boegel/PSORTb-3.0.4-foss-2016a-Perl-5.22.1_partial.log

## PSORTb-3.0.4-foss-2016a-Perl-5.22.1_partial.log
== 2016-08-10 19:44:57,447 variables.py:483 DEBUG join name FFTW_INC_DIR others ('FFT_INC_DIR',)
== 2016-08-10 19:44:57,447 variables.py:516 DEBUG setdefault: name FFTW_INC_DIR initialising.
== 2016-08-10 19:44:57,447 variables.py:490 DEBUG join other FFT_INC_DIR in self: other [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']]
== 2016-08-10 19:44:57,447 variables.py:532 DEBUG Passthrough to LISTCLASS function nappend
== 2016-08-10 19:44:57,448 variables.py:516 DEBUG setdefault: name FFTW_INC_DIR initialising.
== 2016-08-10 19:44:57,448 variables.py:261 DEBUG _is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (<class 'easybuild.tools.variables.AbsPathList'>)
== 2016-08-10 19:44:57,448 variables.py:267 DEBUG _is_protected: True value /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include'])
== 2016-08-10 19:44:57,448 variables.py:297 DEBUG nappend: value ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include'] newvalue ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include'] position None
== 2016-08-10 19:44:57,448 variables.py:483 DEBUG join name FFTW_LIB_DIR others ('FFT_LIB_DIR',)
== 2016-08-10 19:44:57,449 variables.py:516 DEBUG setdefault: name FFTW_LIB_DIR initialising.
== 2016-08-10 19:44:57,449 variables.py:490 DEBUG join other FFT_LIB_DIR in self: other [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']]
== 2016-08-10 19:44:57,449 variables.py:532 DEBUG Passthrough to LISTCLASS function nappend
== 2016-08-10 19:44:57,449 variables.py:516 DEBUG setdefault: name FFTW_LIB_DIR initialising.
== 2016-08-10 19:44:57,450 variables.py:261 DEBUG _is_protected: [<class 'easybuild.tools.variables.AbsPathList'>] value /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (<class 'easybuild.tools.variables.AbsPathList'>)
== 2016-08-10 19:44:57,450 variables.py:267 DEBUG _is_protected: True value /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib'])
== 2016-08-10 19:44:57,450 variables.py:297 DEBUG nappend: value ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib'] newvalue ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib'] position None
== 2016-08-10 19:44:57,450 variables.py:483 DEBUG join name FFTW_STATIC_LIBS others ('FFT_STATIC_LIBS',)
== 2016-08-10 19:44:57,450 variables.py:516 DEBUG setdefault: name FFTW_STATIC_LIBS initialising.
== 2016-08-10 19:44:57,451 variables.py:490 DEBUG join other FFT_STATIC_LIBS in self: other [['fftw3']]
== 2016-08-10 19:44:57,451 variables.py:532 DEBUG Passthrough to LISTCLASS function nappend
== 2016-08-10 19:44:57,451 variables.py:516 DEBUG setdefault: name FFTW_STATIC_LIBS initialising.
== 2016-08-10 19:44:57,451 variables.py:261 DEBUG _is_protected: [<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>] value libfftw3.a (<class 'easybuild.tools.toolchain.variables.CommaStaticLibs'>)
== 2016-08-10 19:44:57,451 variables.py:267 DEBUG _is_protected: True value libfftw3.a (['fftw3'])
== 2016-08-10 19:44:57,452 variables.py:297 DEBUG nappend: value ['fftw3'] newvalue ['fftw3'] position None
== 2016-08-10 19:44:57,452 variables.py:483 DEBUG join name FFTW_STATIC_LIBS_MT others ('FFT_STATIC_LIBS_MT',)
== 2016-08-10 19:44:57,452 variables.py:516 DEBUG setdefault: name FFTW_STATIC_LIBS_MT initialising.
== 2016-08-10 19:44:57,452 variables.py:490 DEBUG join other FFT_STATIC_LIBS_MT in self: other [['fftw3'], ['pthread']]
== 2016-08-10 19:44:57,453 variables.py:532 DEBUG Passthrough to LISTCLASS function nappend
== 2016-08-10 19:44:57,453 variables.py:516 DEBUG setdefault: name FFTW_STATIC_LIBS_MT initialising.
== 2016-08-10 19:44:57,453 variables.py:267 DEBUG _is_protected: False value libfftw3.a (['fftw3'])
== 2016-08-10 19:44:57,453 variables.py:297 DEBUG nappend: value ['fftw3'] newvalue ['fftw3'] position None
== 2016-08-10 19:44:57,453 variables.py:532 DEBUG Passthrough to LISTCLASS function nappend
== 2016-08-10 19:44:57,454 variables.py:267 DEBUG _is_protected: False value libpthread.a (['pthread'])
== 2016-08-10 19:44:57,454 variables.py:297 DEBUG nappend: value ['pthread'] newvalue ['pthread'] position None
== 2016-08-10 19:44:57,454 fft.py:82 DEBUG set_variables: FFT variables {'CPPFLAGS': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']], 'MPI_INC_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/include']], 'LIBSCALAPACK': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPI_LIB_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib']], 'LAPACK_INC_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']], 'FFT_STATIC_LIBS': [['fftw3']], 'CXXFLAGS': [['O2'], ['march=native']], 'BLAS_LAPACK_LIB_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']], 'LIBFFT': [['fftw3']], 'MPICC': [['mpicc', '']], 'MPI_LIB_STATIC': [[]], 'LIBS': [['pthread'], ['m']], 'LIBLAPACK': [['openblas'], ['gfortran']], 'SCALAPACK_LIB_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib']], 'FFTW_INC_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']], 'FFT_STATIC_LIBS_MT': [['fftw3'], ['pthread']], 'LIBSCALAPACK_MT_ONLY': [['scalapack'], ['gfortran']], 'LIBLAPACK_MT': [['openblas'], ['gfortran']], 'FLIBS': [['gfortran']], 'FFTW_STATIC_LIBS': [['fftw3']], 'BLAS_STATIC_LIBS': [['openblas'], ['gfortran']], 'SCALAPACK_MT_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'LIBSCALAPACK_MT': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']], 'F90': [['gfortran', None]], 'OMPI_F77': [['gfortran']], 'FFT_INC_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']], 'F90FLAGS': [['O2'], ['march=native']], 'MPICXX': [['mpicxx', '']], 'OMPI_F90': [['gfortran']], 'MPIFC': [['mpifort', '']], 'BLAS_LIB_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']], 'FFT_LIB_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']], 'LDFLAGS': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib64', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']], 'BLAS_LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CC': [['gcc', None]], 'FFLAGS': [['O2'], ['march=native']], 'MPIF90': [['mpifort', '']], 'LAPACK_STATIC_LIBS': [['openblas'], ['gfortran']], 'LIBLAPACK_ONLY': [['openblas'], ['gfortran']], 'FFTW_STATIC_LIBS_MT': [['fftw3'], ['pthread']], 'LIBLAPACK_MT_ONLY': [['openblas'], ['gfortran']], 'LIBBLAS': [['openblas'], ['gfortran']], 'SCALAPACK_INC_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include']], 'OMPI_CC': [['gcc']], 'OPTFLAGS': [['O2'], ['march=native']], 'FCFLAGS': [['O2'], ['march=native']], 'PRECFLAGS': [], 'F77': [['gfortran', None]], 'LIBSCALAPACK_ONLY': [['scalapack'], ['gfortran']], 'LAPACK_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'LAPACK_LIB_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']], 'BLAS_LAPACK_STATIC_LIBS': [['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'MPIF77': [['mpifort', '']], 'LIBBLAS_MT': [['openblas'], ['gfortran']], 'CXX': [['g++', None]], 'BLAS_LAPACK_INC_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']], 'OMPI_FC': [['gfortran']], 'BLAS_INC_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']], 'LIBFFT_MT': [['fftw3'], ['pthread']], 'MPI_LIB_SHARED': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib/libmpi.so']], 'FC': [['gfortran', None]], 'SCALAPACK_STATIC_LIBS': [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']], 'CFLAGS': [['O2'], ['march=native']], 'BLAS_MT_STATIC_LIBS': [['openblas'], ['gfortran']], 'FFTW_LIB_DIR': [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']], 'OMPI_CXX': [['g++']]}
== 2016-08-10 19:44:57,454 toolchain.py:217 DEBUG set_variables: toolchain variables. Do nothing.
== 2016-08-10 19:44:57,454 toolchain.py:643 DEBUG prepare: set additional variables onlymod=False
== 2016-08-10 19:44:57,455 toolchain.py:269 DEBUG get_software_root software root /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a for Perl was found in environment
