Created
October 21, 2020 08:52
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(partial) EasyBuild log for failed build of /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL-2.3-foss-2020b.eb (PR #11489)
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| == 2020-10-21 10:52:26,963 easyblock.py:280 INFO This is EasyBuild 4.3.0 (framework: 4.3.0, easyblocks: 4.3.0) on host b-cn1203.hpc2n.umu.se. | |
| == 2020-10-21 10:52:26,964 easyblock.py:286 INFO This is easyblock EB_HPL from module easybuild.easyblocks.hpl (/scratch/lvtmp/eb-G73FTh/included-easyblocks-58Kjdg/easybuild/easyblocks/hpl.pyo) | |
| == 2020-10-21 10:52:26,965 easyblock.py:894 INFO Build dir set to /scratch/eb-lars/HPL/2.3/foss-2020b | |
| == 2020-10-21 10:52:26,966 config.py:576 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/l/lars/Public/easybuild/software | |
| == 2020-10-21 10:52:26,967 easyconfig.py:2533 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:26,969 toolchain.py:584 DEBUG Toolchain definition for {'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
| == 2020-10-21 10:52:26,970 toolchain.py:59 DEBUG Obtained details for 'GCC' in toolchain '{'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}' from cache | |
| == 2020-10-21 10:52:26,971 toolchain.py:134 DEBUG Found compilers [{'external_module_metadata': {}, 'short_mod_name': 'GCC/10.2.0', 'toolchain': {'version': 'system', 'name': 'system'}, 'name': 'GCC', 'full_mod_name': 'Core/GCC/10.2.0', 'system': True, 'build_only': False, 'versionsuffix': '', 'version': '10.2.0', 'toolchain_inherited': True, 'hidden': False, 'external_module': False}] for toolchain foss ({'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}) | |
| == 2020-10-21 10:52:26,972 toolchain.py:584 DEBUG Toolchain definition for {'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
| == 2020-10-21 10:52:26,973 toolchain.py:59 DEBUG Obtained details for 'OpenMPI' in toolchain '{'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}' from cache | |
| == 2020-10-21 10:52:26,974 easyconfig.py:2539 DEBUG Obtained subdir MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3 | |
| == 2020-10-21 10:52:26,975 easyblock.py:954 INFO Software install dir set to /home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3 | |
| == 2020-10-21 10:52:26,975 config.py:576 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /home/l/lars/Public/easybuild/modules | |
| == 2020-10-21 10:52:26,976 easyblock.py:959 INFO Module install dir set to /home/l/lars/Public/easybuild/modules/all | |
| == 2020-10-21 10:52:26,977 easyblock.py:265 INFO Init completed for application name HPL version 2.3 | |
| == 2020-10-21 10:52:26,977 easyblock.py:3273 INFO Obtained application instance of for HPL (easyblock: None) | |
| == 2020-10-21 10:52:26,978 easyblock.py:3286 DEBUG Skip set to False | |
| == 2020-10-21 10:52:26,979 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-21 10:52:26,980 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:26,981 templates.py:191 DEBUG version found in easyconfig is 2.3 | |
| == 2020-10-21 10:52:26,982 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-21 10:52:26,982 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-21 10:52:26,983 templates.py:276 DEBUG name: name, config: HPL | |
| == 2020-10-21 10:52:26,983 templates.py:276 DEBUG name: parallel, config: None | |
| == 2020-10-21 10:52:26,984 templates.py:276 DEBUG name: version, config: 2.3 | |
| == 2020-10-21 10:52:26,984 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-21 10:52:26,985 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-21 10:52:26,986 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-21 10:52:26,986 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-21 10:52:26,987 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hpl', github_account='hpl', mpi_cmd_prefix='mpirun -n 1', name='HPL', nameletter='H', nameletterlower='h', namelower='hpl', toolchain_name='foss', toolchain_version='2020b', version='2.3', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-21 10:52:26,989 one.py:159 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2020-10-21 10:52:26,990 one.py:159 INFO Skipping reformatting value for parameter 'toolchainopts' | |
| == 2020-10-21 10:52:26,995 easyconfig.py:1183 DEBUG Dumped easyconfig: name = 'HPL' | |
| version = '2.3' | |
| homepage = 'https://www.netlib.org/benchmark/hpl/' | |
| description = """HPL is a software package that solves a (random) dense linear system in double precision (64 bits) | |
| arithmetic on distributed-memory computers. It can thus be regarded as a portable as well as freely available | |
