avram/overlay.xul

## overlay.xul
<?xml version="1.0"?>
<?xml-stylesheet href="chrome://zotfile/skin/overlay.css" type="text/css"?>
<!DOCTYPE window SYSTEM "chrome://zotfile/locale/zotfile.dtd">

<overlay id="zotfile-overlay"
	xmlns="http://www.mozilla.org/keymaster/gatekeeper/there.is.only.xul">

	<stringbundleset id="stringbundleset">
		<stringbundle id="zotfile-strings"
			      src="chrome://zotfile/locale/zotfile.properties"/>
	</stringbundleset>

	<!-- ZotFile context menus -->
	<popup id="zotero-itemmenu">
		<menuseparator />
		<menuitem label="Attach New File" tooltiptext="Move and attach last file in user defined folder to selected Zotero item" oncommand="Zotero.ZotFile.AttachNewFile()"/>
		<menuitem label="Attach Converted File" tooltiptext="Attach a converted version of the last file in a user-defined folder to this item" oncommand="Zotero.ZotFile.AttachConvertedFile()"/>
		<menuitem label="Rename Existing Attachments" tooltiptext="Move and rename existing Attachments from selected Zotero item" oncommand="Zotero.ZotFile.RenameAttachments()"/>
	</popup>

	<!-- Include the main extension logic -->
	<script src="chrome://zotero/content/include.js"/>
	<script src="chrome://zotfile/content/include.js"/>
</overlay>

## process.bat
@echo off
REM For processing captured images from JPG to PBM to DjVu.
REM Takes one argument-- the input without the extension
REM Exits with value of 200 if all is well.

:: Set library executables
set magick="c:\Documents and Settings\Avram\My Documents\ImageMagick-6.6.6-3\convert.exe"
set djvu="c:\Program Files\minidjvu\minidjvu.exe"

IF NOT EXIST %1%.JPG (
echo Input file not found: %1.JPG
pause
GOTO :EOF
) else (
echo Processing %1.JPG
)

:CONVERSIONS
:: First use ImageMagick to make a PBM
echo Converting to PBM
%magick% %1.JPG %1.pbm
IF NOT EXIST %1.pbm (
echo Converted PBM not found.
pause
GOTO :EOF
)
:: Now use the DjVu utility to make a DjVu
echo Converting to DjVu
:: Now convert it to DjVu
%djvu% %1.pbm %1.djvu
IF NOT EXIST %1.djvu (
echo Converted DjVu not found.
pause
GOTO :EOF
) ELSE (
:: Delete the PBM, now that we have the DjVu
del %1.pbm
EXIT 200
)

## zotfile.js
Zotero.ZotFile = {


	prefs: null,
	fileMap: {}, //maps collections to their file objects

	mergeObserver: {
		observe: function(a, b, c){
			//this should get called when the dynamic overlay loading in createUI is complete.
			//we adjust UI stuff according to preferences here.
			document.getElementById("zotfile-usetags").setAttribute("checked",
				 Zotero.ZotFile.prefs.getBoolPref("useTags").toString());
		}
 	},

	createUI: function() {
		// Coment from lytero "I can't reference the node where I want to add stuff directly in an overlay because it has no ID,
		// so I'll create the minimum here and dynamically load the overlay."
//		var lmenu = document.createElement("toolbarbutton");
//		lmenu.setAttribute("id", "overlay");
//		var parentn = document.getElementById("zotero-collections-pane").firstChild.firstChild;
//		parentn = document.getElementById("zotero-items-pane").firstChild;
//		var zfb = document.createElement("toolbarbutton");
//		zfb.setAttribute("id", "zf-button");
//		siblingn = document.getElementById("zotero-tb-advanced-search");
		// add the button to start action
//		parentn.insertBefore(zfb, siblingn);
//		parentn.insertBefore(document.createElement("toolbarseparator"),siblingn);

		//load the overlay
		document.loadOverlay("chrome://zotfile/content/overlay.xul", this.mergeObserver);

	},

	getpara: function (para) {
		// Initially this function
		var filetypes=/pdf|doc|txt|rtf|jpg|JPG/;
		if(para=="filetypes") return(filetypes);
	},


	init: function () {
		//set up preferences
		this.prefs = Components.classes["@mozilla.org/preferences-service;1"].
		            getService(Components.interfaces.nsIPrefService);
		this.prefs = this.prefs.getBranch("extensions.zotfile.");

//		this.wm = Components.classes["@mozilla.org/appshell/window-mediator;1"].
//				getService(Components.interfaces.nsIWindowMediator);

		this.createUI()
	},

	infoWindow: function(main, message, time){

		  var pw = new (Zotero.ProgressWindow);
		  pw.changeHeadline(main);
		  if (main=="error") pw.changeHeadline(Zotero.getString("general.errorHasOccurred"));  pw.addDescription(message);
		  pw.show();
		  pw.startCloseTimer(time);

	},

	// Function replaces wildcard both for filename and subfolder definition
	replaceWildcard: function(zitem, rule){
	  // get item type
	  var item_type =  zitem.getType();

	  // get title of selected item
	  var title = zitem.getField('title');

	  // truncnate title after : . and ?
	  var truncate = title.search(/:|\.|\?/);
	  if(truncate!=-1) var title = title.substr(0,truncate);
	  var title_length =  title.length;
	  if (title_length>this.prefs.getIntPref("max_titlelength")) var title = title.substr(0,this.prefs.getIntPref("max_titlelength"));

	  // get journal
	  var journal = zitem.getField('publicationTitle');

	  // get journal abbreviation
	  var journal_abb = zitem.getField('journalAbbreviation');

	  // get publisher
	  var publisher = zitem.getField('publisher');

	  // get volume and issue
	  var volume = zitem.getField('volume');
	  var issue = zitem.getField('issue');

