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October 29, 2015 21:37
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(partial) EasyBuild log for failed build of /tmp/eb-unkxXp/files_pr960/Celera_Assembler-8.3rc2-goolf-1.4.10-Python-2.7.5.eb (PR #960)
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== 2015-10-29 22:32:02,007 main.MakeCp INFO This is EasyBuild 2.4.0.dev0 (framework: 2.4.0.dev0, easyblocks: 2.4.0.dev0) on host gligar03.gligar.os. | |
== 2015-10-29 22:32:02,008 main.MakeCp INFO This is easyblock MakeCp from module easybuild.easyblocks.generic.makecp (/user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyblocks-2.4.0.dev0-py2.6.egg/easybuild/easyblocks/generic/makecp.pyc) | |
== 2015-10-29 22:32:02,009 main.MakeCp INFO Build dir set to /tmp/vsc40023/easybuild_build/Celera_Assembler/8.3rc2/goolf-1.4.10-Python-2.7.5 | |
== 2015-10-29 22:32:02,009 main.config DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software | |
== 2015-10-29 22:32:02,010 main.ActiveMNS DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x22a7890> | |
== 2015-10-29 22:32:02,011 main.ActiveMNS DEBUG Obtained subdir Celera_Assembler/8.3rc2-goolf-1.4.10-Python-2.7.5 | |
== 2015-10-29 22:32:02,011 main.MakeCp INFO Install dir set to /user/scratch/gent/vsc400/vsc40023/easybuild_REGTEST/SL6/sandybridge/software/Celera_Assembler/8.3rc2-goolf-1.4.10-Python-2.7.5 | |
== 2015-10-29 22:32:02,012 main.MakeCp INFO Init completed for application name Celera_Assembler version 8.3rc2 | |
== 2015-10-29 22:32:02,012 main.easyblock INFO Obtained application instance of for Celera_Assembler (easyblock: MakeCp) | |
== 2015-10-29 22:32:02,012 main.easyblock DEBUG Skip set to False | |
== 2015-10-29 22:32:02,013 main.MakeCp INFO building and installing Celera_Assembler/8.3rc2-goolf-1.4.10-Python-2.7.5... | |
== 2015-10-29 22:32:02,014 main.MakeCp DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
== 2015-10-29 22:32:02,014 main.MakeCp INFO fetching files... | |
== 2015-10-29 22:32:02,015 main.MakeCp INFO Starting fetch step | |
== 2015-10-29 22:32:02,018 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['wgs-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Python-2.7.5', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['cd kmer && make install && cd .. && cd src && ', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['8.3rc2', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://wgs-assembler.sourceforge.net/', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Celera Assembler is a de novo whole-genome shotgun (WGS) DNA \n sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary \n data produced by whole-genome shotgun sequencing. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PATH': 'Linux-amd64/bin', 'LD_LIBRARY_PATH': 'Linux-amd64/lib'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Python', 'short_mod_name': 'Python/2.7.5-goolf-1.4.10', 'external_module': False, 'versionsuffix': '', 'full_mod_name': 'Python/2.7.5-goolf-1.4.10', 'version': '2.7.5', 'hidden': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['Linux-amd64/bin/runCA'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Celera_Assembler', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [[('http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-%(version)s/', 'download')], 'List of URLs for source files', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [['*'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
== 2015-10-29 22:32:02,021 main.easyconfig.templates DEBUG version found in easyconfig is 8.3rc2 | |
== 2015-10-29 22:32:02,022 main.easyconfig.templates DEBUG version found in easyconfig is 8.3rc2 | |
== 2015-10-29 22:32:02,022 main.easyconfig.templates DEBUG version found in easyconfig is 8.3rc2 | |
== 2015-10-29 22:32:02,023 main.easyconfig.templates DEBUG name: name, config: Celera_Assembler | |
== 2015-10-29 22:32:02,023 main.easyconfig.templates DEBUG name: version, config: 8.3rc2 | |
== 2015-10-29 22:32:02,024 main.easyconfig.templates DEBUG name: versionsuffix, config: -Python-2.7.5 | |
== 2015-10-29 22:32:02,024 main.easyconfig.templates DEBUG name: versionprefix, config: | |
== 2015-10-29 22:32:02,026 main.easyconfig.templates DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'configure_cmd_prefix': ['', 'Prefix to be glued before ./configure', (1, 'easyblock-specific')], 'postinstallcmds': [[], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['wgs-%(version)s.tar.bz2'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Python-2.7.5', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'with_configure': [False, 'Run configure script before building', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['cd kmer && make install && cd .. && cd src && ', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': [None, 