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boegel/binutils-2.27-GCCcore-6.3.0_partial.log

Created January 4, 2017 14:11
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(partial) EasyBuild log for failed build of /tmp/eb-nkl3do/files_pr3968/b/binutils/binutils-2.27-GCCcore-6.3.0.eb (PR #3968)
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binutils-2.27-GCCcore-6.3.0_partial.log
== 2017-01-04 15:11:28,708 easyblock.py:261 INFO This is EasyBuild 3.0.2 (framework: 3.0.2, easyblocks: 3.0.2) on host node2519.golett.os.
== 2017-01-04 15:11:28,709 easyblock.py:267 INFO This is easyblock EB_binutils from module easybuild.easyblocks.binutils (/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyblocks/b/binutils.pyo)
== 2017-01-04 15:11:28,709 easyblock.py:753 INFO Build dir set to /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0
== 2017-01-04 15:11:28,709 config.py:423 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software
== 2017-01-04 15:11:28,709 easyconfig.py:1650 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:28,709 easyconfig.py:1656 DEBUG Obtained subdir binutils/2.27-GCCcore-6.3.0
== 2017-01-04 15:11:28,709 easyblock.py:792 INFO Software install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/binutils/2.27-GCCcore-6.3.0
== 2017-01-04 15:11:28,710 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules
== 2017-01-04 15:11:28,710 easyblock.py:797 INFO Module install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all
== 2017-01-04 15:11:28,710 easyblock.py:246 INFO Init completed for application name binutils version 2.27
== 2017-01-04 15:11:28,710 easyblock.py:2477 INFO Obtained application instance of for binutils (easyblock: None)
== 2017-01-04 15:11:28,710 easyblock.py:2490 DEBUG Skip set to False
== 2017-01-04 15:11:28,710 build_log.py:216 INFO building and installing binutils/2.27-GCCcore-6.3.0...
== 2017-01-04 15:11:28,710 easyblock.py:2263 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 15:11:28,710 build_log.py:216 INFO fetching files...
== 2017-01-04 15:11:28,711 easyblock.py:2271 INFO Starting fetch step
== 2017-01-04 15:11:28,711 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:28,711 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:28,711 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:28,711 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:28,711 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:28,711 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:28,711 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:28,712 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:28,712 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:28,712 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:28,712 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:28,712 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:28,712 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:28,712 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:28,712 easyblock.py:2274 INFO Running method fetch_step part of step fetch
== 2017-01-04 15:11:28,712 easyblock.py:1446 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2017-01-04 15:11:28,713 filetools.py:237 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb
== 2017-01-04 15:11:28,713 tools.py:261 DEBUG Also considering installation prefix /user/data/gent/vsc400/vsc40023/easybuild_easy_installed...
== 2017-01-04 15:11:28,713 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2017-01-04 15:11:28,713 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-nkl3do/files_pr3968/easybuild/easyconfigs
== 2017-01-04 15:11:28,713 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
== 2017-01-04 15:11:28,713 tools.py:266 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2017-01-04 15:11:28,713 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.5-py2.7.egg/easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_install-0.10.20-py2.7.egg/easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.0.2.dev0-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:270 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/MySQLdb/1.2.5-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/MySQL_python-1.2.5-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/psutil/3.4.2-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/psutil-3.4.2-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2017-01-04 15:11:28,714 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
== 2017-01-04 15:11:28,715 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
== 2017-01-04 15:11:28,716 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 15:11:28,716 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 15:11:28,716 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/pbs/easybuild/easyconfigs
== 2017-01-04 15:11:28,716 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 15:11:28,716 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2017-01-04 15:11:28,716 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
== 2017-01-04 15:11:28,717 easyblock.py:590 INFO Found file binutils-2.27.tar.gz at /user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz
== 2017-01-04 15:11:28,718 easyblock.py:338 DEBUG File /user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz found for source binutils-2.27.tar.gz
== 2017-01-04 15:11:28,718 easyblock.py:350 INFO Added sources: [{'path': '/user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0', 'name': 'binutils-2.27.tar.gz', 'checksum': None}]
== 2017-01-04 15:11:28,718 easyblock.py:1487 INFO no patches provided
== 2017-01-04 15:11:28,718 filetools.py:514 DEBUG Using blocksize 16777216 for calculating the checksum
== 2017-01-04 15:11:28,799 easyblock.py:1496 INFO md5 checksum for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz: 41b053ed4fb2c6a8173ef421460fbb28
== 2017-01-04 15:11:28,799 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules
== 2017-01-04 15:11:28,799 easyblock.py:1513 INFO Checking dirs that need to be created: ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/binutils/2.27-GCCcore-6.3.0', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/binutils', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/tools/binutils']
== 2017-01-04 15:11:28,800 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/binutils/2.27-GCCcore-6.3.0
== 2017-01-04 15:11:28,800 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/binutils
== 2017-01-04 15:11:28,801 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/tools/binutils
== 2017-01-04 15:11:28,802 easyblock.py:2263 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 15:11:28,802 build_log.py:216 INFO creating build dir, resetting environment...
