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EasyBuild test report for easyconfigs PR #9560
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easybuild_test_report_easyconfigs_pr9560_20191820-UTC-09-18-17.md

Test report for easybuilders/easybuild-easyconfigs#9560

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS CSBDeep-0.4.1-foss-2019a-Python-3.7.2.eb

Time info

  • start: Fri, 20 Dec 2019 09:17:47 +0000 (UTC)
  • end: Fri, 20 Dec 2019 09:18:17 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.0.1-re1078892dcd0cd6ee65ab668f63abe92dba37cb3
  • easybuild-easyblocks version: 4.0.1-r42535c0aecf34830a275e7f95b91ac3b154055bc
  • command line:
eb --github-user branfosj -Tdfur --from-pr 9560 CSBDeep-0.4.1-foss-2019a-Python-3.7.2.eb
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/dev/shm/build-branfosj-admin/branfosj-admin-1'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/rds/homes/b/branfosj-admin/.local/easybuild/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-only
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--force
--from-pr='9560'
--github-user='branfosj'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--installpath='/rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/rds/bear-apps/devel/2019b/branfosj-eb-1/src/easybuild-easyconfigs/easybuild/easyconfigs'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Tcl'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='EnvironmentModulesC'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/rds/homes/b/branfosj-admin/.local/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pr-target-repo='easybuild-easyconfigs'
--pre-create-installdir
--repository='FileRepository'
--repositorypath='/rds/homes/b/branfosj-admin/.local/easybuild/ebfiles_repo'
--robot-paths=''
--robot='/rds/bear-apps/devel/2019b/branfosj-eb-1/src/easybuild-easyconfigs/easybuild/easyconfigs'
--sourcepath='/rds/bear-sysadmin/configmgmt/easybuild/sources/'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--test-report-env-filter='^SSH.*|USER|HOSTNAME|UID|.*COOKIE.*|.*LICENSE.*|EB_.*'
--tmpdir='/scratch/branfosj-admin'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'

System info

  • core count: 8
  • cpu model: Intel(R) Xeon(R) Gold 6248 CPU @ 2.50GHz
  • cpu speed: 3900.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-39) (GCC) ;
  • glibc version: 2.17
  • hostname: bear-pg0211u03a.bear.cluster
  • os name: centos linux
  • os type: Linux
  • os version: 7.7.1908
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Aug 7 2019, 00:51:29) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-39)]
  • system gcc path: /bin/gcc
  • system python path: /rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake/venv-dev-2019b-1/bin/python
  • total memory: 192926

List of loaded modules

  • bb-variables/13
  • slurm-moab-wrappers/2
  • slurm-helpers/3
  • openmpi-env/5
  • bear-licences/7
  • bb-singularity-conf/1
  • bluebear/21
  • eb-conf/2019b

