Created
September 19, 2021 21:14
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(partial) EasyBuild log for failed build of /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb (PR(s) #14017)
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== 2021-09-19 21:57:34,374 easyblock.py:285 INFO This is EasyBuild 4.4.2.dev0 (framework: 4.4.2.dev0, easyblocks: 4.4.2.dev0) on host nuc.lan. | |
== 2021-09-19 21:57:34,374 easyblock.py:291 INFO This is easyblock CmdCp from module easybuild.easyblocks.generic.cmdcp (/mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/lib/python3.9/site-packages/easybuild/easyblocks/generic/cmdcp.py) | |
== 2021-09-19 21:57:34,374 easyblock.py:937 INFO Build dir set to /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,374 config.py:618 DEBUG software install path as specified by 'installpath' and 'subdir_software': /mnt/ds918plus/eb/nuc-fedora32/software | |
== 2021-09-19 21:57:34,374 easyconfig.py:2612 DEBUG Determining software installation subdir for Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,374 easyconfig.py:2615 DEBUG Using fixed naming software installation subdir: Ninja/1.10.2-GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,374 easyblock.py:997 INFO Software install dir set to /mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,374 config.py:618 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /mnt/ds918plus/eb/nuc-fedora32/modules | |
== 2021-09-19 21:57:34,374 easyblock.py:1002 INFO Module install dir set to /mnt/ds918plus/eb/nuc-fedora32/modules/all | |
== 2021-09-19 21:57:34,374 easyblock.py:270 INFO Init completed for application name Ninja version 1.10.2 | |
== 2021-09-19 21:57:34,374 easyblock.py:3676 INFO Obtained application instance of for Ninja (easyblock: CmdCp) | |
== 2021-09-19 21:57:34,374 easyblock.py:3689 DEBUG Skip set to False | |
== 2021-09-19 21:57:34,374 easyconfig.py:1661 INFO Generating template values... | |
== 2021-09-19 21:57:34,374 templates.py:189 DEBUG config: Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,375 templates.py:216 DEBUG version found in easyconfig is 1.10.2 | |
== 2021-09-19 21:57:34,375 systemtools.py:1061 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-09-19 21:57:34,375 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,375 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,375 templates.py:318 DEBUG name: name, config: Ninja | |
== 2021-09-19 21:57:34,375 templates.py:318 DEBUG name: parallel, config: None | |
== 2021-09-19 21:57:34,375 templates.py:318 DEBUG name: version, config: 1.10.2 | |
== 2021-09-19 21:57:34,375 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-09-19 21:57:34,375 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-09-19 21:57:34,375 easyconfig.py:1680 INFO Template values: arch='x86_64', bitbucket_account='ninja', github_account='ninja', module_name='Ninja/1.10.2-GCCcore-11.2.0', name='Ninja', nameletter='N', nameletterlower='n', namelower='ninja', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.10.2', version_major='1', version_major_minor='1.10', version_minor='10', versionprefix='', versionsuffix='' | |
== 2021-09-19 21:57:34,375 one.py:145 DEBUG Not copying '__builtins__' variable from parsed easyconfig | |
== 2021-09-19 21:57:34,376 one.py:524 DEBUG Extracted comments: | |
{'above': {}, 'header': [], 'inline': {}, 'iterabove': {}, 'iterinline': {}, 'tail': []} | |
== 2021-09-19 21:57:34,376 one.py:175 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2021-09-19 21:57:34,376 easyconfig.py:1227 DEBUG Dumped easyconfig: easyblock = 'CmdCp' | |
name = 'Ninja' | |
version = '1.10.2' | |
homepage = 'https://ninja-build.org/' | |
description = "Ninja is a small build system with a focus on speed." | |
toolchain = {'name': 'GCCcore', 'version': '11.2.0'} | |
source_urls = ['https://github.com/%(namelower)s-build/%(namelower)s/archive/'] | |
sources = ['v%(version)s.tar.gz'] | |
checksums = ['ce35865411f0490368a8fc383f29071de6690cbadc27704734978221f25e2bed'] | |
builddependencies = [ | |
('binutils', '2.37'), | |
('Python', '3.9.6'), | |
] | |
files_to_copy = [(['%(namelower)s'], 'bin')] | |
cmds_map = [('.*', './configure.py --bootstrap')] | |
sanity_check_paths = { | |
'files': ['bin/%(namelower)s'], | |
'dirs': [], | |
} | |
sanity_check_commands = ['%(namelower)s --version'] | |
moduleclass = 'tools' | |
== 2021-09-19 21:57:34,376 filetools.py:1783 INFO Creating directory /tmp/eb-_npsx0wt/reprod_20210919215734_3386416 (parents: True, set_gid: False, sticky: False) | |
== 2021-09-19 21:57:34,376 easyblock.py:3922 INFO Dumped easyconfig instance to /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,376 filetools.py:1783 INFO Creating directory /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks (parents: True, set_gid: False, sticky: False) | |
== 2021-09-19 21:57:34,377 filetools.py:2294 INFO /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/lib/python3.9/site-packages/easybuild/easyblocks/generic/cmdcp.py copied to /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks/cmdcp.py | |
== 2021-09-19 21:57:34,377 easyblock.py:3902 INFO Dumped easyblock cmdcp.py required for reproduction to /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks | |
