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June 3, 2016 23:15
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(partial) EasyBuild log for failed build of /local/585950[3079].master19.golett.gent.vsc/eb-IcDEXQ/files_pr3079/R/R-3.3.0-foss-2016a-bare.eb (PR #3079)
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== 2016-06-04 01:15:10,731 easyblock.py:255 INFO This is EasyBuild 2.9.0.dev0 (framework: 2.8.1, easyblocks: 2.9.0.dev0) on host node2542.golett.os. | |
== 2016-06-04 01:15:10,732 easyblock.py:261 INFO This is easyblock EB_R from module easybuild.easyblocks.r.r (/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-2.9.0.dev0-py2.6.egg/easybuild/easyblocks/r/r.py) | |
== 2016-06-04 01:15:10,732 easyblock.py:746 INFO Build dir set to /tmp/vsc40023/easybuild_build/R/3.3.0/foss-2016a-bare | |
== 2016-06-04 01:15:10,732 config.py:404 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/software | |
== 2016-06-04 01:15:10,732 easyconfig.py:1477 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x14485d0> | |
== 2016-06-04 01:15:10,732 easyconfig.py:1483 DEBUG Obtained subdir R/3.3.0-foss-2016a-bare | |
== 2016-06-04 01:15:10,732 easyblock.py:780 INFO Software install dir set to /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/software/R/3.3.0-foss-2016a-bare | |
== 2016-06-04 01:15:10,732 config.py:404 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules | |
== 2016-06-04 01:15:10,733 easyblock.py:785 INFO Module install dir set to /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all | |
== 2016-06-04 01:15:10,733 easyblock.py:240 INFO Init completed for application name R version 3.3.0 | |
== 2016-06-04 01:15:10,733 easyblock.py:2336 INFO Obtained application instance of for R (easyblock: None) | |
== 2016-06-04 01:15:10,733 easyblock.py:2349 DEBUG Skip set to False | |
== 2016-06-04 01:15:10,733 build_log.py:227 INFO building and installing R/3.3.0-foss-2016a-bare... | |
== 2016-06-04 01:15:10,733 easyblock.py:2122 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
== 2016-06-04 01:15:10,733 build_log.py:227 INFO fetching files... | |
== 2016-06-04 01:15:10,733 easyblock.py:2130 INFO Starting fetch step | |
== 2016-06-04 01:15:10,734 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-bare', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.3.0', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[('openssl-devel', 'libssl-dev', 'libopenssl-devel', 'libicu-dev', 'libicu-devel')], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.r-project.org/', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['R is a free software environment for statistical computing and graphics.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'libreadline/6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': 'libreadline/6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpng/1.6.21-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpng', 'dummy': False, 'short_mod_name': 'libpng/1.6.21-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.21', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'dummy': False, 'short_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.4.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'LibTIFF', 'dummy': False, 'short_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.0.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Java/1.8.0_92', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'Java', 'dummy': True, 'short_mod_name': 'Java/1.8.0_92', 'external_module': False, 'versionsuffix': '', 'version': '1.8.0_92', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tcl/8.6.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tcl', 'dummy': False, 'short_mod_name': 'Tcl/8.6.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tk', 'dummy': False, 'short_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'external_module': False, 'versionsuffix': '-libX11-1.6.3', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.47.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.47.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '7.47.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libxml2/2.9.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libxml2', 'dummy': False, 'short_mod_name': 'libxml2/2.9.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.9.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.1.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PROJ/4.9.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PROJ', 'dummy': False, 'short_mod_name': 'PROJ/4.9.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.9.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libX11/1.6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libX11', 'dummy': False, 'short_mod_name': 'libX11/1.6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libXt/1.1.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libXt', 'dummy': False, 'short_mod_name': 'libXt/1.1.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.1.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Pango/1.40.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Pango', 'dummy': False, 'short_mod_name': 'Pango/1.40.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.40.1', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cairo', 'dummy': False, 'short_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'external_module': False, 'versionsuffix': '-GLib-2.48.0', 'version': '1.14.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.38-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.38-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.38', 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['lang', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': [None, "Prefix command line option for configure script ('--prefix=' if None)", (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['R', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://cran.us.r-project.org/src/base/R-%(version_major)s'], 'List of URLs for source files', (3, 'build')], 'easyblock': [None, 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --with-x=yes --with-tcltk=yes --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-recommended-packages=no', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