== 2016-08-10 19:44:57,455 toolchain.py:269 DEBUG get_software_root software root /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a for libpsortb was found in environment
== 2016-08-10 19:44:57,455 toolchain.py:269 DEBUG get_software_root software root /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1 for BioPerl was found in environment
== 2016-08-10 19:44:57,455 toolchain.py:269 DEBUG get_software_root software root /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11 for BLAST+ was found in environment
== 2016-08-10 19:44:57,456 toolchain.py:269 DEBUG get_software_root software root /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/pftoolsV3/20160324-foss-2016a for pftoolsV3 was found in environment
== 2016-08-10 19:44:57,456 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,456 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,456 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,456 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a subdirs ['include']
== 2016-08-10 19:44:57,457 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/include was not found
== 2016-08-10 19:44:57,457 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,457 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,457 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,457 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a subdirs ['lib64', 'lib']
== 2016-08-10 19:44:57,458 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib64 was not found
== 2016-08-10 19:44:57,459 variables.py:198 DEBUG append_subdirs: added directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib
== 2016-08-10 19:44:57,459 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,459 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,459 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,460 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a subdirs ['include']
== 2016-08-10 19:44:57,461 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/include was not found
== 2016-08-10 19:44:57,461 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,461 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,461 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,462 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a subdirs ['lib64', 'lib']
== 2016-08-10 19:44:57,462 variables.py:198 DEBUG append_subdirs: added directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib64
== 2016-08-10 19:44:57,462 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib was not found
== 2016-08-10 19:44:57,463 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,463 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,463 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,463 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1 subdirs ['include']
== 2016-08-10 19:44:57,464 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/include was not found
== 2016-08-10 19:44:57,464 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,464 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,464 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,464 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1 subdirs ['lib64', 'lib']
== 2016-08-10 19:44:57,465 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib64 was not found
== 2016-08-10 19:44:57,466 variables.py:198 DEBUG append_subdirs: added directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib
== 2016-08-10 19:44:57,466 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,466 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,466 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,466 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11 subdirs ['include']
== 2016-08-10 19:44:57,467 variables.py:198 DEBUG append_subdirs: added directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/include
== 2016-08-10 19:44:57,468 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,468 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,468 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,468 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11 subdirs ['lib64', 'lib']
== 2016-08-10 19:44:57,468 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib64 was not found
== 2016-08-10 19:44:57,469 variables.py:198 DEBUG append_subdirs: added directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib
== 2016-08-10 19:44:57,469 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,469 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,470 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,470 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/pftoolsV3/20160324-foss-2016a subdirs ['include']
== 2016-08-10 19:44:57,471 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/pftoolsV3/20160324-foss-2016a/include was not found
== 2016-08-10 19:44:57,471 variables.py:542 DEBUG Passthrough to LISTCLASS element function append_subdirs
== 2016-08-10 19:44:57,471 variables.py:267 DEBUG _is_protected: False value None (None)
== 2016-08-10 19:44:57,471 variables.py:297 DEBUG nappend: value None newvalue [] position None
== 2016-08-10 19:44:57,472 variables.py:186 DEBUG append_subdirs: base /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/pftoolsV3/20160324-foss-2016a subdirs ['lib64', 'lib']
== 2016-08-10 19:44:57,472 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/pftoolsV3/20160324-foss-2016a/lib64 was not found
== 2016-08-10 19:44:57,472 variables.py:200 WARNING flags_for_subdirs: directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/pftoolsV3/20160324-foss-2016a/lib was not found
== 2016-08-10 19:44:57,472 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include'], [], [], [], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/include'], []] [6, 5, 4, 0]
== 2016-08-10 19:44:57,473 variables.py:407 DEBUG __str__: return -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/include'], []])
== 2016-08-10 19:44:57,473 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/include']] []
== 2016-08-10 19:44:57,473 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/include']])
== 2016-08-10 19:44:57,473 variables.py:369 DEBUG sanitize: to_remove in [['scalapack'], ['openblas'], ['openblas'], ['gfortran'], ['gfortran'], ['gfortran']] [4, 3, 1]
== 2016-08-10 19:44:57,473 variables.py:378 DEBUG idx 1 len 3
== 2016-08-10 19:44:57,474 variables.py:380 DEBUG sanitize: JOIN_BEGIN_END idx 1 joining -lopenblas and -lscalapack
== 2016-08-10 19:44:57,474 variables.py:407 DEBUG __str__: return -lscalapack -lopenblas -lgfortran (self: [['scalapack', 'openblas'], ['gfortran']])
== 2016-08-10 19:44:57,474 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib']] []
== 2016-08-10 19:44:57,474 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib']])
== 2016-08-10 19:44:57,475 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']] []
== 2016-08-10 19:44:57,475 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']])
== 2016-08-10 19:44:57,475 variables.py:369 DEBUG sanitize: to_remove in [['fftw3']] []
== 2016-08-10 19:44:57,475 variables.py:407 DEBUG __str__: return libfftw3.a (self: [['fftw3']])
== 2016-08-10 19:44:57,476 variables.py:407 DEBUG __str__: return -O2 -march=native (self: [['O2'], ['march=native']])
== 2016-08-10 19:44:57,476 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']] [0]
== 2016-08-10 19:44:57,476 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']])
== 2016-08-10 19:44:57,476 variables.py:369 DEBUG sanitize: to_remove in [['fftw3']] []
== 2016-08-10 19:44:57,476 variables.py:407 DEBUG __str__: return -lfftw3 (self: [['fftw3']])
== 2016-08-10 19:44:57,477 variables.py:407 DEBUG __str__: return mpicc (self: [['mpicc', '']])
== 2016-08-10 19:44:57,477 variables.py:369 DEBUG sanitize: to_remove in [[]] []
== 2016-08-10 19:44:57,477 variables.py:407 DEBUG __str__: return  (self: [[]])