== 2021-09-19 21:57:34,377 filetools.py:1802 DEBUG Not creating existing path /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks | |
== 2021-09-19 21:57:34,378 filetools.py:2294 INFO /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/lib/python3.9/site-packages/easybuild/easyblocks/generic/makecp.py copied to /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks/makecp.py | |
== 2021-09-19 21:57:34,378 easyblock.py:3902 INFO Dumped easyblock makecp.py required for reproduction to /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks | |
== 2021-09-19 21:57:34,378 filetools.py:1802 DEBUG Not creating existing path /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks | |
== 2021-09-19 21:57:34,379 filetools.py:2294 INFO /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/lib/python3.9/site-packages/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks/configuremake.py | |
== 2021-09-19 21:57:34,379 easyblock.py:3902 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-_npsx0wt/reprod_20210919215734_3386416/easyblocks | |
== 2021-09-19 21:57:34,403 easyblock.py:1786 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2021-09-19 21:57:34,403 build_log.py:265 INFO building and installing Ninja/1.10.2-GCCcore-11.2.0... | |
== 2021-09-19 21:57:34,403 config.py:618 DEBUG software install path as specified by 'installpath' and 'subdir_software': /mnt/ds918plus/eb/nuc-fedora32/software | |
== 2021-09-19 21:57:34,403 filetools.py:1876 INFO Lock /mnt/ds918plus/eb/nuc-fedora32/software/.locks/_mnt_ds918plus_eb_nuc-fedora32_software_Ninja_1.10.2-GCCcore-11.2.0.lock does not exist | |
== 2021-09-19 21:57:34,404 config.py:618 DEBUG software install path as specified by 'installpath' and 'subdir_software': /mnt/ds918plus/eb/nuc-fedora32/software | |
== 2021-09-19 21:57:34,404 filetools.py:1817 INFO Creating lock at /mnt/ds918plus/eb/nuc-fedora32/software/.locks/_mnt_ds918plus_eb_nuc-fedora32_software_Ninja_1.10.2-GCCcore-11.2.0.lock... | |
== 2021-09-19 21:57:34,404 filetools.py:1783 INFO Creating directory /mnt/ds918plus/eb/nuc-fedora32/software/.locks/_mnt_ds918plus_eb_nuc-fedora32_software_Ninja_1.10.2-GCCcore-11.2.0.lock (parents: True, set_gid: False, sticky: False) | |
== 2021-09-19 21:57:34,404 filetools.py:1826 INFO Lock created: /mnt/ds918plus/eb/nuc-fedora32/software/.locks/_mnt_ds918plus_eb_nuc-fedora32_software_Ninja_1.10.2-GCCcore-11.2.0.lock | |
== 2021-09-19 21:57:34,404 easyblock.py:3416 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-09-19 21:57:34,404 build_log.py:265 INFO fetching files... | |
== 2021-09-19 21:57:34,405 easyblock.py:3425 INFO Starting fetch step | |
== 2021-09-19 21:57:34,405 easyconfig.py:1661 INFO Generating template values... | |
== 2021-09-19 21:57:34,405 templates.py:189 DEBUG config: Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,405 templates.py:216 DEBUG version found in easyconfig is 1.10.2 | |
== 2021-09-19 21:57:34,405 systemtools.py:1061 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-09-19 21:57:34,405 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,405 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,405 templates.py:318 DEBUG name: name, config: Ninja | |
== 2021-09-19 21:57:34,405 templates.py:318 DEBUG name: parallel, config: None | |
== 2021-09-19 21:57:34,405 templates.py:318 DEBUG name: version, config: 1.10.2 | |
== 2021-09-19 21:57:34,405 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-09-19 21:57:34,405 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-09-19 21:57:34,405 easyconfig.py:1680 INFO Template values: arch='x86_64', bitbucket_account='ninja', builddir='/mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0', github_account='ninja', installdir='/mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0', module_name='Ninja/1.10.2-GCCcore-11.2.0', name='Ninja', nameletter='N', nameletterlower='n', namelower='ninja', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.10.2', version_major='1', version_major_minor='1.10', version_minor='10', versionprefix='', versionsuffix='' | |
== 2021-09-19 21:57:34,405 easyblock.py:3433 INFO Running method fetch_step part of step fetch | |
== 2021-09-19 21:57:34,405 easyblock.py:1907 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2021-09-19 21:57:34,406 tools.py:271 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/bin/eb | |
== 2021-09-19 21:57:34,406 tools.py:285 INFO Also considering installation prefix /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev (determined via path to 'eb' script)... | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /home/adam/src/easybuild/local/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /home/adam/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-_npsx0wt/files_pr14017/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-_npsx0wt/fake_vsc_35dlkgaj/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /home/adam/src/github/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.9/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/lib/python3.9/site-packages/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /home/adam/.local/lib/python3.9/site-packages/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/site-packages/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.9/site-packages/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.9/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:300 DEBUG Checking for easybuild/easyconfigs at /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,406 tools.py:304 DEBUG Added /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2021-09-19 21:57:34,447 easyblock.py:761 INFO Found file v1.10.2.tar.gz at /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz | |
