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boegel/HPL-2.2-foss-2017a_partial.log

Created January 4, 2017 16:14
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(partial) EasyBuild log for failed build of /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL-2.2-foss-2017a.eb (PR #3968)
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HPL-2.2-foss-2017a_partial.log
== 2017-01-04 17:14:05,079 easyblock.py:261 INFO This is EasyBuild 3.0.2 (framework: 3.0.2, easyblocks: 3.0.2) on host node2519.golett.os.
== 2017-01-04 17:14:05,079 easyblock.py:267 INFO This is easyblock EB_HPL from module easybuild.easyblocks.hpl (/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyblocks/h/hpl.pyo)
== 2017-01-04 17:14:05,079 easyblock.py:753 INFO Build dir set to /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a
== 2017-01-04 17:14:05,079 config.py:423 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software
== 2017-01-04 17:14:05,080 easyconfig.py:1650 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,080 easyconfig.py:1656 DEBUG Obtained subdir HPL/2.2-foss-2017a
== 2017-01-04 17:14:05,080 easyblock.py:792 INFO Software install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/HPL/2.2-foss-2017a
== 2017-01-04 17:14:05,080 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules
== 2017-01-04 17:14:05,080 easyblock.py:797 INFO Module install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all
== 2017-01-04 17:14:05,080 easyblock.py:246 INFO Init completed for application name HPL version 2.2
== 2017-01-04 17:14:05,080 easyblock.py:2477 INFO Obtained application instance of for HPL (easyblock: None)
== 2017-01-04 17:14:05,080 easyblock.py:2490 DEBUG Skip set to False
== 2017-01-04 17:14:05,081 build_log.py:216 INFO building and installing HPL/2.2-foss-2017a...
== 2017-01-04 17:14:05,081 easyblock.py:2263 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 17:14:05,081 build_log.py:216 INFO fetching files...
== 2017-01-04 17:14:05,081 easyblock.py:2271 INFO Starting fetch step
== 2017-01-04 17:14:05,081 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,081 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,081 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,082 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,082 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,082 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,082 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,082 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,082 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,082 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,082 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,083 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,083 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,083 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,083 easyblock.py:2274 INFO Running method fetch_step part of step fetch
== 2017-01-04 17:14:05,083 easyblock.py:1446 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version
== 2017-01-04 17:14:05,083 filetools.py:237 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb
== 2017-01-04 17:14:05,083 tools.py:261 DEBUG Also considering installation prefix /user/data/gent/vsc400/vsc40023/easybuild_easy_installed...
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-B3gTBZ/files_pr3968/easybuild/easyconfigs
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.5-py2.7.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_install-0.10.20-py2.7.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.0.2.dev0-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,084 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,085 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,085 tools.py:270 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2017-01-04 17:14:05,085 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/MySQLdb/1.2.5-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/MySQL_python-1.2.5-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,085 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/psutil/3.4.2-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/psutil-3.4.2-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,085 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs
== 2017-01-04 17:14:05,085 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,085 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,086 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/pbs/easybuild/easyconfigs
== 2017-01-04 17:14:05,087 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,087 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2017-01-04 17:14:05,087 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
== 2017-01-04 17:14:05,088 easyblock.py:590 INFO Found file hpl-2.2.tar.gz at /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz
== 2017-01-04 17:14:05,088 easyblock.py:338 DEBUG File /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz found for source hpl-2.2.tar.gz
== 2017-01-04 17:14:05,088 easyblock.py:350 INFO Added sources: [{'path': '/user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a', 'name': 'hpl-2.2.tar.gz', 'checksum': None}]
== 2017-01-04 17:14:05,088 filetools.py:237 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb
== 2017-01-04 17:14:05,089 tools.py:261 DEBUG Also considering installation prefix /user/data/gent/vsc400/vsc40023/easybuild_easy_installed...