	  // get patent stuff
	  // var inventor
	  var assignee = zitem.getField('assignee');
	  var patentnr = zitem.getField('patentNumber');
	  var priority_date = patentnr.substr(2,4);

	  // get creator and create authors string
	  var creatorType=1;
	  if (zitem.getType()==19) var creatorType=14;
	  var add_etal=this.prefs.getBoolPref("add_etal");
	  var author = "";
	  var creators = zitem.getCreators();
	  var numauthors = creators.length;
	  for (var i=0; i < creators.length; i++) {
	    if(creators[i].creatorTypeID!=creatorType) var numauthors=numauthors-1;
	  }
	  if (numauthors<=this.prefs.getIntPref("max_authors")) var add_etal=0;
	  if (numauthors>this.prefs.getIntPref("max_authors")) var numauthors = 1;
	  var j=0;
	  for (var i=0; i < creators.length; i++) {
	    if (j<numauthors & creators[i].creatorTypeID==creatorType) {
	      if (author!="") var author = author + "_" + creators[i].ref.lastName;
	      if (author=="") var author = creators[i].ref.lastName;
	      var j=j+1;
	    }
	  }
	  if (add_etal==1) var author = author + this.prefs.getCharPref("etal");

	  // date
	  var year = zitem.getField('date', true).substr(0,4);
	  if(item_type==19)  var year_issue = zitem.getField('issueDate', true).substr(0,4);

	  // create output from rule
	  var field=0;
	  var output='';
	  for (var i=0; i<rule.length; i++) {
	    var char=rule.charAt(i);
	    switch (char) {
	      case '%':
		 	var field=1;
		  break;

	      case 'a':
	        if (field==1) var output = output + author;
		 	var field=0;
	      break;

	      case 't':
	         if (field==1) var output = output + title;
		 	 var field=0;
	      break;

	      case 'y':
	         if (field==1) var output = output + year;
		 	 var field=0;
		  break;

	      case 'j':
	         if (field==1) var output = output + journal;
		     var field=0;
	      break;

	      case 'p':
	         if (field==1) var output = output + publisher;
		 	 var field=0;
	      break;

	      case 'n':
	         if (field==1) var output = output + patentnr;
		 	 var field=0;
	      break;

	      case 'i':
	         if (field==1) var output = output + assignee;
		 	 var field=0;
	      break;

	      case 'u':
	         if (field==1) var output = output + year_issue;
		 	 var field=0;
	      break;

	      case 'w':
	         if (field==1) {
	            var output = output + journal;
	            if(journal=="") var output = output + publisher;
	         }
		     var field=0;
	      break;

	      case 's':
	         if (field==1) var output = output + journal_abb;
		 	 var field=0;
	      break;

	      case 'v':
	         if (field==1) var output = output + volume;
		 	 var field=0;
	      break;

	      case 'e':
	         if (field==1) var output = output + issue;
		 	 var field=0;
	      break;

	      default: var output = output + char;
	    }
	  }
	return(output);

	},

	getFolder: function(zitem, dest_dir, rule){

		var subfolder="";
		if( this.prefs.getBoolPref("subfolder")) {
			subfolder=this.replaceWildcard(zitem, rule);
		}

//		var journal = zitem.getField('publicationTitle');
		var folder = dest_dir + subfolder;
		return(folder);
	},

//	pref("extensions.zotfile.subfolder", false);
//	pref("extensions.zotfile.subfolderFormat", "%j/%y");

	getFiletype: function(fname){
		 var temp = new Array();
		 temp = fname.split('.');
		 return(temp[temp.length-1].toLowerCase());
	},

	lastFileInDir: function(dir_path, rule){
 		 // create a nslFile Object for the dir
		 try {
		  var dir = Components.classes["@mozilla.org/file/local;1"].
		  createInstance(Components.interfaces.nsILocalFile);
		  dir.initWithPath(dir_path);
		  var lastfile_date=0;
		  var lastfile_path="";
		  var success=0;

		  // go through all the files in the dir
		  var i=0;
		  var files = dir.directoryEntries;
		  while (files.hasMoreElements()) {
		    // get one after the other file
		  var file = files.getNext();
		  file.QueryInterface(Components.interfaces.nsIFile);
		    // only look at files which are neither folders nor hidden
		    if(!file.isDirectory() & !file.isHidden()) {
		     // now we want to check which filetype we are looking at
		     // we only want to consider pdfs, docs, ...
		     var filetype=this.getFiletype(file.leafName);
			 // for whatever reason, rule is not really passed to the function so I just call getpara directly in the line above...
		     var type=filetype.search(this.getpara("filetypes"));
		      if (type>=0) {
		        var modtime = file.lastModifiedTime;
		        var i=i+1;
		        // finally, we set lastfile to the file with the most recent modification
		        if (modtime>lastfile_date){
		          var lastfile_date=modtime;
		          lastfile=file;
		          var success=1;
		       }
		      }
		    }
		  }
		  if (success==1) return(lastfile);
		  else return(-1);

		 } catch (e) {
		    Components.utils.reportError(e);
		    return (-2);
		 }

	},

	moveFile: function(file, destination, filename){
	    // create a nslFile Object of the destination folder
	    var dir = Components.classes["@mozilla.org/file/local;1"].
	    createInstance(Components.interfaces.nsILocalFile);
	    dir.initWithPath(destination);

	    // move file to new location
	    file.moveTo(dir, filename);
		return(file.path);
	},

	convertFile: function(file, destination, filename) {
	    // create a nslFile Object of the destination folder
	    var dir = Components.classes["@mozilla.org/file/local;1"].
	    createInstance(Components.interfaces.nsILocalFile);
	    dir.initWithPath(destination);