== 2017-01-04 15:11:28,802 easyblock.py:2271 INFO Starting ready step
== 2017-01-04 15:11:28,802 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:28,802 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:28,802 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:28,803 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:28,803 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:28,803 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:28,803 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:28,803 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:28,803 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:28,803 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:28,803 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:28,804 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:28,804 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:28,804 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:28,804 easyblock.py:2274 INFO Running method check_readiness_step part of step ready
== 2017-01-04 15:11:28,804 easyblock.py:1401 DEBUG Desired parallelism specified via 'parallel' build option: None
== 2017-01-04 15:11:28,805 affinity.py:209 DEBUG sched_getaffinity for pid 19678 returned cpuset 0-23
== 2017-01-04 15:11:28,805 run.py:86 DEBUG Using cached value for command 'ulimit -u': ('4096\n', 0)
== 2017-01-04 15:11:28,805 easyblock.py:1404 INFO Setting parallelism: 24
== 2017-01-04 15:11:28,805 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 15:11:28,805 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2017-01-04 15:11:28,806 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2017-01-04 15:11:28,806 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /vscmnt/gent_vulpix/_/user/home/gent/vsc400/vsc40023/2017a
== 2017-01-04 15:11:28,838 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr: cluster/golett
== 2017-01-04 15:11:28,838 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2017-01-04 15:11:28,838 modules.py:682 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2017-01-04 15:11:28,839 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2017-01-04 15:11:28,839 modules.py:682 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2017-01-04 15:11:28,839 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2017-01-04 15:11:28,839 easyblock.py:1409 WARNING Loaded modules detected: ['cluster/golett']
== 2017-01-04 15:11:28,839 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'flex', 'dummy': False, 'short_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '2.6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'Bison', 'dummy': False, 'short_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '1.2.10', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'binutils/2.27', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'binutils', 'dummy': True, 'short_mod_name': 'binutils/2.27', 'external_module': False, 'versionsuffix': '', 'version': '2.27', 'toolchain_inherited': False, 'hidden': False, 'build_only': True}]
== 2017-01-04 15:11:28,839 toolchain.py:375 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'flex', 'dummy': False, 'short_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '2.6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'Bison', 'dummy': False, 'short_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '1.2.10', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'binutils/2.27', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'binutils', 'dummy': True, 'short_mod_name': 'binutils/2.27', 'external_module': False, 'versionsuffix': '', 'version': '2.27', 'toolchain_inherited': False, 'hidden': False, 'build_only': True}]
== 2017-01-04 15:11:28,840 modules.py:418 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'lmod', '--show-hidden')': ['3to2/1.1.1-intel-2016b-Python-2.7.12', 'ABINIT/8.0.8b-intel-2016b', 'ART/2016.06.05-intel-2016b', 'ASE/3.11.0-intel-2016b-Python-2.7.12', 'ATK/2.22.0-intel-2016b', 'Autoconf/2.69-foss-2016b', 'Autoconf/2.69-foss-2017a', 'Autoconf/2.69-intel-2016b', 'Automake/1.15-foss-2016b', 'Automake/1.15-foss-2017a', 'Automake/1.15-intel-2016b', 'Autotools/20150215-foss-2016b', 'Autotools/20150215-foss-2017a', 'Autotools/20150215-intel-2016b', 'BBMap/36.62-intel-2016b-Java-1.8.0_112', 'BEDTools/2.26.0-intel-2016b', 'BWA/0.7.15-intel-2016b', 'BamTools/2.4.0-foss-2016b', 'BamUtil/1.0.13-intel-2016b', 'BioPerl/1.7.0-foss-2016b-Perl-5.24.0', 'Biopython/1.68-foss-2016b-Python-2.7.12', 'Biopython/1.68-intel-2016b-Python-2.7.12', 'Biopython/1.68-intel-2016b-Python-3.5.2', 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== 2017-01-04 15:11:28,841 toolchain.py:392 DEBUG add_dependencies: MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 15:11:28,841 toolchain.py:395 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'flex', 'dummy': False, 'short_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '2.6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}