== 2021-09-19 21:57:34,448 easyblock.py:389 DEBUG File /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz found for source v1.10.2.tar.gz | |
== 2021-09-19 21:57:34,448 easyblock.py:432 INFO Added sources: [{'name': 'v1.10.2.tar.gz', 'path': '/mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz', 'cmd': None, 'checksum': 'ce35865411f0490368a8fc383f29071de6690cbadc27704734978221f25e2bed', 'finalpath': '/mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0'}] | |
== 2021-09-19 21:57:34,448 easyblock.py:1948 INFO no patches provided | |
== 2021-09-19 21:57:34,448 filetools.py:1179 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-09-19 21:57:34,490 easyblock.py:1958 INFO md5 checksum for /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz: 639f75bc2e3b19ab893eaf2c810d4eb4 | |
== 2021-09-19 21:57:34,490 filetools.py:1179 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-09-19 21:57:34,494 easyblock.py:1958 INFO sha256 checksum for /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz: ce35865411f0490368a8fc383f29071de6690cbadc27704734978221f25e2bed | |
== 2021-09-19 21:57:34,494 easyconfig.py:2599 DEBUG Determining full module name for Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb (force_visible: False) | |
== 2021-09-19 21:57:34,495 easyconfig.py:2576 DEBUG No alternative software name specified to determine module name with | |
== 2021-09-19 21:57:34,495 utilities.py:102 DEBUG Module name Ninja/1.10.2-GCCcore-11.2.0 validated | |
== 2021-09-19 21:57:34,495 easyconfig.py:2607 DEBUG Obtained valid full module name Ninja/1.10.2-GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,496 config.py:618 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /mnt/ds918plus/eb/nuc-fedora32/modules | |
== 2021-09-19 21:57:34,496 easyblock.py:1993 INFO Checking dirs that need to be created: ['/mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0', '/mnt/ds918plus/eb/nuc-fedora32/modules/all/Ninja', '/mnt/ds918plus/eb/nuc-fedora32/modules/tools/Ninja'] | |
== 2021-09-19 21:57:34,496 filetools.py:1802 DEBUG Not creating existing path /mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,496 filetools.py:1802 DEBUG Not creating existing path /mnt/ds918plus/eb/nuc-fedora32/modules/all/Ninja | |
== 2021-09-19 21:57:34,497 filetools.py:1802 DEBUG Not creating existing path /mnt/ds918plus/eb/nuc-fedora32/modules/tools/Ninja | |
== 2021-09-19 21:57:34,498 filetools.py:1179 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-09-19 21:57:34,498 configuremake.py:93 INFO config.guess version: 2018-08-29 (last updated: 2021-08-25T17:20:35.635668, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
== 2021-09-19 21:57:34,498 configuremake.py:149 INFO Found config.guess at /mnt/ds918plus/eb/common/sources/generic/eb_v4.4.2.dev0/ConfigureMake/config.guess | |
== 2021-09-19 21:57:34,498 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-09-19 21:57:34,498 easyblock.py:3416 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-09-19 21:57:34,499 build_log.py:265 INFO creating build dir, resetting environment... | |
== 2021-09-19 21:57:34,499 easyblock.py:3425 INFO Starting ready step | |
== 2021-09-19 21:57:34,499 easyconfig.py:1661 INFO Generating template values... | |
== 2021-09-19 21:57:34,499 templates.py:189 DEBUG config: Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,499 templates.py:216 DEBUG version found in easyconfig is 1.10.2 | |
== 2021-09-19 21:57:34,499 systemtools.py:1061 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-09-19 21:57:34,499 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,499 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,499 templates.py:318 DEBUG name: name, config: Ninja | |
== 2021-09-19 21:57:34,499 templates.py:318 DEBUG name: parallel, config: None | |
== 2021-09-19 21:57:34,499 templates.py:318 DEBUG name: version, config: 1.10.2 | |
== 2021-09-19 21:57:34,499 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-09-19 21:57:34,499 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-09-19 21:57:34,499 easyconfig.py:1680 INFO Template values: arch='x86_64', bitbucket_account='ninja', builddir='/mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0', github_account='ninja', installdir='/mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0', module_name='Ninja/1.10.2-GCCcore-11.2.0', name='Ninja', nameletter='N', nameletterlower='n', namelower='ninja', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.10.2', version_major='1', version_major_minor='1.10', version_minor='10', versionprefix='', versionsuffix='' | |
== 2021-09-19 21:57:34,500 easyblock.py:3433 INFO Running method check_readiness_step part of step ready | |
== 2021-09-19 21:57:34,500 easyblock.py:1802 DEBUG Desired parallelism specified via 'parallel' build option: None | |