| implementation of the High Performance Computing Linpack Benchmark.""" | |
| toolchain = {'name': 'foss', 'version': '2020b'} | |
| toolchainopts = {'usempi': True} | |
| source_urls = ['https://www.netlib.org/benchmark/%(namelower)s'] | |
| sources = [SOURCELOWER_TAR_GZ] | |
| # fix Make dependencies, so parallel build also works | |
| patches = ['HPL_parallel-make.patch'] | |
| checksums = [ | |
| '32c5c17d22330e6f2337b681aded51637fb6008d3f0eb7c277b163fadd612830', # %(namelower)s-%(version)s.tar.gz | |
| '2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6', # HPL_parallel-make.patch | |
| ] | |
| moduleclass = 'tools' | |
| == 2020-10-21 10:52:26,996 filetools.py:1500 INFO Creating directory /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257 (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-21 10:52:26,998 easyblock.py:3476 INFO Dumped easyconfig instance to /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/HPL-2.3-foss-2020b.eb | |
| == 2020-10-21 10:52:27,001 filetools.py:1500 INFO Creating directory /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-21 10:52:27,006 filetools.py:2019 INFO /hpc2n/eb/software/Core/EasyBuild/4.3.0/lib/python2.7/site-packages/easybuild/easyblocks/generic/configuremake.py copied to /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/easyblocks/configuremake.py | |
| == 2020-10-21 10:52:27,007 easyblock.py:3456 INFO Dumped easyblock configuremake.py required for reproduction to /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/easyblocks | |
| == 2020-10-21 10:52:27,008 filetools.py:1528 DEBUG Not creating existing path /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/easyblocks | |
| == 2020-10-21 10:52:27,012 filetools.py:2019 INFO /scratch/lvtmp/eb-G73FTh/included-easyblocks-58Kjdg/easybuild/easyblocks/hpl.py copied to /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/easyblocks/hpl.py | |
| == 2020-10-21 10:52:27,013 easyblock.py:3456 INFO Dumped easyblock hpl.py required for reproduction to /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/easyblocks | |
| == 2020-10-21 10:52:27,014 filetools.py:1500 INFO Creating directory /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-21 10:52:27,018 filetools.py:2019 INFO /hpc2n/eb/custom/easyhooks/hpc2n_hooks.py copied to /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/hooks/hpc2n_hooks.py | |
| == 2020-10-21 10:52:27,019 easyblock.py:3488 INFO Dumped hooks file /hpc2n/eb/custom/easyhooks/hpc2n_hooks.py which is (potentially) required for reproduction to /scratch/lvtmp/eb-G73FTh/reprod_20201021105226_87257/hooks/hpc2n_hooks.py | |
| == 2020-10-21 10:52:27,019 easyblock.py:1691 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2020-10-21 10:52:27,020 build_log.py:265 INFO building and installing MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3... | |
| == 2020-10-21 10:52:27,021 config.py:576 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/l/lars/Public/easybuild/software | |
| == 2020-10-21 10:52:27,022 filetools.py:1602 INFO Lock /home/l/lars/Public/easybuild/software/.locks/_home_l_lars_Public_easybuild_software_MPI_GCC_10.2.0_OpenMPI_4.0.5_HPL_2.3.lock does not exist | |
| == 2020-10-21 10:52:27,022 config.py:576 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/l/lars/Public/easybuild/software | |
| == 2020-10-21 10:52:27,023 filetools.py:1543 INFO Creating lock at /home/l/lars/Public/easybuild/software/.locks/_home_l_lars_Public_easybuild_software_MPI_GCC_10.2.0_OpenMPI_4.0.5_HPL_2.3.lock... | |
| == 2020-10-21 10:52:27,024 filetools.py:1500 INFO Creating directory /home/l/lars/Public/easybuild/software/.locks/_home_l_lars_Public_easybuild_software_MPI_GCC_10.2.0_OpenMPI_4.0.5_HPL_2.3.lock (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-21 10:52:27,026 filetools.py:1552 INFO Lock created: /home/l/lars/Public/easybuild/software/.locks/_home_l_lars_Public_easybuild_software_MPI_GCC_10.2.0_OpenMPI_4.0.5_HPL_2.3.lock | |
| == 2020-10-21 10:52:27,027 easyblock.py:3025 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2020-10-21 10:52:27,028 build_log.py:265 INFO fetching files... | |
| == 2020-10-21 10:52:27,028 easyblock.py:3033 INFO Starting fetch step | |
| == 2020-10-21 10:52:27,029 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-21 10:52:27,029 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:27,030 templates.py:191 DEBUG version found in easyconfig is 2.3 | |
| == 2020-10-21 10:52:27,030 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,031 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,032 templates.py:276 DEBUG name: name, config: HPL | |