== 2017-01-04 15:11:28,841 toolchain.py:392 DEBUG add_dependencies: MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 15:11:28,841 toolchain.py:395 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'Bison', 'dummy': False, 'short_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}
== 2017-01-04 15:11:28,841 toolchain.py:392 DEBUG add_dependencies: MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 15:11:28,841 toolchain.py:395 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '1.2.10', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}
== 2017-01-04 15:11:28,842 toolchain.py:392 DEBUG add_dependencies: MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 15:11:28,842 toolchain.py:395 DEBUG add_dependencies: added toolchain dependency {'external_module_metadata': {}, 'full_mod_name': 'binutils/2.27', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'binutils', 'dummy': True, 'short_mod_name': 'binutils/2.27', 'external_module': False, 'versionsuffix': '', 'version': '2.27', 'toolchain_inherited': False, 'hidden': False, 'build_only': True}
== 2017-01-04 15:11:28,842 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'flex', 'dummy': False, 'short_mod_name': 'flex/2.6.3-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '2.6.3', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'Bison', 'dummy': False, 'short_mod_name': 'Bison/3.0.4-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '3.0.4', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'toolchain': {'version': '6.3.0', 'name': 'GCCcore'}, 'name': 'zlib', 'dummy': False, 'short_mod_name': 'zlib/1.2.10-GCCcore-6.3.0', 'external_module': False, 'versionsuffix': '', 'version': '1.2.10', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}, {'external_module_metadata': {}, 'full_mod_name': 'binutils/2.27', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'binutils', 'dummy': True, 'short_mod_name': 'binutils/2.27', 'external_module': False, 'versionsuffix': '', 'version': '2.27', 'toolchain_inherited': False, 'hidden': False, 'build_only': True}]
== 2017-01-04 15:11:28,842 easyblock.py:1437 INFO Removing existing module file /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/binutils/2.27-GCCcore-6.3.0.lua
== 2017-01-04 15:11:28,845 easyblock.py:2274 INFO Running method make_builddir part of step ready
== 2017-01-04 15:11:28,845 easyblock.py:763 DEBUG Creating the build directory /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0 (cleanup: True)
== 2017-01-04 15:11:28,845 filetools.py:967 INFO Creating directory /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0 (parents: True, set_gid: False, sticky: False)
== 2017-01-04 15:11:28,846 easyblock.py:2274 INFO Running method env_reset_changes part of step ready
== 2017-01-04 15:11:28,846 easyblock.py:2274 INFO Running method handle_iterate_opts part of step ready
== 2017-01-04 15:11:28,846 easyblock.py:2263 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 15:11:28,846 build_log.py:216 INFO unpacking...
== 2017-01-04 15:11:28,846 easyblock.py:2271 INFO Starting source step
== 2017-01-04 15:11:28,846 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:28,846 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:28,847 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:28,847 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:28,847 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:28,847 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:28,847 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:28,847 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:28,847 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:28,847 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:28,848 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:28,848 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:28,848 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:28,848 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:28,848 easyblock.py:2274 INFO Running method checksum_step part of step source
== 2017-01-04 15:11:28,848 easyblock.py:1529 INFO Checksum verification for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz using None passed.
== 2017-01-04 15:11:28,848 easyblock.py:2274 INFO Running method extract_step part of step source
== 2017-01-04 15:11:28,848 easyblock.py:1536 INFO Unpacking source binutils-2.27.tar.gz
== 2017-01-04 15:11:28,849 filetools.py:995 DEBUG Not creating existing path /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0
== 2017-01-04 15:11:28,849 filetools.py:201 DEBUG Unpacking /user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz in directory /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0.
