogqddlipn6wfzq2o4mkbt36t7uknzy found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/neuron-develop-vkogqd | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99614/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99614/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:06:56 2021 | |
| Hits: 526 / 901 (58.38 %) | |
| Direct: 12 / 910 (1.32 %) | |
| Preprocessed: 514 / 892 (57.62 %) | |
| Misses: 375 | |
| Direct: 898 | |
| Preprocessed: 378 | |
| Uncacheable: 134 | |
| Primary storage: | |
| Hits: 572 / 1814 (31.53 %) | |
| Misses: 1242 | |
| Cache size (GB): 0.50 / 0.51 (97.68 %) | |
| Files: 34851 | |
| Cleanups: 13 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 111 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638198417:step_script [0Ksection_start:1638198417:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=203552 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 35412 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638198454:archive_cache [0Ksection_start:1638198454:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=205436 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99614 responseStatus[0;m=201 Created token[0;m=YXbDhcCk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=205460 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99614 responseStatus[0;m=201 Created token[0;m=YXbDhcCk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=205485 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99614 responseStatus[0;m=201 Created token[0;m=YXbDhcCk | |
| section_end:1638198456:upload_artifacts_on_success [0Ksection_start:1638198456:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638198456:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197664:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197664:resolve_secrets [0Ksection_start:1638197664:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor137070967, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99612 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99612 | |
| A slurm job will be created with name GL_J99612_PROD_P112_CP5_C7 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94195 | |
| job state: R | |
| section_end:1638197665:prepare_executor [0Ksection_start:1638197665:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n20 via bbpv1.epfl.ch... | |
| section_end:1638197667:prepare_script [0Ksection_start:1638197667:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197668:get_sources [0Ksection_start:1638197668:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=116577 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638197694:restore_cache [0Ksection_start:1638197694:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:intel (99604)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=117168 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99604 responseStatus[0;m=200 OK token[0;m=ENV9BvMs | |
| section_end:1638197695:download_artifacts [0Ksection_start:1638197695:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99612/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99612/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99612/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99612/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99612/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/aevgkbdozl3htdtjhrd5w65n3c6mb2jh | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be mvn7s3za436y6xrhbspwpy7pbewubnvm | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99612/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99612/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:55:34 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.48 / 0.51 (93.84 %) | |
| Files: 26421 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'mvn7s3za436y6xrhbspwpy7pbewubnvm' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - mvn7s3z neuron@develop%intel@19.1.2.254+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] aevgkbd ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^gettext@0.21%intel@19.1.2.254+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^bzip2@1.0.8%intel@19.1.2.254+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^libiconv@1.16%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^libxml2@2.9.10%intel@19.1.2.254~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^pkgconf@1.7.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^xz@5.2.5%intel@19.1.2.254~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^ncurses@6.2%intel@19.1.2.254~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^tar@1.28%intel@19.1.2.254 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^py-cython@0.29.21%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] mr7m2z7 ^py-mpi4py@3.0.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^py-numpy@1.19.4%intel@19.1.2.254+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^intel-mkl@2018.3.222%intel@19.1.2.254~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^py-setuptools-scm@4.1.2%intel@19.1.2.254+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^py-toml@0.10.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - zniig3b ^py-pytest-cov@2.8.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - 2v5wfwa ^py-coverage@5.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^readline@8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-mr7m2z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| ==> Installing py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk | |
| ==> No binary for py-coverage-5.3-2v5wfwapuwn63xqjymkn5jpew7mdm6uk found: installing from source | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/28/280baa8ec489c4f542f8940f9c4c2181f0306a8ee1a54eceba071a449fb870a0.tar.gz | |
| ==> py-coverage: Executing phase: 'build' | |
| ==> py-coverage: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-aevgkb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe | |
| ==> No binary for py-pytest-cov-2.8.1-zniig3b6klz2ibslrfa3digiozwp46fe found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/cc/cc6742d8bac45070217169f5f72ceee1e0e55b0221f54bcf24845972d3a47f2b.tar.gz | |
| ==> py-pytest-cov: Executing phase: 'build' | |
| ==> py-pytest-cov: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| ==> Installing neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm | |
| ==> No binary for neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm found: installing from source | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-mvn7s3 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99612/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99612/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:07:37 2021 | |
| Hits: 452 / 903 (50.06 %) | |
| Direct: 14 / 912 (1.54 %) | |
| Preprocessed: 438 / 892 (49.10 %) | |
| Misses: 451 | |
| Direct: 898 | |
| Preprocessed: 454 | |
| Uncacheable: 144 | |
| Primary storage: | |
| Hits: 503 / 1818 (27.67 %) | |
| Misses: 1315 | |
| Cache size (GB): 0.47 / 0.51 (90.94 %) | |
| Files: 25541 | |
| Cleanups: 12 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 121 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638198458:step_script [0Ksection_start:1638198458:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=149102 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 26102 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638198488:archive_cache [0Ksection_start:1638198488:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=149210 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99612 responseStatus[0;m=201 Created token[0;m=4HmtcF3z | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=149235 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99612 responseStatus[0;m=201 Created token[0;m=4HmtcF3z | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=149258 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99612 responseStatus[0;m=201 Created token[0;m=4HmtcF3z | |
| section_end:1638198489:upload_artifacts_on_success [0Ksection_start:1638198489:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638198490:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198885:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198885:resolve_secrets [0Ksection_start:1638198885:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor116781813, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99613 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99613 | |
| A slurm job will be created with name GL_J99613_PROD_P112_CP7_C14 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94326 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638198899:prepare_executor [0Ksection_start:1638198899:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n19 via bbpv1.epfl.ch... | |
| section_end:1638198901:prepare_script [0Ksection_start:1638198901:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198902:get_sources [0Ksection_start:1638198902:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=225924 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638198937:restore_cache [0Ksection_start:1638198937:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (99605)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=226470 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99605 responseStatus[0;m=200 OK token[0;m=MwkCnxEx | |
| section_end:1638198938:download_artifacts [0Ksection_start:1638198938:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES="${SPACK_PACKAGE_DEPENDENCIES}^py-cython%gcc^py-numpy%gcc"[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99613/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99613/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99613/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99613/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99613/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%nvhpc+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/zlwgeoedcsxjuxmsxmqszgt6asxykrym^py-cython%gcc^py-numpy%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be kxhxq4seozqasdxdnbgni3g566ai7oyd | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99613/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99613/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:16:15 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.50 / 0.51 (97.68 %) | |
| Files: 34851 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'kxhxq4seozqasdxdnbgni3g566ai7oyd' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%nvhpc+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - ^py-cython%gcc | |
| - ^py-numpy%gcc | |
| Concretized | |
| -------------------------------- | |
| - kxhxq4s neuron@develop%nvhpc@21.9+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] zlwgeoe ^coreneuron@develop%nvhpc@21.9~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile~report+shared~sympy~sympyopt+tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] jjxvkgg ^boost@1.73.0%nvhpc@21.9+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556,d56f31f2a3956630e5372b987d39cb79b5d2c71760fa150b8eb4a3f1a07e2658 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nbtppas ^cuda@11.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] x64zuwg ^hpe-mpi@2.25.hmpt%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] nswa657 ^nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [+] hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] nrapte7 ^gettext@0.21%nvhpc@21.9+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-x86_64 | |
| [^] 2ysh2tt ^bzip2@1.0.8%nvhpc@21.9+shared arch=linux-rhel7-x86_64 | |
| [^] ibezovc ^libiconv@1.16%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] tnqe7c4 ^libxml2@2.9.10%nvhpc@21.9~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-x86_64 | |
| [^] zxjo677 ^pkgconf@1.7.3%nvhpc@21.9 patches=6e94c68d45d4cb8148c8c53699921d10b13784f758f0563ce64c838e0ca48ceb arch=linux-rhel7-x86_64 | |
| [^] l66doh5 ^xz@5.2.5%nvhpc@21.9~pic arch=linux-rhel7-x86_64 | |
| [^] elbqaor ^zlib@1.2.11%nvhpc@21.9+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] bgo3uwo ^ncurses@6.2%nvhpc@21.9~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] 3rfyifb ^tar@1.28%nvhpc@21.9 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,4e8cdf69294c376c45c39d059f11769c5c996c2d84cdfb56eb69890e0aa4e991,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] o4qjffl ^py-cython@0.29.21%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] oq5gdcc ^py-mpi4py@3.0.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [+] 4krfyfj ^py-numpy@1.19.4%gcc@9.3.0+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] syahjjg ^intel-mkl@2018.3.222%gcc@9.3.0~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [^] gzeyuxm ^py-pytest-cov@2.8.1%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] mplwm3p ^py-coverage@5.3%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfcagzk ^readline@8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-jjxvkgghuqodteqzd72lafa2xfxz24dh) | |
| ==> cuda@11.4.2 : has external module in ['cuda/11.4.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cuda-11.4.2-amtb6x (external cuda-11.4.2-nbtppaslouhuyhs6zerdalvlcfjchwrp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-x64zuwghhre5idfwdiqzak5ynxfem2aj) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-2ysh2tt3lnl2uvfsnbg7krzev3ysdear) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libiconv-1.16-ibezov | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/pkgconf-1.7.3-zxjo67 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/xz-5.2.5-l66doh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-elbqaor47ega2nun5e64w3s4tllg35cq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-bgo3uwovij7lsxpbsk2cgyoghc3okxkl) | |
| [+] /usr (external tar-1.28-3rfyifbrzrnqstk63f6zfnxe4vf7herg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-syahjjgpawq4c4jicb753yciaowfyr75) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kfcagzks7msvsixt2q7vdt2t33xo5rih) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/libxml2-2.9.10-tnqe7c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-coverage-5.3-mplwm3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-cython-0.29.21-o4qjff | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-mpi4py-3.0.3-oq5gdc | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/gettext-0.21-nrapte | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/py-numpy-1.19.4-4krfyf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-cov-2.8.1-gzeyux | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/coreneuron-develop-zlwgeo | |
| ==> Installing neuron-develop-kxhxq4seozqasdxdnbgni3g566ai7oyd | |
| ==> No binary for neuron-develop-kxhxq4seozqasdxdnbgni3g566ai7oyd found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/neuron-develop-kxhxq4 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99613/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99613/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:27:30 2021 | |
| Hits: 527 / 899 (58.62 %) | |
| Direct: 11 / 908 (1.21 %) | |
| Preprocessed: 516 / 891 (57.91 %) | |
| Misses: 372 | |
| Direct: 897 | |
| Preprocessed: 375 | |
| Uncacheable: 135 | |
| Primary storage: | |
| Hits: 540 / 1810 (29.83 %) | |
| Misses: 1270 | |
| Cache size (GB): 0.50 / 0.51 (98.29 %) | |
| Files: 35052 | |
| Cleanups: 14 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 112 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638199651:step_script [0Ksection_start:1638199651:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=263113 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 35613 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638199686:archive_cache [0Ksection_start:1638199686:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=263263 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99613 responseStatus[0;m=201 Created token[0;m=-dKbWSDM | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=263291 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99613 responseStatus[0;m=201 Created token[0;m=-dKbWSDM | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=263321 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99613 responseStatus[0;m=201 Created token[0;m=-dKbWSDM | |
| section_end:1638199688:upload_artifacts_on_success [0Ksection_start:1638199688:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638199689:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198636:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198636:resolve_secrets [0Ksection_start:1638198636:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor633710135, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99611 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99611 | |
| A slurm job will be created with name GL_J99611_PROD_P112_CP6_C7 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94310 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638198655:prepare_executor [0Ksection_start:1638198655:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n20 via bbpv1.epfl.ch... | |
| section_end:1638198659:prepare_script [0Ksection_start:1638198659:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198660:get_sources [0Ksection_start:1638198660:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=150070 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638198687:restore_cache [0Ksection_start:1638198687:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:intel (99603)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=150609 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99603 responseStatus[0;m=200 OK token[0;m=USoRFWfN | |
| section_end:1638198687:download_artifacts [0Ksection_start:1638198687:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99611/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99611/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99611/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99611/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99611/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron@develop%intel+coreneuron+debug+tests~legacy-unit model_tests=channel-benchmark,olfactory ^/cwjs4t3f4wyl5jax3fb2obxbvjopwgn3 | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be jhigcl7ephcbe47kbyz2znl76v2kaeev | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99611/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99611/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:12:02 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (90.94 %) | |
| Files: 25541 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'jhigcl7ephcbe47kbyz2znl76v2kaeev' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron@develop%intel+coreneuron+debug~legacy-unit+tests model_tests=channel-benchmark,olfactory | |
| [+] ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| Concretized | |
| -------------------------------- | |
| - jhigcl7 neuron@develop%intel@19.1.2.254+binary+cmake~codechecks+coreneuron~cross-compile+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+multisend~profile+pysetup+python+rx3d+shared+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| [+] cwjs4t3 ^coreneuron@develop%intel@19.1.2.254~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests build_type=Debug arch=linux-rhel7-x86_64 | |
| [^] pvpzjkl ^boost@1.73.0%intel@19.1.2.254+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 patches=246508e052c44b6f4e8c2542a71c06cacaa72cd1447ab8d2a542b987bc35ace9,4dd507e1f5a29e3b87b15321a4d8c74afdc8331433edabf7aeab89b3c405d556 visibility=hidden arch=linux-rhel7-x86_64 | |
| [^] nnhu6zi ^hpe-mpi@2.25.hmpt%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 2gn7wjx ^libsonata-report@1.0.0.20211007%intel@19.1.2.254~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [^] pjaxv63 ^hdf5@1.10.7%intel@19.1.2.254+cxx~debug~fortran+hl~java+mpi+pic+shared~szip~threadsafe api=none arch=linux-rhel7-x86_64 | |
| [^] wjshhip ^zlib@1.2.11%intel@19.1.2.254+optimize+pic+shared arch=linux-rhel7-x86_64 | |
| [^] gwht6mm ^spdlog@1.8.1%intel@19.1.2.254~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] lqyttqy ^nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| [+] ubiktsv ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] yrbfda2 ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] oe2hrft ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] runxrmn ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] d6t5uhn ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 7eg3tqe ^reportinglib@2.5.6%intel@19.1.2.254~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| [^] 6vrzcuv ^gettext@0.21%intel@19.1.2.254+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-x86_64 | |
| [^] 6zbb66a ^bzip2@1.0.8%intel@19.1.2.254+shared arch=linux-rhel7-x86_64 | |