| == 2020-10-21 10:52:27,032 templates.py:276 DEBUG name: parallel, config: None | |
| == 2020-10-21 10:52:27,033 templates.py:276 DEBUG name: version, config: 2.3 | |
| == 2020-10-21 10:52:27,033 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-21 10:52:27,033 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-21 10:52:27,034 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-21 10:52:27,034 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-21 10:52:27,035 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hpl', builddir='/scratch/eb-lars/HPL/2.3/foss-2020b', github_account='hpl', installdir='/home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3', mpi_cmd_prefix='mpirun -n 1', name='HPL', nameletter='H', nameletterlower='h', namelower='hpl', toolchain_name='foss', toolchain_version='2020b', version='2.3', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-21 10:52:27,036 easyblock.py:3039 INFO Running method fetch_step part of step fetch | |
| == 2020-10-21 10:52:27,037 easyblock.py:1800 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2020-10-21 10:52:27,038 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /hpc2n/eb/software/Core/EasyBuild/4.3.0/bin/eb | |
| == 2020-10-21 10:52:27,039 tools.py:280 INFO Also considering installation prefix /hpc2n/eb/software/Core/EasyBuild/4.3.0 (determined via path to 'eb' script)... | |
| == 2020-10-21 10:52:27,040 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /home/l/lars/robots/openblas/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,041 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /pfs/nobackup/home/l/lars/repos/easybuild_common/custom/easyconfigs/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,088 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/custom/easyconfigs/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,090 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/ebfiles_repo/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,091 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/software/Core/EasyBuild/4.3.0/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,093 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/eb-G73FTh/files_pr11489/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,094 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/eb-G73FTh/fake_vsc_N0CiOR/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,094 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/included-easyblocks-mUT515/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,095 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/eb-G73FTh/included-easyblocks-58Kjdg/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,095 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/git/ext/gitdb/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,096 tools.py:295 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,096 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/software/Core/EasyBuild/4.3.0/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,097 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,098 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/plat-x86_64-linux-gnu/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,098 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-tk/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,099 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-old/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,099 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-dynload/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,100 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python2.7/dist-packages/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,100 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,100 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/gtk-2.0/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,101 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,101 tools.py:295 DEBUG Checking for easybuild/easyconfigs at ../easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,102 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/graphviz/python/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,102 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/graphviz/python/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,103 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/software/Core/EasyBuild/4.3.0/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,104 tools.py:299 DEBUG Added /hpc2n/eb/software/Core/EasyBuild/4.3.0/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,156 easyblock.py:722 INFO Found file hpl-2.3.tar.gz at /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz | |
| == 2020-10-21 10:52:27,161 easyblock.py:384 DEBUG File /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz found for source hpl-2.3.tar.gz | |
| == 2020-10-21 10:52:27,162 easyblock.py:427 INFO Added sources: [{'path': '/pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz', 'cmd': None, 'finalpath': '/scratch/eb-lars/HPL/2.3/foss-2020b', 'name': 'hpl-2.3.tar.gz', 'checksum': '32c5c17d22330e6f2337b681aded51637fb6008d3f0eb7c277b163fadd612830'}] | |
| == 2020-10-21 10:52:27,163 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /hpc2n/eb/software/Core/EasyBuild/4.3.0/bin/eb | |
| == 2020-10-21 10:52:27,164 tools.py:280 INFO Also considering installation prefix /hpc2n/eb/software/Core/EasyBuild/4.3.0 (determined via path to 'eb' script)... | |
| == 2020-10-21 10:52:27,165 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /home/l/lars/robots/openblas/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,165 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /pfs/nobackup/home/l/lars/repos/easybuild_common/custom/easyconfigs/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,166 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/custom/easyconfigs/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,167 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/ebfiles_repo/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,168 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/software/Core/EasyBuild/4.3.0/easybuild/easyconfigs/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,169 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/eb-G73FTh/files_pr11489/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,170 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/eb-G73FTh/fake_vsc_N0CiOR/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,170 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/included-easyblocks-mUT515/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,171 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /scratch/lvtmp/eb-G73FTh/included-easyblocks-58Kjdg/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,171 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/git/ext/gitdb/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,172 tools.py:295 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,172 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/software/Core/EasyBuild/4.3.0/lib/python2.7/site-packages/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,173 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,173 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/plat-x86_64-linux-gnu/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,174 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-tk/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,174 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-old/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,175 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/lib-dynload/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,175 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/local/lib/python2.7/dist-packages/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,176 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,176 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/gtk-2.0/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,177 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/dist-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,177 tools.py:295 DEBUG Checking for easybuild/easyconfigs at ../easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,178 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib/graphviz/python/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,178 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/graphviz/python/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,179 tools.py:295 DEBUG Checking for easybuild/easyconfigs at /hpc2n/eb/software/Core/EasyBuild/4.3.0/easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,180 tools.py:299 DEBUG Added /hpc2n/eb/software/Core/EasyBuild/4.3.0/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
| == 2020-10-21 10:52:27,181 easyblock.py:722 INFO Found file HPL_parallel-make.patch at /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch | |
| == 2020-10-21 10:52:27,181 easyblock.py:468 DEBUG File /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch found for patch HPL_parallel-make.patch | |