	    // move file to new location
	    file.moveTo(dir, filename);
		var status = this.convertFileFromPath(file.path);
		if(status == 200) {
			var djpath = file.path.replace(/\.\w+$/, ".djvu");
			this.infoWindow("Zotfile Report","File \'" + file.path + "\' was successfully converted to DejaVu format.",8000);
			return(djpath);
		} else {
			this.infoWindow("Zotfile Report","File \'" + file.path + "\' was not converted to DejaVu format. It will be added without being changed"+"Status: "+status,8000);
			return(file.path);
		}
	},

	convertFileFromPath: function(filePath) {
		// create an nsILocalFile for the executable
		var processor = Components.classes["@mozilla.org/file/local;1"]
							 .createInstance(Components.interfaces.nsILocalFile);
		processor.initWithPath(this.prefs.getCharPref("converterPath"));
		//processor.initWithPath("c:\\Documents and Settings\\Avram\\My Documents\\Academic Large Documents\\Tethered Shooting\\process.bat");
		if (!processor.exists()) {
			this.infoWindow("Zotfile Error","Conversion script not found at path "+this.prefs.getCharPref("converterPath"),8000);
			return 0;
		}

		// create an nsIProcess
		var process = Components.classes["@mozilla.org/process/util;1"]
								.createInstance(Components.interfaces.nsIProcess);
		process.init(processor);

		// Run the process.
		// If first param is true, calling thread will be blocked until
		// called process terminates.
		// Second and third params are used to pass command-line arguments
		// to the process.
		var args = [filePath.match(/(.*)\.\w+$/)[1]];
		process.run(true, args, args.length);
		return(process.exitValue);
	},

	getFilename: function(item){
	    // create the new filename from the selected item
		var item_type =  item.getType();
		var rename_rule=this.prefs.getCharPref("renameFormat");
		if(item_type==19) var rename_rule=this.prefs.getCharPref("renameFormat_patent");
		if (!this.prefs.getBoolPref("useZoteroToRename")) {

		  var filename=this.replaceWildcard(item, rename_rule);
		 //var filename =  author + "_" + year + "_" + title;

		  // Strip potentially invalid characters
		  // (code line adopted from Zotero)
		  var filename = filename.replace(/[\/\\\?\*:|"<>\.]/g, '');

		  // replace blanks with '_' if option selected
		  if (this.prefs.getBoolPref("replace_blanks"))  var filename = filename.replace(/ /g, '_');

		}
		if (this.prefs.getBoolPref("useZoteroToRename")) filename=Zotero.Attachments.getFileBaseNameFromItem(item.itemID);
		return(filename);
	},

	// Attach Converted Copy of File from Download Folder
	// This code is just copied from the subsequent function
	AttachConvertedFile: function(){
		var items = ZoteroPane.getSelectedItems();
		var item = items[0];

		//check whether it really is an bibliographic item (no Attachment, note or collection)
		if (!item.isAttachment() & !item.isCollection() & !item.isNote()) {

		  // create the new filename from the selected item
		  filename=this.getFilename(item);

		  // get the last modified file from a directory
		  file=this.lastFileInDir(this.prefs.getCharPref("source_dir"), this.getpara("filetypes"));
		  if(file!=-1 & file!=-2 ) {
		    var file_oldpath=file.leafName;

		    // complete filename with extension
		    var filetype=this.getFiletype(file.leafName);
		    var filename = filename + "." + filetype;

			// confirmation from user
			var confirmed=1;
			if (this.prefs.getBoolPref("confirmation")) var confirmed=confirm("Do you want to rename and link the file \'" + file_oldpath + "\' to the currently selected Zotero item?");
			if(confirmed){

				// set location for renamed file
				if (!this.prefs.getBoolPref("import")) var location=this.getFolder(item,this.prefs.getCharPref("dest_dir"),this.prefs.getCharPref("subfolderFormat"));
				if ( this.prefs.getBoolPref("import")) var location=this.prefs.getCharPref("dest_dir");

				// convert file
		    	var file_path=this.convertFile(file, location, filename);

		    	// recreate the file nslFile Object
			    // (for some reason the Attachment is linked to the wrong location without recreation)
			    var file = Components.classes["@mozilla.org/file/local;1"].
			    createInstance(Components.interfaces.nsILocalFile);
			    file.initWithPath(file_path);

				// Linked Attachments
				if (!this.prefs.getBoolPref("import")) Zotero.Attachments.linkFromFile(file, item.itemID,item.libraryID);

			    // Imported Attachments - Attach last file to selected Zotero item
				if(this.prefs.getBoolPref("import")) {
					// Attach last file to selected Zotero item
					Zotero.Attachments.importFromFile(file, item.itemID,item.libraryID);

					//Delete the old file that is not longer needed
					file.remove(false);
				}

				// Show message
			    this.infoWindow("Zotfile Report","File \'" + file_oldpath + "\' changed to \'" + file.leafName + "\' and added as an attachment.",8000);
			}
		  }
		  else this.infoWindow("Zotfile Error","Unable to find file in " + this.prefs.getCharPref("source_dir"),8000);
		}
		else this.infoWindow("Zotfile Error","Selected item is either an Attachment, a note, or a collection.",8000);
	},

	// Attach New File from Download Folder
	AttachNewFile: function(){
		var items = ZoteroPane.getSelectedItems();
		var item = items[0];

		//check whether it really is an bibliographic item (no Attachment, note or collection)
		if (!item.isAttachment() & !item.isCollection() & !item.isNote()) {

		  // create the new filename from the selected item
		  filename=this.getFilename(item);

		  // get the last modified file from a directory
		  file=this.lastFileInDir(this.prefs.getCharPref("source_dir"), this.getpara("filetypes"));
		  if(file!=-1 & file!=-2 ) {
		    var file_oldpath=file.leafName;

		    // complete filename with extension
		    var filetype=this.getFiletype(file.leafName);
		    var filename = filename + "." + filetype;

			// confirmation from user
			var confirmed=1;
			if (this.prefs.getBoolPref("confirmation")) var confirmed=confirm("Do you want to rename and link the file \'" + file_oldpath + "\' to the currently selected Zotero item?");
			if(confirmed){