| [^] qlmq4dv ^libiconv@1.16%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] 6lr2umn ^libxml2@2.9.10%intel@19.1.2.254~python arch=linux-rhel7-x86_64 | |
| [^] 2qyzkdl ^pkgconf@1.7.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] wzx3yy4 ^xz@5.2.5%intel@19.1.2.254~pic arch=linux-rhel7-x86_64 | |
| [^] nedfnju ^ncurses@6.2%intel@19.1.2.254~symlinks+termlib arch=linux-rhel7-x86_64 | |
| [^] d4pg4b2 ^tar@1.28%intel@19.1.2.254 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] i3t5fut ^py-cython@0.29.21%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] mr7m2z7 ^py-mpi4py@3.0.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] l643i7a ^py-numpy@1.19.4%intel@19.1.2.254+blas+lapack arch=linux-rhel7-x86_64 | |
| [^] nnxc4wm ^intel-mkl@2018.3.222%intel@19.1.2.254~ilp64+shared threads=none arch=linux-rhel7-x86_64 | |
| [+] zniig3b ^py-pytest-cov@2.8.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [+] 2v5wfwa ^py-coverage@5.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kej56sd ^readline@8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/boost-1.73.0-n5sq7k (external boost-1.73.0-pvpzjklfqyl55rerdxp63j32kpqkfr4z) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/hpe-mpi-2.25.hmpt-l6dob7 (external hpe-mpi-2.25.hmpt-nnhu6ziqp6ramcgkmky7i3e2ll5vl5ey) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/zlib-1.2.11-uubmvo (external zlib-1.2.11-wjshhipoj5m66agnke3p2dsjf32qntuf) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/spdlog-1.8.1-gwht6m | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bzip2-1.0.8-vatuhz (external bzip2-1.0.8-6zbb66a3uunskwyljh6sbgo36hbo7lj4) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libiconv-1.16-qlmq4d | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/pkgconf-1.7.3-2qyzkd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/xz-5.2.5-wzx3yy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ncurses-6.2-xvsnay (external ncurses-6.2-nedfnju3ptngli3lpj3occtiuoe2x6e3) | |
| [+] /usr (external tar-1.28-d4pg4b2ncvxd3p2ptw3j4os6jb5a7yvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/intel-mkl-2018.3.222-xjuqsf (external intel-mkl-2018.3.222-nnxc4wmon4s26gfyily3n6tqa43p36rj) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/readline-8.0-f2v4sr (external readline-8.0-kej56sdf2cwo7ximwd5foo34wzwveqxc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/reportinglib-2.5.6-7eg3tq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/hdf5-1.10.7-pjaxv6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libxml2-2.9.10-6lr2um | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libsonata-report-1.0.0.20211007-2gn7wj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-cython-0.29.21-i3t5fu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-mpi4py-3.0.3-mr7m2z | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-coverage-5.3-2v5wfw | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/gettext-0.21-6vrzcu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-numpy-1.19.4-l643i7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-cov-2.8.1-zniig3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/coreneuron-develop-cwjs4t | |
| ==> Installing neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev | |
| ==> No binary for neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Warning: Missing a source id for neuron@develop | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/neuron-develop-jhigcl | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99611/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99611/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:20:39 2021 | |
| Hits: 454 / 902 (50.33 %) | |
| Direct: 10 / 911 (1.10 %) | |
| Preprocessed: 444 / 895 (49.61 %) | |
| Misses: 448 | |
| Direct: 901 | |
| Preprocessed: 451 | |
| Uncacheable: 144 | |
| Primary storage: | |
| Hits: 466 / 1816 (25.66 %) | |
| Misses: 1350 | |
| Cache size (GB): 0.44 / 0.51 (85.64 %) | |
| Files: 23673 | |
| Cleanups: 11 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 121 | |
| Called for preprocessing: 1 | |
| Compilation failed: 3 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638199240:step_script [0Ksection_start:1638199240:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache neuron-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=177126 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 24234 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/neuron-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638199268:archive_cache [0Ksection_start:1638199268:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=177206 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99611 responseStatus[0;m=201 Created token[0;m=_qejfGV2 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=177227 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99611 responseStatus[0;m=201 Created token[0;m=_qejfGV2 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=177251 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99611 responseStatus[0;m=201 Created token[0;m=_qejfGV2 | |
| section_end:1638199270:upload_artifacts_on_success [0Ksection_start:1638199270:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638199270:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197472:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197472:resolve_secrets [0Ksection_start:1638197472:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor586583367, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99602 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99602 | |
| A slurm job will be created with name GL_J99602_PROD_P112_CP2_C3 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94186 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638197484:prepare_executor [0Ksection_start:1638197484:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n20 via bbpv1.epfl.ch... | |
| section_end:1638197487:prepare_script [0Ksection_start:1638197487:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197487:get_sources [0Ksection_start:1638197487:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for nmodl-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109675 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-nvhpc-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638197506:restore_cache [0Ksection_start:1638197506:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (99600)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=109770 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99600 responseStatus[0;m=200 OK token[0;m=3MyLTc3i | |
| section_end:1638197507:download_artifacts [0Ksection_start:1638197507:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99602/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99602/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99602/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99602/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99602/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%nvhpc~legacy-unit ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be nswa6573eazhleffns23ijmh436w7top | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99602/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99602/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:52:32 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.47 / 0.51 (92.24 %) | |
| Files: 1747 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'nswa6573eazhleffns23ijmh436w7top' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%nvhpc~legacy-unit | |
| - ^bison%gcc | |
| - ^flex%gcc | |
| - ^py-jinja2%gcc | |
| - ^py-pyyaml%gcc | |
| - ^py-sympy%gcc | |
| Concretized | |
| -------------------------------- | |
| - nswa657 nmodl@develop%nvhpc@21.9~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - mz42odj ^bison@3.6.4%nvhpc@21.9 patches=ad81ef1b088459a396d908295afc3809f9a25076efaa459cdd2f21eabd1f4b16 arch=linux-rhel7-x86_64 | |
| - lpu6i7p ^cmake@3.15.7%nvhpc@21.9~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - nlmxfru ^flex@2.6.4%nvhpc@21.9+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - avc6rx5 ^ninja@1.10.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - ccuqt3m ^py-jinja2@2.10.3%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - hg7eomm ^py-babel@2.7.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - 5ytmph6 ^py-pytz@2020.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] 7bw7pw5 ^py-setuptools@50.3.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ni2y6im ^python@3.8.3%nvhpc@21.9+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - uu54yde ^py-markupsafe@1.1.1%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [^] rndnnfg ^py-pytest@5.3.4%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] iugmk34 ^py-attrs@20.3.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kfhiued ^py-more-itertools@8.7.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] 43elgth ^py-packaging@19.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] kcc57g2 ^py-pyparsing@2.4.2%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] qctdzu4 ^py-six@1.16.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] npfkk2d ^py-pluggy@0.13.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] yuqhyr2 ^py-setuptools-scm@4.1.2%nvhpc@21.9+toml arch=linux-rhel7-x86_64 | |
| [^] bk3d6wo ^py-toml@0.10.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] ybqmc22 ^py-py@1.8.0%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| [^] afmj4ex ^py-wcwidth@0.1.7%nvhpc@21.9 arch=linux-rhel7-x86_64 | |
| - sujyde4 ^py-pyyaml@5.3.1%gcc@9.3.0+libyaml arch=linux-rhel7-x86_64 | |
| [^] ggibzjm ^libyaml@0.2.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - oekgd2o ^py-sympy@1.4%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| - hsn2r4n ^py-mpmath@1.1.0%gcc@9.3.0 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-mz42odjxwfev23mgclgpgkustsebup72) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-lpu6i7pkviopkugggid2tave7uyd6y2j) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-nlmxfrujm6vsjou3blvzzwtcyjkloybu) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-avc6rx55mmu6uajw24ije7oqw7ge6r3w) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-ni2y6imbyi6y34r36orewroy7viqedhy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/libyaml-0.2.4-ggibzj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-50.3.2-7bw7pw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-six-1.16.0-qctdzu | |
| ==> Installing py-mpmath-1.1.0-hsn2r4nbqjhzewaw5soovd2t5ud7cpxi | |
| ==> No binary for py-mpmath-1.1.0-hsn2r4nbqjhzewaw5soovd2t5ud7cpxi found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-mpmath-1.1.0-hsn2r4 | |
| ==> Installing py-pyyaml-5.3.1-sujyde4lpezqcdg4rwhbpoaratxzarxk | |
| ==> No binary for py-pyyaml-5.3.1-sujyde4lpezqcdg4rwhbpoaratxzarxk found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/b8/b8eac752c5e14d3eca0e6dd9199cd627518cb5ec06add0de9d32baeee6fe645d.tar.gz | |
| ==> py-pyyaml: Executing phase: 'build_ext' | |
| ==> py-pyyaml: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pyyaml-5.3.1-sujyde | |
| ==> Installing py-pytz-2020.1-5ytmph6jauaabucz5ftlb3luonjitpyh | |
| ==> No binary for py-pytz-2020.1-5ytmph6jauaabucz5ftlb3luonjitpyh found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/c3/c35965d010ce31b23eeb663ed3cc8c906275d6be1a34393a1d73a41febf4a048.tar.gz | |
| ==> py-pytz: Executing phase: 'build' | |
| ==> py-pytz: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-pytz-2020.1-5ytmph | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-toml-0.10.0-bk3d6w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-wcwidth-0.1.7-afmj4e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pyparsing-2.4.2-kcc57g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-more-itertools-8.7.0-kfhiue | |
| ==> Installing py-markupsafe-1.1.1-uu54yden3pmltnbphrqkavx46jvq7xnu | |
| ==> No binary for py-markupsafe-1.1.1-uu54yden3pmltnbphrqkavx46jvq7xnu found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-markupsafe-1.1.1-uu54yd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-attrs-20.3.0-iugmk3 | |
| ==> Installing py-sympy-1.4-oekgd2ou3e7lvizgzw7ztjyx5npcnhjc | |
| ==> No binary for py-sympy-1.4-oekgd2ou3e7lvizgzw7ztjyx5npcnhjc found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-sympy-1.4-oekgd2 | |
| ==> Installing py-babel-2.7.0-hg7eommvskkocenyvv7wvashro4vnb2o | |
| ==> No binary for py-babel-2.7.0-hg7eommvskkocenyvv7wvashro4vnb2o found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-babel-2.7.0-hg7eom | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-setuptools-scm-4.1.2-yuqhyr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-packaging-19.2-43elgt | |
| ==> Installing py-jinja2-2.10.3-ccuqt3mppqfwu2gdnafhdw6kj77bmc2e | |
| ==> No binary for py-jinja2-2.10.3-ccuqt3mppqfwu2gdnafhdw6kj77bmc2e found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/gcc-9.3.0/py-jinja2-2.10.3-ccuqt3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pluggy-0.13.0-npfkk2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-py-1.8.0-ybqmc2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/nvhpc-21.9/py-pytest-5.3.4-rndnnf | |
| ==> Installing nmodl-develop-nswa6573eazhleffns23ijmh436w7top | |
| ==> No binary for nmodl-develop-nswa6573eazhleffns23ijmh436w7top found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/nvhpc-21.9/nmodl-develop-nswa65 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99602/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99602/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:05:45 2021 | |
| Hits: 64 / 135 (47.41 %) | |
| Direct: 33 / 135 (24.44 %) | |
| Preprocessed: 31 / 102 (30.39 %) | |
| Misses: 71 | |
| Direct: 102 | |
| Preprocessed: 71 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 97 / 270 (35.93 %) | |
| Misses: 173 | |
| Cache size (GB): 0.48 / 0.51 (92.96 %) | |
| Files: 1764 | |
| Cleanups: 9 | |
| Uncacheable: | |
| Called for linking: 26 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638198354:step_script [0Ksection_start:1638198354:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache nmodl-nvhpc-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=145131 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 2325 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-nvhpc-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638198377:archive_cache [0Ksection_start:1638198377:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=145724 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99602 responseStatus[0;m=201 Created token[0;m=4jJhKejs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=145765 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99602 responseStatus[0;m=201 Created token[0;m=4jJhKejs | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=145790 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99602 responseStatus[0;m=201 Created token[0;m=4jJhKejs | |
| section_end:1638198379:upload_artifacts_on_success [0Ksection_start:1638198379:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638198379:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197471:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197471:resolve_secrets [0Ksection_start:1638197471:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor214193037, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99601 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99601 | |
| A slurm job will be created with name GL_J99601_PROD_P112_CP0_C1 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94185 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638197485:prepare_executor [0Ksection_start:1638197485:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1638197487:prepare_script [0Ksection_start:1638197487:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197487:get_sources [0Ksection_start:1638197487:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for nmodl-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=279111 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-intel-5[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1638197503:restore_cache [0Ksection_start:1638197503:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (99600)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=279181 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99600 responseStatus[0;m=200 OK token[0;m=3MyLTc3i | |
| section_end:1638197504:download_artifacts [0Ksection_start:1638197504:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ SPACK_CONFIG=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_CONFIG}[0;m | |
| [32;1m$ cat > ${SPACK_CONFIG}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99601/_/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99601/_/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99601/_/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:69 - $tempdir/$user/spack-stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 - ~/.spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # - $spack/var/spack/stage | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Directory in which to run tests and store test results. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:70 # Tests will be stored in directories named by date/time and package | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99601/_/spack-config/config.yaml:4 # name/hash. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:2 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99601/_/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:3 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:20 all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:5 root: $spack/opt/spack | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/config.yaml:6 build_jobs: 36 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:33 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:34 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:38 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:39 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:40 # Locations where different types of modules should be installed. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:76 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:85 tcl: $spack/share/spack/modules | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:91 lmod: $spack/share/spack/lmod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:96 test_stage: ~/.spack/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:104 misc_cache: ~/.spack/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:110 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:115 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:120 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:128 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:137 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:163 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:170 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:178 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:184 concretizer: original | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/etc/spack/defaults/config.yaml:189 db_lock_timeout: 300 | |
| _builtin package_lock_timeout: !!null 'None' | |
| [32;1m$ if [ "${SPACK_EXPORT_SPECS}" ]; then[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${PWD}/local_config[0;m | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ REF_OVERRIDE_NAME=SPACK_PACKAGE_REF_${SPACK_PACKAGE}[0;m | |
| [32;1m$ PACKAGE_REF=${!REF_OVERRIDE_NAME:-$SPACK_PACKAGE_REF}[0;m | |
| [32;1m$ SPACK_PACKAGE_FILE="$(spack location -p ${SPACK_PACKAGE})/package.py"[0;m | |
| [32;1m$ if [ "${PACKAGE_REF}" ]; then[0;m | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}@develop${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER}${SPACK_PACKAGE_SPEC}${SPACK_PACKAGE_DEPENDENCIES:+ }${SPACK_PACKAGE_DEPENDENCIES}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl@develop%intel~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack --config-scope ${SPACK_CONFIG} spec --json ${SPACK_FULL_SPEC})[0;m | |
| ==> Warning: Missing a source id for nmodl@develop | |
| [32;1m$ SPACK_INSTALLED_HASH=$(echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][0][\"${SPACK_PACKAGE}\"][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be lqyttqytclxdwwickak7uvjmb6a3au3g | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=${SPACK_STAGE_DIR}[0;m | |
| [32;1m$ export CCACHE_DIR=${CI_PROJECT_DIR}/ccache[0;m | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ mkdir -p ${CCACHE_BASEDIR}[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99601/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99601/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 15:52:28 2021 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.48 / 0.51 (94.57 %) | |