== 2017-01-04 17:14:05,089 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs
== 2017-01-04 17:14:05,089 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-B3gTBZ/files_pr3968/easybuild/easyconfigs
== 2017-01-04 17:14:05,089 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs
== 2017-01-04 17:14:05,089 tools.py:266 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs
== 2017-01-04 17:14:05,089 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.5-py2.7.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,089 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_install-0.10.20-py2.7.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,090 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.0.2.dev0-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,090 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,090 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,090 tools.py:270 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs
== 2017-01-04 17:14:05,090 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/MySQLdb/1.2.5-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/MySQL_python-1.2.5-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,090 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/psutil/3.4.2-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/psutil-3.4.2-py2.7-linux-x86_64.egg/easybuild/easyconfigs
== 2017-01-04 17:14:05,090 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs
== 2017-01-04 17:14:05,091 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,091 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,091 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs
== 2017-01-04 17:14:05,091 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs
== 2017-01-04 17:14:05,091 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs
== 2017-01-04 17:14:05,091 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs
== 2017-01-04 17:14:05,091 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/pbs/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs
== 2017-01-04 17:14:05,092 easyblock.py:590 INFO Found file HPL_parallel-make.patch at /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch
== 2017-01-04 17:14:05,093 easyblock.py:390 DEBUG File /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch found for patch HPL_parallel-make.patch
== 2017-01-04 17:14:05,093 easyblock.py:415 INFO Added patches: [{'path': '/tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch', 'name': 'HPL_parallel-make.patch', 'checksum': None}]
== 2017-01-04 17:14:05,093 filetools.py:514 DEBUG Using blocksize 16777216 for calculating the checksum
== 2017-01-04 17:14:05,096 easyblock.py:1496 INFO md5 checksum for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz: 0eb19e787c3dc8f4058db22c9e0c5320
== 2017-01-04 17:14:05,096 filetools.py:514 DEBUG Using blocksize 16777216 for calculating the checksum
== 2017-01-04 17:14:05,096 easyblock.py:1496 INFO md5 checksum for /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch: 1ea6a64ba93676bbfe0b8f1f2cba02a7
== 2017-01-04 17:14:05,096 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules
== 2017-01-04 17:14:05,096 easyblock.py:1513 INFO Checking dirs that need to be created: ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/HPL/2.2-foss-2017a', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/HPL', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/tools/HPL']
== 2017-01-04 17:14:05,098 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/HPL/2.2-foss-2017a
== 2017-01-04 17:14:05,098 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/HPL
== 2017-01-04 17:14:05,099 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/tools/HPL
== 2017-01-04 17:14:05,099 easyblock.py:2263 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 17:14:05,100 build_log.py:216 INFO creating build dir, resetting environment...
== 2017-01-04 17:14:05,100 easyblock.py:2271 INFO Starting ready step
== 2017-01-04 17:14:05,100 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,100 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,100 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,100 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,100 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,100 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,101 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,101 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,101 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,101 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,101 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,101 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,101 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,101 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,102 easyblock.py:2274 INFO Running method check_readiness_step part of step ready
== 2017-01-04 17:14:05,102 easyblock.py:1401 DEBUG Desired parallelism specified via 'parallel' build option: None
== 2017-01-04 17:14:05,102 affinity.py:209 DEBUG sched_getaffinity for pid 13867 returned cpuset 0-23
== 2017-01-04 17:14:05,102 run.py:86 DEBUG Using cached value for command 'ulimit -u': ('4096\n', 0)
== 2017-01-04 17:14:05,103 easyblock.py:1404 INFO Setting parallelism: 24
== 2017-01-04 17:14:05,103 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 17:14:05,103 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2017-01-04 17:14:05,103 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2017-01-04 17:14:05,103 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /tmp/eb-B3gTBZ/tmpVJdC8l/hpcugent
== 2017-01-04 17:14:05,135 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr: cluster/golett