== 2016-08-10 19:44:57,477 variables.py:369 DEBUG sanitize: to_remove in [['m'], ['pthread']] []
== 2016-08-10 19:44:57,477 variables.py:407 DEBUG __str__: return -lm -lpthread (self: [['m'], ['pthread']])
== 2016-08-10 19:44:57,478 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,478 variables.py:407 DEBUG __str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,478 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib']] []
== 2016-08-10 19:44:57,478 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib']])
== 2016-08-10 19:44:57,478 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']] []
== 2016-08-10 19:44:57,479 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']])
== 2016-08-10 19:44:57,479 variables.py:369 DEBUG sanitize: to_remove in [['fftw3'], ['pthread']] []
== 2016-08-10 19:44:57,479 variables.py:407 DEBUG __str__: return libfftw3.a,libpthread.a (self: [['fftw3'], ['pthread']])
== 2016-08-10 19:44:57,479 variables.py:369 DEBUG sanitize: to_remove in [['scalapack'], ['gfortran']] []
== 2016-08-10 19:44:57,480 variables.py:407 DEBUG __str__: return -lscalapack -lgfortran (self: [['scalapack'], ['gfortran']])
== 2016-08-10 19:44:57,480 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,480 variables.py:407 DEBUG __str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,480 variables.py:369 DEBUG sanitize: to_remove in [['gfortran']] []
== 2016-08-10 19:44:57,480 variables.py:407 DEBUG __str__: return -lgfortran (self: [['gfortran']])
== 2016-08-10 19:44:57,481 variables.py:369 DEBUG sanitize: to_remove in [['fftw3']] []
== 2016-08-10 19:44:57,481 variables.py:407 DEBUG __str__: return libfftw3.a (self: [['fftw3']])
== 2016-08-10 19:44:57,481 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,481 variables.py:407 DEBUG __str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,482 variables.py:369 DEBUG sanitize: to_remove in [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran'], ['pthread']] [3, 2, 1]
== 2016-08-10 19:44:57,482 variables.py:407 DEBUG __str__: return libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (self: [['scalapack'], ['openblas'], ['gfortran'], ['pthread']])
== 2016-08-10 19:44:57,482 variables.py:369 DEBUG sanitize: to_remove in [['scalapack'], ['openblas'], ['openblas'], ['pthread'], ['gfortran'], ['gfortran'], ['gfortran']] [5, 4, 1]
== 2016-08-10 19:44:57,482 variables.py:378 DEBUG idx 1 len 4
== 2016-08-10 19:44:57,482 variables.py:380 DEBUG sanitize: JOIN_BEGIN_END idx 1 joining -lopenblas and -lscalapack
== 2016-08-10 19:44:57,483 variables.py:407 DEBUG __str__: return -lscalapack -lopenblas -lpthread -lgfortran (self: [['scalapack', 'openblas'], ['pthread'], ['gfortran']])
== 2016-08-10 19:44:57,483 variables.py:407 DEBUG __str__: return gfortran (self: [['gfortran', None]])
== 2016-08-10 19:44:57,483 variables.py:407 DEBUG __str__: return gfortran (self: [['gfortran']])
== 2016-08-10 19:44:57,483 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']] []
== 2016-08-10 19:44:57,484 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include']])
== 2016-08-10 19:44:57,484 variables.py:407 DEBUG __str__: return -O2 -march=native (self: [['O2'], ['march=native']])
== 2016-08-10 19:44:57,484 variables.py:407 DEBUG __str__: return mpicxx (self: [['mpicxx', '']])
== 2016-08-10 19:44:57,484 variables.py:407 DEBUG __str__: return gfortran (self: [['gfortran']])
== 2016-08-10 19:44:57,485 variables.py:407 DEBUG __str__: return mpifort (self: [['mpifort', '']])
== 2016-08-10 19:44:57,485 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']] []
== 2016-08-10 19:44:57,485 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']])
== 2016-08-10 19:44:57,485 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']] []
== 2016-08-10 19:44:57,485 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']])
== 2016-08-10 19:44:57,486 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib64', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib64'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib'], []] [1]
== 2016-08-10 19:44:57,486 variables.py:407 DEBUG __str__: return -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib64', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib64'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib'], []])
== 2016-08-10 19:44:57,486 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [1, 0]
== 2016-08-10 19:44:57,486 variables.py:407 DEBUG __str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,487 variables.py:407 DEBUG __str__: return gcc (self: [['gcc', None]])
== 2016-08-10 19:44:57,487 variables.py:407 DEBUG __str__: return -O2 -march=native (self: [['O2'], ['march=native']])
== 2016-08-10 19:44:57,487 variables.py:407 DEBUG __str__: return mpifort (self: [['mpifort', '']])
== 2016-08-10 19:44:57,487 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,488 variables.py:407 DEBUG __str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,488 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,488 variables.py:407 DEBUG __str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,488 variables.py:407 DEBUG __str__: return -fftw3 -pthread (self: [['fftw3'], ['pthread']])
== 2016-08-10 19:44:57,488 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,489 variables.py:407 DEBUG __str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,489 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,489 variables.py:407 DEBUG __str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,489 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include']] []
== 2016-08-10 19:44:57,490 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include']])
== 2016-08-10 19:44:57,490 variables.py:407 DEBUG __str__: return gcc (self: [['gcc']])
== 2016-08-10 19:44:57,490 variables.py:407 DEBUG __str__: return -O2 -march=native (self: [['O2'], ['march=native']])
== 2016-08-10 19:44:57,490 variables.py:407 DEBUG __str__: return -O2 -march=native (self: [['O2'], ['march=native']])
== 2016-08-10 19:44:57,490 variables.py:401 DEBUG __str__: first is None (self [])
== 2016-08-10 19:44:57,491 variables.py:407 DEBUG __str__: return gfortran (self: [['gfortran', None]])
== 2016-08-10 19:44:57,491 variables.py:369 DEBUG sanitize: to_remove in [['scalapack'], ['gfortran']] []
== 2016-08-10 19:44:57,491 variables.py:407 DEBUG __str__: return -lscalapack -lgfortran (self: [['scalapack'], ['gfortran']])
== 2016-08-10 19:44:57,491 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,492 variables.py:407 DEBUG __str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,492 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']] []
== 2016-08-10 19:44:57,492 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib']])
== 2016-08-10 19:44:57,492 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [1, 0]
== 2016-08-10 19:44:57,492 variables.py:407 DEBUG __str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,493 variables.py:407 DEBUG __str__: return mpifort (self: [['mpifort', '']])
== 2016-08-10 19:44:57,493 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,493 variables.py:407 DEBUG __str__: return -lopenblas -lgfortran (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,493 variables.py:407 DEBUG __str__: return g++ (self: [['g++', None]])
== 2016-08-10 19:44:57,494 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include'], ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']] [0]
== 2016-08-10 19:44:57,494 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']])
== 2016-08-10 19:44:57,494 variables.py:407 DEBUG __str__: return gfortran (self: [['gfortran']])
== 2016-08-10 19:44:57,494 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']] []
== 2016-08-10 19:44:57,494 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include']])
== 2016-08-10 19:44:57,495 variables.py:369 DEBUG sanitize: to_remove in [['fftw3'], ['pthread']] []