| Files: 658 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git gcc[0;m | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'lqyttqytclxdwwickak7uvjmb6a3au3g' | |
| [32;1m$ spack --config-scope ${SPACK_CONFIG} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl@develop%intel~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - lqyttqy nmodl@develop%intel@19.1.2.254~ipo~legacy-unit~python build_type=RelWithDebInfo arch=linux-rhel7-x86_64 | |
| - ymcya3l ^bison@3.6.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mxqypex ^cmake@3.15.7%intel@19.1.2.254~doc+ncurses+openssl+ownlibs~qt build_type=Release patches=1c540040c7e203dd8e27aa20345ecb07fe06570d56410a24a266ae570b1c4c39,bf695e3febb222da2ed94b3beea600650e4318975da90e4a71d6f31a6d5d8c3d arch=linux-rhel7-x86_64 | |
| - 5mabxtb ^flex@2.6.4%intel@19.1.2.254+lex patches=09c22e5c6fef327d3e48eb23f0d610dcd3a35ab9207f12e0f875701c677978d3 arch=linux-rhel7-x86_64 | |
| - nayogh4 ^ninja@1.10.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - ubiktsv ^py-jinja2@2.10.3%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - yrbfda2 ^py-babel@2.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] oe2c27i ^py-pytz@2020.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xfgkmkd ^py-setuptools@50.3.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] icfhbit ^python@3.8.3%intel@19.1.2.254+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87 arch=linux-rhel7-x86_64 | |
| - oe2hrft ^py-markupsafe@1.1.1%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - jo63uk3 ^py-pytest@5.3.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] kcyedyh ^py-attrs@20.3.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - mikhjgq ^py-more-itertools@8.7.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - hziuwhj ^py-packaging@19.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] vpsqgcg ^py-pyparsing@2.4.2%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] xgnwei3 ^py-six@1.16.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - gc3zsis ^py-pluggy@0.13.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] ze65gmo ^py-setuptools-scm@4.1.2%intel@19.1.2.254+toml arch=linux-rhel7-x86_64 | |
| [^] p553wsa ^py-toml@0.10.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - 557icag ^py-py@1.8.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - za7jmvs ^py-wcwidth@0.1.7%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [^] chpzzlm ^py-pyyaml@5.3.1%intel@19.1.2.254+libyaml arch=linux-rhel7-x86_64 | |
| [^] 4237mpr ^libyaml@0.2.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - runxrmn ^py-sympy@1.4%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| - d6t5uhn ^py-mpmath@1.1.0%intel@19.1.2.254 arch=linux-rhel7-x86_64 | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} --config-scope ${SPACK_CONFIG} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC}[0;m | |
| ==> bison@3.6.4 : has external module in ['bison/3.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/bison-3.6.4-sqrqli (external bison-3.6.4-ymcya3lbfxylkvsbomj2rbzbvecsldu2) | |
| ==> cmake@3.15.7 : has external module in ['cmake/3.15.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/cmake-3.15.7-4373ty (external cmake-3.15.7-mxqypexiy6wmh4hpnmf4lbwwwqhxzscg) | |
| ==> flex@2.6.4 : has external module in ['flex/2.6.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/flex-2.6.4-kpj7of (external flex-2.6.4-5mabxtbvp5xw7gfjcac32iffw27sdssk) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ninja-1.10.2-7mzwmh (external ninja-1.10.2-nayogh4gvnag7ybxc2ud5dt4ckxod3cc) | |
| ==> python@3.8.3 : has external module in ['python/3.8.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/python-3.8.3-suxrst (external python-3.8.3-icfhbitmltpoj6w6vghr23ac5erldiic) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/libyaml-0.2.4-4237mp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-50.3.2-xfgkmk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-six-1.16.0-xgnwei | |
| ==> Installing py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 | |
| ==> No binary for py-mpmath-1.1.0-d6t5uhnfv6vz76zvbq6dxzezju47q4b2 found: installing from source | |
| ==> Warning: Missing a source id for nmodl@develop | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fc/fc17abe05fbab3382b61a123c398508183406fa132e0223874578e20946499f6.tar.gz | |
| ==> py-mpmath: Executing phase: 'build' | |
| ==> py-mpmath: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-mpmath-1.1.0-d6t5uh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyyaml-5.3.1-chpzzl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pyparsing-2.4.2-vpsqgc | |
| ==> Installing py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 | |
| ==> No binary for py-markupsafe-1.1.1-oe2hrfthehpamljikolcjblr7mt52724 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/29/29872e92839765e546828bb7754a68c418d927cd064fd4708fab9fe9c8bb116b.tar.gz | |
| ==> py-markupsafe: Executing phase: 'build' | |
| ==> py-markupsafe: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-markupsafe-1.1.1-oe2hrf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/applications/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-attrs-20.3.0-kcyedy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-toml-0.10.0-p553ws | |
| ==> Installing py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k | |
| ==> No binary for py-wcwidth-0.1.7-za7jmvshfdsnmghmumjvxfinateuen3k found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/3d/3df37372226d6e63e1b1e1eda15c594bca98a22d33a23832a90998faa96bc65e.tar.gz | |
| ==> py-wcwidth: Executing phase: 'build' | |
| ==> py-wcwidth: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-wcwidth-0.1.7-za7jmv | |
| ==> Installing py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw | |
| ==> No binary for py-more-itertools-8.7.0-mikhjgqoad5w4yqy27gs5e6resjbaofw found: installing from source | |
| ==> Fetching https://pypi.io/packages/source/m/more-itertools/more-itertools-8.7.0.tar.gz | |
| ==> py-more-itertools: Executing phase: 'build' | |
| ==> py-more-itertools: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-more-itertools-8.7.0-mikhjg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-pytz-2020.1-oe2c27 | |
| ==> Installing py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw | |
| ==> No binary for py-sympy-1.4-runxrmnc6ccdqey2sq7njyz4u4i2x7xw found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/71/71a11e5686ae7ab6cb8feb5bd2651ef4482f8fd43a7c27e645a165e4353b23e1.tar.gz | |
| ==> py-sympy: Executing phase: 'build' | |
| ==> py-sympy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-sympy-1.4-runxrm | |
| ==> Installing py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt | |
| ==> No binary for py-packaging-19.2-hziuwhjrhckeozwekkhwxabvm4onfilt found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/28/28b924174df7a2fa32c1953825ff29c61e2f5e082343165438812f00d3a7fc47.tar.gz | |
| ==> py-packaging: Executing phase: 'build' | |
| ==> py-packaging: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-packaging-19.2-hziuwh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/libraries/2021-01-06/linux-rhel7-x86_64/intel-19.1.2.254/py-setuptools-scm-4.1.2-ze65gm | |
| ==> Installing py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 | |
| ==> No binary for py-babel-2.7.0-yrbfda2telivet3ruvwscmtafc7zoys7 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/e8/e86135ae101e31e2c8ec20a4e0c5220f4eed12487d5cf3f78be7e98d3a57fc28.tar.gz | |
| ==> py-babel: Executing phase: 'build' | |
| ==> py-babel: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-babel-2.7.0-yrbfda | |
| ==> Installing py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 | |
| ==> No binary for py-pluggy-0.13.0-gc3zsisoxxbiopoa44i536m232c65zb4 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/fa/fa5fa1622fa6dd5c030e9cad086fa19ef6a0cf6d7a2d12318e10cb49d6d68f34.tar.gz | |
| ==> py-pluggy: Executing phase: 'build' | |
| ==> py-pluggy: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pluggy-0.13.0-gc3zsi | |
| ==> Installing py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq | |
| ==> No binary for py-py-1.8.0-557icag4kia4rysswd2uxdettfkewclq found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/dc/dc639b046a6e2cff5bbe40194ad65936d6ba360b52b3c3fe1d08a82dd50b5e53.tar.gz | |
| ==> py-py: Executing phase: 'build' | |
| ==> py-py: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-py-1.8.0-557ica | |
| ==> Installing py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab | |
| ==> No binary for py-jinja2-2.10.3-ubiktsvw22gxnvhwzsoloqliz7czyhab found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/9f/9fe95f19286cfefaa917656583d020be14e7859c6b0252588391e47db34527de.tar.gz | |
| ==> py-jinja2: Executing phase: 'build' | |
| ==> py-jinja2: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-jinja2-2.10.3-ubikts | |
| ==> Installing py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 | |
| ==> No binary for py-pytest-5.3.4-jo63uk3qcowoxe2ogccodpfmsdr2r557 found: installing from source | |
| ==> Fetching https://mirror.spack.io/_source-cache/archive/1d/1d122e8be54d1a709e56f82e2d85dcba3018313d64647f38a91aec88c239b600.tar.gz | |
| ==> py-pytest: Executing phase: 'build' | |
| ==> py-pytest: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/py-pytest-5.3.4-jo63uk | |
| ==> Installing nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g | |
| ==> No binary for nmodl-develop-lqyttqytclxdwwickak7uvjmb6a3au3g found: installing from source | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_/spack/opt/spack/linux-rhel7-x86_64/intel-19.1.2.254/nmodl-develop-lqyttq | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99601/_/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99601/_/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/deploy/externals/2021-01-06/linux-rhel7-x86_64/gcc-9.3.0/ccache-4.4.2-rg3w3q/etc/ccache.conf | |
| Stats updated: Mon Nov 29 16:06:11 2021 | |
| Hits: 70 / 144 (48.61 %) | |
| Direct: 52 / 144 (36.11 %) | |
| Preprocessed: 18 / 92 (19.57 %) | |
| Misses: 74 | |
| Direct: 92 | |
| Preprocessed: 74 | |
| Uncacheable: 44 | |
| Primary storage: | |
| Hits: 188 / 288 (65.28 %) | |
| Misses: 100 | |
| Cache size (GB): 0.47 / 0.51 (91.54 %) | |
| Files: 639 | |
| Cleanups: 14 | |
| Uncacheable: | |
| Called for linking: 44 | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ SPACK_PACKAGE_DEPENDENCIES=^/${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCIES=${SPACK_PACKAGE_DEPENDENCIES}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.8.3 | |
| Autoloading py-virtualenv/16.7.6 | |
| Autoloading py-numpy/1.19.4 | |
| Autoloading py-mpi4py/3.0.3 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| Autoloading py-h5py/3.1.0 | |
| Autoloading hdf5/1.10.7 | |
| [32;1m$ echo "Returning the number of failed builds, ${num_failures}"[0;m | |
| Returning the number of failed builds, 0 | |
| [32;1m$ exit ${num_failures}[0;m | |
| section_end:1638198372:step_script [0Ksection_start:1638198372:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache nmodl-intel-5...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=285294 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache/: found 1200 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/nmodl-intel-5[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1638198393:archive_cache [0Ksection_start:1638198393:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=285447 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99601 responseStatus[0;m=201 Created token[0;m=MX5ySE1h | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=285469 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99601 responseStatus[0;m=201 Created token[0;m=MX5ySE1h | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=285491 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99601 responseStatus[0;m=201 Created token[0;m=MX5ySE1h | |
| section_end:1638198395:upload_artifacts_on_success [0Ksection_start:1638198395:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638198395:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| ! |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197429:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197429:resolve_secrets [0Ksection_start:1638197429:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor551431165, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99600 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99600 | |
| A slurm job will be created with name GL_J99600_PROD_P112_CP0_C1 | |
| Job parameters: memory=512M, cpus_per_task=1, duration=10:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94183 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638197443:prepare_executor [0Ksection_start:1638197443:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i4n0 via bbpv1.epfl.ch... | |
| section_end:1638197445:prepare_script [0Ksection_start:1638197445:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197446:get_sources [0Ksection_start:1638197446:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ touch spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${PARSE_GITHUB_PR_DESCRIPTIONS}" == "true" && "${CI_PIPELINE_SOURCE}" == "external_pull_request_event" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| from __future__ import print_function | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print('SPACK_PACKAGE_REF_' + m.group(1).lower() + '=' + ref_type + '="' + m.group(3) + '"') | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ python parse_description.py > spack_clone_variables.env[0;m | |
| [32;1m$ cat spack_clone_variables.env[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ echo Using ${PWD} as a working directory common to the whole pipeline...[0;m | |
| Using /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99600/_ as a working directory common to the whole pipeline... | |
| [32;1m$ SPACK_BRANCH_PARSED=$(sed -n -e "s/^SPACK_PACKAGE_REF_spack=branch=\(['\"]\)\([^\1]\+\)\1/\2/p" spack_clone_variables.env)[0;m | |
| [32;1m$ SPACK_BRANCH=${SPACK_BRANCH_PARSED:-$SPACK_BRANCH}[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ git clone --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Checking out files: 24% (1901/7697) Checking out files: 25% (1925/7697) Checking out files: 26% (2002/7697) Checking out files: 27% (2079/7697) Checking out files: 28% (2156/7697) Checking out files: 29% (2233/7697) Checking out files: 30% (2310/7697) Checking out files: 31% (2387/7697) Checking out files: 32% (2464/7697) Checking out files: 33% (2541/7697) Checking out files: 34% (2617/7697) Checking out files: 35% (2694/7697) Checking out files: 36% (2771/7697) Checking out files: 37% (2848/7697) Checking out files: 38% (2925/7697) Checking out files: 39% (3002/7697) Checking out files: 40% (3079/7697) Checking out files: 41% (3156/7697) Checking out files: 42% (3233/7697) Checking out files: 43% (3310/7697) Checking out files: 44% (3387/7697) Checking out files: 44% (3455/7697) Checking out files: 45% (3464/7697) Checking out files: 46% (3541/7697) Checking out files: 47% (3618/7697) Checking out files: 48% (3695/7697) Checking out files: 49% (3772/7697) Checking out files: 50% (3849/7697) Checking out files: 51% (3926/7697) Checking out files: 52% (4003/7697) Checking out files: 53% (4080/7697) Checking out files: 54% (4157/7697) Checking out files: 55% (4234/7697) Checking out files: 56% (4311/7697) Checking out files: 57% (4388/7697) Checking out files: 58% (4465/7697) Checking out files: 59% (4542/7697) Checking out files: 60% (4619/7697) Checking out files: 61% (4696/7697) Checking out files: 62% (4773/7697) Checking out files: 62% (4793/7697) Checking out files: 63% (4850/7697) Checking out files: 64% (4927/7697) Checking out files: 65% (5004/7697) Checking out files: 66% (5081/7697) Checking out files: 67% (5157/7697) Checking out files: 68% (5234/7697) Checking out files: 69% (5311/7697) Checking out files: 70% (5388/7697) Checking out files: 71% (5465/7697) Checking out files: 72% (5542/7697) Checking out files: 73% (5619/7697) Checking out files: 73% (5647/7697) Checking out files: 74% (5696/7697) Checking out files: 75% (5773/7697) Checking out files: 76% (5850/7697) Checking out files: 77% (5927/7697) Checking out files: 78% (6004/7697) Checking out files: 79% (6081/7697) Checking out files: 80% (6158/7697) Checking out files: 81% (6235/7697) Checking out files: 82% (6312/7697) Checking out files: 83% (6389/7697) Checking out files: 84% (6466/7697) Checking out files: 85% (6543/7697) Checking out files: 86% (6620/7697) Checking out files: 87% (6697/7697) Checking out files: 87% (6714/7697) Checking out files: 88% (6774/7697) Checking out files: 89% (6851/7697) Checking out files: 90% (6928/7697) Checking out files: 91% (7005/7697) Checking out files: 92% (7082/7697) Checking out files: 93% (7159/7697) Checking out files: 94% (7236/7697) Checking out files: 95% (7313/7697) Checking out files: 96% (7390/7697) Checking out files: 97% (7467/7697) Checking out files: 98% (7544/7697) Checking out files: 99% (7621/7697) Checking out files: 99% (7631/7697) Checking out files: 100% (7697/7697) Checking out files: 100% (7697/7697), done. | |
| [32;1m$ cp /gpfs/bbp.cscs.ch/ssd/apps/hpc/jenkins/config/*.yaml spack/etc/spack[0;m | |
| [32;1m$ SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ spack config get config[0;m | |
| config: | |
| install_tree: | |
| projections: | |
| all: ${ARCHITECTURE}/${COMPILERNAME}-${COMPILERVER}/${PACKAGE}-${VERSION}-${HASH:6} | |
| root: $spack/opt/spack | |
| build_jobs: 36 | |
| ccache: true | |
| template_dirs: | |
| - $spack/share/spack/templates | |
| # Locations where different types of modules should be installed. | |
| module_roots: | |
| tcl: $spack/share/spack/modules | |
| lmod: $spack/share/spack/lmod | |
| build_stage: | |
| - $tempdir/$user/spack-stage | |
| - ~/.spack/stage | |
| # - $spack/var/spack/stage | |
| # Directory in which to run tests and store test results. | |
| # Tests will be stored in directories named by date/time and package | |
| # name/hash. | |
| test_stage: ~/.spack/test | |
| source_cache: $spack/var/spack/cache | |
| misc_cache: ~/.spack/cache | |
| connect_timeout: 10 | |
| verify_ssl: true | |
| suppress_gpg_warnings: false | |
| install_missing_compilers: false | |
| checksum: true | |
| dirty: false | |
| build_language: C | |
| locks: true | |
| concretizer: original | |
| db_lock_timeout: 300 | |
| package_lock_timeout: | |
| shared_linking: rpath | |
| allow_sgid: true | |
| debug: false | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ if [[ "${CI_PIPELINE_SOURCE}" == "pipeline" ]]; then[0;m | |
| section_end:1638197460:step_script [0Ksection_start:1638197460:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=278644 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99600 responseStatus[0;m=201 Created token[0;m=3MyLTc3i | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=278658 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=99600 responseStatus[0;m=201 Created token[0;m=3MyLTc3i | |
| section_end:1638197461:upload_artifacts_on_success [0Ksection_start:1638197461:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638197462:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197684:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197684:resolve_secrets [0Ksection_start:1638197684:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor254411683, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99610 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99610 | |
| A slurm job will be created with name GL_J99610_PROD_P112_CP4_C5 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 94197 | |
| job state: R | |
| section_end:1638197686:prepare_executor [0Ksection_start:1638197686:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u13.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1638197691:prepare_script [0Ksection_start:1638197691:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197692:get_sources [0Ksection_start:1638197692:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:gpu (99606)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=23903 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99606 responseStatus[0;m=200 OK token[0;m=yGMmnvvw | |
| section_end:1638197693:download_artifacts [0Ksection_start:1638197693:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n19 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211129-1456 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #2: interleave_info_constructor_test ....... Passed 1.33 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/18 Test #1: cmd_interface_test ..................... Passed 1.51 sec | |
| 3/18 Test #3: alignment_test ......................... Passed 1.64 sec | |