== 2017-01-04 17:14:05,135 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine
== 2017-01-04 17:14:05,136 modules.py:682 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to []
== 2017-01-04 17:14:05,136 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '')
== 2017-01-04 17:14:05,136 modules.py:682 DEBUG Correcting paths in $LD_PRELOAD from [''] to []
== 2017-01-04 17:14:05,136 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '')
== 2017-01-04 17:14:05,136 easyblock.py:1409 WARNING Loaded modules detected: ['cluster/golett']
== 2017-01-04 17:14:05,137 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: []
== 2017-01-04 17:14:05,137 toolchain.py:375 DEBUG add_dependencies: adding toolchain dependencies []
== 2017-01-04 17:14:05,137 modules.py:418 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'lmod', '--show-hidden')': ['3to2/1.1.1-intel-2016b-Python-2.7.12', 'ABINIT/8.0.8b-intel-2016b', 'ART/2016.06.05-intel-2016b', 'ASE/3.11.0-intel-2016b-Python-2.7.12', 'ATK/2.22.0-intel-2016b', 'Autoconf/2.69-foss-2016b', 'Autoconf/2.69-foss-2017a', 'Autoconf/2.69-intel-2016b', 'Automake/1.15-foss-2016b', 'Automake/1.15-foss-2017a', 'Automake/1.15-intel-2016b', 'Autotools/20150215-foss-2016b', 'Autotools/20150215-foss-2017a', 'Autotools/20150215-intel-2016b', 'BBMap/36.62-intel-2016b-Java-1.8.0_112', 'BEDTools/2.26.0-intel-2016b', 'BWA/0.7.15-intel-2016b', 'BamTools/2.4.0-foss-2016b', 'BamUtil/1.0.13-intel-2016b', 'BioPerl/1.7.0-foss-2016b-Perl-5.24.0', 'Biopython/1.68-foss-2016b-Python-2.7.12', 'Biopython/1.68-intel-2016b-Python-2.7.12', 'Biopython/1.68-intel-2016b-Python-3.5.2', 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== 2017-01-04 17:14:05,138 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: []
== 2017-01-04 17:14:05,138 easyblock.py:2274 INFO Running method make_builddir part of step ready
== 2017-01-04 17:14:05,138 easyblock.py:763 DEBUG Creating the build directory /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a (cleanup: True)
== 2017-01-04 17:14:05,138 easyblock.py:817 INFO Found old directory /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a
== 2017-01-04 17:14:05,149 filetools.py:1072 INFO Path /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a successfully removed.
== 2017-01-04 17:14:05,149 easyblock.py:824 INFO Removed old directory /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a
== 2017-01-04 17:14:05,149 filetools.py:967 INFO Creating directory /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a (parents: True, set_gid: False, sticky: False)
== 2017-01-04 17:14:05,149 easyblock.py:2274 INFO Running method env_reset_changes part of step ready
== 2017-01-04 17:14:05,150 easyblock.py:2274 INFO Running method handle_iterate_opts part of step ready
== 2017-01-04 17:14:05,150 easyblock.py:2263 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 17:14:05,150 build_log.py:216 INFO unpacking...
== 2017-01-04 17:14:05,150 easyblock.py:2271 INFO Starting source step
== 2017-01-04 17:14:05,150 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,150 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,150 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,151 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,151 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,151 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,151 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,151 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,151 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,151 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,151 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,151 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,152 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,152 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,152 easyblock.py:2274 INFO Running method checksum_step part of step source
== 2017-01-04 17:14:05,152 easyblock.py:1529 INFO Checksum verification for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz using None passed.
== 2017-01-04 17:14:05,152 easyblock.py:1529 INFO Checksum verification for /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch using None passed.
== 2017-01-04 17:14:05,152 easyblock.py:2274 INFO Running method extract_step part of step source
== 2017-01-04 17:14:05,152 easyblock.py:1536 INFO Unpacking source hpl-2.2.tar.gz
== 2017-01-04 17:14:05,152 filetools.py:995 DEBUG Not creating existing path /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a
== 2017-01-04 17:14:05,153 filetools.py:201 DEBUG Unpacking /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz in directory /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a.
== 2017-01-04 17:14:05,153 run.py:137 DEBUG run_cmd: running cmd tar xzf /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz (in /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a)
== 2017-01-04 17:14:05,175 run.py:433 DEBUG cmd "tar xzf /user/data/gent/vsc400/vsc40023/EasyBuild/sources/h/HPL/hpl-2.2.tar.gz" exited with exitcode 0 and output:
== 2017-01-04 17:14:05,176 run.py:477 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2017-01-04 17:14:05,176 filetools.py:595 DEBUG Last dir list ['BUGS', 'HISTORY', 'include', 'README', 'Make.top', 'makes', 'setup', 'TODO', 'www', 'testing', 'TUNING', 'src', 'COPYRIGHT', 'INSTALL', 'Makefile', 'hpl', 'man']
== 2017-01-04 17:14:05,176 filetools.py:596 DEBUG Possible new dir /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a/hpl-2.2 found
== 2017-01-04 17:14:05,176 easyblock.py:2263 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 17:14:05,176 build_log.py:216 INFO patching...