== 2016-08-10 19:44:57,495 variables.py:407 DEBUG __str__: return -lfftw3 -lpthread (self: [['fftw3'], ['pthread']])
== 2016-08-10 19:44:57,495 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib/libmpi.so']] []
== 2016-08-10 19:44:57,495 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib/libmpi.so (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib/libmpi.so']])
== 2016-08-10 19:44:57,495 variables.py:407 DEBUG __str__: return gfortran (self: [['gfortran', None]])
== 2016-08-10 19:44:57,496 variables.py:369 DEBUG sanitize: to_remove in [['scalapack'], ['gfortran'], ['openblas'], ['gfortran'], ['openblas'], ['gfortran']] [3, 2, 1]
== 2016-08-10 19:44:57,496 variables.py:407 DEBUG __str__: return libscalapack.a,libopenblas.a,libgfortran.a (self: [['scalapack'], ['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,496 variables.py:407 DEBUG __str__: return -O2 -march=native (self: [['O2'], ['march=native']])
== 2016-08-10 19:44:57,496 variables.py:369 DEBUG sanitize: to_remove in [['openblas'], ['gfortran']] []
== 2016-08-10 19:44:57,497 variables.py:407 DEBUG __str__: return libopenblas.a,libgfortran.a (self: [['openblas'], ['gfortran']])
== 2016-08-10 19:44:57,497 variables.py:369 DEBUG sanitize: to_remove in [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']] []
== 2016-08-10 19:44:57,497 variables.py:407 DEBUG __str__: return /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (self: [['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib']])
== 2016-08-10 19:44:57,497 variables.py:407 DEBUG __str__: return g++ (self: [['g++']])
== 2016-08-10 19:44:57,497 toolchain.py:726 DEBUG _setenv_variables: setting variables: donotset=False
== 2016-08-10 19:44:57,498 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include
== 2016-08-10 19:44:57,498 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,498 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,498 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include
== 2016-08-10 19:44:57,498 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,499 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,499 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib
== 2016-08-10 19:44:57,499 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,499 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,499 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2016-08-10 19:44:57,500 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,500 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,500 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2016-08-10 19:44:57,500 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,500 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,501 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib
== 2016-08-10 19:44:57,501 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,501 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,501 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2016-08-10 19:44:57,501 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,502 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,502 toolchain.py:742 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2016-08-10 19:44:57,502 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,502 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,502 toolchain.py:742 DEBUG _setenv_variables: setting environment variable CC to gcc
== 2016-08-10 19:44:57,502 environment.py:97 INFO Environment variable CC set to gcc (previously undefined)
== 2016-08-10 19:44:57,503 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined)
== 2016-08-10 19:44:57,503 toolchain.py:742 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -march=native
== 2016-08-10 19:44:57,503 environment.py:97 INFO Environment variable CFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,503 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,503 toolchain.py:742 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/include
== 2016-08-10 19:44:57,504 environment.py:97 INFO Environment variable CPPFLAGS set to -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/include (previously undefined)
== 2016-08-10 19:44:57,504 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include -I/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/include (previously undefined)
== 2016-08-10 19:44:57,504 toolchain.py:742 DEBUG _setenv_variables: setting environment variable CXX to g++
== 2016-08-10 19:44:57,504 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined)
== 2016-08-10 19:44:57,504 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined)
== 2016-08-10 19:44:57,505 toolchain.py:742 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -march=native
== 2016-08-10 19:44:57,505 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,505 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,505 toolchain.py:742 DEBUG _setenv_variables: setting environment variable F77 to gfortran
== 2016-08-10 19:44:57,505 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,506 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,506 toolchain.py:742 DEBUG _setenv_variables: setting environment variable F90 to gfortran
== 2016-08-10 19:44:57,506 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,506 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,506 toolchain.py:742 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -march=native
== 2016-08-10 19:44:57,506 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,507 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,507 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FC to gfortran
== 2016-08-10 19:44:57,507 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined)
== 2016-08-10 19:44:57,507 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined)
== 2016-08-10 19:44:57,507 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -march=native
== 2016-08-10 19:44:57,508 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,508 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,508 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -march=native
== 2016-08-10 19:44:57,508 environment.py:97 INFO Environment variable FFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,508 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,509 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include
== 2016-08-10 19:44:57,509 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (previously undefined)
== 2016-08-10 19:44:57,509 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (previously undefined)
== 2016-08-10 19:44:57,509 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib
== 2016-08-10 19:44:57,509 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (previously undefined)
== 2016-08-10 19:44:57,510 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (previously undefined)
== 2016-08-10 19:44:57,510 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a
== 2016-08-10 19:44:57,510 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-08-10 19:44:57,510 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-08-10 19:44:57,510 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to -fftw3 -pthread
== 2016-08-10 19:44:57,510 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-08-10 19:44:57,511 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to -fftw3 -pthread (previously undefined)
== 2016-08-10 19:44:57,511 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include
== 2016-08-10 19:44:57,511 environment.py:97 INFO Environment variable FFT_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (previously undefined)
== 2016-08-10 19:44:57,511 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/include (previously undefined)
== 2016-08-10 19:44:57,511 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib
== 2016-08-10 19:44:57,512 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (previously undefined)