				// set location for renamed file
				if (!this.prefs.getBoolPref("import")) var location=this.getFolder(item,this.prefs.getCharPref("dest_dir"),this.prefs.getCharPref("subfolderFormat"));
				if ( this.prefs.getBoolPref("import")) var location=this.prefs.getCharPref("dest_dir");

				// move file
		    	var file_path=this.moveFile(file, location, filename);

		    	// recreate the file nslFile Object
			    // (for some reason the Attachment is linked to the wrong location without recreation)
			    var file = Components.classes["@mozilla.org/file/local;1"].
			    createInstance(Components.interfaces.nsILocalFile);
			    file.initWithPath(file_path);

				// Linked Attachments
				if (!this.prefs.getBoolPref("import")) Zotero.Attachments.linkFromFile(file, item.itemID,item.libraryID);

			    // Imported Attachments - Attach last file to selected Zotero item
				if(this.prefs.getBoolPref("import")) {
					// Attach last file to selected Zotero item
					Zotero.Attachments.importFromFile(file, item.itemID,item.libraryID);

					//Delete the old file that is not longer needed
					file.remove(false);
				}

				// Show message
			    this.infoWindow("Zotfile Report","File \'" + file_oldpath + "\' changed to \'" + file.leafName + "\' and added as an attachment.",8000);
			}
		  }
		  else this.infoWindow("Zotfile Error","Unable to find file in " + this.prefs.getCharPref("source_dir"),8000);
		}
		else this.infoWindow("Zotfile Error","Selected item is either an Attachment, a note, or a collection.",8000);
	},

	// Rename & Move Existing Attachments
	RenameAttachments: function(){
		var items = ZoteroPane.getSelectedItems();

		var confirmed=1;
		if (items.length>=this.prefs.getIntPref("confirmation_batch")) var confirmed=confirm("You are about to rename and move the attachments of " + items.length + " items. Are you sure that you want to proceed? Your call!");
		if(confirmed) for (var i=0; i < items.length; i++) {
			var item = items[i];
			var itemID = item.id;

			// Zotero.Item.isImportedAttachment()
			if(item.isRegularItem()) {
				// get all attachments
				var attachments = item.getAttachments();

				// go through all attachments
//				for (var j=0; j < attachments.length; j++) {
				var j=0;
				if (attachments.length==1) {

					// get current attachments
					var attID = item.getAttachments()[j];
					var att = Zotero.Items.get(attID);

					// get object of attached file
					var infile = att.getFile();

					// create file name using ZotFile rules
					var filename = this.getFilename(item) + "." + this.getFiletype(infile.leafName);

					// rename file associated with attachment
					att.renameAttachmentFile(filename);

					// change title of attachment item
					att.setField('title', filename);
					att.save();

					// (a) LINKED ATTACHMENT TO IMPORTED ATTACHMENT
					if (!att.isImportedAttachment()	& this.prefs.getBoolPref("import")) {

						// get object of attached file
						var infile = att.getFile();

						// Attach file to selected Zotero item
                      	Zotero.Attachments.importFromFile(infile, itemID,item.libraryID);

						// remove file from hard-drive
                        infile.remove(false);

						// erase old attachment
						att.erase();

						this.infoWindow("Zotfile Report","Imported Attachment \'" + filename + "\'.",8000);
					}
					// (b) IMPORTED ATTACHMENT TO LINKED ATTACHMENT
//					if (att.isImportedAttachment()	& !this.prefs.getBoolPref("import")) {
					if (!this.prefs.getBoolPref("import")) {
						// get object of attached file
						var infile = att.getFile();

						// move pdf file
						var location=this.getFolder(item,this.prefs.getCharPref("dest_dir"),this.prefs.getCharPref("subfolderFormat"));
						var outfile_path=this.moveFile(infile,location , filename);

				    	// recreate the outfile nslFile Object
					    // (for some reason the Attachment is linked to the wrong location without recreation)
					    var outfile = Components.classes["@mozilla.org/file/local;1"].
					    createInstance(Components.interfaces.nsILocalFile);
					    outfile.initWithPath(outfile_path);

						// create linked attachment
						Zotero.Attachments.linkFromFile(outfile, itemID,item.libraryID);

						// erase old attachment
						att.erase();

						this.infoWindow("Zotfile Report","Linked Attachment \'" + filename + "\'.",8000);

					}
				}

			}
		}
	}
};


// Initialize the utility
//window.addEventListener('load', function(e) { Zotero.ZotFile.init(); }, false);


//check whether it really is an bibliographic item (no Attachment, note or collection)
//if (!item.isAttachment() & !item.isCollection() & !item.isNote()) {


//if (item.isAttachment()) {
	// consider that you there are multiple senarios
	// a) attachment is linked, and the goal is to attach it
	// b) attachment is attached, and the goal is to link it
	// make sure that nothing bad happens if the attachment is already named correctly

//}
//if (item.isCollection() | item.isNote()) this.infoWindow("Zotfile Error","Selected item is either a note, or a collection.",8000);


## zotfile.js (prefs)
pref("extensions.zotfile.source_dir","~/Downloads");
pref("extensions.zotfile.dest_dir", "~/Documents/Literatur");
pref("extensions.zotfile.useZoteroToRename", false);
pref("extensions.zotfile.renameFormat", "%a_%y_%t");
pref("extensions.zotfile.renameFormat_patent", "%a_%y_%t");
pref("extensions.zotfile.max_titlelength", 80);
pref("extensions.zotfile.max_authors", 2);
pref("extensions.zotfile.add_etal", true);
pref("extensions.zotfile.etal", " et al");
pref("extensions.zotfile.confirmation", true);
pref("extensions.zotfile.confirmation_batch", 2);
pref("extensions.zotfile.import", false);
pref("extensions.zotfile.replace_blanks", false);
pref("extensions.zotfile.subfolder", false);
pref("extensions.zotfile.subfolderFormat", "/%w/%y");
pref("extensions.zotfile.converterPath", "c:\\Documents and Settings\\Avram\\My Documents\\Academic Large Documents\\Tethered Shooting\\process.bat");
	<?xml version="1.0"?>
	<?xml-stylesheet href="chrome://zotfile/skin/overlay.css" type="text/css"?>
	<!DOCTYPE window SYSTEM "chrome://zotfile/locale/zotfile.dtd">