== 2017-01-04 17:14:05,176 easyblock.py:2271 INFO Starting patch step
== 2017-01-04 17:14:05,177 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,177 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,177 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,177 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,177 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,177 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,177 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,177 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,178 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,178 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,178 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,178 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,178 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,178 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,178 easyblock.py:2274 INFO Running method patch_step part of step patch
== 2017-01-04 17:14:05,178 easyblock.py:1548 INFO Applying patch HPL_parallel-make.patch
== 2017-01-04 17:14:05,178 easyblock.py:1560 DEBUG Source index: 0; patch level: None; source path suffix: ; copy patch: <module 'copy' from '/usr/lib64/python2.7/copy.pyo'>
== 2017-01-04 17:14:05,179 easyblock.py:1565 DEBUG Determine begin path for patch HPL_parallel-make.patch: /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a/hpl-2.2
== 2017-01-04 17:14:05,179 easyblock.py:1574 DEBUG Applying patch {'path': '/tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch', 'md5': '1ea6a64ba93676bbfe0b8f1f2cba02a7', 'name': 'HPL_parallel-make.patch', 'checksum': None} in path /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a/hpl-2.2
== 2017-01-04 17:14:05,179 filetools.py:772 DEBUG Guessed patch level 0 for patch /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch
== 2017-01-04 17:14:05,179 run.py:137 DEBUG run_cmd: running cmd patch -b -p0 -i /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch (in /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a/hpl-2.2)
== 2017-01-04 17:14:05,184 run.py:433 DEBUG cmd "patch -b -p0 -i /tmp/eb-B3gTBZ/files_pr3968/h/HPL/HPL_parallel-make.patch" exited with exitcode 0 and output:
patching file Makefile
== 2017-01-04 17:14:05,184 run.py:477 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2017-01-04 17:14:05,184 easyblock.py:2263 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True
== 2017-01-04 17:14:05,185 build_log.py:216 INFO preparing...
== 2017-01-04 17:14:05,185 easyblock.py:2271 INFO Starting prepare step
== 2017-01-04 17:14:05,185 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,185 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,185 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,185 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,185 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,185 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,186 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,186 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x1367cd0>
== 2017-01-04 17:14:05,186 templates.py:175 DEBUG version found in easyconfig is 2.2
== 2017-01-04 17:14:05,186 templates.py:219 DEBUG name: github_account, config: None
== 2017-01-04 17:14:05,186 templates.py:219 DEBUG name: name, config: HPL
== 2017-01-04 17:14:05,186 templates.py:219 DEBUG name: version, config: 2.2
== 2017-01-04 17:14:05,186 templates.py:219 DEBUG name: versionsuffix, config:
== 2017-01-04 17:14:05,186 templates.py:219 DEBUG name: versionprefix, config:
== 2017-01-04 17:14:05,187 easyblock.py:2274 INFO Running method prepare_step part of step prepare
== 2017-01-04 17:14:05,187 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 17:14:05,187 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2017-01-04 17:14:05,187 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2017-01-04 17:14:05,187 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show foss/2017a' from /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a/hpl-2.2
== 2017-01-04 17:14:05,319 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show foss/2017a': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["_ModuleTable001_"] = "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";
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
; stderr: ----------------------------------------------------------------------------
/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.lua:
----------------------------------------------------------------------------
help([[GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - Homepage: (none)]])
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - Homepage: (none)")
conflict("foss")
load("GCC/6.3.0-2.27")
load("OpenMPI/2.0.1-GCC-6.3.0-2.27")
load("OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1")
load("FFTW/3.3.5-gompi-2017a")
load("ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1")
setenv("EBROOTFOSS","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/foss/2017a")
setenv("EBVERSIONFOSS","2017a")
setenv("EBDEVELFOSS","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/foss/2017a/easybuild/foss-2017a-easybuild-devel")
== 2017-01-04 17:14:05,319 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python show foss/2017a' ran fine
== 2017-01-04 17:14:05,319 modules.py:539 DEBUG Cached result for 'module show foss/2017a' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'foss/2017a')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJhY3RpdmVTaXplIl09MSxiYXNlTXBhdGhBPXsiL3VzZXIvaG9tZS9nZW50L3ZzYzQwMC92c2M0MDAyMy9lYl9waGFucHlzY3JhdGNoL0NPNy9oYXN3ZWxsLWliL21vZHVsZXMvYWxsIiwiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLH0sWyJjX3JlYnVpbGRUaW1lIl09ODY0MDAsWyJjX3Nob3J0VGltZSJdPWZhbHNlLGZhbWlseT17WyJjbHVzdGVyIl09ImNsdXN0ZXIiLH0saW5hY3RpdmU9e30sbVQ9e2NsdXN0ZXI9e1siRk4iXT0iL2V0Yy9tb2R1bGVmaWxlcy92c2MvY2x1c3Rlci9nb2xldHQubHVhIixbImRlZmF1bHQiXT0wLFsiZnVsbE5hbWUiXT0iY2x1c3Rlci9nb2xldHQiLFsibG9hZE9yZGVyIl09MSxwcm9wVD17bG1vZD17WyJzdGlja3kiXT0x";
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0=";
os.environ["_ModuleTable_Sz_"] = "2";
----------------------------------------------------------------------------
/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.lua:
----------------------------------------------------------------------------
help([[GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - Homepage: (none)]])
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including
OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. - Homepage: (none)")
conflict("foss")
load("GCC/6.3.0-2.27")
load("OpenMPI/2.0.1-GCC-6.3.0-2.27")
load("OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1")
load("FFTW/3.3.5-gompi-2017a")
load("ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1")
setenv("EBROOTFOSS","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/foss/2017a")
setenv("EBVERSIONFOSS","2017a")
setenv("EBDEVELFOSS","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/foss/2017a/easybuild/foss-2017a-easybuild-devel")
== 2017-01-04 17:14:05,320 toolchain.py:561 DEBUG Loading toolchain module and dependencies...