== 2021-09-19 21:57:34,504 systemtools.py:184 DEBUG sched_getaffinity for pid 3386416 successful | |
== 2021-09-19 21:57:34,505 run.py:85 DEBUG Using cached value for command 'ulimit -u': ('127753\n', 0) | |
== 2021-09-19 21:57:34,505 easyblock.py:1805 INFO Setting parallelism: 8 | |
== 2021-09-19 21:57:34,505 modules.py:804 DEBUG Current MODULEPATH: /mnt/ds918plus/eb/nuc-fedora32/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2021-09-19 21:57:34,505 modules.py:818 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /home/adam/src/github/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2021-09-19 21:57:34,537 modules.py:825 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: import os | |
os.environ["MODULEPATH"] = "/mnt/ds918plus/eb/nuc-fedora32/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "b2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: EasyBuild/20210825-dev | |
== 2021-09-19 21:57:34,537 modules.py:1366 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
== 2021-09-19 21:57:34,537 easyblock.py:1856 WARNING Loaded modules detected: ['EasyBuild/20210825-dev'] | |
== 2021-09-19 21:57:34,538 easyblock.py:3433 INFO Running method make_builddir part of step ready | |
== 2021-09-19 21:57:34,538 easyblock.py:947 DEBUG Creating the build directory /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 (cleanup: True) | |
== 2021-09-19 21:57:34,552 easyblock.py:1022 INFO Found old directory /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,723 filetools.py:359 INFO Path /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 successfully removed. | |
== 2021-09-19 21:57:34,723 easyblock.py:1030 INFO Removed old directory /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,724 filetools.py:1783 INFO Creating directory /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 (parents: True, set_gid: False, sticky: False) | |
== 2021-09-19 21:57:34,725 easyblock.py:3433 INFO Running method reset_env part of step ready | |
== 2021-09-19 21:57:34,726 easyblock.py:3433 INFO Running method handle_iterate_opts part of step ready | |
== 2021-09-19 21:57:34,726 easyconfig.py:1661 INFO Generating template values... | |
== 2021-09-19 21:57:34,727 templates.py:189 DEBUG config: Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,727 templates.py:216 DEBUG version found in easyconfig is 1.10.2 | |
== 2021-09-19 21:57:34,728 systemtools.py:1061 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-09-19 21:57:34,728 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,728 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,728 templates.py:318 DEBUG name: name, config: Ninja | |
== 2021-09-19 21:57:34,729 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-09-19 21:57:34,729 templates.py:318 DEBUG name: version, config: 1.10.2 | |
== 2021-09-19 21:57:34,729 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-09-19 21:57:34,729 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-09-19 21:57:34,730 easyconfig.py:1680 INFO Template values: arch='x86_64', bitbucket_account='ninja', builddir='/mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0', github_account='ninja', installdir='/mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0', module_name='Ninja/1.10.2-GCCcore-11.2.0', name='Ninja', nameletter='N', nameletterlower='n', namelower='ninja', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.10.2', version_major='1', version_major_minor='1.10', version_minor='10', versionprefix='', versionsuffix='' | |
== 2021-09-19 21:57:34,730 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-09-19 21:57:34,731 easyblock.py:3416 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-09-19 21:57:34,731 build_log.py:265 INFO unpacking... | |
== 2021-09-19 21:57:34,731 easyblock.py:3425 INFO Starting source step | |
== 2021-09-19 21:57:34,731 easyconfig.py:1661 INFO Generating template values... | |
== 2021-09-19 21:57:34,732 templates.py:189 DEBUG config: Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,732 templates.py:216 DEBUG version found in easyconfig is 1.10.2 | |
== 2021-09-19 21:57:34,732 systemtools.py:1061 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-09-19 21:57:34,733 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,733 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,733 templates.py:318 DEBUG name: name, config: Ninja | |
== 2021-09-19 21:57:34,733 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-09-19 21:57:34,734 templates.py:318 DEBUG name: version, config: 1.10.2 | |
== 2021-09-19 21:57:34,734 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-09-19 21:57:34,734 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-09-19 21:57:34,734 easyconfig.py:1680 INFO Template values: arch='x86_64', bitbucket_account='ninja', builddir='/mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0', github_account='ninja', installdir='/mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0', module_name='Ninja/1.10.2-GCCcore-11.2.0', name='Ninja', nameletter='N', nameletterlower='n', namelower='ninja', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.10.2', version_major='1', version_major_minor='1.10', version_minor='10', versionprefix='', versionsuffix='' | |