	<overlay id="zotfile-overlay"
	xmlns="http://www.mozilla.org/keymaster/gatekeeper/there.is.only.xul">

	<stringbundleset id="stringbundleset">
	<stringbundle id="zotfile-strings"
	src="chrome://zotfile/locale/zotfile.properties"/>
	</stringbundleset>

	<!-- ZotFile context menus -->
	<popup id="zotero-itemmenu">
	<menuseparator />
	<menuitem label="Attach New File" tooltiptext="Move and attach last file in user defined folder to selected Zotero item" oncommand="Zotero.ZotFile.AttachNewFile()"/>
	<menuitem label="Attach Converted File" tooltiptext="Attach a converted version of the last file in a user-defined folder to this item" oncommand="Zotero.ZotFile.AttachConvertedFile()"/>
	<menuitem label="Rename Existing Attachments" tooltiptext="Move and rename existing Attachments from selected Zotero item" oncommand="Zotero.ZotFile.RenameAttachments()"/>
	</popup>

	<!-- Include the main extension logic -->
	<script src="chrome://zotero/content/include.js"/>
	<script src="chrome://zotfile/content/include.js"/>
	</overlay>
	@echo off
	REM For processing captured images from JPG to PBM to DjVu.
	REM Takes one argument-- the input without the extension
	REM Exits with value of 200 if all is well.

	:: Set library executables
	set magick="c:\Documents and Settings\Avram\My Documents\ImageMagick-6.6.6-3\convert.exe"
	set djvu="c:\Program Files\minidjvu\minidjvu.exe"

	IF NOT EXIST %1%.JPG (
	echo Input file not found: %1.JPG
	pause
	GOTO :EOF
	) else (
	echo Processing %1.JPG
	)

	:CONVERSIONS
	:: First use ImageMagick to make a PBM
	echo Converting to PBM
	%magick% %1.JPG %1.pbm
	IF NOT EXIST %1.pbm (
	echo Converted PBM not found.
	pause
	GOTO :EOF
	)
	:: Now use the DjVu utility to make a DjVu
	echo Converting to DjVu
	:: Now convert it to DjVu
	%djvu% %1.pbm %1.djvu
	IF NOT EXIST %1.djvu (
	echo Converted DjVu not found.
	pause
	GOTO :EOF
	) ELSE (
	:: Delete the PBM, now that we have the DjVu
	del %1.pbm
	EXIT 200
	)
	Zotero.ZotFile = {


	prefs: null,
	fileMap: {}, //maps collections to their file objects

	mergeObserver: {
	observe: function(a, b, c){
	//this should get called when the dynamic overlay loading in createUI is complete.
	//we adjust UI stuff according to preferences here.
	document.getElementById("zotfile-usetags").setAttribute("checked",
	Zotero.ZotFile.prefs.getBoolPref("useTags").toString());
	}
	},

	createUI: function() {
	// Coment from lytero "I can't reference the node where I want to add stuff directly in an overlay because it has no ID,
	// so I'll create the minimum here and dynamically load the overlay."
	// var lmenu = document.createElement("toolbarbutton");
	// lmenu.setAttribute("id", "overlay");
	// var parentn = document.getElementById("zotero-collections-pane").firstChild.firstChild;
	// parentn = document.getElementById("zotero-items-pane").firstChild;
	// var zfb = document.createElement("toolbarbutton");
	// zfb.setAttribute("id", "zf-button");
	// siblingn = document.getElementById("zotero-tb-advanced-search");
	// add the button to start action
	// parentn.insertBefore(zfb, siblingn);
	// parentn.insertBefore(document.createElement("toolbarseparator"),siblingn);

	//load the overlay
	document.loadOverlay("chrome://zotfile/content/overlay.xul", this.mergeObserver);

	},

	getpara: function (para) {
	// Initially this function
	var filetypes=/pdf\|doc\|txt\|rtf\|jpg\|JPG/;
	if(para=="filetypes") return(filetypes);
	},


	init: function () {
	//set up preferences
	this.prefs = Components.classes["@mozilla.org/preferences-service;1"].
	getService(Components.interfaces.nsIPrefService);
	this.prefs = this.prefs.getBranch("extensions.zotfile.");

	// this.wm = Components.classes["@mozilla.org/appshell/window-mediator;1"].
	// getService(Components.interfaces.nsIWindowMediator);

	this.createUI()
	},

	infoWindow: function(main, message, time){

	var pw = new (Zotero.ProgressWindow);
	pw.changeHeadline(main);
	if (main=="error") pw.changeHeadline(Zotero.getString("general.errorHasOccurred")); pw.addDescription(message);
	pw.show();
	pw.startCloseTimer(time);

	},

	// Function replaces wildcard both for filename and subfolder definition
	replaceWildcard: function(zitem, rule){
	// get item type
	var item_type = zitem.getType();

	// get title of selected item
	var title = zitem.getField('title');

	// truncnate title after : . and ?
	var truncate = title.search(/:\|\.\|\?/);
	if(truncate!=-1) var title = title.substr(0,truncate);
	var title_length = title.length;
	if (title_length>this.prefs.getIntPref("max_titlelength")) var title = title.substr(0,this.prefs.getIntPref("max_titlelength"));

	// get journal
	var journal = zitem.getField('publicationTitle');

	// get journal abbreviation
	var journal_abb = zitem.getField('journalAbbreviation');