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['8.3rc2', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://wgs-assembler.sourceforge.net/', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'tar_config_opts': [False, 'Override tar settings as determined by configure.', (1, 'easyblock-specific')], 'description': [' Celera Assembler is a de novo whole-genome shotgun (WGS) DNA \n sequence assembler. It reconstructs long sequences of genomic DNA from fragmentary \n data produced by whole-genome shotgun sequencing. ', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{'PATH': 'Linux-amd64/bin', 'LD_LIBRARY_PATH': 'Linux-amd64/lib'}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'dummy': False, 'toolchain': {'version': '1.4.10', 'name': 'goolf'}, 'name': 'Python', 'short_mod_name': 'Python/2.7.5-goolf-1.4.10', 'external_module': False, 'versionsuffix': '', 'full_mod_name': 'Python/2.7.5-goolf-1.4.10', 'version': '2.7.5', 'hidden': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'prefix_opt': ['--prefix=', 'Prefix command line option for configure script', (1, 'easyblock-specific')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'parallel': [1, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [[], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['Linux-amd64/bin/runCA'], 'dirs': []}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': [None, 'Indicates if a test should be run after make; should specify argument after make (for e.g.,"test" for make test)', (3, 'build')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [[], "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['Celera_Assembler', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '1.4.10', 'name': 'goolf'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [[('http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-%(version)s/', 'download')], 'List of URLs for source files', (3, 'build')], 'easyblock': ['MakeCp', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'files_to_copy': [['*'], 'List of files or dirs to copy', (0, 'mandatory')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]} | |
== 2015-10-29 22:32:02,030 main.easyconfig.templates DEBUG version found in easyconfig is 8.3rc2 | |
== 2015-10-29 22:32:02,030 main.easyconfig.templates DEBUG version found in easyconfig is 8.3rc2 | |
== 2015-10-29 22:32:02,031 main.easyconfig.templates DEBUG version found in easyconfig is 8.3rc2 | |
== 2015-10-29 22:32:02,032 main.easyconfig.templates DEBUG name: name, config: Celera_Assembler | |
== 2015-10-29 22:32:02,032 main.easyconfig.templates DEBUG name: version, config: 8.3rc2 | |
== 2015-10-29 22:32:02,032 main.easyconfig.templates DEBUG name: versionsuffix, config: -Python-2.7.5 | |
== 2015-10-29 22:32:02,033 main.easyconfig.templates DEBUG name: versionprefix, config: | |
== 2015-10-29 22:32:02,033 main.MakeCp INFO Running method fetch_step part of step fetch | |
== 2015-10-29 22:32:02,034 main.MakeCp WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2015-10-29 22:32:02,041 main.filetools INFO Command eb found at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb | |
== 2015-10-29 22:32:02,042 main.easyconfig.tools DEBUG Also considering installation prefix /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed... | |
== 2015-10-29 22:32:02,042 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /tmp/eb-unkxXp/files_pr960/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,043 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,044 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratchdelcatty/gent/gvo000/gvo00002/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-2.4.0.dev0-py2.6.egg/easybuild/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,045 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyblocks-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,045 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_framework-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,046 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,046 main.easyconfig.tools DEBUG Added /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2015-10-29 22:32:02,047 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/vsc_base-2.2.5-py2.6.egg/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,047 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.6/site-packages/keyring-3.8/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,052 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,053 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python26.zip/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,054 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,054 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/plat-linux2/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,055 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/lib-tk/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,055 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/lib-old/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,056 