== 2016-08-10 19:44:57,512 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib (previously undefined)
== 2016-08-10 19:44:57,512 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a
== 2016-08-10 19:44:57,512 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-08-10 19:44:57,512 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined)
== 2016-08-10 19:44:57,513 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a
== 2016-08-10 19:44:57,513 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-08-10 19:44:57,513 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined)
== 2016-08-10 19:44:57,513 toolchain.py:742 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran
== 2016-08-10 19:44:57,513 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined)
== 2016-08-10 19:44:57,514 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined)
== 2016-08-10 19:44:57,514 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include
== 2016-08-10 19:44:57,514 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,514 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,514 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib
== 2016-08-10 19:44:57,515 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,515 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,515 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2016-08-10 19:44:57,515 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,515 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,515 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libopenblas.a,libgfortran.a
== 2016-08-10 19:44:57,516 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,516 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,516 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib
== 2016-08-10 19:44:57,516 environment.py:97 INFO Environment variable LDFLAGS set to -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib (previously undefined)
== 2016-08-10 19:44:57,516 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/GCCcore/4.9.3/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenBLAS/0.2.15-GCC-4.9.3-2.25-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/FFTW/3.3.4-gompi-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/Perl/5.22.1-foss-2016a/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/libpsortb/1.0-foss-2016a/lib64 -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BioPerl/1.6.924-foss-2016a-Perl-5.22.1/lib -L/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/BLAST+/2.3.0-foss-2016a-Python-2.7.11/lib (previously undefined)
== 2016-08-10 19:44:57,517 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lopenblas -lgfortran
== 2016-08-10 19:44:57,517 environment.py:97 INFO Environment variable LIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,517 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,517 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lopenblas -lgfortran
== 2016-08-10 19:44:57,517 environment.py:97 INFO Environment variable LIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,518 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,518 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3
== 2016-08-10 19:44:57,518 environment.py:97 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined)
== 2016-08-10 19:44:57,518 environment.py:97 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined)
== 2016-08-10 19:44:57,518 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread
== 2016-08-10 19:44:57,519 environment.py:97 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-08-10 19:44:57,519 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined)
== 2016-08-10 19:44:57,519 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lopenblas -lgfortran
== 2016-08-10 19:44:57,519 environment.py:97 INFO Environment variable LIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,519 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,520 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lopenblas -lgfortran
== 2016-08-10 19:44:57,520 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,520 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,520 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lopenblas -lgfortran
== 2016-08-10 19:44:57,520 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,520 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,521 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lopenblas -lgfortran
== 2016-08-10 19:44:57,521 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,521 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,521 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread
== 2016-08-10 19:44:57,521 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined)
== 2016-08-10 19:44:57,522 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined)
== 2016-08-10 19:44:57,522 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lopenblas -lgfortran
== 2016-08-10 19:44:57,522 environment.py:97 INFO Environment variable LIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,522 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lopenblas -lgfortran (previously undefined)
== 2016-08-10 19:44:57,522 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lopenblas -lpthread -lgfortran
== 2016-08-10 19:44:57,523 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-08-10 19:44:57,523 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lopenblas -lpthread -lgfortran (previously undefined)
== 2016-08-10 19:44:57,523 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran
== 2016-08-10 19:44:57,523 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-08-10 19:44:57,523 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-08-10 19:44:57,524 toolchain.py:742 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran
== 2016-08-10 19:44:57,524 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-08-10 19:44:57,524 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined)
== 2016-08-10 19:44:57,524 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPICC to mpicc
== 2016-08-10 19:44:57,524 environment.py:97 INFO Environment variable MPICC set to mpicc (previously undefined)
== 2016-08-10 19:44:57,525 environment.py:97 INFO Environment variable EBVARMPICC set to mpicc (previously undefined)
== 2016-08-10 19:44:57,525 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx
== 2016-08-10 19:44:57,525 environment.py:97 INFO Environment variable MPICXX set to mpicxx (previously undefined)
== 2016-08-10 19:44:57,525 environment.py:97 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined)
== 2016-08-10 19:44:57,525 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort
== 2016-08-10 19:44:57,525 environment.py:97 INFO Environment variable MPIF77 set to mpifort (previously undefined)
== 2016-08-10 19:44:57,526 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined)
== 2016-08-10 19:44:57,526 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort
== 2016-08-10 19:44:57,526 environment.py:97 INFO Environment variable MPIF90 set to mpifort (previously undefined)
== 2016-08-10 19:44:57,526 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined)
== 2016-08-10 19:44:57,526 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort
== 2016-08-10 19:44:57,527 environment.py:97 INFO Environment variable MPIFC set to mpifort (previously undefined)
== 2016-08-10 19:44:57,527 environment.py:97 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined)
== 2016-08-10 19:44:57,527 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/include
== 2016-08-10 19:44:57,527 environment.py:97 INFO Environment variable MPI_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/include (previously undefined)
== 2016-08-10 19:44:57,527 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/include (previously undefined)
== 2016-08-10 19:44:57,528 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib
== 2016-08-10 19:44:57,528 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib (previously undefined)
== 2016-08-10 19:44:57,528 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib (previously undefined)
== 2016-08-10 19:44:57,528 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib/libmpi.so
== 2016-08-10 19:44:57,528 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib/libmpi.so (previously undefined)
== 2016-08-10 19:44:57,529 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/OpenMPI/1.10.2-GCC-4.9.3-2.25/lib/libmpi.so (previously undefined)
== 2016-08-10 19:44:57,529 toolchain.py:742 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to
== 2016-08-10 19:44:57,529 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to  (previously undefined)
== 2016-08-10 19:44:57,529 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to  (previously undefined)
== 2016-08-10 19:44:57,529 toolchain.py:742 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc
== 2016-08-10 19:44:57,530 environment.py:97 INFO Environment variable OMPI_CC set to gcc (previously undefined)
== 2016-08-10 19:44:57,530 environment.py:97 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined)
== 2016-08-10 19:44:57,530 toolchain.py:742 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++
== 2016-08-10 19:44:57,530 environment.py:97 INFO Environment variable OMPI_CXX set to g++ (previously undefined)
== 2016-08-10 19:44:57,530 environment.py:97 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined)
== 2016-08-10 19:44:57,530 toolchain.py:742 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran
== 2016-08-10 19:44:57,531 environment.py:97 INFO Environment variable OMPI_F77 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,531 environment.py:97 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,531 toolchain.py:742 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran
== 2016-08-10 19:44:57,531 environment.py:97 INFO Environment variable OMPI_F90 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,531 environment.py:97 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined)
== 2016-08-10 19:44:57,532 toolchain.py:742 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran
== 2016-08-10 19:44:57,532 environment.py:97 INFO Environment variable OMPI_FC set to gfortran (previously undefined)
== 2016-08-10 19:44:57,532 environment.py:97 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined)
== 2016-08-10 19:44:57,532 toolchain.py:742 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -march=native
== 2016-08-10 19:44:57,532 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,533 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -march=native (previously undefined)
== 2016-08-10 19:44:57,533 toolchain.py:742 DEBUG _setenv_variables: setting environment variable PRECFLAGS to
== 2016-08-10 19:44:57,533 environment.py:97 INFO Environment variable PRECFLAGS set to  (previously undefined)
== 2016-08-10 19:44:57,533 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to  (previously undefined)
== 2016-08-10 19:44:57,533 toolchain.py:742 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include
== 2016-08-10 19:44:57,534 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,534 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/include (previously undefined)
== 2016-08-10 19:44:57,534 toolchain.py:742 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib
== 2016-08-10 19:44:57,534 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,534 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/ScaLAPACK/2.0.2-gompi-2016a-OpenBLAS-0.2.15-LAPACK-3.6.0/lib (previously undefined)
== 2016-08-10 19:44:57,535 toolchain.py:742 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a
== 2016-08-10 19:44:57,535 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-08-10 19:44:57,535 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a,libpthread.a (previously undefined)
== 2016-08-10 19:44:57,535 toolchain.py:742 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libopenblas.a,libgfortran.a
== 2016-08-10 19:44:57,535 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,536 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libopenblas.a,libgfortran.a (previously undefined)
== 2016-08-10 19:44:57,536 easyblock.py:1308 INFO Using /tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/ as start dir
== 2016-08-10 19:44:57,536 easyblock.py:1312 DEBUG Changed to real build directory /tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/ (start_dir)
== 2016-08-10 19:44:57,536 easyblock.py:2126 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2016-08-10 19:44:57,536 build_log.py:227 INFO configuring...
== 2016-08-10 19:44:57,537 easyblock.py:2134 INFO Starting configure step
== 2016-08-10 19:44:57,538 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,539 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,540 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,540 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,540 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,540 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,541 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,543 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,543 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,543 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,543 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,543 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,544 easyblock.py:2137 INFO Running method configure_step part of step configure
== 2016-08-10 19:44:57,544 easyblock.py:2126 DEBUG Not skipping build step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2016-08-10 19:44:57,544 build_log.py:227 INFO building...
== 2016-08-10 19:44:57,544 easyblock.py:2134 INFO Starting build step
== 2016-08-10 19:44:57,545 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,547 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,547 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,547 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,548 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,548 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,549 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,550 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,551 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,551 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,551 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,551 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,551 easyblock.py:2137 INFO Running method build_step part of step build
== 2016-08-10 19:44:57,552 easyblock.py:2126 DEBUG Not skipping test step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2016-08-10 19:44:57,552 build_log.py:227 INFO testing...
== 2016-08-10 19:44:57,552 easyblock.py:2134 INFO Starting test step
== 2016-08-10 19:44:57,553 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,555 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,555 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,555 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,555 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,555 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,556 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,558 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,558 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,558 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,559 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,559 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,559 easyblock.py:2137 INFO Running method test_step part of step test
== 2016-08-10 19:44:57,559 easyblock.py:2126 DEBUG Not skipping install step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2016-08-10 19:44:57,560 build_log.py:227 INFO installing...