== 2021-09-19 21:57:34,734 easyblock.py:3433 INFO Running method checksum_step part of step source | |
== 2021-09-19 21:57:34,735 filetools.py:1179 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2021-09-19 21:57:34,737 filetools.py:1252 DEBUG Computed sha256 checksum for /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz: ce35865411f0490368a8fc383f29071de6690cbadc27704734978221f25e2bed (correct checksum: ce35865411f0490368a8fc383f29071de6690cbadc27704734978221f25e2bed) | |
== 2021-09-19 21:57:34,737 easyblock.py:2009 INFO Checksum verification for /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz using ce35865411f0490368a8fc383f29071de6690cbadc27704734978221f25e2bed passed. | |
== 2021-09-19 21:57:34,737 easyblock.py:3433 INFO Running method extract_step part of step source | |
== 2021-09-19 21:57:34,737 easyblock.py:2101 INFO Unpacking source v1.10.2.tar.gz | |
== 2021-09-19 21:57:34,738 filetools.py:1802 DEBUG Not creating existing path /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,738 filetools.py:435 DEBUG Unpacking /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz in directory /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0 | |
== 2021-09-19 21:57:34,739 run.py:214 DEBUG run_cmd: running cmd tar xzf /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz (in /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0) | |
== 2021-09-19 21:57:34,739 run.py:233 INFO running cmd: tar xzf /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz | |
== 2021-09-19 21:57:34,899 run.py:584 DEBUG cmd "tar xzf /mnt/ds918plus/eb/common/sources/n/Ninja/v1.10.2.tar.gz" exited with exit code 0 and output: | |
== 2021-09-19 21:57:34,899 run.py:618 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2021-09-19 21:57:34,900 filetools.py:1306 DEBUG Last dir list ['CMakeLists.txt', 'CONTRIBUTING.md', 'COPYING', 'README.md', 'RELEASING', 'appveyor.yml', 'configure.py', 'doc', 'misc', 'src'] | |
== 2021-09-19 21:57:34,900 filetools.py:1307 DEBUG Possible new dir /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0/ninja-1.10.2 found | |
== 2021-09-19 21:57:34,901 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-09-19 21:57:34,901 easyblock.py:3416 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-09-19 21:57:34,901 build_log.py:265 INFO patching... | |
== 2021-09-19 21:57:34,901 easyblock.py:3425 INFO Starting patch step | |
== 2021-09-19 21:57:34,901 easyconfig.py:1661 INFO Generating template values... | |
== 2021-09-19 21:57:34,901 templates.py:189 DEBUG config: Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,901 templates.py:216 DEBUG version found in easyconfig is 1.10.2 | |
== 2021-09-19 21:57:34,901 systemtools.py:1061 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-09-19 21:57:34,901 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,901 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,901 templates.py:318 DEBUG name: name, config: Ninja | |
== 2021-09-19 21:57:34,901 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-09-19 21:57:34,901 templates.py:318 DEBUG name: version, config: 1.10.2 | |
== 2021-09-19 21:57:34,901 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-09-19 21:57:34,901 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-09-19 21:57:34,902 easyconfig.py:1680 INFO Template values: arch='x86_64', bitbucket_account='ninja', builddir='/mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0', github_account='ninja', installdir='/mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0', module_name='Ninja/1.10.2-GCCcore-11.2.0', name='Ninja', nameletter='N', nameletterlower='n', namelower='ninja', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.10.2', version_major='1', version_major_minor='1.10', version_minor='10', versionprefix='', versionsuffix='' | |
== 2021-09-19 21:57:34,902 easyblock.py:3433 INFO Running method patch_step part of step patch | |
== 2021-09-19 21:57:34,902 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-09-19 21:57:34,902 easyblock.py:3416 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2021-09-19 21:57:34,902 build_log.py:265 INFO preparing... | |
== 2021-09-19 21:57:34,902 easyblock.py:3425 INFO Starting prepare step | |
== 2021-09-19 21:57:34,902 easyconfig.py:1661 INFO Generating template values... | |
== 2021-09-19 21:57:34,902 templates.py:189 DEBUG config: Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,902 templates.py:216 DEBUG version found in easyconfig is 1.10.2 | |
== 2021-09-19 21:57:34,902 systemtools.py:1061 DEBUG Version is already a string ('3.9.6'), OK | |
== 2021-09-19 21:57:34,902 templates.py:318 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,902 templates.py:318 DEBUG name: github_account, config: %(namelower)s | |
== 2021-09-19 21:57:34,902 templates.py:318 DEBUG name: name, config: Ninja | |
== 2021-09-19 21:57:34,902 templates.py:318 DEBUG name: parallel, config: 8 | |
== 2021-09-19 21:57:34,902 templates.py:318 DEBUG name: version, config: 1.10.2 | |
== 2021-09-19 21:57:34,902 templates.py:318 DEBUG name: versionsuffix, config: | |
== 2021-09-19 21:57:34,902 templates.py:318 DEBUG name: versionprefix, config: | |