	// get publisher
	var publisher = zitem.getField('publisher');

	// get volume and issue
	var volume = zitem.getField('volume');
	var issue = zitem.getField('issue');

	// get patent stuff
	// var inventor
	var assignee = zitem.getField('assignee');
	var patentnr = zitem.getField('patentNumber');
	var priority_date = patentnr.substr(2,4);

	// get creator and create authors string
	var creatorType=1;
	if (zitem.getType()==19) var creatorType=14;
	var add_etal=this.prefs.getBoolPref("add_etal");
	var author = "";
	var creators = zitem.getCreators();
	var numauthors = creators.length;
	for (var i=0; i < creators.length; i++) {
	if(creators[i].creatorTypeID!=creatorType) var numauthors=numauthors-1;
	}
	if (numauthors<=this.prefs.getIntPref("max_authors")) var add_etal=0;
	if (numauthors>this.prefs.getIntPref("max_authors")) var numauthors = 1;
	var j=0;
	for (var i=0; i < creators.length; i++) {
	if (j<numauthors & creators[i].creatorTypeID==creatorType) {
	if (author!="") var author = author + "_" + creators[i].ref.lastName;
	if (author=="") var author = creators[i].ref.lastName;
	var j=j+1;
	}
	}
	if (add_etal==1) var author = author + this.prefs.getCharPref("etal");

	// date
	var year = zitem.getField('date', true).substr(0,4);
	if(item_type==19) var year_issue = zitem.getField('issueDate', true).substr(0,4);

	// create output from rule
	var field=0;
	var output='';
	for (var i=0; i<rule.length; i++) {
	var char=rule.charAt(i);
	switch (char) {
	case '%':
	var field=1;
	break;

	case 'a':
	if (field==1) var output = output + author;
	var field=0;
	break;

	case 't':
	if (field==1) var output = output + title;
	var field=0;
	break;

	case 'y':
	if (field==1) var output = output + year;
	var field=0;
	break;

	case 'j':
	if (field==1) var output = output + journal;
	var field=0;
	break;

	case 'p':
	if (field==1) var output = output + publisher;
	var field=0;
	break;

	case 'n':
	if (field==1) var output = output + patentnr;
	var field=0;
	break;

	case 'i':
	if (field==1) var output = output + assignee;
	var field=0;
	break;

	case 'u':
	if (field==1) var output = output + year_issue;
	var field=0;
	break;

	case 'w':
	if (field==1) {
	var output = output + journal;
	if(journal=="") var output = output + publisher;
	}
	var field=0;
	break;

	case 's':
	if (field==1) var output = output + journal_abb;
	var field=0;
	break;

	case 'v':
	if (field==1) var output = output + volume;
	var field=0;
	break;

	case 'e':
	if (field==1) var output = output + issue;
	var field=0;
	break;

	default: var output = output + char;
	}
	}
	return(output);

	},

	getFolder: function(zitem, dest_dir, rule){

	var subfolder="";
	if( this.prefs.getBoolPref("subfolder")) {
	subfolder=this.replaceWildcard(zitem, rule);
	}

	// var journal = zitem.getField('publicationTitle');
	var folder = dest_dir + subfolder;
	return(folder);
	},

	// pref("extensions.zotfile.subfolder", false);
	// pref("extensions.zotfile.subfolderFormat", "%j/%y");

	getFiletype: function(fname){
	var temp = new Array();
	temp = fname.split('.');
	return(temp[temp.length-1].toLowerCase());
	},

	lastFileInDir: function(dir_path, rule){
	// create a nslFile Object for the dir
	try {
	var dir = Components.classes["@mozilla.org/file/local;1"].
	createInstance(Components.interfaces.nsILocalFile);
	dir.initWithPath(dir_path);
	var lastfile_date=0;
	var lastfile_path="";
	var success=0;

	// go through all the files in the dir
	var i=0;
	var files = dir.directoryEntries;
	while (files.hasMoreElements()) {
	// get one after the other file
	var file = files.getNext();
	file.QueryInterface(Components.interfaces.nsIFile);
	// only look at files which are neither folders nor hidden
	if(!file.isDirectory() & !file.isHidden()) {
	// now we want to check which filetype we are looking at
	// we only want to consider pdfs, docs, ...
	var filetype=this.getFiletype(file.leafName);
	// for whatever reason, rule is not really passed to the function so I just call getpara directly in the line above...
	var type=filetype.search(this.getpara("filetypes"));
	if (type>=0) {
	var modtime = file.lastModifiedTime;
	var i=i+1;
	// finally, we set lastfile to the file with the most recent modification
	if (modtime>lastfile_date){
	var lastfile_date=modtime;
	lastfile=file;
	var success=1;
	}
	}
	}
	}
	if (success==1) return(lastfile);
	else return(-1);

	} catch (e) {
	Components.utils.reportError(e);
	return (-2);
	}

	},

	moveFile: function(file, destination, filename){
	// create a nslFile Object of the destination folder
	var dir = Components.classes["@mozilla.org/file/local;1"].
	createInstance(Components.interfaces.nsILocalFile);
	dir.initWithPath(destination);

	// move file to new location
	file.moveTo(dir, filename);
	return(file.path);
	},

	convertFile: function(file, destination, filename) {
	// create a nslFile Object of the destination folder
	var dir = Components.classes["@mozilla.org/file/local;1"].
	createInstance(Components.interfaces.nsILocalFile);
	dir.initWithPath(destination);