| Start 8: ring_multisend_TEST | |
| 4/18 Test #4: queuing_test ........................... Passed 1.78 sec | |
| 5/18 Test #5: lfp_test ............................... Passed 2.00 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 37.75 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #9: ring_spike_buffer_TEST ................. Passed 50.55 sec | |
| Start 11: ring_permute2_TEST | |
| 8/18 Test #7: ring_binqueue_TEST ..................... Passed 51.45 sec | |
| Start 12: ring_gap_TEST | |
| 9/18 Test #8: ring_multisend_TEST .................... Passed 51.37 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #10: ring_permute1_TEST ..................... Passed 20.23 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 69.43 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #12: ring_gap_TEST ..........................***Timeout 1500.05 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 d86aefa (2021-11-29 15:44:45 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 212.9805, Min 212.7891, Avg 212.8164 | |
| Memory (MBs) : After MPI_Init : Max 212.9805, Min 212.7891, Avg 212.8164 | |
| Memory (MBs) : Before nrn_setup : Max 213.1836, Min 213.0625, Avg 213.0776 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 0.73 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 213.3906, Min 213.0859, Avg 213.1465 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o/tests/integration/ring_gap | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 213.3906, Min 213.0859, Avg 213.1465 | |
| Memory (MBs) : After nrn_finitialize : Max 279.7188, Min 213.2500, Avg 229.8535 | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #13: ring_gap_binqueue_TEST .................***Timeout 1500.14 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 d86aefa (2021-11-29 15:44:45 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 212.9805, Min 212.7891, Avg 212.8159 | |
| Memory (MBs) : After MPI_Init : Max 212.9805, Min 212.7891, Avg 212.8159 | |
| Memory (MBs) : Before nrn_setup : Max 213.1758, Min 213.0703, Avg 213.0835 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.23 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 213.3828, Min 213.0938, Avg 213.1528 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=true | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99606/_/spack-build/spack-stage-coreneuron-develop-d5jp63omt63hmfz46ab5b5um2wtosys4/spack-build-d5jp63o/tests/integration/ring_gap_binqueue | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 213.3828, Min 213.0938, Avg 213.1528 | |
| Memory (MBs) : After nrn_finitialize : Max 279.7031, Min 213.2617, Avg 229.8608 | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 14/18 Test #14: ring_gap_multisend_TEST ................ Passed 1497.82 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST ................. Passed 1487.82 sec | |
| 16/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 72.93 sec | |
| 17/18 Test #16: ring_gap_permute2_TEST ................. Passed 195.62 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 192.76 sec | |
| 89% tests passed, 2 tests failed out of 18 | |
| Total Test time (real) = 1748.60 sec | |
| The following tests FAILED: | |
| 12 - ring_gap_TEST (Timeout) | |
| 13 - ring_gap_binqueue_TEST (Timeout) | |
| Errors while running CTest | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| srun: error: ldir01u13: task 0: Exited with exit code 1 | |
| section_end:1638199519:step_script [0Ksection_start:1638199519:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=48506 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 8 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99610 responseStatus[0;m=201 Created token[0;m=ErALjQ7g | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=48537 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99610 responseStatus[0;m=201 Created token[0;m=ErALjQ7g | |
| section_end:1638199520:upload_artifacts_on_failure [0Ksection_start:1638199520:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638199521:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638197663:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638197663:resolve_secrets [0Ksection_start:1638197663:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor375811133, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99608 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99608 | |
| A slurm job will be created with name GL_J99608_PROD_P112_CP3_C4 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94194 | |
| job state: R | |
| section_end:1638197665:prepare_executor [0Ksection_start:1638197665:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n19 via bbpv1.epfl.ch... | |
| section_end:1638197668:prepare_script [0Ksection_start:1638197668:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638197669:get_sources [0Ksection_start:1638197669:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:intel (99604)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=164074 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99604 responseStatus[0;m=200 OK token[0;m=ENV9BvMs | |
| section_end:1638197670:download_artifacts [0Ksection_start:1638197670:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n20 | |
| Build name: Linux-icpc | |
| Create new tag: 20211129-1455 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99604/_/spack-build/spack-stage-coreneuron-develop-aevgkbdozl3htdtjhrd5w65n3c6mb2jh/spack-build-aevgkbd | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #1: cmd_interface_test ................. Passed 2.03 sec | |
| 2/17 Test #3: alignment_test ..................... Passed 2.49 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #4: queuing_test ....................... Passed 2.69 sec | |
| 4/17 Test #2: interleave_info_constructor_test ... Passed 2.90 sec | |
| Start 8: ring_multisend_TEST | |
| 5/17 Test #5: lfp_test ........................... Passed 3.08 sec | |
| 6/17 Test #17: reporting_1 ........................ Passed 6.82 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/17 Test #6: ring_TEST .......................... Passed 7.61 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #8: ring_multisend_TEST ................ Passed 5.04 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #7: ring_binqueue_TEST ................. Passed 6.47 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.09 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #10: ring_permute1_TEST ................. Passed 2.65 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 2.61 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #13: ring_gap_binqueue_TEST ............. Passed 6.07 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #14: ring_gap_multisend_TEST ............ Passed 1293.58 sec | |
| 15/17 Test #12: ring_gap_TEST ...................... Passed 1375.77 sec | |
| 16/17 Test #16: ring_gap_permute2_TEST ............. Passed 1404.38 sec | |
| 17/17 Test #15: ring_gap_permute1_TEST ............. Passed 1409.97 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 1420.57 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1638199128:step_script [0Ksection_start:1638199128:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=235484 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99608 responseStatus[0;m=201 Created token[0;m=9yDXSE6a | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=235523 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99608 responseStatus[0;m=201 Created token[0;m=9yDXSE6a | |
| section_end:1638199130:upload_artifacts_on_success [0Ksection_start:1638199130:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638199131:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198884:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198884:resolve_secrets [0Ksection_start:1638198884:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor021192331, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99609 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99609 | |
| A slurm job will be created with name GL_J99609_PROD_P112_CP1_C3 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 94325 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638198899:prepare_executor [0Ksection_start:1638198899:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u13.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1638198908:prepare_script [0Ksection_start:1638198908:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198909:get_sources [0Ksection_start:1638198909:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:gpu (99605)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=42837 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99605 responseStatus[0;m=200 OK token[0;m=MwkCnxEx | |
| section_end:1638198910:download_artifacts [0Ksection_start:1638198910:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n19 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211129-1515 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| 1/18 Test #1: cmd_interface_test ..................... Passed 1.54 sec | |
| Start 7: ring_binqueue_TEST | |
| 2/18 Test #4: queuing_test ........................... Passed 1.68 sec | |
| 3/18 Test #2: interleave_info_constructor_test ....... Passed 1.84 sec | |
| Start 8: ring_multisend_TEST | |
| 4/18 Test #3: alignment_test ......................... Passed 2.02 sec | |
| 5/18 Test #5: lfp_test ............................... Passed 2.30 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/18 Test #6: ring_TEST .............................. Passed 16.25 sec | |
| Start 10: ring_permute1_TEST | |
| 7/18 Test #7: ring_binqueue_TEST ..................... Passed 33.13 sec | |
| Start 11: ring_permute2_TEST | |
| 8/18 Test #9: ring_spike_buffer_TEST ................. Passed 33.33 sec | |
| Start 12: ring_gap_TEST | |
| 9/18 Test #8: ring_multisend_TEST .................... Passed 33.93 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 10/18 Test #10: ring_permute1_TEST ..................... Passed 24.00 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 11/18 Test #11: ring_permute2_TEST ..................... Passed 52.59 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 12/18 Test #12: ring_gap_TEST ..........................***Timeout 1500.05 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 d86aefa (2021-11-29 15:44:45 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 212.8672, Min 212.6797, Avg 212.7065 | |
| Memory (MBs) : After MPI_Init : Max 212.8672, Min 212.6797, Avg 212.7065 | |
| Memory (MBs) : Before nrn_setup : Max 213.1914, Min 213.0625, Avg 213.0786 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.43 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 213.2109, Min 213.0820, Avg 213.0981 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 213.3945, Min 213.0820, Avg 213.1436 | |
| Memory (MBs) : After nrn_finitialize : Max 279.7930, Min 213.2539, Avg 229.8755 | |
| Start 16: ring_gap_permute2_TEST | |
| 13/18 Test #13: ring_gap_binqueue_TEST .................***Timeout 1500.09 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 d86aefa (2021-11-29 15:44:45 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 212.8711, Min 212.6797, Avg 212.7070 | |
| Memory (MBs) : After MPI_Init : Max 212.8711, Min 212.6797, Avg 212.7070 | |
| Memory (MBs) : Before nrn_setup : Max 213.1797, Min 213.0586, Avg 213.0737 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.60 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 213.1992, Min 213.0781, Avg 213.0933 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=true | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap_binqueue | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 213.3828, Min 213.0781, Avg 213.1387 | |
| Memory (MBs) : After nrn_finitialize : Max 279.7891, Min 213.2500, Avg 229.8711 | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 14/18 Test #14: ring_gap_multisend_TEST ................***Timeout 1500.05 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 d86aefa (2021-11-29 15:44:45 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 212.8711, Min 212.6797, Avg 212.7070 | |
| Memory (MBs) : After MPI_Init : Max 212.8711, Min 212.6797, Avg 212.7070 | |
| Memory (MBs) : Before nrn_setup : Max 213.1797, Min 213.0586, Avg 213.0737 | |
| WARNING : GPU execution requires --cell-permute type 1 or 2. Setting it to 1. | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 2.89 seconds | |
| Model size : 93.34 kB | |
| Memory (MBs) : After nrn_setup : Max 213.3711, Min 213.0781, Avg 213.1362 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=0 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=true | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap_multisend | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 213.3711, Min 213.0781, Avg 213.1362 | |
| Memory (MBs) : After nrn_finitialize : Max 279.7695, Min 213.2383, Avg 229.8599 | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 15/18 Test #15: ring_gap_permute1_TEST .................***Timeout 1500.05 sec | |
| num_mpi=8 | |
| Info : 4 GPUs shared by 8 ranks per node | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2020 | |
| Version : 1.0 d86aefa (2021-11-29 15:44:45 +0100) | |
| Additional mechanisms from files | |
| exp2syn.mod expsyn.mod halfgap.mod hh.mod netstim.mod passive.mod pattern.mod stim.mod svclmp.mod | |
| Memory (MBs) : After mk_mech : Max 212.8906, Min 212.6797, Avg 212.7095 | |
| Memory (MBs) : After MPI_Init : Max 212.8906, Min 212.6797, Avg 212.7095 | |
| Memory (MBs) : Before nrn_setup : Max 213.1797, Min 213.0586, Avg 213.0737 | |
| Model uses gap junctions | |
| Info : The number of input datasets are less than ranks, some ranks will be idle! | |
| Setup Done : 1.32 seconds | |
| Model size : 93.06 kB | |
| Memory (MBs) : After nrn_setup : Max 213.1992, Min 213.0781, Avg 213.0933 | |
| GENERAL PARAMETERS | |
| --mpi=true | |
| --mpi-lib= | |
| --gpu=true | |
| --dt=0.025 | |
| --tstop=100 | |
| GPU | |
| --nwarp=0 | |
| --cell-permute=1 | |
| --cuda-interface=false | |
| INPUT PARAMETERS | |
| --voltage=-65 | |
| --seed=-1 | |
| --datpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-src/tests/integration/ring_gap | |
| --filesdat=files.dat | |
| --pattern= | |
| --report-conf= | |
| --restore= | |
| PARALLEL COMPUTATION PARAMETERS | |
| --threading=false | |
| --skip_mpi_finalize=false | |
| SPIKE EXCHANGE | |
| --ms_phases=2 | |
| --ms_subintervals=2 | |
| --multisend=false | |
| --spk_compress=0 | |
| --binqueue=false | |
| CONFIGURATION | |
| --spikebuf=100000 | |
| --prcellgid=-1 | |
| --forwardskip=0 | |
| --celsius=6.3 | |
| --mindelay=10 | |
| --report-buffer-size=4 | |
| OUTPUT PARAMETERS | |
| --dt_io=0.1 | |
| --outpath=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99605/_/spack-build/spack-stage-coreneuron-develop-zlwgeoedcsxjuxmsxmqszgt6asxykrym/spack-build-zlwgeoe/tests/integration/ring_gap_permute1 | |
| --checkpoint= | |
| Start time (t) = 0 | |
| Memory (MBs) : After mk_spikevec_buffer : Max 213.3828, Min 213.0781, Avg 213.1387 | |
| Memory (MBs) : After nrn_finitialize : Max 279.6250, Min 213.1016, Avg 229.7202 | |
| 16/18 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 90.59 sec | |
| 17/18 Test #16: ring_gap_permute2_TEST ................. Passed 288.46 sec | |
| 18/18 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 283.88 sec | |
| 78% tests passed, 4 tests failed out of 18 | |
| Total Test time (real) = 1824.23 sec | |
| The following tests FAILED: | |
| 12 - ring_gap_TEST (Timeout) | |
| 13 - ring_gap_binqueue_TEST (Timeout) | |
| 14 - ring_gap_multisend_TEST (Timeout) | |
| 15 - ring_gap_permute1_TEST (Timeout) | |
| Errors while running CTest | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| srun: error: ldir01u13: task 0: Exited with exit code 1 | |
| section_end:1638200768:step_script [0Ksection_start:1638200768:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=63422 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 8 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99609 responseStatus[0;m=201 Created token[0;m=No9AVDKd | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=63452 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99609 responseStatus[0;m=201 Created token[0;m=No9AVDKd | |
| section_end:1638200769:upload_artifacts_on_failure [0Ksection_start:1638200769:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638200770:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198636:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198636:resolve_secrets [0Ksection_start:1638198636:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor663482621, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99607 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99607 | |
| A slurm job will be created with name GL_J99607_PROD_P112_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94309 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638198656:prepare_executor [0Ksection_start:1638198656:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n20 via bbpv1.epfl.ch... | |
| section_end:1638198659:prepare_script [0Ksection_start:1638198659:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198660:get_sources [0Ksection_start:1638198660:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron+nmodl:intel (99603)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=150133 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99603 responseStatus[0;m=200 OK token[0;m=USoRFWfN | |
| section_end:1638198661:download_artifacts [0Ksection_start:1638198661:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i4n0 | |
| Build name: Linux-icpc | |
| Create new tag: 20211129-1511 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99603/_/spack-build/spack-stage-coreneuron-develop-cwjs4t3f4wyl5jax3fb2obxbvjopwgn3/spack-build-cwjs4t3 | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #3: alignment_test ..................... Passed 2.31 sec | |
| 2/17 Test #2: interleave_info_constructor_test ... Passed 2.57 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #1: cmd_interface_test ................. Passed 2.71 sec | |
| 4/17 Test #4: queuing_test ....................... Passed 2.76 sec | |
| Start 8: ring_multisend_TEST | |
| 5/17 Test #5: lfp_test ........................... Passed 2.92 sec | |
| 6/17 Test #17: reporting_1 ........................ Passed 6.00 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/17 Test #6: ring_TEST .......................... Passed 6.21 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 4.76 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 5.04 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 2.30 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #10: ring_permute1_TEST ................. Passed 2.89 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 8.40 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #15: ring_gap_permute1_TEST ............. Passed 1330.20 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #12: ring_gap_TEST ...................... Passed 1423.17 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 1465.90 sec | |
| 16/17 Test #13: ring_gap_binqueue_TEST ............. Passed 1474.56 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 136.88 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 1483.01 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1638200186:step_script [0Ksection_start:1638200186:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=196772 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99607 responseStatus[0;m=201 Created token[0;m=t7xJ9VBQ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=196820 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99607 responseStatus[0;m=201 Created token[0;m=t7xJ9VBQ | |
| section_end:1638200188:upload_artifacts_on_success [0Ksection_start:1638200188:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638200189:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198462:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198462:resolve_secrets [0Ksection_start:1638198462:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor079341918, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99618 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99618 | |
| A slurm job will be created with name GL_J99618_PROD_P112_CP2_C2 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 94303 | |
| job state: R | |
| section_end:1638198463:prepare_executor [0Ksection_start:1638198463:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u13.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1638198464:prepare_script [0Ksection_start:1638198464:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198465:get_sources [0Ksection_start:1638198465:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:gpu (99614)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=32838 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99614 responseStatus[0;m=200 OK token[0;m=YXbDhcCk | |