== 2021-09-19 21:57:34,902 easyconfig.py:1680 INFO Template values: arch='x86_64', bitbucket_account='ninja', builddir='/mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0', github_account='ninja', installdir='/mnt/ds918plus/eb/nuc-fedora32/software/Ninja/1.10.2-GCCcore-11.2.0', module_name='Ninja/1.10.2-GCCcore-11.2.0', name='Ninja', nameletter='N', nameletterlower='n', namelower='ninja', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', toolchain_name='GCCcore', toolchain_version='11.2.0', version='1.10.2', version_major='1', version_major_minor='1.10', version_minor='10', versionprefix='', versionsuffix='' | |
== 2021-09-19 21:57:34,902 easyblock.py:3433 INFO Running method prepare_step part of step prepare | |
== 2021-09-19 21:57:34,903 easyconfig.py:2667 DEBUG Determining initial module paths for Ninja EasyConfig @ /mnt/ds918plus/eb/nuc-fedora32/software/EasyBuild/20210825-dev/easybuild/easyconfigs/n/Ninja/Ninja-1.10.2-GCCcore-11.2.0.eb | |
== 2021-09-19 21:57:34,903 easyconfig.py:2669 DEBUG Obtained initial module paths: [] | |
== 2021-09-19 21:57:34,903 easyconfig.py:1106 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'binutils/2.37-GCCcore-11.2.0', 'short_mod_name': 'binutils/2.37-GCCcore-11.2.0', 'name': 'binutils', 'version': '2.37', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'short_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'name': 'Python', 'version': '3.9.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}] | |
== 2021-09-19 21:57:34,903 easyconfig.py:1109 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'binutils/2.37-GCCcore-11.2.0', 'short_mod_name': 'binutils/2.37-GCCcore-11.2.0', 'name': 'binutils', 'version': '2.37', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'short_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'name': 'Python', 'version': '3.9.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}] | |
== 2021-09-19 21:57:34,903 toolchain.py:521 DEBUG _check_dependencies: adding toolchain dependencies [{'full_mod_name': 'binutils/2.37-GCCcore-11.2.0', 'short_mod_name': 'binutils/2.37-GCCcore-11.2.0', 'name': 'binutils', 'version': '2.37', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'short_mod_name': 'Python/3.9.6-GCCcore-11.2.0', 'name': 'Python', 'version': '3.9.6', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '11.2.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}] | |
== 2021-09-19 21:57:34,903 toolchain.py:531 DEBUG _check_dependencies: MODULEPATH: /mnt/ds918plus/eb/nuc-fedora32/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2021-09-19 21:57:34,903 modules.py:482 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/mnt/ds918plus/eb/nuc-fedora32/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', '--show-hidden')': ['ABRA2/2.23-GCC-9.3.0', 'AOCC/3.0.0-GCCcore-10.2.0', 'AOCC/3.0.0-GCCcore-10.3.0', 'AOCC/3.1.0-GCCcore-10.2.0', 'AOCC/3.1.0-GCCcore-10.3.0', 'APR-util/1.6.1-GCCcore-10.3.0', 'APR/1.7.0-GCCcore-10.3.0', 'ASE/3.21.1-foss-2020b', 'ASE/3.22.0-foss-2021a', 'ATK/2.34.1-GCCcore-8.3.0', 'ATK/2.36.0-GCCcore-10.2.0', 'ATK/2.36.0-GCCcore-9.3.0', 'Arb/2.19.0-GCC-10.3.0', 'Archive-Zip/1.68-GCCcore-10.2.0', 'Archive-Zip/1.68-GCCcore-10.3.0', 'Armadillo/10.5.3-foss-2020b', 'Arriba/2.1.0-GCC-10.3.0', 'AutoGeneS/1.0.4-foss-2020b', 'Autoconf/2.69-GCCcore-10.2.0', 'Autoconf/2.69-GCCcore-8.2.0', 'Autoconf/2.69-GCCcore-8.3.0', 'Autoconf/2.69-GCCcore-9.3.0', 'Autoconf/2.71-GCCcore-10.3.0', 'Autoconf/2.71-GCCcore-11.2.0', 'Automake/1.16.1-GCCcore-8.2.0', 'Automake/1.16.1-GCCcore-8.3.0', 'Automake/1.16.1-GCCcore-9.3.0', 'Automake/1.16.2-GCCcore-10.2.0', 'Automake/1.16.3-GCCcore-10.3.0', 'Automake/1.16.4-GCCcore-11.2.0', 'Autotools/20180311-GCCcore-8.2.0', 'Autotools/20180311-GCCcore-8.3.0', 'Autotools/20180311-GCCcore-9.3.0', 'Autotools/20200321-GCCcore-10.2.0', 'Autotools/20210128-GCCcore-10.3.0', 'Autotools/20210726-GCCcore-11.2.0', 'BAMSurgeon/1.2-GCC-8.3.0-Python-2.7.16', 'BAli-Phy/3.6.0', 'BCFtools/1.10.2-GCC-8.3.0', 'BCFtools/1.12-GCC-10.2.0', 'BCFtools/1.12-GCC-9.3.0', 'BEDTools/2.29.2-GCC-8.3.0', 'BEDTools/2.29.2-GCC-9.3.0', 'BEDTools/2.30.0-GCC-10.2.0', 'BEDTools/2.30.0-GCC-10.3.0', 'BLAST+/2.10.1-gompi-2020a', 'BLAST+/2.11.0-gompi-2019b', 'BLAST+/2.11.0-gompi-2020a', 'BLAST+/2.11.0-gompi-2020b', 'BLAST+/2.9.0-gompi-2019a', 'BLAST+/2.9.0-gompi-2019b', 'BLAST/2.10.1-Linux_x86_64', 'BLAT/3.5-GCC-8.2.0-2.31.1', 'BLAT/3.5-GCC-8.3.0', 'BLAT/3.5-GCC-9.3.0', 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'numba/0.50.0-foss-2020a-Python-3.8.2', 'numba/0.52.0-foss-2020b', 'numba/0.53.1-foss-2020b', 'numba/0.53.1-foss-2021a', 'octopus-vcf/0.7.1-foss-2020b', 'octopus/0.7.1-foss-2020b', 'openCARP/5.0-foss-2020b', 'openpyxl/2.6.4-GCCcore-8.3.0-Python-2.7.16', 'openpyxl/3.0.7-GCCcore-10.2.0', 'openpyxl/3.0.7-GCCcore-10.3.0', 'orca/1.3.1-GCCcore-9.3.0', 'pandapower/2.7.0-foss-2020b', 'parallel/20190922-GCCcore-8.3.0', 'parallel/20200522-GCCcore-9.3.0', 'parallel/20210322-GCCcore-10.2.0', 'parasail/2.4.1-foss-2019b', 'patchelf/0.12-GCCcore-9.3.0', 'petsc4py/3.15.0-foss-2021a', 'phonemizer/2.2.1-gompi-2020a-Python-3.8.2', 'picard/2.21.6-Java-11', 'picard/2.25.0-Java-11', 'pigz/2.4-GCCcore-8.3.0', 'pigz/2.4-GCCcore-9.3.0', 'pigz/2.6-GCCcore-10.2.0', 'pixman/0.38.0-GCCcore-8.2.0', 'pixman/0.38.4-GCCcore-8.3.0', 'pixman/0.38.4-GCCcore-9.3.0', 'pixman/0.40.0-GCCcore-10.2.0', 