| == 2020-10-21 10:52:27,182 easyblock.py:493 INFO Added patches: [{'path': '/scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch', 'name': 'HPL_parallel-make.patch', 'checksum': '2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6'}] | |
| == 2020-10-21 10:52:27,182 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-21 10:52:27,233 easyblock.py:1851 INFO md5 checksum for /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz: 2789bbadd6d75ae0d64d9b9f2fa8a136 | |
| == 2020-10-21 10:52:27,233 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-21 10:52:27,245 easyblock.py:1851 INFO sha256 checksum for /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz: 32c5c17d22330e6f2337b681aded51637fb6008d3f0eb7c277b163fadd612830 | |
| == 2020-10-21 10:52:27,246 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-21 10:52:27,247 easyblock.py:1851 INFO md5 checksum for /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch: 1ea6a64ba93676bbfe0b8f1f2cba02a7 | |
| == 2020-10-21 10:52:27,247 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-21 10:52:27,248 easyblock.py:1851 INFO sha256 checksum for /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch: 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6 | |
| == 2020-10-21 10:52:27,249 easyconfig.py:2520 DEBUG Determining full module name for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> (force_visible: False) | |
| == 2020-10-21 10:52:27,249 easyconfig.py:2497 DEBUG No alternative software name specified to determine module name with | |
| == 2020-10-21 10:52:27,250 toolchain.py:584 DEBUG Toolchain definition for {'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
| == 2020-10-21 10:52:27,251 toolchain.py:59 DEBUG Obtained details for 'GCC' in toolchain '{'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}' from cache | |
| == 2020-10-21 10:52:27,252 toolchain.py:134 DEBUG Found compilers [{'external_module_metadata': {}, 'short_mod_name': 'GCC/10.2.0', 'toolchain': {'version': 'system', 'name': 'system'}, 'name': 'GCC', 'full_mod_name': 'Core/GCC/10.2.0', 'system': True, 'build_only': False, 'versionsuffix': '', 'version': '10.2.0', 'toolchain_inherited': True, 'hidden': False, 'external_module': False}] for toolchain foss ({'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}) | |
| == 2020-10-21 10:52:27,253 toolchain.py:584 DEBUG Toolchain definition for {'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}: {'LAPACK': ['OpenBLAS'], 'SCALAPACK': ['ScaLAPACK'], 'BLAS': ['OpenBLAS'], 'FFT': ['FFTW'], 'BLACS': ['BLACS'], 'MPI': ['OpenMPI'], 'COMPILER': ['GCC']} | |
| == 2020-10-21 10:52:27,254 toolchain.py:59 DEBUG Obtained details for 'OpenMPI' in toolchain '{'full_mod_name': 'Core/foss/2020b', 'versionsuffix': '', 'version': '2020b', 'toolchain': {'version': '', 'name': 'system'}, 'name': 'foss', 'short_mod_name': 'foss/2020b', 'hidden': False, 'parsed': True, 'system': True}' from cache | |
| == 2020-10-21 10:52:27,255 utilities.py:102 DEBUG Module name MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3 validated | |
| == 2020-10-21 10:52:27,255 easyconfig.py:2528 DEBUG Obtained valid full module name MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3 | |
| == 2020-10-21 10:52:27,256 easyblock.py:1886 INFO Checking dirs that need to be created: ['/home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3', '/home/l/lars/Public/easybuild/modules/all/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL'] | |
| == 2020-10-21 10:52:27,257 filetools.py:1500 INFO Creating directory /home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3 (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-21 10:52:27,263 filetools.py:1500 INFO Creating directory /home/l/lars/Public/easybuild/modules/all/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-21 10:52:27,294 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-21 10:52:27,298 configuremake.py:93 INFO config.guess version: 2018-08-29 (last updated: 2020-09-14T14:18:58, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2020-10-21 10:52:27,299 configuremake.py:148 INFO Found config.guess at /pfs/software/open_sources/generic/eb_v4.3.0/ConfigureMake/config.guess | |
| == 2020-10-21 10:52:27,300 easyblock.py:3025 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2020-10-21 10:52:27,300 build_log.py:265 INFO creating build dir, resetting environment... | |
| == 2020-10-21 10:52:27,301 easyblock.py:3033 INFO Starting ready step | |
| == 2020-10-21 10:52:27,301 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-21 10:52:27,302 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:27,302 templates.py:191 DEBUG version found in easyconfig is 2.3 | |