== 2016-06-04 01:15:10,736 templates.py:173 DEBUG version found in easyconfig is 3.3.0 | |
== 2016-06-04 01:15:10,736 templates.py:210 DEBUG name: name, config: R | |
== 2016-06-04 01:15:10,736 templates.py:210 DEBUG name: version, config: 3.3.0 | |
== 2016-06-04 01:15:10,736 templates.py:210 DEBUG name: versionsuffix, config: -bare | |
== 2016-06-04 01:15:10,736 templates.py:210 DEBUG name: versionprefix, config: | |
== 2016-06-04 01:15:10,737 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-bare', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.3.0', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[('openssl-devel', 'libssl-dev', 'libopenssl-devel', 'libicu-dev', 'libicu-devel')], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.r-project.org/', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['R is a free software environment for statistical computing and graphics.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'libreadline/6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': 'libreadline/6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpng/1.6.21-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpng', 'dummy': False, 'short_mod_name': 'libpng/1.6.21-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.21', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'dummy': False, 'short_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.4.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'LibTIFF', 'dummy': False, 'short_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.0.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Java/1.8.0_92', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'Java', 'dummy': True, 'short_mod_name': 'Java/1.8.0_92', 'external_module': False, 'versionsuffix': '', 'version': '1.8.0_92', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tcl/8.6.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tcl', 'dummy': False, 'short_mod_name': 'Tcl/8.6.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tk', 'dummy': False, 'short_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'external_module': False, 'versionsuffix': '-libX11-1.6.3', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.47.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.47.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '7.47.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libxml2/2.9.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libxml2', 'dummy': False, 'short_mod_name': 'libxml2/2.9.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.9.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.1.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PROJ/4.9.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PROJ', 'dummy': False, 'short_mod_name': 'PROJ/4.9.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.9.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libX11/1.6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libX11', 'dummy': False, 'short_mod_name': 'libX11/1.6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libXt/1.1.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libXt', 'dummy': False, 'short_mod_name': 'libXt/1.1.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.1.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Pango/1.40.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Pango', 'dummy': False, 'short_mod_name': 'Pango/1.40.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.40.1', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cairo', 'dummy': False, 'short_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'external_module': False, 'versionsuffix': '-GLib-2.48.0', 'version': '1.14.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.38-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.38-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.38', 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['lang', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': [None, "Prefix command line option for configure script ('--prefix=' if None)", (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['R', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://cran.us.r-project.org/src/base/R-%(version_major)s'], 'List of URLs for source files', (3, 'build')], 'easyblock': [None, 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --with-x=yes --with-tcltk=yes --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-recommended-packages=no', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
== 2016-06-04 01:15:10,739 templates.py:173 DEBUG version found in easyconfig is 3.3.0 | |
== 2016-06-04 01:15:10,739 templates.py:210 DEBUG name: name, config: R | |
== 2016-06-04 01:15:10,739 templates.py:210 DEBUG name: version, config: 3.3.0 | |
== 2016-06-04 01:15:10,739 templates.py:210 DEBUG name: versionsuffix, config: -bare | |
== 2016-06-04 01:15:10,739 templates.py:210 DEBUG name: versionprefix, config: | |
== 2016-06-04 01:15:10,739 easyblock.py:2133 INFO Running method fetch_step part of step fetch | |
== 2016-06-04 01:15:10,739 easyblock.py:1408 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2016-06-04 01:15:10,739 filetools.py:217 INFO Command eb found at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb | |
== 2016-06-04 01:15:10,740 tools.py:256 DEBUG Also considering installation prefix /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed... | |
== 2016-06-04 01:15:10,740 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /local/585950[3079].master19.golett.gent.vsc/eb-IcDEXQ/files_pr3079/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,740 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-2.8.1-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,740 tools.py:261 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2016-06-04 01:15:10,740 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.4.18-py2.6.egg/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,740 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-2.9.0.dev0-py2.6.egg/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,740 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-2.8.1-py2.6.egg/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,740 tools.py:265 DEBUG Added /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-2.8.1-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-2.9.0.dev0-py2.6.egg/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/MySQLdb/1.2.5-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/MySQL_python-1.2.5-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/psutil/3.4.2-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/psutil-3.4.2-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,741 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/pbs/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,742 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/async/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,743 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,743 tools.py:261 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs | |
== 2016-06-04 01:15:10,746 easyblock.py:584 INFO Found file R-3.3.0.tar.gz at /user/data/gent/vsc400/vsc40023/EasyBuild/sources/r/R/R-3.3.0.tar.gz | |
== 2016-06-04 01:15:10,746 easyblock.py:332 DEBUG File /user/data/gent/vsc400/vsc40023/EasyBuild/sources/r/R/R-3.3.0.tar.gz found for source R-3.3.0.tar.gz | |
== 2016-06-04 01:15:10,746 easyblock.py:344 INFO Added sources: [{'path': '/user/data/gent/vsc400/vsc40023/EasyBuild/sources/r/R/R-3.3.0.tar.gz', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/R/3.3.0/foss-2016a-bare', 'name': 'R-3.3.0.tar.gz', 'checksum': None}] | |
== 2016-06-04 01:15:10,746 easyblock.py:1449 INFO no patches provided | |
== 2016-06-04 01:15:10,747 filetools.py:463 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2016-06-04 01:15:10,816 easyblock.py:1458 INFO md5 checksum for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/r/R/R-3.3.0.tar.gz: 5a7506c8813432d1621c9725e86baf7a | |
== 2016-06-04 01:15:10,816 config.py:404 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules | |
== 2016-06-04 01:15:10,816 easyblock.py:1475 INFO Checking dirs that need to be created: ['/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/software/R/3.3.0-foss-2016a-bare', '/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all/R', '/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/lang/R'] | |
== 2016-06-04 01:15:10,817 filetools.py:905 INFO Creating directory /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/software/R/3.3.0-foss-2016a-bare (parents: True, set_gid: False, sticky: False) | |
== 2016-06-04 01:15:10,818 filetools.py:933 DEBUG Not creating existing path /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all/R | |
== 2016-06-04 01:15:10,819 filetools.py:933 DEBUG Not creating existing path /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/lang/R | |
== 2016-06-04 01:15:10,819 easyblock.py:2122 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
== 2016-06-04 01:15:10,819 build_log.py:227 INFO creating build dir, resetting environment... | |
== 2016-06-04 01:15:10,819 easyblock.py:2130 INFO Starting ready step | |
== 2016-06-04 01:15:10,820 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-bare', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.3.0', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[('openssl-devel', 'libssl-dev', 'libopenssl-devel', 'libicu-dev', 'libicu-devel')], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.r-project.org/', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['R is a free software environment for statistical computing and graphics.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'libreadline/6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': 'libreadline/6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpng/1.6.21-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpng', 'dummy': False, 'short_mod_name': 'libpng/1.6.21-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.21', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'dummy': False, 'short_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.4.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'LibTIFF', 'dummy': False, 'short_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.0.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Java/1.8.0_92', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'Java', 'dummy': True, 'short_mod_name': 'Java/1.8.0_92', 'external_module': False, 'versionsuffix': '', 'version': '1.8.0_92', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tcl/8.6.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tcl', 'dummy': False, 'short_mod_name': 'Tcl/8.6.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tk', 'dummy': False, 'short_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'external_module': False, 'versionsuffix': '-libX11-1.6.3', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.47.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.47.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '7.47.