== 2017-01-04 15:11:28,849 run.py:137 DEBUG run_cmd: running cmd tar xzf /user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz (in /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0)
== 2017-01-04 15:11:30,213 run.py:433 DEBUG cmd "tar xzf /user/data/gent/vsc400/vsc40023/EasyBuild/sources/b/binutils/binutils-2.27.tar.gz" exited with exitcode 0 and output:
== 2017-01-04 15:11:30,213 run.py:477 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2017-01-04 15:11:30,214 filetools.py:595 DEBUG Last dir list ['Makefile.def', 'COPYING3.LIB', 'intl', 'COPYING.LIB', 'libiberty', 'config.sub', 'opcodes', 'include', 'mkdep', 'ltsugar.m4', 'MAINTAINERS', 'makefile.vms', 'README', 'elfcpp', 'Makefile.tpl', 'move-if-change', 'lt~obsolete.m4', 'ltgcc.m4', 'bfd', 'setup.com', 'depcomp', 'config', 'ltversion.m4', 'ld', 'configure.ac', 'configure', 'cpu', 'README-maintainer-mode', 'zlib', 'COPYING', 'ChangeLog', 'config.guess', 'texinfo', 'ylwrap', 'etc', 'config-ml.in', 'gas', 'install-sh', 'gold', 'gprof', 'ltmain.sh', 'libtool.m4', 'md5.sum', 'ltoptions.m4', 'missing', 'src-release.sh', 'config.rpath', 'compile', 'mkinstalldirs', 'Makefile.in', 'symlink-tree', 'COPYING3', 'binutils']
== 2017-01-04 15:11:30,214 filetools.py:596 DEBUG Possible new dir /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0/binutils-2.27 found
== 2017-01-04 15:11:30,214 easyblock.py:2263 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 15:11:30,214 build_log.py:216 INFO patching...
== 2017-01-04 15:11:30,214 easyblock.py:2271 INFO Starting patch step
== 2017-01-04 15:11:30,215 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:30,215 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:30,215 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:30,215 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:30,215 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:30,215 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:30,215 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:30,215 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:30,216 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:30,216 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:30,216 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:30,216 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:30,216 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:30,216 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:30,216 easyblock.py:2274 INFO Running method patch_step part of step patch
== 2017-01-04 15:11:30,216 easyblock.py:2263 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 15:11:30,216 build_log.py:216 INFO preparing...
== 2017-01-04 15:11:30,217 easyblock.py:2271 INFO Starting prepare step
== 2017-01-04 15:11:30,217 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:30,217 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:30,217 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:30,217 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:30,217 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:30,217 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:30,217 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:30,218 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x13274d0>
== 2017-01-04 15:11:30,218 templates.py:175 DEBUG version found in easyconfig is 2.27
== 2017-01-04 15:11:30,218 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 15:11:30,218 templates.py:219 DEBUG name: name, config: binutils
== 2017-01-04 15:11:30,218 templates.py:219 DEBUG name: version, config: 2.27
== 2017-01-04 15:11:30,218 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 15:11:30,218 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 15:11:30,218 easyblock.py:2274 INFO Running method prepare_step part of step prepare
== 2017-01-04 15:11:30,219 modules.py:535 DEBUG Found cached result for 'module show GCCcore/6.3.0' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'GCCcore/6.3.0')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
----------------------------------------------------------------------------
/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/GCCcore/6.3.0.lua:
----------------------------------------------------------------------------
help([[The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/]])
whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada,
as well as libraries for these languages (libstdc++, libgcj,...). - Homepage: http://gcc.gnu.org/")
conflict("GCCcore")
prepend_path("CPATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/include")
prepend_path("LD_LIBRARY_PATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib")
prepend_path("LD_LIBRARY_PATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64")
prepend_path("LD_LIBRARY_PATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0")
prepend_path("LIBRARY_PATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib")
prepend_path("LIBRARY_PATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64")
prepend_path("MANPATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/share/man")
prepend_path("PATH","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/bin")
setenv("EBROOTGCCCORE","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0")
setenv("EBVERSIONGCCCORE","6.3.0")
setenv("EBDEVELGCCCORE","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/easybuild/GCCcore-6.3.0-easybuild-devel")
== 2017-01-04 15:11:30,219 toolchain.py:561 DEBUG Loading toolchain module and dependencies...