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/lib-dynload/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,056 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,057 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/PIL/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,057 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/pbs/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,058 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/gtk-2.0/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,058 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.6/site-packages/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,059 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.6/site-packages/setuptools-0.6c11-py2.6.egg-info/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,059 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.6/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,060 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/gitdb/ext/async/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,060 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.6/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,061 main.easyconfig.tools DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs | |
== 2015-10-29 22:32:02,106 main.filetools DEBUG Not creating existing path /user/data/gent/vsc400/vsc40023/EasyBuild/sources/c/Celera_Assembler | |
== 2015-10-29 22:32:02,106 main.MakeCp DEBUG Trying to download file wgs-8.3rc2.tar.bz2 from http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3rc2//wgs-8.3rc2.tar.bz2/download to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/c/Celera_Assembler/wgs-8.3rc2.tar.bz2 ... | |
== 2015-10-29 22:32:02,107 main.filetools DEBUG Trying to download wgs-8.3rc2.tar.bz2 from http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3rc2//wgs-8.3rc2.tar.bz2/download to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/c/Celera_Assembler/wgs-8.3rc2.tar.bz2 | |
== 2015-10-29 22:32:02,107 main.filetools DEBUG Using timeout of 10 seconds for initiating download | |
== 2015-10-29 22:32:02,112 main.filetools DEBUG Not creating existing path /user/data/gent/vsc400/vsc40023/EasyBuild/sources/c/Celera_Assembler | |
== 2015-10-29 22:32:02,363 main.filetools WARNING URL http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3rc2//wgs-8.3rc2.tar.bz2/download was not found (HTTP response code 404), not trying again | |
== 2015-10-29 22:32:02,363 main.filetools WARNING Download of http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3rc2//wgs-8.3rc2.tar.bz2/download to /user/data/gent/vsc400/vsc40023/EasyBuild/sources/c/Celera_Assembler/wgs-8.3rc2.tar.bz2 failed, done trying | |
== 2015-10-29 22:32:02,371 main ERROR Couldn't find file wgs-8.3rc2.tar.bz2 anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-unkxXp/files_pr960/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /tmp/eb-unkxXp/files_pr960/Celera_Assembler/wgs-8.3rc2.tar.bz2, /tmp/eb-unkxXp/files_pr960/wgs-8.3rc2.tar.bz2, /tmp/eb-unkxXp/files_pr960/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /tmp/eb-unkxXp/files_pr960/Celera_Assembler/wgs-8.3rc2.tar.bz2, /tmp/eb-unkxXp/files_pr960/wgs-8.3rc2.tar.bz2, /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs/Celera_Assembler/wgs-8.3rc2.tar.bz2, /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs/wgs-8.3rc2.tar.bz2, /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs/Celera_Assembler/wgs-8.3rc2.tar.bz2, /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.6/site-packages/easybuild_easyconfigs-2.4.0.dev0-py2.6.egg/easybuild/easyconfigs/wgs-8.3rc2.tar.bz2, /user/data/gent/vsc400/vsc40023/EasyBuild/sources/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /user/data/gent/vsc400/vsc40023/EasyBuild/sources/Celera_Assembler/wgs-8.3rc2.tar.bz2, /user/data/gent/vsc400/vsc40023/EasyBuild/sources/wgs-8.3rc2.tar.bz2, /apps/gent/source/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /apps/gent/source/Celera_Assembler/wgs-8.3rc2.tar.bz2, /apps/gent/source/wgs-8.3rc2.tar.bz2, /nfsmuk/apps/gent/source/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /nfsmuk/apps/gent/source/Celera_Assembler/wgs-8.3rc2.tar.bz2, /nfsmuk/apps/gent/source/wgs-8.3rc2.tar.bz2, http://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/wgs-8.3rc2//wgs-8.3rc2.tar.bz2/download (at easybuild/framework/easyblock.py:596 in obtain_file) | |
== 2015-10-29 22:32:02,375 main.easyblock WARNING build failed (first 300 chars): Couldn't find file wgs-8.3rc2.tar.bz2 anywhere, and downloading it didn't work either... Paths attempted (in order): /tmp/eb-unkxXp/files_pr960/c/Celera_Assembler/wgs-8.3rc2.tar.bz2, /tmp/eb-unkxXp/files_pr960/Celera_Assembler/wgs-8.3rc2.tar.bz2, /tmp/eb-unkxXp/files_pr960/wgs-8.3rc2.tar.bz2, /tmp/e | |
== 2015-10-29 22:32:02,378 main.MakeCp INFO Closing log for application name Celera_Assembler version 8.3rc2 |
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