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libxml2/2.9.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libxml2', 'dummy': False, 'short_mod_name': 'libxml2/2.9.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.9.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.1.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PROJ/4.9.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PROJ', 'dummy': False, 'short_mod_name': 'PROJ/4.9.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.9.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libX11/1.6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libX11', 'dummy': False, 'short_mod_name': 'libX11/1.6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libXt/1.1.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libXt', 'dummy': False, 'short_mod_name': 'libXt/1.1.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.1.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Pango/1.40.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Pango', 'dummy': False, 'short_mod_name': 'Pango/1.40.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.40.1', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cairo', 'dummy': False, 'short_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'external_module': False, 'versionsuffix': '-GLib-2.48.0', 'version': '1.14.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.38-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.38-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.38', 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['lang', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': [None, "Prefix command line option for configure script ('--prefix=' if None)", (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['R', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://cran.us.r-project.org/src/base/R-%(version_major)s'], 'List of URLs for source files', (3, 'build')], 'easyblock': [None, 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --with-x=yes --with-tcltk=yes --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-recommended-packages=no', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
== 2016-06-04 01:15:10,822 templates.py:173 DEBUG version found in easyconfig is 3.3.0 | |
== 2016-06-04 01:15:10,822 templates.py:210 DEBUG name: name, config: R | |
== 2016-06-04 01:15:10,822 templates.py:210 DEBUG name: version, config: 3.3.0 | |
== 2016-06-04 01:15:10,822 templates.py:210 DEBUG name: versionsuffix, config: -bare | |
== 2016-06-04 01:15:10,822 templates.py:210 DEBUG name: versionprefix, config: | |
== 2016-06-04 01:15:10,823 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['%(name)s-%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-bare', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.3.0', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[('openssl-devel', 'libssl-dev', 'libopenssl-devel', 'libicu-dev', 'libicu-devel')], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://www.r-project.org/', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': ['R is a free software environment for statistical computing and graphics.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'libreadline/6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': 'libreadline/6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpng/1.6.21-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpng', 'dummy': False, 'short_mod_name': 'libpng/1.6.21-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.21', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'dummy': False, 'short_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.4.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'LibTIFF', 'dummy': False, 'short_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.0.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Java/1.8.0_92', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'Java', 'dummy': True, 'short_mod_name': 'Java/1.8.0_92', 'external_module': False, 'versionsuffix': '', 'version': '1.8.0_92', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tcl/8.6.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tcl', 'dummy': False, 'short_mod_name': 'Tcl/8.6.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tk', 'dummy': False, 'short_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'external_module': False, 'versionsuffix': '-libX11-1.6.3', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.47.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.47.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '7.47.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libxml2/2.9.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libxml2', 'dummy': False, 'short_mod_name': 'libxml2/2.9.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.9.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.1.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PROJ/4.9.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PROJ', 'dummy': False, 'short_mod_name': 'PROJ/4.9.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.9.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libX11/1.6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libX11', 'dummy': False, 'short_mod_name': 'libX11/1.6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libXt/1.1.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libXt', 'dummy': False, 'short_mod_name': 'libXt/1.1.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.1.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Pango/1.40.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Pango', 'dummy': False, 'short_mod_name': 'Pango/1.40.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.40.1', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cairo', 'dummy': False, 'short_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'external_module': False, 'versionsuffix': '-GLib-2.48.0', 'version': '1.14.