| == 2020-10-21 10:52:27,303 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,304 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,304 templates.py:276 DEBUG name: name, config: HPL | |
| == 2020-10-21 10:52:27,305 templates.py:276 DEBUG name: parallel, config: None | |
| == 2020-10-21 10:52:27,305 templates.py:276 DEBUG name: version, config: 2.3 | |
| == 2020-10-21 10:52:27,306 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-21 10:52:27,306 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-21 10:52:27,307 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-21 10:52:27,307 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-21 10:52:27,308 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hpl', builddir='/scratch/eb-lars/HPL/2.3/foss-2020b', github_account='hpl', installdir='/home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3', mpi_cmd_prefix='mpirun -n 1', name='HPL', nameletter='H', nameletterlower='h', namelower='hpl', toolchain_name='foss', toolchain_version='2020b', version='2.3', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-21 10:52:27,309 easyblock.py:3039 INFO Running method check_readiness_step part of step ready | |
| == 2020-10-21 10:52:27,309 easyblock.py:1707 DEBUG Desired parallelism specified via 'parallel' build option: 32 | |
| == 2020-10-21 10:52:27,310 easyblock.py:1710 INFO Setting parallelism: 32 | |
| == 2020-10-21 10:52:27,310 modules.py:791 DEBUG Current MODULEPATH: /home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core | |
| == 2020-10-21 10:52:27,311 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2020-10-21 10:52:27,312 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2020-10-21 10:52:27,312 modules.py:802 DEBUG Running module command '/hpc2n/eb/software/lmod/lmod/libexec/lmod python --terse list' from /scratch/lvtmp/eb-G73FTh/tmpTuSGcq/easybuilders | |
| == 2020-10-21 10:52:27,671 modules.py:809 DEBUG Output of module command '/hpc2n/eb/software/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["MODULEPATH"] = "/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "bCIsIi9ocGMybi9lYi9tb2R1bGVzL2FsbCIsIi9ocGMybi9lYi9tb2R1bGVzL2FsbC9Db3JlIiwiL2hwYzJuL2ViL21vZHVsZXMvYWxsL0xpbnV4IiwiL2hwYzJuL2ViL3NvZnR3YXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ocGMybi9lYi9tb2R1bGVzL2FsbC9MaW51eDovaHBjMm4vZWIvbW9kdWxlcy9hbGwvQ29yZTovaHBjMm4vZWIvc29mdHdhcmUvbG1vZC9sbW9kL21vZHVsZWZpbGVzL0NvcmUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "4"; | |
| ; stderr: snicenvironment | |
| systemdefault | |
| EasyBuild/4.3.0 | |
| eb_user/.current | |
| SoftInst/current | |
| == 2020-10-21 10:52:27,673 modules.py:1342 DEBUG Output found in stdout, seems like '/hpc2n/eb/software/lmod/lmod/libexec/lmod python --terse list' ran fine | |
| == 2020-10-21 10:52:27,674 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2020-10-21 10:52:27,676 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2020-10-21 10:52:27,676 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2020-10-21 10:52:27,677 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-21 10:52:27,678 easyblock.py:1749 WARNING Loaded modules detected: ['snicenvironment', 'systemdefault', 'EasyBuild/4.3.0', 'eb_user/.current', 'SoftInst/current'] | |
| == 2020-10-21 10:52:27,681 easyblock.py:3039 INFO Running method make_builddir part of step ready | |
| == 2020-10-21 10:52:27,682 easyblock.py:904 DEBUG Creating the build directory /scratch/eb-lars/HPL/2.3/foss-2020b (cleanup: True) | |
| == 2020-10-21 10:52:27,683 filetools.py:1500 INFO Creating directory /scratch/eb-lars/HPL/2.3/foss-2020b (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-21 10:52:27,684 easyblock.py:3039 INFO Running method reset_env part of step ready | |
| == 2020-10-21 10:52:27,686 easyblock.py:3039 INFO Running method handle_iterate_opts part of step ready | |
| == 2020-10-21 10:52:27,687 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-21 10:52:27,688 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:27,689 templates.py:191 DEBUG version found in easyconfig is 2.3 | |
| == 2020-10-21 10:52:27,690 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,690 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,691 templates.py:276 DEBUG name: name, config: HPL | |
| == 2020-10-21 10:52:27,691 templates.py:276 DEBUG name: parallel, config: 32 | |
| == 2020-10-21 10:52:27,692 templates.py:276 DEBUG name: version, config: 2.3 | |