| section_end:1638198466:download_artifacts [0Ksection_start:1638198466:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n19 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211129-1508 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99614/_/spack-build/spack-stage-neuron-develop-vkogqddlipn6wfzq2o4mkbt36t7uknzy/spack-build-vkogqdd | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 52: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 69: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 73: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 1/162 Test #59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.43 sec | |
| Start 87: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/162 Test #63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.47 sec | |
| Start 125: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| 3/162 Test #69: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 2.52 sec | |
| Start 129: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 4/162 Test #73: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.54 sec | |
| Start 135: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| 5/162 Test #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 3.86 sec | |
| Start 79: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| 6/162 Test #52: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 3.90 sec | |
| Start 83: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 7/162 Test #87: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 1.74 sec | |
| Start 139: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 8/162 Test #125: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 1.73 sec | |
| Start 44: external_ringtest::neuron | |
| 9/162 Test #129: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 1.70 sec | |
| Start 55: testcorenrn_bbcore::neuron | |
| 10/162 Test #135: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 1.70 sec | |
| Start 56: testcorenrn_bbcore::coreneuron_gpu_online | |
| 11/162 Test #79: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 1.84 sec | |
| Start 89: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 12/162 Test #83: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 1.84 sec | |
| Start 95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 13/162 Test #44: external_ringtest::neuron .......................................... Passed 1.56 sec | |
| Start 57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 14/162 Test #55: testcorenrn_bbcore::neuron ......................................... Passed 1.83 sec | |
| Start 58: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 15/162 Test #139: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 1.89 sec | |
| Start 60: testcorenrn_bbcore::coreneuron_cpu_online | |
| 16/162 Test #56: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 2.65 sec | |
| Start 61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 17/162 Test #89: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 1.77 sec | |
| Start 99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 18/162 Test #95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 1.86 sec | |
| Start 115: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 19/162 Test #60: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 3.22 sec | |
| Start 62: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 20/162 Test #58: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 3.28 sec | |
| Start 65: testcorenrn_deriv::neuron | |
| 21/162 Test #57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 3.92 sec | |
| Start 66: testcorenrn_deriv::coreneuron_gpu_online | |
| 22/162 Test #99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.89 sec | |
| Start 119: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 23/162 Test #115: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 3.03 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 24/162 Test #61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 4.24 sec | |
| Start 67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 25/162 Test #62: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.85 sec | |
| Start 68: testcorenrn_deriv::coreneuron_gpu_offline | |
| 26/162 Test #65: testcorenrn_deriv::neuron .......................................... Passed 1.88 sec | |
| Start 70: testcorenrn_deriv::coreneuron_cpu_online | |
| 27/162 Test #119: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.29 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi | |
| 28/162 Test #66: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 3.53 sec | |
| Start 71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 29/162 Test #70: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.34 sec | |
| Start 72: testcorenrn_deriv::coreneuron_cpu_offline | |
| 30/162 Test #68: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 4.19 sec | |
| Start 86: testcorenrn_patstim::coreneuron_gpu_offline | |
| 31/162 Test #67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 4.99 sec | |
| Start 121: testcorenrn_conc::neuron | |
| 32/162 Test #72: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.80 sec | |
| Start 122: testcorenrn_conc::coreneuron_gpu_online | |
| 33/162 Test #71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.24 sec | |
| Start 123: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 34/162 Test #121: testcorenrn_conc::neuron ........................................... Passed 1.85 sec | |
| Start 124: testcorenrn_conc::coreneuron_gpu_offline | |
| 35/162 Test #86: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 2.66 sec | |
| Start 126: testcorenrn_conc::coreneuron_cpu_online | |
| 36/162 Test #122: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 5.20 sec | |
| Start 127: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 37/162 Test #126: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 4.44 sec | |
| Start 128: testcorenrn_conc::coreneuron_cpu_offline | |
| 38/162 Test #45: external_ringtest::neuron_mpi ...................................... Passed 12.56 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi_offline | |
| 39/162 Test #124: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 5.57 sec | |
| Start 131: testcorenrn_kin::neuron | |
| 40/162 Test #123: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 6.57 sec | |
| Start 132: testcorenrn_kin::coreneuron_gpu_online | |
| 41/162 Test #128: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 2.33 sec | |
| Start 133: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 42/162 Test #131: testcorenrn_kin::neuron ............................................ Passed 1.85 sec | |
| Start 134: testcorenrn_kin::coreneuron_gpu_offline | |
| 43/162 Test #127: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 4.01 sec | |
| Start 136: testcorenrn_kin::coreneuron_cpu_online | |
| 44/162 Test #46: external_ringtest::coreneuron_cpu_mpi .............................. Passed 13.10 sec | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_threads | |
| 45/162 Test #47: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 3.82 sec | |
| Start 50: external_ringtest::coreneuron_gpu_mpi | |
| 46/162 Test #132: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 4.59 sec | |
| Start 137: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 47/162 Test #136: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 3.81 sec | |
| Start 138: testcorenrn_kin::coreneuron_cpu_offline | |
| 48/162 Test #134: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 5.52 sec | |
| Start 144: channel_benchmark_hippo::neuron | |
| 49/162 Test #133: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 6.26 sec | |
| Start 145: channel_benchmark_hippo::coreneuron_gpu_online | |
| 50/162 Test #138: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 8.28 sec | |
| Start 146: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 51/162 Test #49: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 12.57 sec | |
| Start 51: external_ringtest::coreneuron_gpu_mpi_offline | |
| 52/162 Test #137: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 10.65 sec | |
| Start 147: channel_benchmark_hippo::coreneuron_cpu_online | |
| 53/162 Test #50: external_ringtest::coreneuron_gpu_mpi .............................. Passed 20.31 sec | |
| Start 53: external_ringtest::coreneuron_gpu_mpi_threads | |
| 54/162 Test #51: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 18.62 sec | |
| Start 75: testcorenrn_gf::neuron | |
| 55/162 Test #75: testcorenrn_gf::neuron ............................................. Passed 6.27 sec | |
| Start 76: testcorenrn_gf::coreneuron_gpu_online | |
| 56/162 Test #53: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 29.97 sec | |
| Start 77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 57/162 Test #76: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 23.23 sec | |
| Start 78: testcorenrn_gf::coreneuron_gpu_offline | |
| 58/162 Test #78: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 20.46 sec | |
| Start 80: testcorenrn_gf::coreneuron_cpu_online | |
| 59/162 Test #77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 30.36 sec | |
| Start 81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 60/162 Test #145: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 85.15 sec | |
| Start 148: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 61/162 Test #144: channel_benchmark_hippo::neuron .................................... Passed 90.74 sec | |
| Start 150: channel_benchmark_sscx::neuron | |
| 62/162 Test #80: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 18.49 sec | |
| Start 82: testcorenrn_gf::coreneuron_cpu_offline | |
| 63/162 Test #146: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 90.88 sec | |
| Start 151: channel_benchmark_sscx::coreneuron_gpu_online | |
| 64/162 Test #81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 22.54 sec | |
| Start 85: testcorenrn_patstim::neuron | |
| 65/162 Test #147: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 92.51 sec | |
| Start 152: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 66/162 Test #85: testcorenrn_patstim::neuron ........................................ Passed 3.52 sec | |
| Start 88: testcorenrn_patstim::coreneuron_cpu_offline | |
| 67/162 Test #82: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 8.43 sec | |
| Start 91: testcorenrn_vecplay::neuron | |
| 68/162 Test #91: testcorenrn_vecplay::neuron ........................................ Passed 2.58 sec | |
| Start 92: testcorenrn_vecplay::coreneuron_gpu_online | |
| 69/162 Test #88: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 12.95 sec | |
| Start 93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 70/162 Test #92: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 25.50 sec | |
| Start 94: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 71/162 Test #93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 30.27 sec | |
| Start 96: testcorenrn_vecplay::coreneuron_cpu_online | |
| 72/162 Test #94: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 18.68 sec | |
| Start 97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 73/162 Test #96: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 19.73 sec | |
| Start 98: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 74/162 Test #97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 22.98 sec | |
| Start 111: testcorenrn_watch::neuron | |
| 75/162 Test #98: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 8.94 sec | |
| Start 112: testcorenrn_watch::coreneuron_gpu_online | |
| 76/162 Test #111: testcorenrn_watch::neuron .......................................... Passed 3.37 sec | |
| Start 113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 77/162 Test #148: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 91.49 sec | |
| Start 153: channel_benchmark_sscx::coreneuron_cpu_online | |
| 78/162 Test #151: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 85.18 sec | |
| Start 154: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 79/162 Test #150: channel_benchmark_sscx::neuron ..................................... Passed 92.13 sec | |
| Start 1: testneuron | |
| 80/162 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 81/162 Test #2: ringtest ........................................................... Passed 0.27 sec | |
| Start 3: connect_dend | |
| 82/162 Test #3: connect_dend ....................................................... Passed 0.15 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 83/162 Test #152: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 83.32 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 84/162 Test #112: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 14.43 sec | |
| Start 114: testcorenrn_watch::coreneuron_gpu_offline | |
| 85/162 Test #4: pynrn_tests::basic_tests ........................................... Passed 8.42 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 86/162 Test #113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 20.63 sec | |
| Start 116: testcorenrn_watch::coreneuron_cpu_online | |
| 87/162 Test #114: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 13.28 sec | |
| Start 117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 88/162 Test #116: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 19.27 sec | |
| Start 118: testcorenrn_watch::coreneuron_cpu_offline | |
| 89/162 Test #117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 16.80 sec | |
| Start 141: testcorenrn_netstimdirect::direct_netstimdirect | |
| 90/162 Test #118: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 10.40 sec | |
| Start 142: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 91/162 Test #141: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 12.43 sec | |
| Start 7: parallel_tests | |
| Start 8: parallel_partrans | |
| 92/162 Test #153: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 55.00 sec | |
| Start 9: parallel_bas | |
| 93/162 Test #154: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 50.77 sec | |
| Start 10: coreneuron_modtests::fornetcon_py_cpu | |
| 94/162 Test #142: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 7.83 sec | |
| Start 11: coreneuron_modtests::direct_py_cpu | |
| Start 12: coreneuron_modtests::direct_hoc_cpu | |
| 95/162 Test #8: parallel_partrans .................................................. Passed 6.12 sec | |
| Start 13: coreneuron_modtests::spikes_py_cpu | |
| 96/162 Test #7: parallel_tests ..................................................... Passed 6.23 sec | |
| Start 14: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 97/162 Test #12: coreneuron_modtests::direct_hoc_cpu ................................ Passed 5.73 sec | |
| Start 15: coreneuron_modtests::fast_imem_py_cpu | |
| 98/162 Test #10: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 7.31 sec | |
| Start 16: coreneuron_modtests::datareturn_py_cpu | |
| 99/162 Test #11: coreneuron_modtests::direct_py_cpu ................................. Passed 6.84 sec | |
| Start 17: coreneuron_modtests::test_units_py_cpu | |
| 100/162 Test #9: parallel_bas ....................................................... Passed 10.29 sec | |
| Start 18: coreneuron_modtests::test_netmove_py_cpu | |
| 101/162 Test #15: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 2.59 sec | |
| Start 19: coreneuron_modtests::test_watchrange_py_cpu | |
| 102/162 Test #14: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 5.51 sec | |
| Start 20: coreneuron_modtests::test_psolve_py_cpu | |
| 103/162 Test #13: coreneuron_modtests::spikes_py_cpu ................................. Passed 6.21 sec | |
| Start 21: coreneuron_modtests::test_natrans_py_cpu | |
| 104/162 Test #17: coreneuron_modtests::test_units_py_cpu ............................. Passed 3.89 sec | |
| Start 25: coreneuron_modtests::direct_py_gpu | |
| 105/162 Test #16: coreneuron_modtests::datareturn_py_cpu ............................. Passed 6.06 sec | |
| Start 26: coreneuron_modtests::direct_hoc_gpu | |
| 106/162 Test #19: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 4.60 sec | |
| Start 27: coreneuron_modtests::spikes_py_gpu | |
| 107/162 Test #21: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 3.95 sec | |
| Start 28: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 108/162 Test #20: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 4.63 sec | |
| Start 29: coreneuron_modtests::fast_imem_py_gpu | |
| 109/162 Test #29: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 2.33 sec | |
| Start 30: coreneuron_modtests::datareturn_py_gpu | |
| 110/162 Test #25: coreneuron_modtests::direct_py_gpu ................................. Passed 5.90 sec | |
| Start 31: coreneuron_modtests::test_units_py_gpu | |
| 111/162 Test #26: coreneuron_modtests::direct_hoc_gpu ................................ Passed 4.06 sec | |
| Start 32: coreneuron_modtests::test_netmove_py_gpu | |
| 112/162 Test #18: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 9.66 sec | |
| Start 33: coreneuron_modtests::test_watchrange_py_gpu | |
| 113/162 Test #28: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 5.37 sec | |
| Start 34: coreneuron_modtests::test_psolve_py_gpu | |
| 114/162 Test #27: coreneuron_modtests::spikes_py_gpu ................................. Passed 8.01 sec | |
| Start 35: coreneuron_modtests::test_natrans_py_gpu | |
| 115/162 Test #31: coreneuron_modtests::test_units_py_gpu ............................. Passed 4.69 sec | |
| Start 39: external_nrntest | |
| 116/162 Test #33: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 6.88 sec | |
| Start 54: external_ringtest::compare_results | |
| 117/162 Test #54: external_ringtest::compare_results ................................. Passed 0.33 sec | |
| Start 64: testcorenrn_bbcore::compare_results | |
| 118/162 Test #64: testcorenrn_bbcore::compare_results ................................ Passed 0.19 sec | |
| Start 74: testcorenrn_deriv::compare_results | |
| 119/162 Test #74: testcorenrn_deriv::compare_results ................................. Passed 0.15 sec | |
| Start 84: testcorenrn_gf::compare_results | |
| 120/162 Test #84: testcorenrn_gf::compare_results .................................... Passed 0.19 sec | |
| Start 90: testcorenrn_patstim::compare_results | |
| 121/162 Test #90: testcorenrn_patstim::compare_results ............................... Passed 0.08 sec | |
| Start 100: testcorenrn_vecplay::compare_results | |
| 122/162 Test #100: testcorenrn_vecplay::compare_results ............................... Passed 0.06 sec | |
| Start 120: testcorenrn_watch::compare_results | |
| 123/162 Test #120: testcorenrn_watch::compare_results ................................. Passed 0.06 sec | |
| Start 130: testcorenrn_conc::compare_results | |
| 124/162 Test #130: testcorenrn_conc::compare_results .................................. Passed 0.08 sec | |
| Start 140: testcorenrn_kin::compare_results | |
| 125/162 Test #140: testcorenrn_kin::compare_results ................................... Passed 0.10 sec | |
| Start 143: testcorenrn_netstimdirect::compare_results | |
| 126/162 Test #143: testcorenrn_netstimdirect::compare_results ......................... Passed 0.10 sec | |
| Start 149: channel_benchmark_hippo::compare_results | |
| 127/162 Test #149: channel_benchmark_hippo::compare_results ........................... Passed 0.06 sec | |
| Start 155: channel_benchmark_sscx::compare_results | |
| 128/162 Test #155: channel_benchmark_sscx::compare_results ............................ Passed 0.13 sec | |
| 129/162 Test #34: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 7.34 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_py_cpu | |
| 130/162 Test #35: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 6.24 sec | |
| 131/162 Test #30: coreneuron_modtests::datareturn_py_gpu ............................. Passed 12.93 sec | |
| Start 23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 132/162 Test #32: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 13.13 sec | |
| 133/162 Test #22: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 3.95 sec | |
| Start 24: coreneuron_modtests::inputpresyn_py_cpu | |
| 134/162 Test #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 8.59 sec | |
| Start 36: coreneuron_modtests::spikes_mpi_py_gpu | |
| 135/162 Test #24: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 7.46 sec | |
| Start 37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 136/162 Test #37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 9.32 sec | |