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.38-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.38-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.38', 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['lang', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': [None, "Prefix command line option for configure script ('--prefix=' if None)", (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [None, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['R', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['BLAS_LIBS="$LIBBLAS" LAPACK_LIBS="$LIBLAPACK"', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://cran.us.r-project.org/src/base/R-%(version_major)s'], 'List of URLs for source files', (3, 'build')], 'easyblock': [None, 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'configopts': ['--with-lapack --with-blas --with-pic --enable-threads --enable-R-shlib --with-x=yes --with-tcltk=yes --with-tcl-config=$EBROOTTCL/lib/tclConfig.sh --with-tk-config=$EBROOTTK/lib/tkConfig.sh --with-cairo --with-libpng --with-jpeglib --with-libtiff --with-recommended-packages=no', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
== 2016-06-04 01:15:10,824 templates.py:173 DEBUG version found in easyconfig is 3.3.0 | |
== 2016-06-04 01:15:10,824 templates.py:210 DEBUG name: name, config: R | |
== 2016-06-04 01:15:10,824 templates.py:210 DEBUG name: version, config: 3.3.0 | |
== 2016-06-04 01:15:10,825 templates.py:210 DEBUG name: versionsuffix, config: -bare | |
== 2016-06-04 01:15:10,825 templates.py:210 DEBUG name: versionprefix, config: | |
== 2016-06-04 01:15:10,825 easyblock.py:2133 INFO Running method check_readiness_step part of step ready | |
== 2016-06-04 01:15:10,825 easyblock.py:1369 DEBUG Desired parallelism specified via 'parallel' build option: None | |
== 2016-06-04 01:15:10,826 affinity.py:209 DEBUG sched_getaffinity for pid 26773 returned cpuset 0-23 | |
== 2016-06-04 01:15:10,826 run.py:99 DEBUG run_cmd: running cmd ulimit -u (in /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023) | |
== 2016-06-04 01:15:10,834 run.py:392 DEBUG cmd "ulimit -u" exited with exitcode 0 and output: | |
257158 | |
== 2016-06-04 01:15:10,834 run.py:436 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2016-06-04 01:15:10,834 easyblock.py:1372 INFO Setting parallelism: 24 | |
== 2016-06-04 01:15:10,834 modules.py:589 DEBUG Current MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,835 modules.py:596 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2016-06-04 01:15:10,835 modules.py:596 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2016-06-04 01:15:10,835 modules.py:607 DEBUG Running module command '/bin/modulecmd python --terse list' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023 | |
== 2016-06-04 01:15:10,847 modules.py:613 DEBUG Output of module command '/bin/modulecmd python --terse list': stdout: ; stderr: Currently Loaded Modulefiles: | |
cluster/golett(default) | |
== 2016-06-04 01:15:10,848 modules.py:641 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
== 2016-06-04 01:15:10,848 modules.py:641 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2016-06-04 01:15:10,848 easyblock.py:1377 WARNING Loaded modules detected: ['cluster/golett'] | |
== 2016-06-04 01:15:10,849 easyconfig.py:594 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'libreadline/6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': 'libreadline/6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpng/1.6.21-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpng', 'dummy': False, 'short_mod_name': 'libpng/1.6.21-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.21', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'dummy': False, 'short_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.4.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'LibTIFF', 'dummy': False, 'short_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.0.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Java/1.8.0_92', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'Java', 'dummy': True, 'short_mod_name': 'Java/1.8.0_92', 'external_module': False, 'versionsuffix': '', 'version': '1.8.0_92', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tcl/8.6.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tcl', 'dummy': False, 'short_mod_name': 'Tcl/8.6.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tk', 'dummy': False, 'short_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'external_module': False, 'versionsuffix': '-libX11-1.6.3', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.47.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.47.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '7.47.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libxml2/2.9.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libxml2', 'dummy': False, 'short_mod_name': 'libxml2/2.9.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.9.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.1.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PROJ/4.9.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PROJ', 'dummy': False, 'short_mod_name': 'PROJ/4.9.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.9.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libX11/1.6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libX11', 'dummy': False, 'short_mod_name': 'libX11/1.6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libXt/1.1.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libXt', 'dummy': False, 'short_mod_name': 'libXt/1.1.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.1.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Pango/1.40.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Pango', 'dummy': False, 'short_mod_name': 'Pango/1.40.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.40.1', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cairo', 'dummy': False, 'short_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'external_module': False, 'versionsuffix': '-GLib-2.48.0', 'version': '1.14.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.38-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.38-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.38', 'hidden': False, 'build_only': False}] | |