== 2017-01-04 15:11:30,219 toolchain.py:494 DEBUG Loading module for toolchain: GCCcore/6.3.0
== 2017-01-04 15:11:30,219 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 15:11:30,219 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2017-01-04 15:11:30,219 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2017-01-04 15:11:30,220 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/6.3.0' from /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0/binutils-2.27
== 2017-01-04 15:11:30,356 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/6.3.0': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["CPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/include";
os.environ["EBDEVELGCCCORE"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/easybuild/GCCcore-6.3.0-easybuild-devel";
os.environ["EBROOTGCCCORE"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0";
os.environ["EBVERSIONGCCCORE"] = "6.3.0";
os.environ["LD_LIBRARY_PATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib";
os.environ["LIBRARY_PATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["LOADEDMODULES"] = "cluster/golett:GCCcore/6.3.0";
os.environ["MANPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/share/man::";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["PATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/bin:/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin:/user/home/gent/vsc400/vsc40023/bin:/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin:/user/home/gent/vsc400/vsc40023/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin:/user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/bin:/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin:/user/home/gent/vsc400/vsc40023/scratch/easybuild_easy_installed/bin";
os.environ["_LMFILES_"] = "/etc/modulefiles/vsc/cluster/golett.lua:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/GCCcore/6.3.0.lua";
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJhY3RpdmVTaXplIl09MixiYXNlTXBhdGhBPXsiL3VzZXIvaG9tZS9nZW50L3ZzYzQwMC92c2M0MDAyMy9lYl9waGFucHlzY3JhdGNoL0NPNy9oYXN3ZWxsLWliL21vZHVsZXMvYWxsIiwiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0sWyJjX3JlYnVpbGRUaW1lIl09ODY0MDAsWyJjX3Nob3J0VGltZSJdPWZhbHNlLGZhbWlseT17WyJjbHVzdGVyIl09ImNsdXN0ZXIiLH0saW5hY3RpdmU9e30sbVQ9e0dDQ2NvcmU9e1siRk4iXT0iL3VzZXIvaG9tZS9nZW50L3ZzYzQwMC92c2M0MDAyMy9lYl9waGFucHlzY3JhdGNoL0NPNy9oYXN3ZWxsLWliL21vZHVsZXMvYWxsL0dDQ2NvcmUvNi4zLjAubHVhIixbImRlZmF1bHQiXT0wLFsiZnVsbE5hbWUiXT0iR0ND";
os.environ["_ModuleTable002_"] = "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";
os.environ["_ModuleTable003_"] = "c3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "3";
; stderr:
== 2017-01-04 15:11:30,356 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/6.3.0' ran fine
== 2017-01-04 15:11:30,357 modules.py:682 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib'] to ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib']
== 2017-01-04 15:11:30,357 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib (previous value: '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib')
== 2017-01-04 15:11:30,357 modules.py:682 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2017-01-04 15:11:30,357 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2017-01-04 15:11:30,357 toolchain.py:523 DEBUG Loading modules for dependencies: ['flex/2.6.3-GCCcore-6.3.0', 'Bison/3.0.4-GCCcore-6.3.0', 'zlib/1.2.10-GCCcore-6.3.0', 'binutils/2.27']
== 2017-01-04 15:11:30,357 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 15:11:30,357 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib/gcc/x86_64-pc-linux-gnu/6.3.0:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib64:/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/GCCcore/6.3.0/lib' to '' in environment for module command
== 2017-01-04 15:11:30,358 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2017-01-04 15:11:30,358 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python load flex/2.6.3-GCCcore-6.3.0' from /tmp/vsc40023/easybuild_build/binutils/2.27/GCCcore-6.3.0/binutils-2.27
== 2017-01-04 15:11:32,605 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python load flex/2.6.3-GCCcore-6.3.0': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
false
; stderr: Lmod has detected the following error: The following module(s) are unknown:
"flex/2.6.3-GCCcore-6.3.0"
Please check the spelling or version number. Also try "module spider ..."
If you don't understand the warning or error, contact the helpdesk at hpc@ugent.be
== 2017-01-04 15:11:32,606 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load flex/2.6.3-GCCcore-6.3.0' ran fine
== 2017-01-04 15:11:32,611 build_log.py:147 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Changing environment as dictated by module failed: name 'false' is not defined (stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
false
, stderr: Lmod has detected the following error: The following module(s) are unknown:
"flex/2.6.3-GCCcore-6.3.0"
Please check the spelling or version number. Also try "module spider ..."
If you don't understand the warning or error, contact the helpdesk at hpc@ugent.be
) (at easybuild/tools/modules.py:674 in run_module)
== 2017-01-04 15:11:32,611 easyblock.py:2503 WARNING build failed (first 300 chars): Changing environment as dictated by module failed: name 'false' is not defined (stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscr
== 2017-01-04 15:11:32,611 easyblock.py:276 INFO Closing log for application name binutils version 2.27
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