== 2017-01-04 17:14:05,320 toolchain.py:494 DEBUG Loading module for toolchain: foss/2017a
== 2017-01-04 17:14:05,320 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc
== 2017-01-04 17:14:05,320 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command
== 2017-01-04 17:14:05,320 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command
== 2017-01-04 17:14:05,320 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python load foss/2017a' from /tmp/vsc40023/easybuild_build/HPL/2.2/foss-2017a/hpl-2.2
== 2017-01-04 17:14:14,091 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python load foss/2017a': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
false
; stderr: Lmod has detected the following error: The following module(s) are unknown:
"GCC/6.3.0-2.27" "numactl/2.0.11-GCC-6.3.0-2.27"
"OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1" "FFTW/3.3.5-gompi-2017a"
Please check the spelling or version number. Also try "module spider ..."
Executing this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "numactl/2.0.11-GCC-6.3.0-2.27" which
failed while processing the following module(s):
Module fullname Module Filename
--------------- ---------------
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading
"OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1" which failed while processing the
following module(s):
Module fullname Module Filename
--------------- ---------------
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "FFTW/3.3.5-gompi-2017a" which failed
while processing the following module(s):
Module fullname Module Filename
--------------- ---------------
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.lua
ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading
"OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1" which failed while processing the
following module(s):
Module fullname Module Filename
--------------- ---------------
ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.lua
If you don't understand the warning or error, contact the helpdesk at hpc@ugent.be
== 2017-01-04 17:14:14,092 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load foss/2017a' ran fine
== 2017-01-04 17:14:14,095 build_log.py:147 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Changing environment as dictated by module failed: name 'false' is not defined (stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
false
, stderr: Lmod has detected the following error: The following module(s) are unknown:
"GCC/6.3.0-2.27" "numactl/2.0.11-GCC-6.3.0-2.27"
"OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1" "FFTW/3.3.5-gompi-2017a"
Please check the spelling or version number. Also try "module spider ..."
Executing this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "numactl/2.0.11-GCC-6.3.0-2.27" which
failed while processing the following module(s):
Module fullname Module Filename
--------------- ---------------
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading
"OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1" which failed while processing the
following module(s):
Module fullname Module Filename
--------------- ---------------
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "FFTW/3.3.5-gompi-2017a" which failed
while processing the following module(s):
Module fullname Module Filename
--------------- ---------------
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while
processing the following module(s):
Module fullname Module Filename
--------------- ---------------
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.lua
ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.luaExecuting this command requires loading
"OpenBLAS/0.2.19-GCC-6.3.0-2.27-LAPACK-3.6.1" which failed while processing the
following module(s):
Module fullname Module Filename
--------------- ---------------
ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/ScaLAPACK/2.0.2-gompi-2017a-OpenBLAS-0.2.19-LAPACK-3.6.1.lua
foss/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/foss/2017a.lua
If you don't understand the warning or error, contact the helpdesk at hpc@ugent.be
) (at easybuild/tools/modules.py:674 in run_module)
== 2017-01-04 17:14:14,095 easyblock.py:2503 WARNING build failed (first 300 chars): Changing environment as dictated by module failed: name 'false' is not defined (stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc";
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscr
== 2017-01-04 17:14:14,096 easyblock.py:276 INFO Closing log for application name HPL version 2.2
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