'pixman/0.40.0-GCCcore-10.3.0', 'pkg-config/0.29.2', 'pkg-config/0.29.2-GCCcore-10.2.0', 'pkg-config/0.29.2-GCCcore-10.3.0', 'pkg-config/0.29.2-GCCcore-11.2.0', 'pkg-config/0.29.2-GCCcore-8.2.0', 'pkg-config/0.29.2-GCCcore-8.3.0', 'pkg-config/0.29.2-GCCcore-9.3.0', 'pkgconfig/1.5.1-GCCcore-10.2.0-python', 'pkgconfig/1.5.1-GCCcore-8.3.0-Python-3.7.4', 'pkgconfig/1.5.1-GCCcore-9.3.0-Python-3.8.2', 'pkgconfig/1.5.4-GCCcore-10.3.0-python', 'plinkQC/0.3.3-foss-2020a-R-4.0.0', 'plotly.py/5.1.0-GCCcore-10.3.0', 'pocl/1.6-GCC-10.2.0', 'poetry/1.0.9-GCCcore-9.3.0-Python-3.8.2', 'poetry/1.1.3-GCCcore-9.3.0-Python-3.8.2', 'pplacer/1.1.alpha19', 'pretty-yaml/20.4.0-GCCcore-9.3.0', 'prodigal/2.6.3-GCCcore-10.2.0', 'prodigal/2.6.3-GCCcore-9.3.0', 'protobuf-python/3.10.0-foss-2019b-Python-3.7.4', 'protobuf-python/3.10.0-fosscuda-2019b-Python-3.7.4', 'protobuf-python/3.13.0-foss-2020a-Python-3.8.2', 'protobuf-python/3.13.0-fosscuda-2020a-Python-3.8.2', 'protobuf-python/3.14.0-GCCcore-10.2.0', 'protobuf/2.5.0', 'protobuf/3.10.0-GCCcore-8.3.0', 'protobuf/3.13.0-GCCcore-9.3.0', 'protobuf/3.14.0-GCCcore-10.2.0', 'psycopg2/2.8.6-GCCcore-9.3.0-Python-3.8.2', 'py-aiger/6.1.14-GCCcore-10.2.0', 'pyEGA3/3.4.0-GCCcore-8.3.0-Python-3.7.4', 'pyEGA3/3.4.0-GCCcore-9.3.0-Python-3.8.2', 'pybedtools/0.8.1-GCC-9.3.0-Python-3.8.2', 'pybedtools/0.8.1-foss-2019b', 'pybedtools/0.8.2-GCC-10.2.0', 'pybedtools/0.8.2-GCC-10.2.0-Python-2.7.18', 'pybind11/2.4.3-GCCcore-8.3.0-Python-3.7.4', 'pybind11/2.4.3-GCCcore-9.3.0-Python-3.8.2', 'pybind11/2.6.0-GCCcore-10.2.0', 'pybind11/2.6.2-GCCcore-10.3.0', 'pycoQC/2.5.2-foss-2021a', 'pydicom/2.1.2-GCCcore-10.2.0', 'pydicom/2.1.2-GCCcore-8.3.0-Python-3.7.4', 'pydicom/2.1.2-GCCcore-9.3.0-Python-3.8.2', 'pydot/1.4.2-GCCcore-10.2.0', 'pydot/1.4.2-GCCcore-9.3.0', 'pylift/0.1.5-foss-2020a-Python-3.8.2', 'pyobjcryst/2.1.0.post2-foss-2020a-Python-3.8.2', 'pyproj/2.6.1.post1-GCCcore-9.3.0-Python-3.8.2', 'pyspoa/0.0.4-GCC-8.3.0-Python-3.7.4', 'pyspoa/0.0.8-GCC-10.2.0', 'pytest-xdist/2.1.0-GCCcore-10.2.0', 'python-Levenshtein/0.12.1-foss-2020b', 'python-igraph/0.9.0-foss-2020b', 'python-igraph/0.9.0-fosscuda-2020b', 'python-igraph/0.9.6-foss-2021a', 'python-isal/0.11.0-GCCcore-10.3.0', 'python-parasail/1.2-foss-2019b-Python-3.7.4', 'qcat/1.1.0-foss-2019b-Python-3.7.4', 'qrupdate/1.1.2-GCCcore-10.2.0', 'rasterio/1.1.7-foss-2020a-Python-3.8.2', 'rclone/1.54.1-amd64', 're2c/1.2.1-GCCcore-8.3.0', 're2c/1.3-GCCcore-9.3.0', 're2c/2.0.3-GCCcore-10.2.0', 're2c/2.2-GCCcore-11.2.0', 'rgdal/1.5-16-foss-2020a-R-4.0.0', 'rgdal/1.5-23-foss-2020b-R-4.0.4', 'rgdal/1.5-23-foss-2021a-R-4.1.0', 'rgeos/0.5-5-foss-2020a-R-4.0.0', 'rgeos/0.5-5-foss-2021a-R-4.1.0', 'rioxarray/0.1.1-foss-2020a-Python-3.8.2', 'rjags/4-10-foss-2020a-R-4.0.0', 'rjags/4-10-foss-2020b-R-4.0.3', 'rjags/4-10-foss-2020b-R-4.0.4', 'rjags/4-10-foss-2020b-R-4.0.5', 'rjags/4-10-foss-2021a-R-4.1.0', 'samclip/0.4.0-GCCcore-10.2.0', 'scGeneFit/1.0.2-foss-2021a', 'scanpy/1.8.1-foss-2020b', 'scanpy/1.8.1-foss-2021a', 'scikit-build/0.10.0-foss-2020a-Python-3.8.2', 'scikit-build/0.11.1-foss-2020b', 'scikit-image/0.18.1-foss-2020b', 'scikit-learn/0.20.4-foss-2020b-Python-2.7.18', 'scikit-learn/0.21.3-foss-2019b-Python-3.7.4', 'scikit-learn/0.23.1-foss-2020a-Python-3.8.2', 'scikit-learn/0.23.2-foss-2020b', 'scikit-learn/0.23.2-fosscuda-2020b', 'scikit-learn/0.24.2-foss-2021a', 'scikit-optimize/0.8.1-foss-2020a-Python-3.8.2', 'scikit-uplift/0.2.0-foss-2020a-Python-3.8.2', 'scipy/1.4.1-foss-2019b-Python-3.7.4', 'segemehl/0.3.4-GCC-10.2.0', 'seqtk/1.3-GCC-10.2.0', 'settarg', 'sf/0.9-5-foss-2020a-R-4.0.0-Python-3.8.2', 'shovill/1.1.0-foss-2020b-Python-2.7.18', 'shrinkwrap/1.1.0-GCCcore-10.2.0', 'slepc4py/3.15.1-foss-2021a', 'smithwaterman/20160702-GCCcore-9.3.0', 'snappy/1.1.7-GCCcore-8.2.0', 'snappy/1.1.7-GCCcore-8.3.0', 'snappy/1.1.8-GCCcore-10.2.0', 'snappy/1.1.8-GCCcore-9.3.0', 'snpEff/5.0-Java-13', 'sonic/20180202-gompi-2020a', 'spatialreg/1.1-8-foss-2021a-R-4.1.0', 'speech_tools/2.5.0-GCCcore-9.3.0', 'spglib-python/1.16.0-foss-2020b', 'spglib-python/1.16.1-foss-2021a', 'spoa/4.0.0-GCC-8.3.0', 'spoa/4.0.7-GCC-10.2.0', 'stars/0.4-3-foss-2020a-R-4.0.0-Python-3.8.2', 'statsmodels/0.11.1-foss-2020a-Python-3.8.2', 'statsmodels/0.12.1-foss-2020b', 'statsmodels/0.12.2-foss-2021a', 'stpipeline/1.7.6-foss-2019b-Python-3.7.4', 'sympy/1.5.1-foss-2019b-Python-3.7.4', 'sympy/1.6.2-foss-2020a-Python-3.8.2', 'sympy/1.7.1-foss-2020b', 'tabixpp/1.1.0-GCC-9.3.0', 'tbb/2019_U4-GCCcore-8.2.0', 'tbb/2019_U9-GCCcore-8.3.0', 'tbb/2020.1-GCCcore-9.3.0', 'tbb/2020.3-GCCcore-10.2.0', 'tbb/2021.2.0-GCCcore-10.3.0', 'tcsh/6.22.02-GCCcore-8.3.0', 'tcsh/6.22.02-GCCcore-9.3.0', 'terastructure/1.0-GCC-8.3.0', 'texinfo/6.7-GCCcore-10.2.0', 'texinfo/6.7-GCCcore-9.3.0', 'time/1.9-GCCcore-10.3.0', 'time/1.9-GCCcore-8.3.0', 'time/1.9-GCCcore-9.3.0', 'tmux/3.2-GCCcore-9.3.0', 'tqdm/4.41.1-GCCcore-8.3.0', 'tqdm/4.47.0-GCCcore-9.3.0', 'tqdm/4.56.2-GCCcore-10.2.0', 'tqdm/4.60.0-GCCcore-9.3.0', 'tqdm/4.61.1-GCCcore-10.3.0', 'tqdm/4.61.2-GCCcore-10.3.0', 'treatSens/3.0-20201002-foss-2020a-R-4.0.0', 'typing-extensions/3.7.4.3-GCCcore-10.2.0', 'utf8proc/2.6.1-GCCcore-10.3.0', 'util-linux/2.33-GCCcore-8.2.0', 'util-linux/2.34-GCCcore-8.3.0', 'util-linux/2.35-GCCcore-9.3.0', 