| Start 38: coreneuron_modtests::inputpresyn_py_gpu | |
| 137/162 Test #36: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 9.75 sec | |
| 138/162 Test #38: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 13.37 sec | |
| Start 105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 139/162 Test #105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 3.61 sec | |
| Start 109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 140/162 Test #109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.61 sec | |
| Start 157: olfactory-bulb-3d::neuron::preparation | |
| 141/162 Test #157: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 159: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 142/162 Test #159: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.02 sec | |
| Start 161: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 143/162 Test #161: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.02 sec | |
| Start 40: reduced_dentate::neuron | |
| 144/162 Test #40: reduced_dentate::neuron ............................................ Passed 32.04 sec | |
| Start 41: reduced_dentate::coreneuron_cpu | |
| 145/162 Test #39: external_nrntest ................................................... Passed 154.03 sec | |
| 146/162 Test #41: reduced_dentate::coreneuron_cpu .................................... Passed 97.17 sec | |
| Start 42: reduced_dentate::coreneuron_gpu | |
| 147/162 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 255.23 sec | |
| 148/162 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 271.89 sec | |
| Start 101: testcorenrn_vecevent::neuron | |
| 149/162 Test #101: testcorenrn_vecevent::neuron ....................................... Passed 1.78 sec | |
| Start 102: testcorenrn_vecevent::coreneuron_gpu_online | |
| 150/162 Test #42: reduced_dentate::coreneuron_gpu .................................... Passed 48.31 sec | |
| Start 103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 151/162 Test #102: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 15.03 sec | |
| Start 104: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 152/162 Test #103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 4.66 sec | |
| Start 106: testcorenrn_vecevent::coreneuron_cpu_online | |
| 153/162 Test #104: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 4.72 sec | |
| Start 107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 154/162 Test #106: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 5.58 sec | |
| Start 108: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 155/162 Test #107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 5.88 sec | |
| Start 156: olfactory-bulb-3d::neuron | |
| 156/162 Test #108: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 2.19 sec | |
| Start 158: olfactory-bulb-3d::coreneuron_gpu_online | |
| 157/162 Test #158: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 72.16 sec | |
| Start 160: olfactory-bulb-3d::coreneuron_cpu_online | |
| 158/162 Test #156: olfactory-bulb-3d::neuron .......................................... Passed 90.73 sec | |
| Start 43: reduced_dentate::compare_results | |
| Start 110: testcorenrn_vecevent::compare_results | |
| 159/162 Test #43: reduced_dentate::compare_results ................................... Passed 0.09 sec | |
| 160/162 Test #110: testcorenrn_vecevent::compare_results .............................. Passed 0.09 sec | |
| 161/162 Test #160: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 44.97 sec | |
| Start 162: olfactory-bulb-3d::compare_results | |
| 162/162 Test #162: olfactory-bulb-3d::compare_results ................................. Passed 0.24 sec | |
| 100% tests passed, 0 tests failed out of 162 | |
| Total Test time (real) = 640.44 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1638199140:step_script [0Ksection_start:1638199140:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=47076 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99618 responseStatus[0;m=201 Created token[0;m=R2YPfyWW | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=47108 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99618 responseStatus[0;m=201 Created token[0;m=R2YPfyWW | |
| section_end:1638199141:upload_artifacts_on_success [0Ksection_start:1638199141:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638199142:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638198495:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638198495:resolve_secrets [0Ksection_start:1638198495:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor705909446, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99616 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99616 | |
| A slurm job will be created with name GL_J99616_PROD_P112_CP5_C6 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94304 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638198510:prepare_executor [0Ksection_start:1638198510:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n19 via bbpv1.epfl.ch... | |
| section_end:1638198513:prepare_script [0Ksection_start:1638198513:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638198514:get_sources [0Ksection_start:1638198514:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:intel (99612)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=208417 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99612 responseStatus[0;m=200 OK token[0;m=4HmtcF3z | |
| section_end:1638198515:download_artifacts [0Ksection_start:1638198515:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n20 | |
| Build name: Linux-icpc | |
| Create new tag: 20211129-1509 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99612/_/spack-build/spack-stage-neuron-develop-mvn7s3za436y6xrhbspwpy7pbewubnvm/spack-build-mvn7s3z | |
| Start 33: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 46: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 52: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 56: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 1/103 Test #46: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.35 sec | |
| Start 80: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/103 Test #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.41 sec | |
| Start 86: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 3/103 Test #52: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.61 sec | |
| Start 62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 4/103 Test #56: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.67 sec | |
| Start 74: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 5/103 Test #33: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 3.30 sec | |
| Start 29: external_ringtest::neuron | |
| Start 36: testcorenrn_bbcore::neuron | |
| 6/103 Test #80: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 1.63 sec | |
| Start 37: testcorenrn_bbcore::coreneuron_cpu_online | |
| 7/103 Test #86: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 1.66 sec | |
| Start 38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 8/103 Test #62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 1.95 sec | |
| Start 30: external_ringtest::neuron_mpi | |
| 9/103 Test #74: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 1.93 sec | |
| Start 31: external_ringtest::coreneuron_cpu_mpi | |
| 10/103 Test #36: testcorenrn_bbcore::neuron ......................................... Passed 1.63 sec | |
| Start 39: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/103 Test #29: external_ringtest::neuron .......................................... Passed 1.93 sec | |
| Start 42: testcorenrn_deriv::neuron | |
| 12/103 Test #37: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 2.08 sec | |
| Start 43: testcorenrn_deriv::coreneuron_cpu_online | |
| 13/103 Test #39: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.91 sec | |
| Start 44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 14/103 Test #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 2.93 sec | |
| Start 45: testcorenrn_deriv::coreneuron_cpu_offline | |
| 15/103 Test #42: testcorenrn_deriv::neuron .......................................... Passed 2.13 sec | |
| Start 76: testcorenrn_conc::neuron | |
| 16/103 Test #45: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.59 sec | |
| Start 77: testcorenrn_conc::coreneuron_cpu_online | |
| 17/103 Test #76: testcorenrn_conc::neuron ........................................... Passed 2.22 sec | |
| Start 78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 18/103 Test #43: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.99 sec | |
| Start 79: testcorenrn_conc::coreneuron_cpu_offline | |
| 19/103 Test #44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.22 sec | |
| Start 82: testcorenrn_kin::neuron | |
| 20/103 Test #30: external_ringtest::neuron_mpi ...................................... Passed 6.76 sec | |
| Start 32: external_ringtest::coreneuron_cpu_mpi_offline | |
| 21/103 Test #79: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.63 sec | |
| Start 83: testcorenrn_kin::coreneuron_cpu_online | |
| 22/103 Test #31: external_ringtest::coreneuron_cpu_mpi .............................. Passed 7.15 sec | |
| Start 34: external_ringtest::coreneuron_cpu_mpi_threads | |
| 23/103 Test #77: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 3.35 sec | |
| Start 84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 24/103 Test #78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 3.05 sec | |
| Start 85: testcorenrn_kin::coreneuron_cpu_offline | |
| 25/103 Test #82: testcorenrn_kin::neuron ............................................ Passed 1.62 sec | |
| Start 91: channel_benchmark_hippo::neuron | |
| 26/103 Test #32: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 2.77 sec | |
| Start 48: testcorenrn_gf::neuron | |
| 27/103 Test #83: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 2.79 sec | |
| Start 92: channel_benchmark_hippo::coreneuron_cpu_online | |
| 28/103 Test #85: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 1.95 sec | |
| Start 93: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 29/103 Test #84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 3.53 sec | |
| Start 95: channel_benchmark_sscx::neuron | |
| 30/103 Test #34: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 5.82 sec | |
| Start 49: testcorenrn_gf::coreneuron_cpu_online | |
| 31/103 Test #48: testcorenrn_gf::neuron ............................................. Passed 6.64 sec | |
| Start 50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 32/103 Test #49: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 10.90 sec | |
| Start 51: testcorenrn_gf::coreneuron_cpu_offline | |
| 33/103 Test #51: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 6.36 sec | |
| Start 54: testcorenrn_patstim::neuron | |
| 34/103 Test #50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 17.76 sec | |
| Start 55: testcorenrn_patstim::coreneuron_cpu_offline | |
| 35/103 Test #54: testcorenrn_patstim::neuron ........................................ Passed 3.71 sec | |
| Start 58: testcorenrn_vecplay::neuron | |
| 36/103 Test #55: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 2.30 sec | |
| Start 59: testcorenrn_vecplay::coreneuron_cpu_online | |
| 37/103 Test #58: testcorenrn_vecplay::neuron ........................................ Passed 3.67 sec | |
| Start 60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 38/103 Test #59: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 6.55 sec | |
| Start 61: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 39/103 Test #61: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 4.47 sec | |
| Start 70: testcorenrn_watch::neuron | |
| 40/103 Test #60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 14.20 sec | |
| Start 71: testcorenrn_watch::coreneuron_cpu_online | |
| 41/103 Test #70: testcorenrn_watch::neuron .......................................... Passed 5.04 sec | |
| Start 72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 42/103 Test #71: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 6.71 sec | |
| Start 73: testcorenrn_watch::coreneuron_cpu_offline | |
| 43/103 Test #73: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.35 sec | |
| Start 88: testcorenrn_netstimdirect::direct_netstimdirect | |
| 44/103 Test #72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 11.33 sec | |
| Start 89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 45/103 Test #88: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 6.65 sec | |
| Start 96: channel_benchmark_sscx::coreneuron_cpu_online | |
| Start 97: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 46/103 Test #89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 19.28 sec | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| 47/103 Test #1: testneuron ......................................................... Passed 0.09 sec | |
| Start 3: connect_dend | |
| 48/103 Test #3: connect_dend ....................................................... Passed 0.18 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 49/103 Test #2: ringtest ........................................................... Passed 0.33 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 50/103 Test #4: pynrn_tests::basic_tests ........................................... Passed 7.22 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 51/103 Test #95: channel_benchmark_sscx::neuron ..................................... Passed 125.72 sec | |
| Start 7: parallel_tests | |
| 52/103 Test #91: channel_benchmark_hippo::neuron .................................... Passed 133.31 sec | |
| Start 8: parallel_partrans | |
| 53/103 Test #92: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 133.46 sec | |
| Start 9: parallel_bas | |
| 54/103 Test #93: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 137.51 sec | |
| Start 10: coreneuron_modtests::fornetcon_py_cpu | |
| 55/103 Test #8: parallel_partrans .................................................. Passed 9.14 sec | |
| Start 11: coreneuron_modtests::direct_py_cpu | |
| 56/103 Test #7: parallel_tests ..................................................... Passed 19.08 sec | |
| Start 12: coreneuron_modtests::direct_hoc_cpu | |
| 57/103 Test #12: coreneuron_modtests::direct_hoc_cpu ................................ Passed 5.36 sec | |
| Start 13: coreneuron_modtests::spikes_py_cpu | |
| 58/103 Test #9: parallel_bas ....................................................... Passed 23.71 sec | |
| Start 14: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 59/103 Test #10: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 23.39 sec | |
| Start 15: coreneuron_modtests::fast_imem_py_cpu | |
| 60/103 Test #96: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 111.84 sec | |
| Start 16: coreneuron_modtests::datareturn_py_cpu | |
| 61/103 Test #11: coreneuron_modtests::direct_py_cpu ................................. Passed 30.33 sec | |
| Start 17: coreneuron_modtests::test_units_py_cpu | |
| 62/103 Test #97: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 112.52 sec | |
| Start 18: coreneuron_modtests::test_netmove_py_cpu | |
| 63/103 Test #13: coreneuron_modtests::spikes_py_cpu ................................. Passed 20.95 sec | |
| Start 19: coreneuron_modtests::test_watchrange_py_cpu | |
| 64/103 Test #14: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 15.83 sec | |
| Start 20: coreneuron_modtests::test_psolve_py_cpu | |
| 65/103 Test #15: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 12.58 sec | |
| Start 21: coreneuron_modtests::test_natrans_py_cpu | |
| 66/103 Test #16: coreneuron_modtests::datareturn_py_cpu ............................. Passed 6.57 sec | |
| Start 25: external_nrntest | |
| 67/103 Test #17: coreneuron_modtests::test_units_py_cpu ............................. Passed 10.12 sec | |
| Start 35: external_ringtest::compare_results | |
| 68/103 Test #35: external_ringtest::compare_results ................................. Passed 1.06 sec | |
| Start 41: testcorenrn_bbcore::compare_results | |
| 69/103 Test #41: testcorenrn_bbcore::compare_results ................................ Passed 0.85 sec | |
| Start 47: testcorenrn_deriv::compare_results | |
| 70/103 Test #47: testcorenrn_deriv::compare_results ................................. Passed 0.59 sec | |
| Start 53: testcorenrn_gf::compare_results | |
| 71/103 Test #53: testcorenrn_gf::compare_results .................................... Passed 0.39 sec | |
| Start 57: testcorenrn_patstim::compare_results | |
| 72/103 Test #57: testcorenrn_patstim::compare_results ............................... Passed 0.66 sec | |
| Start 63: testcorenrn_vecplay::compare_results | |
| 73/103 Test #63: testcorenrn_vecplay::compare_results ............................... Passed 0.59 sec | |
| Start 75: testcorenrn_watch::compare_results | |
| 74/103 Test #19: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 14.19 sec | |
| Start 81: testcorenrn_conc::compare_results | |
| 75/103 Test #18: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 15.15 sec | |
| Start 87: testcorenrn_kin::compare_results | |
| 76/103 Test #20: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 13.77 sec | |
| Start 90: testcorenrn_netstimdirect::compare_results | |
| 77/103 Test #75: testcorenrn_watch::compare_results ................................. Passed 1.64 sec | |
| Start 94: channel_benchmark_hippo::compare_results | |
| 78/103 Test #81: testcorenrn_conc::compare_results .................................. Passed 0.94 sec | |
| Start 98: channel_benchmark_sscx::compare_results | |
| 79/103 Test #87: testcorenrn_kin::compare_results ................................... Passed 1.12 sec | |
| 80/103 Test #90: testcorenrn_netstimdirect::compare_results ......................... Passed 0.85 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_py_cpu | |
| 81/103 Test #21: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 14.05 sec | |
| 82/103 Test #98: channel_benchmark_sscx::compare_results ............................ Passed 0.55 sec | |
| Start 23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 83/103 Test #94: channel_benchmark_hippo::compare_results ........................... Passed 0.84 sec | |
| 84/103 Test #22: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 7.57 sec | |
| Start 24: coreneuron_modtests::inputpresyn_py_cpu | |
| 85/103 Test #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 7.42 sec | |
| 86/103 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 123.42 sec | |
| Start 68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 87/103 Test #24: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 2.39 sec | |
| 88/103 Test #68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.16 sec | |
| Start 100: olfactory-bulb-3d::neuron::preparation | |
| 89/103 Test #100: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.03 sec | |
| Start 102: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 90/103 Test #102: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.03 sec | |
| Start 26: reduced_dentate::neuron | |
| 91/103 Test #26: reduced_dentate::neuron ............................................ Passed 11.85 sec | |
| Start 27: reduced_dentate::coreneuron_cpu | |
| 92/103 Test #27: reduced_dentate::coreneuron_cpu .................................... Passed 15.79 sec | |
| Start 64: testcorenrn_vecevent::neuron | |
| Start 28: reduced_dentate::compare_results | |
| 93/103 Test #28: reduced_dentate::compare_results ................................... Passed 0.08 sec | |
| 94/103 Test #64: testcorenrn_vecevent::neuron ....................................... Passed 6.57 sec | |
| Start 65: testcorenrn_vecevent::coreneuron_cpu_online | |
| 95/103 Test #65: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 12.77 sec | |
| Start 66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 96/103 Test #66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 7.25 sec | |
| Start 67: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 97/103 Test #67: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 1.78 sec | |
| Start 99: olfactory-bulb-3d::neuron | |
| Start 69: testcorenrn_vecevent::compare_results | |
| 98/103 Test #69: testcorenrn_vecevent::compare_results .............................. Passed 0.59 sec | |
| 99/103 Test #25: external_nrntest ................................................... Passed 156.05 sec | |
| 100/103 Test #99: olfactory-bulb-3d::neuron .......................................... Passed 78.82 sec | |
| Start 101: olfactory-bulb-3d::coreneuron_cpu_online | |
| 101/103 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 263.55 sec | |