== 2016-08-10 19:44:57,560 easyblock.py:2134 INFO Starting install step
== 2016-08-10 19:44:57,561 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,562 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,562 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,563 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,563 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,563 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,564 templates.py:149 DEBUG config: {'preinstallopts': ['', 'Extra prefix options for installation.', (3, 'build')], 'postinstallcmds': [['cp -r psort/* %(installdir)s/.'], 'Commands to run after the install step.', (3, 'build')], 'moduleloadnoconflict': [False, "Don't check for conflicts, unload other versions instead ", (8, 'modules')], 'skip': [False, 'Skip existing software', (3, 'build')], 'cleanupoldbuild': [True, 'Boolean to remove (True) or backup (False) the previous build directory with identical name or not.', (4, 'file-management')], 'installopts': ['', 'Extra options for installation', (3, 'build')], 'sources': [['bio-tools-psort-all.%(version)s.tar.gz'], 'List of source files', (3, 'build')], 'versionsuffix': ['-Perl-%(perlver)s', 'Additional suffix for software version (placed after toolchain name)', (3, 'build')], 'license_server': [None, 'License server for software', (6, 'license')], 'modaltsoftname': [None, 'Module name to use (rather than using software name', (8, 'modules')], 'keeppreviousinstall': [False, 'Boolean to keep the previous installation with identical name. Experts only!', (4, 'file-management')], 'hiddendependencies': [[], 'List of dependencies available as hidden modules', (5, 'dependencies')], 'checksums': [[], 'Checksums for sources and patches', (3, 'build')], 'keepsymlinks': [False, 'Boolean to determine whether symlinks are to be kept during copying or if the content of the files pointed to should be copied', (4, 'file-management')], 'cleanupoldinstall': [True, 'Boolean to remove (True) or backup (False) the previous install directory with identical name or not.', (4, 'file-management')], 'builddependencies': [[], 'List of build dependencies', (5, 'dependencies')], 'dontcreateinstalldir': [False, 'Boolean to create (False) or not create (True) the install directory', (4, 'file-management')], 'modextravars': [{}, 'Extra environment variables to be added to module file', (8, 'modules')], 'unpack_options': ['', 'Extra options for unpacking source', (3, 'build')], 'group': [None, 'Name of the user group for which the software should be available', (6, 'license')], 'versionprefix': ['', 'Additional prefix for software version (placed before version and toolchain name)', (3, 'build')], 'parsed': [True, 'This is a parsed easyconfig', 'HIDDEN'], 'prebuildopts': ['', 'Extra options pre-passed to build command.', (3, 'build')], 'easybuild_version': [None, 'EasyBuild-version this spec-file was written for', (3, 'build')], 'skipsteps': [[], 'Skip these steps', (3, 'build')], 'start_dir': ['/tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all/', 'Path to start the make in. If the path is absolute, use that path. If not, this is added to the guessed path.', (4, 'file-management')], 'version': ['3.0.4', 'Version of software', (0, 'mandatory')], 'exts_filter': [None, 'Extension filter details: template for cmd and input to cmd (templates for name, version and src).', (7, 'extensions')], 'modaliases': [{}, 'Aliases to be defined in module file', (8, 'modules')], 'allow_system_deps': [[], 'Allow listed system dependencies (format: (<name>, <version>))', (5, 'dependencies')], 'osdependencies': [[], 'OS dependencies that should be present on the system', (5, 'dependencies')], 'hidden': [False, "Install module file as 'hidden' by prefixing its version with '.'", (3, 'build')], 'modluafooter': ['', 'Footer to include in generated module file (Lua syntax)', (8, 'modules')], 'homepage': ['http://psort.org/psortb/index.html', 'The homepage of the software', (0, 'mandatory')], 'license_file': [None, 'License file for software', (6, 'license')], 'tests': [[], 'List of test-scripts to run after install. A test script should return a non-zero exit status to fail', (3, 'build')], 'buildopts': ['', 'Extra options passed to make step (default already has -j X)', (3, 'build')], 'description': ['PSORTb v3.0.4 is the most precise bacterial localization prediction tool available.', 'A short description of the software', (0, 'mandatory')], 'modextrapaths': [{}, 'Extra paths to be prepended in module file', (8, 'modules')], 'exts_list': [[], 'List with extensions added to the base installation', (7, 'extensions')], 'docurls': [None, 'List of urls with documentation of the software (not necessarily on homepage)', (0, 'mandatory')], 'stop': [None, 'Keyword to halt the build process after a certain step.', (3, 'build')], 'sanity_check_commands': [[], "format: [(name, options)] e.g. [('gzip','-h')]. Using a non-tuple is equivalent to (name, '-h')", (3, 'build')], 'exts_classmap': [{}, 'Map of extension name to class for handling build and installation.', (7, 'extensions')], 'moduleforceunload': [False, 'Force unload of all modules when loading the extension', (8, 'modules')], 'dependencies': [[{'external_module_metadata': {}, 'full_mod_name': 'Perl/5.22.1-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'Perl', 'dummy': False, 'short_mod_name': 'Perl/5.22.1-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '5.22.1', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'libpsortb/1.0-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'libpsortb', 'dummy': False, 'short_mod_name': 'libpsortb/1.0-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '1.