	// move file to new location
	file.moveTo(dir, filename);
	var status = this.convertFileFromPath(file.path);
	if(status == 200) {
	var djpath = file.path.replace(/\.\w+$/, ".djvu");
	this.infoWindow("Zotfile Report","File \'" + file.path + "\' was successfully converted to DejaVu format.",8000);
	return(djpath);
	} else {
	this.infoWindow("Zotfile Report","File \'" + file.path + "\' was not converted to DejaVu format. It will be added without being changed"+"Status: "+status,8000);
	return(file.path);
	}
	},

	convertFileFromPath: function(filePath) {
	// create an nsILocalFile for the executable
	var processor = Components.classes["@mozilla.org/file/local;1"]
	.createInstance(Components.interfaces.nsILocalFile);
	processor.initWithPath(this.prefs.getCharPref("converterPath"));
	//processor.initWithPath("c:\\Documents and Settings\\Avram\\My Documents\\Academic Large Documents\\Tethered Shooting\\process.bat");
	if (!processor.exists()) {
	this.infoWindow("Zotfile Error","Conversion script not found at path "+this.prefs.getCharPref("converterPath"),8000);
	return 0;
	}

	// create an nsIProcess
	var process = Components.classes["@mozilla.org/process/util;1"]
	.createInstance(Components.interfaces.nsIProcess);
	process.init(processor);

	// Run the process.
	// If first param is true, calling thread will be blocked until
	// called process terminates.
	// Second and third params are used to pass command-line arguments
	// to the process.
	var args = [filePath.match(/(.*)\.\w+$/)[1]];
	process.run(true, args, args.length);
	return(process.exitValue);
	},

	getFilename: function(item){
	// create the new filename from the selected item
	var item_type = item.getType();
	var rename_rule=this.prefs.getCharPref("renameFormat");
	if(item_type==19) var rename_rule=this.prefs.getCharPref("renameFormat_patent");
	if (!this.prefs.getBoolPref("useZoteroToRename")) {

	var filename=this.replaceWildcard(item, rename_rule);
	//var filename = author + "_" + year + "_" + title;

	// Strip potentially invalid characters
	// (code line adopted from Zotero)
	var filename = filename.replace(/[\/\\\?\*:\|"<>\.]/g, '');

	// replace blanks with '_' if option selected
	if (this.prefs.getBoolPref("replace_blanks")) var filename = filename.replace(/ /g, '_');

	}
	if (this.prefs.getBoolPref("useZoteroToRename")) filename=Zotero.Attachments.getFileBaseNameFromItem(item.itemID);
	return(filename);
	},

	// Attach Converted Copy of File from Download Folder
	// This code is just copied from the subsequent function
	AttachConvertedFile: function(){
	var items = ZoteroPane.getSelectedItems();
	var item = items[0];

	//check whether it really is an bibliographic item (no Attachment, note or collection)
	if (!item.isAttachment() & !item.isCollection() & !item.isNote()) {

	// create the new filename from the selected item
	filename=this.getFilename(item);

	// get the last modified file from a directory
	file=this.lastFileInDir(this.prefs.getCharPref("source_dir"), this.getpara("filetypes"));
	if(file!=-1 & file!=-2 ) {
	var file_oldpath=file.leafName;

	// complete filename with extension
	var filetype=this.getFiletype(file.leafName);
	var filename = filename + "." + filetype;

	// confirmation from user
	var confirmed=1;
	if (this.prefs.getBoolPref("confirmation")) var confirmed=confirm("Do you want to rename and link the file \'" + file_oldpath + "\' to the currently selected Zotero item?");
	if(confirmed){

	// set location for renamed file
	if (!this.prefs.getBoolPref("import")) var location=this.getFolder(item,this.prefs.getCharPref("dest_dir"),this.prefs.getCharPref("subfolderFormat"));
	if ( this.prefs.getBoolPref("import")) var location=this.prefs.getCharPref("dest_dir");

	// convert file
	var file_path=this.convertFile(file, location, filename);

	// recreate the file nslFile Object
	// (for some reason the Attachment is linked to the wrong location without recreation)
	var file = Components.classes["@mozilla.org/file/local;1"].
	createInstance(Components.interfaces.nsILocalFile);
	file.initWithPath(file_path);

	// Linked Attachments
	if (!this.prefs.getBoolPref("import")) Zotero.Attachments.linkFromFile(file, item.itemID,item.libraryID);

	// Imported Attachments - Attach last file to selected Zotero item
	if(this.prefs.getBoolPref("import")) {
	// Attach last file to selected Zotero item
	Zotero.Attachments.importFromFile(file, item.itemID,item.libraryID);

	//Delete the old file that is not longer needed
	file.remove(false);
	}

	// Show message
	this.infoWindow("Zotfile Report","File \'" + file_oldpath + "\' changed to \'" + file.leafName + "\' and added as an attachment.",8000);
	}
	}
	else this.infoWindow("Zotfile Error","Unable to find file in " + this.prefs.getCharPref("source_dir"),8000);
	}
	else this.infoWindow("Zotfile Error","Selected item is either an Attachment, a note, or a collection.",8000);
	},

	// Attach New File from Download Folder
	AttachNewFile: function(){
	var items = ZoteroPane.getSelectedItems();
	var item = items[0];

	//check whether it really is an bibliographic item (no Attachment, note or collection)
	if (!item.isAttachment() & !item.isCollection() & !item.isNote()) {

	// create the new filename from the selected item
	filename=this.getFilename(item);

	// get the last modified file from a directory
	file=this.lastFileInDir(this.prefs.getCharPref("source_dir"), this.getpara("filetypes"));
	if(file!=-1 & file!=-2 ) {
	var file_oldpath=file.leafName;

	// complete filename with extension
	var filetype=this.getFiletype(file.leafName);
	var filename = filename + "." + filetype;

	// confirmation from user
	var confirmed=1;
	if (this.prefs.getBoolPref("confirmation")) var confirmed=confirm("Do you want to rename and link the file \'" + file_oldpath + "\' to the currently selected Zotero item?");
	if(confirmed){

	// set location for renamed file
	if (!this.prefs.getBoolPref("import")) var location=this.getFolder(item,this.prefs.getCharPref("dest_dir"),this.prefs.getCharPref("subfolderFormat"));
	if ( this.prefs.getBoolPref("import")) var location=this.prefs.getCharPref("dest_dir");