| 102/103 Test #101: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 47.60 sec | |
| Start 103: olfactory-bulb-3d::compare_results | |
| 103/103 Test #103: olfactory-bulb-3d::compare_results ................................. Passed 0.27 sec | |
| 100% tests passed, 0 tests failed out of 103 | |
| Total Test time (real) = 396.29 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1638198951:step_script [0Ksection_start:1638198951:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=227838 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99616 responseStatus[0;m=201 Created token[0;m=_BPXxAvX | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=227871 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99616 responseStatus[0;m=201 Created token[0;m=_BPXxAvX | |
| section_end:1638198952:upload_artifacts_on_success [0Ksection_start:1638198952:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638198953:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638199695:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638199695:resolve_secrets [0Ksection_start:1638199695:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor658631828, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99617 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99617 | |
| A slurm job will be created with name GL_J99617_PROD_P112_CP4_C5 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 94348 | |
| job state: R | |
| section_end:1638199696:prepare_executor [0Ksection_start:1638199696:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u13.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1638199701:prepare_script [0Ksection_start:1638199701:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638199702:get_sources [0Ksection_start:1638199702:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron+nmodl:gpu (99613)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=49132 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99613 responseStatus[0;m=200 OK token[0;m=-dKbWSDM | |
| section_end:1638199702:download_artifacts [0Ksection_start:1638199702:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n19 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20211129-1529 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99613/_/spack-build/spack-stage-neuron-develop-kxhxq4seozqasdxdnbgni3g566ai7oyd/spack-build-kxhxq4s | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 52: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 69: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 73: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 1/142 Test #73: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.44 sec | |
| Start 87: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/142 Test #59: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.46 sec | |
| Start 44: external_ringtest::neuron | |
| 3/142 Test #69: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 2.48 sec | |
| Start 55: testcorenrn_bbcore::neuron | |
| 4/142 Test #63: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.52 sec | |
| Start 56: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/142 Test #44: external_ringtest::neuron .......................................... Passed 1.52 sec | |
| Start 57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/142 Test #87: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 1.82 sec | |
| Start 58: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/142 Test #48: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 4.63 sec | |
| Start 79: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| 8/142 Test #55: testcorenrn_bbcore::neuron ......................................... Passed 3.44 sec | |
| Start 60: testcorenrn_bbcore::coreneuron_cpu_online | |
| 9/142 Test #52: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 6.10 sec | |
| Start 83: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 10/142 Test #56: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 4.08 sec | |
| Start 61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 11/142 Test #79: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 2.15 sec | |
| Start 89: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 12/142 Test #58: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 2.77 sec | |
| Start 62: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 13/142 Test #57: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 3.86 sec | |
| Start 65: testcorenrn_deriv::neuron | |
| 14/142 Test #62: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.14 sec | |
| Start 66: testcorenrn_deriv::coreneuron_gpu_online | |
| 15/142 Test #65: testcorenrn_deriv::neuron .......................................... Passed 2.57 sec | |
| Start 67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 16/142 Test #61: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 3.97 sec | |
| Start 68: testcorenrn_deriv::coreneuron_gpu_offline | |
| 17/142 Test #68: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 5.19 sec | |
| Start 70: testcorenrn_deriv::coreneuron_cpu_online | |
| 18/142 Test #66: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 7.67 sec | |
| Start 71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 19/142 Test #67: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 6.91 sec | |
| Start 72: testcorenrn_deriv::coreneuron_cpu_offline | |
| 20/142 Test #89: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 11.57 sec | |
| Start 95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 21/142 Test #72: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 2.04 sec | |
| Start 86: testcorenrn_patstim::coreneuron_gpu_offline | |
| 22/142 Test #70: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.97 sec | |
| Start 124: channel_benchmark_hippo::neuron | |
| 23/142 Test #83: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 14.76 sec | |
| Start 99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 24/142 Test #95: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 2.58 sec | |
| Start 115: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 25/142 Test #71: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.10 sec | |
| Start 125: channel_benchmark_hippo::coreneuron_gpu_online | |
| 26/142 Test #60: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 16.15 sec | |
| Start 126: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 27/142 Test #86: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 2.77 sec | |
| Start 127: channel_benchmark_hippo::coreneuron_cpu_online | |
| 28/142 Test #99: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.44 sec | |
| Start 119: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 29/142 Test #115: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 2.49 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 30/142 Test #119: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.54 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi | |
| 31/142 Test #45: external_ringtest::neuron_mpi ...................................... Passed 9.88 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi_offline | |
| 32/142 Test #46: external_ringtest::coreneuron_cpu_mpi .............................. Passed 18.86 sec | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_threads | |
| 33/142 Test #47: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 12.55 sec | |
| Start 50: external_ringtest::coreneuron_gpu_mpi | |
| 34/142 Test #49: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 20.84 sec | |
| Start 51: external_ringtest::coreneuron_gpu_mpi_offline | |
| 35/142 Test #50: external_ringtest::coreneuron_gpu_mpi .............................. Passed 28.22 sec | |
| Start 53: external_ringtest::coreneuron_gpu_mpi_threads | |
| 36/142 Test #51: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 18.61 sec | |
| Start 75: testcorenrn_gf::neuron | |
| 37/142 Test #75: testcorenrn_gf::neuron ............................................. Passed 6.07 sec | |
| Start 76: testcorenrn_gf::coreneuron_gpu_online | |
| 38/142 Test #53: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 30.99 sec | |
| Start 77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 39/142 Test #125: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 88.88 sec | |
| Start 128: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 40/142 Test #126: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 88.31 sec | |
| Start 130: channel_benchmark_sscx::neuron | |
| 41/142 Test #76: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 21.89 sec | |
| Start 78: testcorenrn_gf::coreneuron_gpu_offline | |
| 42/142 Test #124: channel_benchmark_hippo::neuron .................................... Passed 94.07 sec | |
| Start 131: channel_benchmark_sscx::coreneuron_gpu_online | |
| 43/142 Test #127: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 92.89 sec | |
| Start 132: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 44/142 Test #77: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 21.93 sec | |
| Start 80: testcorenrn_gf::coreneuron_cpu_online | |
| 45/142 Test #78: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 19.26 sec | |
| Start 81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 46/142 Test #80: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 12.29 sec | |
| Start 82: testcorenrn_gf::coreneuron_cpu_offline | |
| 47/142 Test #82: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 14.84 sec | |
| Start 85: testcorenrn_patstim::neuron | |
| 48/142 Test #85: testcorenrn_patstim::neuron ........................................ Passed 3.40 sec | |
| Start 88: testcorenrn_patstim::coreneuron_cpu_offline | |
| 49/142 Test #81: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 26.32 sec | |
| Start 91: testcorenrn_vecplay::neuron | |
| 50/142 Test #91: testcorenrn_vecplay::neuron ........................................ Passed 2.74 sec | |
| Start 92: testcorenrn_vecplay::coreneuron_gpu_online | |
| 51/142 Test #88: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 13.99 sec | |
| Start 93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 52/142 Test #92: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 25.47 sec | |
| Start 94: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 53/142 Test #93: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 24.03 sec | |
| Start 96: testcorenrn_vecplay::coreneuron_cpu_online | |
| 54/142 Test #130: channel_benchmark_sscx::neuron ..................................... Passed 86.68 sec | |
| Start 133: channel_benchmark_sscx::coreneuron_cpu_online | |
| 55/142 Test #131: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 89.11 sec | |
| Start 134: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 56/142 Test #132: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 88.11 sec | |
| Start 1: testneuron | |
| 57/142 Test #94: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 17.29 sec | |
| Start 97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 58/142 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 59/142 Test #128: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 93.61 sec | |
| Start 3: connect_dend | |
| 60/142 Test #2: ringtest ........................................................... Passed 0.28 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 61/142 Test #3: connect_dend ....................................................... Passed 0.32 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 62/142 Test #96: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 13.26 sec | |
| Start 98: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 63/142 Test #4: pynrn_tests::basic_tests ........................................... Passed 8.99 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 64/142 Test #97: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 13.11 sec | |
| Start 111: testcorenrn_watch::neuron | |
| 65/142 Test #98: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 9.49 sec | |
| Start 112: testcorenrn_watch::coreneuron_gpu_online | |
| 66/142 Test #111: testcorenrn_watch::neuron .......................................... Passed 2.92 sec | |
| Start 113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 67/142 Test #112: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 16.07 sec | |
| Start 114: testcorenrn_watch::coreneuron_gpu_offline | |
| 68/142 Test #113: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 21.59 sec | |
| Start 116: testcorenrn_watch::coreneuron_cpu_online | |
| 69/142 Test #114: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 13.46 sec | |
| Start 117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 70/142 Test #133: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 51.34 sec | |
| Start 7: parallel_tests | |
| 71/142 Test #134: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 45.52 sec | |
| Start 8: parallel_partrans | |
| 72/142 Test #116: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 9.49 sec | |
| Start 118: testcorenrn_watch::coreneuron_cpu_offline | |
| 73/142 Test #117: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 4.98 sec | |
| Start 121: testcorenrn_netstimdirect::direct_netstimdirect | |
| 74/142 Test #8: parallel_partrans .................................................. Passed 4.70 sec | |
| Start 9: parallel_bas | |
| 75/142 Test #7: parallel_tests ..................................................... Passed 5.16 sec | |
| Start 10: coreneuron_modtests::fornetcon_py_cpu | |
| 76/142 Test #118: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 4.99 sec | |
| Start 122: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 77/142 Test #10: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 5.19 sec | |
| Start 11: coreneuron_modtests::direct_py_cpu | |
| 78/142 Test #9: parallel_bas ....................................................... Passed 6.55 sec | |
| Start 12: coreneuron_modtests::direct_hoc_cpu | |
| 79/142 Test #121: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 9.97 sec | |
| Start 13: coreneuron_modtests::spikes_py_cpu | |
| Start 14: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 80/142 Test #12: coreneuron_modtests::direct_hoc_cpu ................................ Passed 3.16 sec | |
| Start 15: coreneuron_modtests::fast_imem_py_cpu | |
| 81/142 Test #11: coreneuron_modtests::direct_py_cpu ................................. Passed 4.32 sec | |
| Start 16: coreneuron_modtests::datareturn_py_cpu | |
| 82/142 Test #122: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 9.63 sec | |
| Start 17: coreneuron_modtests::test_units_py_cpu | |
| Start 18: coreneuron_modtests::test_netmove_py_cpu | |
| 83/142 Test #15: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 2.12 sec | |
| Start 19: coreneuron_modtests::test_watchrange_py_cpu | |
| 84/142 Test #14: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 4.46 sec | |
| Start 20: coreneuron_modtests::test_psolve_py_cpu | |
| 85/142 Test #13: coreneuron_modtests::spikes_py_cpu ................................. Passed 5.14 sec | |
| Start 21: coreneuron_modtests::test_natrans_py_cpu | |
| 86/142 Test #16: coreneuron_modtests::datareturn_py_cpu ............................. Passed 5.37 sec | |
| Start 25: coreneuron_modtests::direct_py_gpu | |
| 87/142 Test #17: coreneuron_modtests::test_units_py_cpu ............................. Passed 4.25 sec | |
| Start 26: coreneuron_modtests::direct_hoc_gpu | |
| 88/142 Test #19: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 4.97 sec | |
| Start 27: coreneuron_modtests::spikes_py_gpu | |
| 89/142 Test #20: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 4.85 sec | |
| Start 28: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 90/142 Test #21: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 4.39 sec | |
| Start 29: coreneuron_modtests::fast_imem_py_gpu | |
| 91/142 Test #26: coreneuron_modtests::direct_hoc_gpu ................................ Passed 4.23 sec | |
| Start 30: coreneuron_modtests::datareturn_py_gpu | |
| 92/142 Test #29: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 2.47 sec | |
| Start 31: coreneuron_modtests::test_units_py_gpu | |
| 93/142 Test #25: coreneuron_modtests::direct_py_gpu ................................. Passed 6.34 sec | |
| Start 32: coreneuron_modtests::test_netmove_py_gpu | |
| 94/142 Test #18: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 10.20 sec | |
| Start 33: coreneuron_modtests::test_watchrange_py_gpu | |
| 95/142 Test #27: coreneuron_modtests::spikes_py_gpu ................................. Passed 6.95 sec | |
| Start 34: coreneuron_modtests::test_psolve_py_gpu | |
| 96/142 Test #28: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 5.35 sec | |
| Start 35: coreneuron_modtests::test_natrans_py_gpu | |
| 97/142 Test #31: coreneuron_modtests::test_units_py_gpu ............................. Passed 4.83 sec | |
| Start 39: external_nrntest | |
| 98/142 Test #33: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 7.51 sec | |
| Start 54: external_ringtest::compare_results | |
| 99/142 Test #54: external_ringtest::compare_results ................................. Passed 0.07 sec | |
| Start 64: testcorenrn_bbcore::compare_results | |
| 100/142 Test #64: testcorenrn_bbcore::compare_results ................................ Passed 0.07 sec | |
| Start 74: testcorenrn_deriv::compare_results | |
| 101/142 Test #74: testcorenrn_deriv::compare_results ................................. Passed 0.09 sec | |
| Start 84: testcorenrn_gf::compare_results | |
| 102/142 Test #84: testcorenrn_gf::compare_results .................................... Passed 0.06 sec | |
| Start 90: testcorenrn_patstim::compare_results | |
| 103/142 Test #90: testcorenrn_patstim::compare_results ............................... Passed 0.12 sec | |
| Start 100: testcorenrn_vecplay::compare_results | |
| 104/142 Test #100: testcorenrn_vecplay::compare_results ............................... Passed 0.11 sec | |
| Start 120: testcorenrn_watch::compare_results | |
| 105/142 Test #120: testcorenrn_watch::compare_results ................................. Passed 0.11 sec | |
| Start 123: testcorenrn_netstimdirect::compare_results | |
| 106/142 Test #123: testcorenrn_netstimdirect::compare_results ......................... Passed 0.06 sec | |
| Start 129: channel_benchmark_hippo::compare_results | |
| 107/142 Test #129: channel_benchmark_hippo::compare_results ........................... Passed 0.06 sec | |
| Start 135: channel_benchmark_sscx::compare_results | |
| 108/142 Test #135: channel_benchmark_sscx::compare_results ............................ Passed 0.06 sec | |
| 109/142 Test #35: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 6.31 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_py_cpu | |
| 110/142 Test #34: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 7.49 sec | |
| 111/142 Test #30: coreneuron_modtests::datareturn_py_gpu ............................. Passed 13.53 sec | |
| Start 23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 112/142 Test #32: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 12.55 sec | |
| 113/142 Test #22: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 4.23 sec | |
| Start 24: coreneuron_modtests::inputpresyn_py_cpu | |
| 114/142 Test #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 10.06 sec | |
| Start 36: coreneuron_modtests::spikes_mpi_py_gpu | |
| 115/142 Test #24: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 9.04 sec | |
| Start 37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 116/142 Test #37: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 10.96 sec | |
| Start 38: coreneuron_modtests::inputpresyn_py_gpu | |
| 117/142 Test #36: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 11.41 sec | |
| 118/142 Test #38: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 10.27 sec | |
| Start 105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 119/142 Test #105: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 3.36 sec | |
| Start 109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 120/142 Test #109: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.73 sec | |
| Start 137: olfactory-bulb-3d::neuron::preparation | |
| 121/142 Test #137: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 139: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 122/142 Test #139: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.02 sec | |
| Start 141: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 123/142 Test #141: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.02 sec | |
| Start 40: reduced_dentate::neuron | |
| 124/142 Test #40: reduced_dentate::neuron ............................................ Passed 34.86 sec | |
| Start 41: reduced_dentate::coreneuron_cpu | |