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BioPerl', 'dummy': False, 'short_mod_name': 'BioPerl/1.6.924-foss-2016a-Perl-5.22.1', 'external_module': False, 'versionsuffix': '-Perl-5.22.1', 'version': '1.6.924', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'BLAST+', 'dummy': False, 'short_mod_name': 'BLAST+/2.3.0-foss-2016a-Python-2.7.11', 'external_module': False, 'versionsuffix': '-Python-2.7.11', 'version': '2.3.0', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}, {'external_module_metadata': {}, 'full_mod_name': 'pftoolsV3/20160324-foss-2016a', 'toolchain': {'version': '2016a', 'name': 'foss'}, 'name': 'pftoolsV3', 'dummy': False, 'short_mod_name': 'pftoolsV3/20160324-foss-2016a', 'external_module': False, 'versionsuffix': '', 'version': '20160324', 'toolchain_inherited': True, 'hidden': False, 'build_only': False}], 'List of dependencies', (5, 'dependencies')], 'moduleclass': ['bio', 'Module class to be used for this software', (8, 'modules')], 'key': [None, 'Key for installing software', (6, 'license')], 'include_modpath_extensions': [True, 'Include $MODULEPATH extensions specified by module naming scheme.', (8, 'modules')], 'modtclfooter': ['', 'Footer to include in generated module file (Tcl syntax)', (8, 'modules')], 'modloadmsg': [{}, 'Message that should be printed when generated module is loaded', (8, 'modules')], 'parallel': [16, 'Degree of parallelism for e.g. make (default: based on the number of cores, active cpuset and restrictions in ulimit)', (3, 'build')], 'buildininstalldir': [False, 'Boolean to build (True) or not build (False) in the installation directory', (4, 'file-management')], 'patches': [['PSORTb-%(version)s-libpsortb.patch'], 'List of patches to apply', (3, 'build')], 'sanity_check_paths': [{'files': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM.pm', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort.pm'], 'dirs': ['lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Algorithm/HMM', 'lib/perl5/site_perl/%(perlver)s/x86_64-linux-thread-multi/Bio/Tools/PSort']}, "List of files and directories to check (format: {'files':<list>, 'dirs':<list>})", (3, 'build')], 'runtest': ['test', 'Run unit tests.', (1, 'easyblock-specific')], 'onlytcmod': [False, 'Boolean/string to indicate if the toolchain should only load the environment with module (True) or also set all other variables (False) like compiler CC etc (if string: comma separated list of variables that will be ignored).', (2, 'toolchain')], 'buildstats': [None, 'A list of dicts with build statistics', (9, 'other')], 'unwanted_env_vars': [{}, "List of environment variables that shouldn't be set during build", (3, 'build')], 'name': ['PSORTb', 'Name of software', (0, 'mandatory')], 'recursive_module_unload': [False, 'Recursive unload of all dependencies when unloading module', (8, 'modules')], 'toolchain': [{'version': '2016a', 'name': 'foss'}, 'Name and version of toolchain', (0, 'mandatory')], 'preconfigopts': ['export PSORTROOT=%(installdir)s && ', 'Extra options pre-passed to configure.', (3, 'build')], 'maxparallel': [None, 'Max degree of parallelism', (3, 'build')], 'license_server_port': [None, 'Port for license server', (6, 'license')], 'exts_defaultclass': [None, 'List of module for and name of the default extension class', (7, 'extensions')], 'toolchainopts': [None, 'Extra options for compilers', (2, 'toolchain')], 'source_urls': [['http://www.psort.org/download/'], 'List of URLs for source files', (3, 'build')], 'easyblock': ['PerlModule', 'EasyBlock to use for building; if set to None, an easyblock is selected based on the software name', (3, 'build')], 'whatis': [None, 'List of brief (one line) package description entries', (8, 'modules')], 'software_license': [None, 'Software license', (0, 'mandatory')], 'options': [{'modulename': 'Bio::Tools::PSort'}, 'Dictionary with extension options.', (1, 'easyblock-specific')], 'configopts': ['', 'Extra options passed to configure (default already has --prefix)', (3, 'build')], 'software_license_urls': [None, 'List of software license locations', (0, 'mandatory')]}
== 2016-08-10 19:44:57,566 templates.py:173 DEBUG version found in easyconfig is 3.0.4
== 2016-08-10 19:44:57,566 templates.py:210 DEBUG name: name, config: PSORTb
== 2016-08-10 19:44:57,566 templates.py:210 DEBUG name: version, config: 3.0.4
== 2016-08-10 19:44:57,566 templates.py:210 DEBUG name: versionsuffix, config: -Perl-%(perlver)s
== 2016-08-10 19:44:57,566 templates.py:210 DEBUG name: versionprefix, config:
== 2016-08-10 19:44:57,567 easyblock.py:2137 INFO Running method stage_install_step part of step install
== 2016-08-10 19:44:57,567 easyblock.py:2137 INFO Running method make_installdir part of step install
== 2016-08-10 19:44:57,567 easyblock.py:793 DEBUG Creating the installation directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 (cleanup: True)
== 2016-08-10 19:44:57,569 easyblock.py:804 INFO Found old directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1
== 2016-08-10 19:44:57,569 filetools.py:1011 INFO Path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 successfully removed.
== 2016-08-10 19:44:57,570 easyblock.py:811 INFO Removed old directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1
== 2016-08-10 19:44:57,570 filetools.py:910 INFO Creating directory /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 (parents: True, set_gid: False, sticky: False)
== 2016-08-10 19:44:57,570 easyblock.py:2137 INFO Running method install_step part of step install
== 2016-08-10 19:44:57,571 run.py:99 DEBUG run_cmd: running cmd export PSORTROOT=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 &&  perl Makefile.PL PREFIX=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1  (in /tmp/vsc40023/easybuild_build/PSORTb/3.0.4/foss-2016a-Perl-5.22.1/bio-tools-psort-all)
== 2016-08-10 19:44:57,822 run.py:392 DEBUG cmd "export PSORTROOT=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 &&  perl Makefile.PL PREFIX=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 " exited with exitcode 2 and output:
External Module XML::RPC, XML Based RPC client, is not installed on this computer.
  The XML::RPC in PSortb needs it for making calls to remote PSortb servers, if you don't plan to do this, ignore this warning

We couldn't find blastall, please enter the path []
I'm sorry,  doesn't seem to contain blastall, we don't know where blastall is, aborting

== 2016-08-10 19:44:57,988 build_log.py:152 ERROR cmd "export PSORTROOT=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 &&  perl Makefile.PL PREFIX=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 " exited with exitcode 2 and output:
External Module XML::RPC, XML Based RPC client, is not installed on this computer.
  The XML::RPC in PSortb needs it for making calls to remote PSortb servers, if you don't plan to do this, ignore this warning

We couldn't find blastall, please enter the path []
I'm sorry,  doesn't seem to contain blastall, we don't know where blastall is, aborting
 (at easybuild/tools/run.py:397 in parse_cmd_output)
== 2016-08-10 19:44:57,989 easyblock.py:2366 WARNING build failed (first 300 chars): cmd "export PSORTROOT=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 &&  perl Makefile.PL PREFIX=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/SL6/sandybridge/software/PSORTb/3.0.4-foss-2016a-Perl-5.22.1 " exited with exitcode 2 and o
== 2016-08-10 19:44:57,989 easyblock.py:269 INFO Closing log for application name PSORTb version 3.0.4