Created
January 12, 2011 16:16
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latest bamtools fail
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cjfields@pyrimidine:~/src/bamtools/build$ cmake .. | |
-- The C compiler identification is GNU | |
-- The CXX compiler identification is GNU | |
-- Check for working C compiler: /usr/bin/gcc | |
-- Check for working C compiler: /usr/bin/gcc -- works | |
-- Detecting C compiler ABI info | |
-- Detecting C compiler ABI info - done | |
-- Check for working CXX compiler: /usr/bin/c++ | |
-- Check for working CXX compiler: /usr/bin/c++ -- works | |
-- Detecting CXX compiler ABI info | |
-- Detecting CXX compiler ABI info - done | |
-- Configuring done | |
-- Generating done | |
-- Build files have been written to: /home/cjfields/src/bamtools/build | |
cjfields@pyrimidine:~/src/bamtools/build$ make | |
Scanning dependencies of target SharedHeaders | |
[ 0%] Exporting SharedHeaders | |
[ 1%] Built target SharedHeaders | |
Scanning dependencies of target APIHeaders | |
[ 1%] Exporting APIHeaders | |
[ 3%] Built target APIHeaders | |
Scanning dependencies of target BamTools | |
[ 4%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamAlignment.cpp.o | |
[ 6%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamIndex.cpp.o | |
[ 8%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamMultiReader.cpp.o | |
[ 9%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamReader.cpp.o | |
[ 11%] Building CXX object src/api/CMakeFiles/BamTools.dir/BamWriter.cpp.o | |
[ 12%] Building CXX object src/api/CMakeFiles/BamTools.dir/BGZF.cpp.o | |
[ 14%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamHeader.cpp.o | |
[ 16%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroup.cpp.o | |
[ 17%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamReadGroupDictionary.cpp.o | |
[ 19%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequence.cpp.o | |
[ 20%] Building CXX object src/api/CMakeFiles/BamTools.dir/SamSequenceDictionary.cpp.o | |
[ 22%] Building CXX object src/api/CMakeFiles/BamTools.dir/internal/BamHeader_p.cpp.o | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:12:30: error: api/BamConstants.h: No such file or directory | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp: In member function ‘bool BamTools::Internal::BamHeader::BamHeaderPrivate::CheckMagicNumber(BamTools::BgzfData*)’: | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:72: error: ‘Constants’ has not been declared | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:73: error: ‘buffer’ was not declared in this scope | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:73: error: ‘Constants’ has not been declared | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:73: error: ‘Constants’ has not been declared | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:79: error: ‘buffer’ was not declared in this scope | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:79: error: ‘Constants’ has not been declared | |
/home/cjfields/src/bamtools/src/api/internal/BamHeader_p.cpp:79: error: ‘Constants’ has not been declared | |
make[2]: *** [src/api/CMakeFiles/BamTools.dir/internal/BamHeader_p.cpp.o] Error 1 | |
make[1]: *** [src/api/CMakeFiles/BamTools.dir/all] Error 2 | |
make: *** [all] Error 2 |
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