== 2016-06-04 01:15:10,849 toolchain.py:359 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'libreadline/6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': 'libreadline/6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpng/1.6.21-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpng', 'dummy': False, 'short_mod_name': 'libpng/1.6.21-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.21', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'dummy': False, 'short_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.4.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'LibTIFF', 'dummy': False, 'short_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.0.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Java/1.8.0_92', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'Java', 'dummy': True, 'short_mod_name': 'Java/1.8.0_92', 'external_module': False, 'versionsuffix': '', 'version': '1.8.0_92', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tcl/8.6.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tcl', 'dummy': False, 'short_mod_name': 'Tcl/8.6.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tk', 'dummy': False, 'short_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'external_module': False, 'versionsuffix': '-libX11-1.6.3', 'version': '8.6.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.47.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.47.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '7.47.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libxml2/2.9.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libxml2', 'dummy': False, 'short_mod_name': 'libxml2/2.9.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.9.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.1.0', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PROJ/4.9.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PROJ', 'dummy': False, 'short_mod_name': 'PROJ/4.9.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.9.2', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libX11/1.6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libX11', 'dummy': False, 'short_mod_name': 'libX11/1.6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.3', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libXt/1.1.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libXt', 'dummy': False, 'short_mod_name': 'libXt/1.1.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.1.5', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'Pango/1.40.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Pango', 'dummy': False, 'short_mod_name': 'Pango/1.40.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.40.1', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cairo', 'dummy': False, 'short_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'external_module': False, 'versionsuffix': '-GLib-2.48.0', 'version': '1.14.6', 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.38-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.38-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.38', 'hidden': False, 'build_only': False}] | |
== 2016-06-04 01:15:10,849 modules.py:406 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'modulecmd', '')': ['ABINIT/7.10.5-intel-2016.02-GCC-4.9', 'ABINIT/7.10.5-intel-2016.02-GCC-4.9_libxc', 'ABySS/1.9.0-foss-2016a', 'ADF/2014.11.r48287-intel-2016a', 'AFNI/20160329-intel-2016a-Python-2.7.11', 'ALPS/2.2.b4-intel-2016a-Python-2.7.11', 'ANTLR/2.7.7-foss-2016a-Python-2.7.11', 'ASE/3.9.1.4567-intel-2016a-Python-2.7.11', 'ATK/2.18.0-intel-2016a', 'ATK/2.20.0-intel-2016a', 'Autoconf/2.69', 'Autoconf/2.69-GCC-4.9.2', 'Autoconf/2.69-GCC-4.9.3-2.25', 'Autoconf/2.69-GNU-4.9.3-2.25', 'Autoconf/2.69-foss-2015a', 'Autoconf/2.69-foss-2016a', 'Autoconf/2.69-intel-2016a', 'Automake/1.14-intel-2016a', 'Automake/1.15', 'Automake/1.15-GCC-4.9.2', 'Automake/1.15-GCC-4.9.3-2.25', 'Automake/1.15-GNU-4.9.3-2.25', 'Automake/1.15-foss-2015a', 'Automake/1.15-foss-2016a', 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'zlib/1.2.8-intel-2015a', 'zlib/1.2.8-intel-2016a', 'zlibbioc/1.18.0-intel-2016a-R-3.2.3'] | |
== 2016-06-04 01:15:10,851 modules.py:589 DEBUG Current MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,851 modules.py:596 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2016-06-04 01:15:10,851 modules.py:596 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2016-06-04 01:15:10,851 modules.py:607 DEBUG Running module command '/bin/modulecmd python show Pango/1.40.1-foss-2016a' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023 | |
== 2016-06-04 01:15:10,864 modules.py:613 DEBUG Output of module command '/bin/modulecmd python show Pango/1.40.1-foss-2016a': stdout: ; stderr: ModuleCmd_Display.c(151):ERROR:105: Unable to locate a modulefile for 'Pango/1.40.1-foss-2016a' | |
== 2016-06-04 01:15:10,864 modules.py:526 DEBUG Cached result for 'module show Pango/1.40.1-foss-2016a' with key '('MODULEPATH=/user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'modulecmd', 'Pango/1.40.1-foss-2016a')': ModuleCmd_Display.c(151):ERROR:105: Unable to locate a modulefile for 'Pango/1.40.1-foss-2016a' | |