'util-linux/2.36-GCCcore-10.2.0', 'util-linux/2.36-GCCcore-10.3.0', 'util-linux/2.37-GCCcore-11.2.0', 'vcflib/1.0.2-GCC-9.3.0-Python-3.8.2', 'velocyto/0.17.17-foss-2021a', 'vsc-mympirun/5.2.2', 'vt/0.57721-GCC-10.2.0', 'wandb/0.8.30-gcccuda-2019b-Python-3.7.4', 'x264/20190925-GCCcore-8.3.0', 'x264/20191217-GCCcore-9.3.0', 'x264/20201026-GCCcore-10.2.0', 'x265/3.2-GCCcore-8.3.0', 'x265/3.3-GCCcore-10.2.0', 'x265/3.3-GCCcore-9.3.0', 'xarray/0.15.1-foss-2019b-Python-3.7.4', 'xarray/0.16.1-foss-2020a-Python-3.8.2', 'xarray/0.16.2-foss-2020b', 'xorg-macros/1.19.2-GCCcore-10.2.0', 'xorg-macros/1.19.2-GCCcore-8.2.0', 'xorg-macros/1.19.2-GCCcore-8.3.0', 'xorg-macros/1.19.2-GCCcore-9.3.0', 'xorg-macros/1.19.3-GCCcore-10.3.0', 'xorg-macros/1.19.3-GCCcore-11.2.0', 'xprop/1.2.4-GCCcore-8.3.0', 'xprop/1.2.4-GCCcore-9.3.0', 'xprop/1.2.5-GCCcore-10.2.0', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-10.2.0', 'zlib/1.2.11-GCCcore-10.3.0', 'zlib/1.2.11-GCCcore-11.1.0', 'zlib/1.2.11-GCCcore-11.2.0', 'zlib/1.2.11-GCCcore-8.2.0', 'zlib/1.2.11-GCCcore-8.3.0', 'zlib/1.2.11-GCCcore-8.4.0', 'zlib/1.2.11-GCCcore-9.3.0', 'zstd/1.4.0-GCCcore-8.2.0', 'zstd/1.4.4-GCCcore-9.3.0', 'zstd/1.4.5-GCCcore-10.2.0', 'zstd/1.4.9-GCCcore-10.3.0'] | |
== 2021-09-19 21:57:34,904 modules.py:618 INFO Checking whether binutils/2.37-GCCcore-11.2.0 exists... | |
== 2021-09-19 21:57:34,904 modules.py:623 INFO Module binutils/2.37-GCCcore-11.2.0 exists (found in list of available modules) | |
== 2021-09-19 21:57:34,904 modules.py:646 INFO Result for existence check of binutils/2.37-GCCcore-11.2.0 module: True | |
== 2021-09-19 21:57:34,904 modules.py:618 INFO Checking whether Python/3.9.6-GCCcore-11.2.0 exists... | |
== 2021-09-19 21:57:34,904 modules.py:625 INFO Module Python/3.9.6-GCCcore-11.2.0 not found in list of available modules, checking via 'module show'... | |
== 2021-09-19 21:57:34,904 modules.py:562 DEBUG Checking whether Python/3.9.6-GCCcore-11.2.0 exists based on output of 'module show' | |
== 2021-09-19 21:57:34,904 modules.py:804 DEBUG Current MODULEPATH: /mnt/ds918plus/eb/nuc-fedora32/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2021-09-19 21:57:34,905 modules.py:818 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show Python/3.9.6-GCCcore-11.2.0' from /mnt/ds918plus/eb/nuc-fedora32/build/Ninja/1.10.2/GCCcore-11.2.0/ninja-1.10.2 | |
== 2021-09-19 21:57:35,146 modules.py:825 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show Python/3.9.6-GCCcore-11.2.0': stdout: import os | |
os.environ["MODULEPATH"] = "/mnt/ds918plus/eb/nuc-fedora32/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "b2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMiLCIvdXNyL3NoYXJlL21vZHVsZWZpbGVzIiwiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eCIsIi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZSIsIi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0sWyJzeXN0ZW1CYXNlTVBBVEgiXT0iL2V0Yy9tb2R1bGVmaWxlczovdXNyL3NoYXJlL21vZHVsZWZpbGVzOi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvTGludXg6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9Db3JlOi91c3Ivc2hhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: | |
== 2021-09-19 21:57:35,146 modules.py:713 DEBUG Cached result for 'module show Python/3.9.6-GCCcore-11.2.0' with key '('MODULEPATH=/mnt/ds918plus/eb/nuc-fedora32/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'Python/3.9.6-GCCcore-11.2.0')': | |
== 2021-09-19 21:57:35,147 modules.py:572 DEBUG Checking line '' to determine whether Python/3.9.6-GCCcore-11.2.0 exists... | |
== 2021-09-19 21:57:35,147 modules.py:576 DEBUG Treating line '' as whitespace, so skipping it | |
== 2021-09-19 21:57:35,147 modules.py:639 INFO Module Python/3.9.6-GCCcore-11.2.0 not found via module avail/show, checking whether it is a wrapper | |
== 2021-09-19 21:57:35,147 modules.py:646 INFO Result for existence check of Python/3.9.6-GCCcore-11.2.0 module: False | |
== 2021-09-19 21:57:35,149 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Missing modules for dependencies (use --robot?): Python/3.9.6-GCCcore-11.2.0 (at easybuild/tools/toolchain/toolchain.py:557 in _check_dependencies) | |
== 2021-09-19 21:57:35,149 build_log.py:265 INFO ... (took < 1 sec) | |
== 2021-09-19 21:57:35,149 config.py:618 DEBUG software install path as specified by 'installpath' and 'subdir_software': /mnt/ds918plus/eb/nuc-fedora32/software | |
== 2021-09-19 21:57:35,149 filetools.py:1884 INFO Removing lock /mnt/ds918plus/eb/nuc-fedora32/software/.locks/_mnt_ds918plus_eb_nuc-fedora32_software_Ninja_1.10.2-GCCcore-11.2.0.lock... | |
== 2021-09-19 21:57:35,151 filetools.py:359 INFO Path /mnt/ds918plus/eb/nuc-fedora32/software/.locks/_mnt_ds918plus_eb_nuc-fedora32_software_Ninja_1.10.2-GCCcore-11.2.0.lock successfully removed. | |
== 2021-09-19 21:57:35,151 filetools.py:1888 INFO Lock removed: /mnt/ds918plus/eb/nuc-fedora32/software/.locks/_mnt_ds918plus_eb_nuc-fedora32_software_Ninja_1.10.2-GCCcore-11.2.0.lock | |
== 2021-09-19 21:57:35,151 easyblock.py:3725 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): Python/3.9.6-GCCcore-11.2.0 | |
== 2021-09-19 21:57:35,151 easyblock.py:300 INFO Closing log for application name Ninja version 1.10.2 |
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