	// move file
	var file_path=this.moveFile(file, location, filename);

	// recreate the file nslFile Object
	// (for some reason the Attachment is linked to the wrong location without recreation)
	var file = Components.classes["@mozilla.org/file/local;1"].
	createInstance(Components.interfaces.nsILocalFile);
	file.initWithPath(file_path);

	// Linked Attachments
	if (!this.prefs.getBoolPref("import")) Zotero.Attachments.linkFromFile(file, item.itemID,item.libraryID);

	// Imported Attachments - Attach last file to selected Zotero item
	if(this.prefs.getBoolPref("import")) {
	// Attach last file to selected Zotero item
	Zotero.Attachments.importFromFile(file, item.itemID,item.libraryID);

	//Delete the old file that is not longer needed
	file.remove(false);
	}

	// Show message
	this.infoWindow("Zotfile Report","File \'" + file_oldpath + "\' changed to \'" + file.leafName + "\' and added as an attachment.",8000);
	}
	}
	else this.infoWindow("Zotfile Error","Unable to find file in " + this.prefs.getCharPref("source_dir"),8000);
	}
	else this.infoWindow("Zotfile Error","Selected item is either an Attachment, a note, or a collection.",8000);
	},

	// Rename & Move Existing Attachments
	RenameAttachments: function(){
	var items = ZoteroPane.getSelectedItems();

	var confirmed=1;
	if (items.length>=this.prefs.getIntPref("confirmation_batch")) var confirmed=confirm("You are about to rename and move the attachments of " + items.length + " items. Are you sure that you want to proceed? Your call!");
	if(confirmed) for (var i=0; i < items.length; i++) {
	var item = items[i];
	var itemID = item.id;

	// Zotero.Item.isImportedAttachment()
	if(item.isRegularItem()) {
	// get all attachments
	var attachments = item.getAttachments();

	// go through all attachments
	// for (var j=0; j < attachments.length; j++) {
	var j=0;
	if (attachments.length==1) {

	// get current attachments
	var attID = item.getAttachments()[j];
	var att = Zotero.Items.get(attID);

	// get object of attached file
	var infile = att.getFile();

	// create file name using ZotFile rules
	var filename = this.getFilename(item) + "." + this.getFiletype(infile.leafName);

	// rename file associated with attachment
	att.renameAttachmentFile(filename);

	// change title of attachment item
	att.setField('title', filename);
	att.save();

	// (a) LINKED ATTACHMENT TO IMPORTED ATTACHMENT
	if (!att.isImportedAttachment() & this.prefs.getBoolPref("import")) {

	// get object of attached file
	var infile = att.getFile();

	// Attach file to selected Zotero item
	Zotero.Attachments.importFromFile(infile, itemID,item.libraryID);

	// remove file from hard-drive
	infile.remove(false);

	// erase old attachment
	att.erase();

	this.infoWindow("Zotfile Report","Imported Attachment \'" + filename + "\'.",8000);
	}
	// (b) IMPORTED ATTACHMENT TO LINKED ATTACHMENT
	// if (att.isImportedAttachment() & !this.prefs.getBoolPref("import")) {
	if (!this.prefs.getBoolPref("import")) {
	// get object of attached file
	var infile = att.getFile();

	// move pdf file
	var location=this.getFolder(item,this.prefs.getCharPref("dest_dir"),this.prefs.getCharPref("subfolderFormat"));
	var outfile_path=this.moveFile(infile,location , filename);

	// recreate the outfile nslFile Object
	// (for some reason the Attachment is linked to the wrong location without recreation)
	var outfile = Components.classes["@mozilla.org/file/local;1"].
	createInstance(Components.interfaces.nsILocalFile);
	outfile.initWithPath(outfile_path);

	// create linked attachment
	Zotero.Attachments.linkFromFile(outfile, itemID,item.libraryID);

	// erase old attachment
	att.erase();

	this.infoWindow("Zotfile Report","Linked Attachment \'" + filename + "\'.",8000);

	}
	}

	}
	}
	}
	};



	// Initialize the utility
	//window.addEventListener('load', function(e) { Zotero.ZotFile.init(); }, false);


	//check whether it really is an bibliographic item (no Attachment, note or collection)
	//if (!item.isAttachment() & !item.isCollection() & !item.isNote()) {



	//if (item.isAttachment()) {
	// consider that you there are multiple senarios
	// a) attachment is linked, and the goal is to attach it
	// b) attachment is attached, and the goal is to link it
	// make sure that nothing bad happens if the attachment is already named correctly

	//}
	//if (item.isCollection() \| item.isNote()) this.infoWindow("Zotfile Error","Selected item is either a note, or a collection.",8000);
	pref("extensions.zotfile.source_dir","~/Downloads");
	pref("extensions.zotfile.dest_dir", "~/Documents/Literatur");
	pref("extensions.zotfile.useZoteroToRename", false);
	pref("extensions.zotfile.renameFormat", "%a_%y_%t");
	pref("extensions.zotfile.renameFormat_patent", "%a_%y_%t");
	pref("extensions.zotfile.max_titlelength", 80);
	pref("extensions.zotfile.max_authors", 2);
	pref("extensions.zotfile.add_etal", true);
	pref("extensions.zotfile.etal", " et al");
	pref("extensions.zotfile.confirmation", true);
	pref("extensions.zotfile.confirmation_batch", 2);
	pref("extensions.zotfile.import", false);
	pref("extensions.zotfile.replace_blanks", false);
	pref("extensions.zotfile.subfolder", false);
	pref("extensions.zotfile.subfolderFormat", "/%w/%y");
	pref("extensions.zotfile.converterPath", "c:\\Documents and Settings\\Avram\\My Documents\\Academic Large Documents\\Tethered Shooting\\process.bat");