Environment

ALLINEA_LICENCE_DIR = /rds/bear-apps/system/software/bear-licences/arm
ARMCI_OPENIB_DEVICE = mlx5_0
BASH_FUNC_module() = () {  eval `/usr/bin/modulecmd bash $*`
}
BB_APPS_DATA = /rds/bear-apps/apps-data/
BB_CPU = cascadelake
BB_EXAMPLES = /rds/bear-apps/EXAMPLES/
BB_FALLBACKCPU = haswell
BB_GPGPUS = 0
BB_IB_DETECTED = 1
BB_MACHINE = Metal
BB_OFED = 4.7.1.0.0
BB_OSBASE = EL7
EASYBUILD_BUILDPATH = /dev/shm/build-branfosj-admin/branfosj-admin-1
EASYBUILD_INSTALLPATH = /rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake
EASYBUILD_MODULES_TOOL = EnvironmentModulesC
EASYBUILD_MODULE_SYNTAX = Tcl
EASYBUILD_SOURCEPATH = /rds/bear-sysadmin/configmgmt/easybuild/sources/
EASYBUILD_TEST_REPORT_ENV_FILTER = ^SSH.*|USER|HOSTNAME|UID|.*COOKIE.*|.*LICENSE.*|EB_.*
EASYBUILD_TMPDIR = /scratch/branfosj-admin
EDITOR = /usr/bin/vim
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000000
HOME = /rds/homes/b/branfosj-admin
LANG = en_GB.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LIBGL_ALWAYS_INDIRECT = y
LOADEDMODULES = bb-variables/13:slurm-moab-wrappers/2:slurm-helpers/3:openmpi-env/5:bear-licences/7:bb-singularity-conf/1:bluebear/21:eb-conf/2019b
LOGNAME = branfosj-admin
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
MAIL = /var/spool/mail/branfosj-admin
MANPATH = /usr/share/Modules/share/man:/usr/share/man:/usr/local/share/man
MODULEPATH = /rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake/modules/:/rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake/modules/all:/usr/share/Modules/modulefiles:/etc/modulefiles:/rds/bear-apps/system/modules
MODULESHOME = /usr/share/Modules
NAG_KUSARI_FILE = bear-licsrv-nag.bear.cluster:28102
OMPI_MCA_btl_openib_if_include = mlx5_0:1
OMPI_MCA_btl_tcp_if_exclude = 169.0.0.0/8,147.188.0.0/16
OMP_NUM_THREADS = 1
PATH = /rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake/venv-dev-2019b-1/bin:/rds/bear-apps/bin:/rds/bear-apps/system/software/slurm-helpers:/rds/bear-apps/system/software/slurm-moab-wrappers/:/usr/lpp/mmfs/bin:/usr/lib64/qt-3.3/bin:/usr/lpp/mmfs/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/rds/bear-sysadmin/tools/apps-scripts/fisbatch:/rds/homes/b/branfosj-admin/.local/bin:/rds/homes/b/branfosj-admin/bin:/rds/bear-sysadmin/tools/apps-scripts/fisbatch:/rds/bear-sysadmin/tools/apps-scripts/
PWD = /rds/bear-apps/devel/2019b/branfosj-eb-1/src/easybuild-easyconfigs/easybuild/easyconfigs
PYTHONOPTIMIZE = 1
QTDIR = /usr/lib64/qt-3.3
QTINC = /usr/lib64/qt-3.3/include
QTLIB = /usr/lib64/qt-3.3/lib
QT_GRAPHICSSYSTEM_CHECKED = 1
SHELL = /bin/bash
SHLVL = 3
SINGULARITY_CACHEDIR = /scratch/branfosj-admin/singularity
SINGULARITY_DOCKER_ARCHITECTURE = x86_64
SINGULARITY_TMPDIR = /scratch/branfosj-admin/singularity
SLURMD_NODENAME = bear-pg0211u03a
SLURM_CLUSTER_NAME = paddington
SLURM_CPUS_ON_NODE = 8
SLURM_GTIDS = 0
SLURM_JOBID = 8384837
SLURM_JOB_ACCOUNT = edmondac-rescomp-software
SLURM_JOB_CPUS_PER_NODE = 8
SLURM_JOB_GID = 10045
SLURM_JOB_ID = 8384837
SLURM_JOB_NAME = FISBATCH
SLURM_JOB_NODELIST = bear-pg0211u03a
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = cascadelake-build
SLURM_JOB_QOS = build
SLURM_LOCALID = 0
SLURM_MEM_PER_CPU = 4096
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = bear-pg0211u03a
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 8
SLURM_NTASKS = 8
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_SUBMIT_DIR = /rds/bear-apps/devel/2019b/branfosj-eb-1/src/easybuild-easyconfigs/easybuild/easyconfigs
SLURM_SUBMIT_HOST = bb-pg-login02
SLURM_TASKS_PER_NODE = 8
SLURM_TASK_PID = 83762
SLURM_TOPOLOGY_ADDR = ibc-pg0209u[22,21,23].pg_edr_00e2ec80.bear-pg0211u03a
SLURM_TOPOLOGY_ADDR_PATTERN = switch.switch.node
SLURM_WORKING_CLUSTER = paddington:sdslurm.bear.cluster:6817:8704:101
STY = 83762.slurm8384837
SYS_TYPE = cascadelake-EL7
TERM = screen
TERMCAP = SC|screen|VT 100/ANSI X3.64 virtual terminal:\
	:DO=\E[%dB:LE=\E[%dD:RI=\E[%dC:UP=\E[%dA:bs:bt=\E[Z:\
	:cd=\E[J:ce=\E[K:cl=\E[H\E[J:cm=\E[%i%d;%dH:ct=\E[3g:\
	:do=^J:nd=\E[C:pt:rc=\E8:rs=\Ec:sc=\E7:st=\EH:up=\EM:\
	:le=^H:bl=^G:cr=^M:it#8:ho=\E[H:nw=\EE:ta=^I:is=\E)0:\
	:li#24:co#80:am:xn:xv:LP:sr=\EM:al=\E[L:AL=\E[%dL:\
	:cs=\E[%i%d;%dr:dl=\E[M:DL=\E[%dM:dc=\E[P:DC=\E[%dP:\
	:im=\E[4h:ei=\E[4l:mi:IC=\E[%d@:ks=\E[?1h\E=:\
	:ke=\E[?1l\E>:vi=\E[?25l:ve=\E[34h\E[?25h:vs=\E[34l:\
	:ti=\E[?1049h:te=\E[?1049l:Km=\E[M:k0=\E[10~:k1=\EOP:\
	:k2=\EOQ:k3=\EOR:k4=\EOS:k5=\E[15~:k6=\E[17~:k7=\E[18~:\
	:k8=\E[19~:k9=\E[20~:k;=\E[21~:F1=\E[23~:F2=\E[24~:\
	:kh=\E[1~:@1=\E[1~:kH=\E[4~:@7=\E[4~:kN=\E[6~:kP=\E[5~:\
	:kI=\E[2~:kD=\E[3~:ku=\EOA:kd=\EOB:kr=\EOC:kl=\EOD:
VIRTUAL_ENV = /rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake/venv-dev-2019b-1
WINDOW = 0
XAUTHORITY = /rds/homes/b/branfosj-admin/.Xauthority
XDG_RUNTIME_DIR = /run/user/606524
XDG_SESSION_ID = c2182
_ = /rds/bear-apps/devel/2019b/branfosj-eb-1/EL7/EL7-cascadelake/venv-dev-2019b-1/bin/python
_LMFILES_ = /rds/bear-apps/system/modules/bb-variables/13:/rds/bear-apps/system/modules/slurm-moab-wrappers/2:/rds/bear-apps/system/modules/slurm-helpers/3:/rds/bear-apps/system/modules/openmpi-env/5:/rds/bear-apps/system/modules/bear-licences/7:/rds/bear-apps/system/modules/bb-singularity-conf/1:/rds/bear-apps/system/modules/bluebear/21:/rds/bear-apps/system/modules/eb-conf/2019b
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