== 2016-06-04 01:15:10,865 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,865 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'libreadline/6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libreadline', 'dummy': False, 'short_mod_name': 'libreadline/6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '6.3', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,865 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,866 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'libpng/1.6.21-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpng', 'dummy': False, 'short_mod_name': 'libpng/1.6.21-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.21', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,866 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,866 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libjpeg-turbo', 'dummy': False, 'short_mod_name': 'libjpeg-turbo/1.4.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.4.2', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,866 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,866 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'LibTIFF', 'dummy': False, 'short_mod_name': 'LibTIFF/4.0.6-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.0.6', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,866 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,866 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'Java/1.8.0_92', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'Java', 'dummy': True, 'short_mod_name': 'Java/1.8.0_92', 'external_module': False, 'versionsuffix': '', 'version': '1.8.0_92', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,866 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,866 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'Tcl/8.6.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tcl', 'dummy': False, 'short_mod_name': 'Tcl/8.6.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.6.5', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,867 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,867 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Tk', 'dummy': False, 'short_mod_name': 'Tk/8.6.5-foss-2016a-libX11-1.6.3', 'external_module': False, 'versionsuffix': '-libX11-1.6.3', 'version': '8.6.5', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,867 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,867 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'cURL/7.47.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cURL', 'dummy': False, 'short_mod_name': 'cURL/7.47.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '7.47.0', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,867 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,867 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'libxml2/2.9.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libxml2', 'dummy': False, 'short_mod_name': 'libxml2/2.9.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.9.3', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,867 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,867 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'GDAL/2.1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'GDAL', 'dummy': False, 'short_mod_name': 'GDAL/2.1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '2.1.0', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,867 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,867 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'PROJ/4.9.2-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PROJ', 'dummy': False, 'short_mod_name': 'PROJ/4.9.2-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '4.9.2', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,868 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,868 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'libX11/1.6.3-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libX11', 'dummy': False, 'short_mod_name': 'libX11/1.6.3-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.6.3', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,868 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,868 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'libXt/1.1.5-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libXt', 'dummy': False, 'short_mod_name': 'libXt/1.1.5-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.1.5', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,868 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,868 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,868 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'cairo', 'dummy': False, 'short_mod_name': 'cairo/1.14.6-foss-2016a-GLib-2.48.0', 'external_module': False, 'versionsuffix': '-GLib-2.48.0', 'version': '1.14.6', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,868 toolchain.py:376 DEBUG add_dependencies: MODULEPATH: /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2016-06-04 01:15:10,868 toolchain.py:379 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'PCRE/8.38-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'PCRE', 'dummy': False, 'short_mod_name': 'PCRE/8.38-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '8.38', 'hidden': False, 'build_only': False} | |
== 2016-06-04 01:15:10,869 build_log.py:152 ERROR Missing modules for one or more dependencies: Pango/1.40.1-foss-2016a (at easybuild/tools/toolchain/toolchain.py:384 in add_dependencies) | |
== 2016-06-04 01:15:10,870 easyblock.py:2362 WARNING build failed (first 300 chars): Missing modules for one or more dependencies: Pango/1.40.1-foss-2016a | |
== 2016-06-04 01:15:10,870 easyblock.py:270 INFO Closing log for application name R version 3.3.0 |
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