| 125/142 Test #39: external_nrntest ................................................... Passed 109.77 sec | |
| 126/142 Test #41: reduced_dentate::coreneuron_cpu .................................... Passed 37.34 sec | |
| Start 42: reduced_dentate::coreneuron_gpu | |
| 127/142 Test #42: reduced_dentate::coreneuron_gpu .................................... Passed 35.16 sec | |
| Start 101: testcorenrn_vecevent::neuron | |
| Start 43: reduced_dentate::compare_results | |
| 128/142 Test #43: reduced_dentate::compare_results ................................... Passed 0.07 sec | |
| 129/142 Test #101: testcorenrn_vecevent::neuron ....................................... Passed 3.45 sec | |
| Start 102: testcorenrn_vecevent::coreneuron_gpu_online | |
| 130/142 Test #102: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 18.57 sec | |
| Start 103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 131/142 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 265.72 sec | |
| 132/142 Test #103: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 14.97 sec | |
| Start 104: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 133/142 Test #104: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 3.42 sec | |
| Start 106: testcorenrn_vecevent::coreneuron_cpu_online | |
| 134/142 Test #106: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 7.57 sec | |
| Start 107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 135/142 Test #107: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 9.16 sec | |
| Start 108: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 136/142 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 278.47 sec | |
| Start 136: olfactory-bulb-3d::neuron | |
| 137/142 Test #108: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 2.05 sec | |
| Start 138: olfactory-bulb-3d::coreneuron_gpu_online | |
| 138/142 Test #138: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 80.72 sec | |
| Start 140: olfactory-bulb-3d::coreneuron_cpu_online | |
| 139/142 Test #136: olfactory-bulb-3d::neuron .......................................... Passed 91.56 sec | |
| Start 110: testcorenrn_vecevent::compare_results | |
| 140/142 Test #110: testcorenrn_vecevent::compare_results .............................. Passed 0.09 sec | |
| 141/142 Test #140: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 39.59 sec | |
| Start 142: olfactory-bulb-3d::compare_results | |
| 142/142 Test #142: olfactory-bulb-3d::compare_results ................................. Passed 0.24 sec | |
| 100% tests passed, 0 tests failed out of 142 | |
| Total Test time (real) = 612.64 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1638200353:step_script [0Ksection_start:1638200353:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60201 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99617 responseStatus[0;m=201 Created token[0;m=kjBF9eZb | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=60233 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99617 responseStatus[0;m=201 Created token[0;m=kjBF9eZb | |
| section_end:1638200354:upload_artifacts_on_success [0Ksection_start:1638200354:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638200355:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1638199278:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1638199278:resolve_secrets [0Ksection_start:1638199278:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor698469059, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 27109, build ref d86aefa82808e5df00dcbd3c88d9893994c7f531, job ID 99615 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P27109/J99615 | |
| A slurm job will be created with name GL_J99615_PROD_P112_CP3_C4 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 94342 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| section_end:1638199294:prepare_executor [0Ksection_start:1638199294:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n20 via bbpv1.epfl.ch... | |
| section_end:1638199297:prepare_script [0Ksection_start:1638199297:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1638199298:get_sources [0Ksection_start:1638199298:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron+nmodl:intel (99611)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=177629 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=99611 responseStatus[0;m=200 OK token[0;m=_qejfGV2 | |
| section_end:1638199299:download_artifacts [0Ksection_start:1638199299:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i5n20 | |
| Build name: Linux-icpc | |
| Create new tag: 20211129-1522 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P27109/J99611/_/spack-build/spack-stage-neuron-develop-jhigcl7ephcbe47kbyz2znl76v2kaeev/spack-build-jhigcl7 | |
| Start 33: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 46: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 52: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 56: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 1/103 Test #40: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.18 sec | |
| Start 80: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/103 Test #46: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.23 sec | |
| Start 86: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 3/103 Test #52: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 2.60 sec | |
| Start 62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 4/103 Test #56: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.64 sec | |
| Start 74: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 5/103 Test #33: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 2.95 sec | |
| Start 29: external_ringtest::neuron | |
| Start 36: testcorenrn_bbcore::neuron | |
| 6/103 Test #80: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 1.58 sec | |
| Start 37: testcorenrn_bbcore::coreneuron_cpu_online | |
| 7/103 Test #86: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 1.60 sec | |
| Start 38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 8/103 Test #62: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 2.00 sec | |
| Start 30: external_ringtest::neuron_mpi | |
| 9/103 Test #36: testcorenrn_bbcore::neuron ......................................... Passed 1.69 sec | |
| Start 39: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 10/103 Test #74: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.05 sec | |
| Start 31: external_ringtest::coreneuron_cpu_mpi | |
| 11/103 Test #29: external_ringtest::neuron .......................................... Passed 2.03 sec | |
| Start 42: testcorenrn_deriv::neuron | |
| 12/103 Test #37: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 2.36 sec | |
| Start 43: testcorenrn_deriv::coreneuron_cpu_online | |
| 13/103 Test #39: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 1.58 sec | |
| Start 44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 14/103 Test #38: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 2.85 sec | |
| Start 45: testcorenrn_deriv::coreneuron_cpu_offline | |
| 15/103 Test #42: testcorenrn_deriv::neuron .......................................... Passed 1.86 sec | |
| Start 76: testcorenrn_conc::neuron | |
| 16/103 Test #45: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.59 sec | |
| Start 77: testcorenrn_conc::coreneuron_cpu_online | |
| 17/103 Test #76: testcorenrn_conc::neuron ........................................... Passed 1.92 sec | |
| Start 78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 18/103 Test #43: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 3.35 sec | |
| Start 79: testcorenrn_conc::coreneuron_cpu_offline | |
| 19/103 Test #44: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 4.04 sec | |
| Start 82: testcorenrn_kin::neuron | |
| 20/103 Test #79: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.48 sec | |
| Start 83: testcorenrn_kin::coreneuron_cpu_online | |
| 21/103 Test #30: external_ringtest::neuron_mpi ...................................... Passed 6.45 sec | |
| Start 32: external_ringtest::coreneuron_cpu_mpi_offline | |
| 22/103 Test #31: external_ringtest::coreneuron_cpu_mpi .............................. Passed 6.42 sec | |
| Start 34: external_ringtest::coreneuron_cpu_mpi_threads | |
| 23/103 Test #78: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 3.13 sec | |
| Start 84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 24/103 Test #82: testcorenrn_kin::neuron ............................................ Passed 1.77 sec | |
| Start 85: testcorenrn_kin::coreneuron_cpu_offline | |
| 25/103 Test #77: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 3.77 sec | |
| Start 91: channel_benchmark_hippo::neuron | |
| 26/103 Test #83: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 4.39 sec | |
| Start 92: channel_benchmark_hippo::coreneuron_cpu_online | |
| 27/103 Test #85: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 3.47 sec | |
| Start 93: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 28/103 Test #32: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 4.56 sec | |
| Start 48: testcorenrn_gf::neuron | |
| 29/103 Test #34: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 7.98 sec | |
| Start 49: testcorenrn_gf::coreneuron_cpu_online | |
| 30/103 Test #49: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 6.04 sec | |
| Start 50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 31/103 Test #84: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 15.14 sec | |
| Start 95: channel_benchmark_sscx::neuron | |
| 32/103 Test #48: testcorenrn_gf::neuron ............................................. Passed 16.03 sec | |
| Start 51: testcorenrn_gf::coreneuron_cpu_offline | |
| 33/103 Test #51: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 6.91 sec | |
| Start 54: testcorenrn_patstim::neuron | |
| 34/103 Test #50: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 16.89 sec | |
| Start 55: testcorenrn_patstim::coreneuron_cpu_offline | |
| 35/103 Test #54: testcorenrn_patstim::neuron ........................................ Passed 3.84 sec | |
| Start 58: testcorenrn_vecplay::neuron | |
| 36/103 Test #55: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 2.19 sec | |
| Start 59: testcorenrn_vecplay::coreneuron_cpu_online | |
| 37/103 Test #58: testcorenrn_vecplay::neuron ........................................ Passed 3.28 sec | |
| Start 60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 38/103 Test #59: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 5.67 sec | |
| Start 61: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 39/103 Test #61: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 3.27 sec | |
| Start 70: testcorenrn_watch::neuron | |
| 40/103 Test #70: testcorenrn_watch::neuron .......................................... Passed 4.42 sec | |
| Start 71: testcorenrn_watch::coreneuron_cpu_online | |
| 41/103 Test #60: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 12.90 sec | |
| Start 72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 42/103 Test #71: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 6.59 sec | |
| Start 73: testcorenrn_watch::coreneuron_cpu_offline | |
| 43/103 Test #73: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.30 sec | |
| Start 88: testcorenrn_netstimdirect::direct_netstimdirect | |
| 44/103 Test #72: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 10.75 sec | |
| Start 89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 45/103 Test #88: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 6.16 sec | |
| Start 96: channel_benchmark_sscx::coreneuron_cpu_online | |
| Start 97: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 46/103 Test #89: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 13.09 sec | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| 47/103 Test #1: testneuron ......................................................... Passed 0.08 sec | |
| Start 3: connect_dend | |
| 48/103 Test #3: connect_dend ....................................................... Passed 0.18 sec | |
| Start 4: pynrn_tests::basic_tests | |
| 49/103 Test #2: ringtest ........................................................... Passed 0.31 sec | |
| Start 5: rxdmod_tests::rxd_tests | |
| 50/103 Test #4: pynrn_tests::basic_tests ........................................... Passed 5.67 sec | |
| Start 6: rxdmod_tests::rxd_mpi_tests | |
| 51/103 Test #91: channel_benchmark_hippo::neuron .................................... Passed 117.96 sec | |
| Start 7: parallel_tests | |
| 52/103 Test #92: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 119.54 sec | |
| Start 8: parallel_partrans | |
| 53/103 Test #8: parallel_partrans .................................................. Passed 10.92 sec | |
| Start 9: parallel_bas | |
| 54/103 Test #7: parallel_tests ..................................................... Passed 19.36 sec | |
| Start 10: coreneuron_modtests::fornetcon_py_cpu | |
| 55/103 Test #5: rxdmod_tests::rxd_tests ............................................ Passed 75.24 sec | |
| Start 11: coreneuron_modtests::direct_py_cpu | |
| 56/103 Test #93: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 148.22 sec | |
| Start 12: coreneuron_modtests::direct_hoc_cpu | |
| 57/103 Test #95: channel_benchmark_sscx::neuron ..................................... Passed 136.84 sec | |
| Start 13: coreneuron_modtests::spikes_py_cpu | |
| 58/103 Test #9: parallel_bas ....................................................... Passed 23.09 sec | |
| Start 14: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 59/103 Test #10: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 19.95 sec | |
| Start 15: coreneuron_modtests::fast_imem_py_cpu | |
| 60/103 Test #12: coreneuron_modtests::direct_hoc_cpu ................................ Passed 6.20 sec | |
| Start 16: coreneuron_modtests::datareturn_py_cpu | |
| 61/103 Test #11: coreneuron_modtests::direct_py_cpu ................................. Passed 33.49 sec | |
| Start 17: coreneuron_modtests::test_units_py_cpu | |
| 62/103 Test #96: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 121.18 sec | |
| Start 18: coreneuron_modtests::test_netmove_py_cpu | |
| 63/103 Test #97: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 121.95 sec | |
| Start 19: coreneuron_modtests::test_watchrange_py_cpu | |
| 64/103 Test #13: coreneuron_modtests::spikes_py_cpu ................................. Passed 31.76 sec | |
| Start 20: coreneuron_modtests::test_psolve_py_cpu | |
| 65/103 Test #14: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 28.01 sec | |
| Start 21: coreneuron_modtests::test_natrans_py_cpu | |
| 66/103 Test #15: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 27.73 sec | |
| Start 25: external_nrntest | |
| 67/103 Test #16: coreneuron_modtests::datareturn_py_cpu ............................. Passed 29.74 sec | |
| Start 35: external_ringtest::compare_results | |
| 68/103 Test #35: external_ringtest::compare_results ................................. Passed 0.27 sec | |
| Start 41: testcorenrn_bbcore::compare_results | |
| 69/103 Test #41: testcorenrn_bbcore::compare_results ................................ Passed 0.24 sec | |
| Start 47: testcorenrn_deriv::compare_results | |
| 70/103 Test #47: testcorenrn_deriv::compare_results ................................. Passed 0.89 sec | |
| Start 53: testcorenrn_gf::compare_results | |
| 71/103 Test #53: testcorenrn_gf::compare_results .................................... Passed 0.77 sec | |
| Start 57: testcorenrn_patstim::compare_results | |
| 72/103 Test #57: testcorenrn_patstim::compare_results ............................... Passed 0.36 sec | |
| Start 63: testcorenrn_vecplay::compare_results | |
| 73/103 Test #17: coreneuron_modtests::test_units_py_cpu ............................. Passed 11.00 sec | |
| Start 75: testcorenrn_watch::compare_results | |
| 74/103 Test #63: testcorenrn_vecplay::compare_results ............................... Passed 0.37 sec | |
| Start 81: testcorenrn_conc::compare_results | |
| 75/103 Test #81: testcorenrn_conc::compare_results .................................. Passed 0.38 sec | |
| Start 87: testcorenrn_kin::compare_results | |
| 76/103 Test #75: testcorenrn_watch::compare_results ................................. Passed 0.49 sec | |
| Start 90: testcorenrn_netstimdirect::compare_results | |
| 77/103 Test #87: testcorenrn_kin::compare_results ................................... Passed 1.05 sec | |
| Start 94: channel_benchmark_hippo::compare_results | |
| 78/103 Test #90: testcorenrn_netstimdirect::compare_results ......................... Passed 1.00 sec | |
| Start 98: channel_benchmark_sscx::compare_results | |
| 79/103 Test #94: channel_benchmark_hippo::compare_results ........................... Passed 1.02 sec | |
| 80/103 Test #98: channel_benchmark_sscx::compare_results ............................ Passed 1.02 sec | |
| Start 22: coreneuron_modtests::spikes_mpi_py_cpu | |
| 81/103 Test #19: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 9.92 sec | |
| 82/103 Test #20: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 10.45 sec | |
| Start 23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 83/103 Test #21: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 9.17 sec | |
| 84/103 Test #18: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 12.50 sec | |
| Start 24: coreneuron_modtests::inputpresyn_py_cpu | |
| 85/103 Test #22: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 5.18 sec | |
| 86/103 Test #23: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 4.36 sec | |
| Start 68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 87/103 Test #24: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 3.23 sec | |
| 88/103 Test #68: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.24 sec | |
| Start 100: olfactory-bulb-3d::neuron::preparation | |
| 89/103 Test #100: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 102: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 90/103 Test #102: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.02 sec | |
| Start 26: reduced_dentate::neuron | |
| 91/103 Test #26: reduced_dentate::neuron ............................................ Passed 30.81 sec | |
| Start 27: reduced_dentate::coreneuron_cpu | |
| 92/103 Test #27: reduced_dentate::coreneuron_cpu .................................... Passed 17.13 sec | |
| Start 64: testcorenrn_vecevent::neuron | |
| Start 28: reduced_dentate::compare_results | |
| 93/103 Test #28: reduced_dentate::compare_results ................................... Passed 0.07 sec | |
| 94/103 Test #64: testcorenrn_vecevent::neuron ....................................... Passed 3.74 sec | |
| Start 65: testcorenrn_vecevent::coreneuron_cpu_online | |
| 95/103 Test #65: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 8.14 sec | |
| Start 66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 96/103 Test #66: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 28.38 sec | |
| Start 67: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 97/103 Test #67: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 2.03 sec | |
| Start 99: olfactory-bulb-3d::neuron | |
| Start 69: testcorenrn_vecevent::compare_results | |
| 98/103 Test #69: testcorenrn_vecevent::compare_results .............................. Passed 0.08 sec | |
| 99/103 Test #6: rxdmod_tests::rxd_mpi_tests ........................................ Passed 245.19 sec | |
| 100/103 Test #25: external_nrntest ................................................... Passed 186.48 sec | |
| Start 101: olfactory-bulb-3d::coreneuron_cpu_online | |
| 101/103 Test #99: olfactory-bulb-3d::neuron .......................................... Passed 83.80 sec | |
| 102/103 Test #101: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 43.06 sec | |
| Start 103: olfactory-bulb-3d::compare_results | |
| 103/103 Test #103: olfactory-bulb-3d::compare_results ................................. Passed 0.19 sec | |
| 100% tests passed, 0 tests failed out of 103 | |
| Total Test time (real) = 426.85 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.8.3 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1638199769:step_script [0Ksection_start:1638199769:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=187051 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=99615 responseStatus[0;m=201 Created token[0;m=x4bmHp8z | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=187082 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=99615 responseStatus[0;m=201 Created token[0;m=x4bmHp8z | |
| section_end:1638199771:upload_artifacts_on_success [0Ksection_start:1638199771:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1638199772:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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