| == 2020-10-21 10:52:27,692 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-21 10:52:27,692 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-21 10:52:27,693 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-21 10:52:27,694 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-21 10:52:27,695 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hpl', builddir='/scratch/eb-lars/HPL/2.3/foss-2020b', github_account='hpl', installdir='/home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3', mpi_cmd_prefix='mpirun -n 1', name='HPL', nameletter='H', nameletterlower='h', namelower='hpl', parallel='32', toolchain_name='foss', toolchain_version='2020b', version='2.3', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-21 10:52:27,696 easyblock.py:3025 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2020-10-21 10:52:27,696 build_log.py:265 INFO unpacking... | |
| == 2020-10-21 10:52:27,697 easyblock.py:3033 INFO Starting source step | |
| == 2020-10-21 10:52:27,697 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-21 10:52:27,698 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:27,699 templates.py:191 DEBUG version found in easyconfig is 2.3 | |
| == 2020-10-21 10:52:27,699 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,700 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,700 templates.py:276 DEBUG name: name, config: HPL | |
| == 2020-10-21 10:52:27,701 templates.py:276 DEBUG name: parallel, config: 32 | |
| == 2020-10-21 10:52:27,701 templates.py:276 DEBUG name: version, config: 2.3 | |
| == 2020-10-21 10:52:27,702 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-21 10:52:27,702 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-21 10:52:27,703 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-21 10:52:27,704 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-21 10:52:27,704 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hpl', builddir='/scratch/eb-lars/HPL/2.3/foss-2020b', github_account='hpl', installdir='/home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3', mpi_cmd_prefix='mpirun -n 1', name='HPL', nameletter='H', nameletterlower='h', namelower='hpl', parallel='32', toolchain_name='foss', toolchain_version='2020b', version='2.3', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-21 10:52:27,705 easyblock.py:3039 INFO Running method checksum_step part of step source | |
| == 2020-10-21 10:52:27,706 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-21 10:52:27,719 filetools.py:1029 DEBUG Computed sha256 checksum for /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz: 32c5c17d22330e6f2337b681aded51637fb6008d3f0eb7c277b163fadd612830 (correct checksum: 32c5c17d22330e6f2337b681aded51637fb6008d3f0eb7c277b163fadd612830) | |
| == 2020-10-21 10:52:27,720 easyblock.py:1902 INFO Checksum verification for /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz using 32c5c17d22330e6f2337b681aded51637fb6008d3f0eb7c277b163fadd612830 passed. | |
| == 2020-10-21 10:52:27,720 filetools.py:955 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2020-10-21 10:52:27,721 filetools.py:1029 DEBUG Computed sha256 checksum for /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch: 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6 (correct checksum: 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6) | |
| == 2020-10-21 10:52:27,722 easyblock.py:1902 INFO Checksum verification for /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch using 2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6 passed. | |
| == 2020-10-21 10:52:27,722 easyblock.py:3039 INFO Running method extract_step part of step source | |
| == 2020-10-21 10:52:27,722 easyblock.py:1989 INFO Unpacking source hpl-2.3.tar.gz | |
| == 2020-10-21 10:52:27,723 filetools.py:1528 DEBUG Not creating existing path /scratch/eb-lars/HPL/2.3/foss-2020b | |
| == 2020-10-21 10:52:27,724 filetools.py:406 DEBUG Unpacking /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz in directory /scratch/eb-lars/HPL/2.3/foss-2020b | |
| == 2020-10-21 10:52:27,725 run.py:203 DEBUG run_cmd: running cmd tar xzf /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz (in /scratch/eb-lars/HPL/2.3/foss-2020b) | |
| == 2020-10-21 10:52:27,726 run.py:222 INFO running cmd: tar xzf /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz | |
| == 2020-10-21 10:52:27,900 run.py:540 DEBUG cmd "tar xzf /pfs/software/open_sources/h/HPL/hpl-2.3.tar.gz" exited with exit code 0 and output: | |
| == 2020-10-21 10:52:27,901 run.py:574 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2020-10-21 10:52:27,903 filetools.py:1083 DEBUG Last dir list ['acinclude.m4', 'aclocal.m4', 'AUTHORS', 'BUGS', 'ChangeLog', 'compile', 'config.guess', 'config.sub', 'configure', 'configure.ac', 'COPYING', 'COPYRIGHT', 'depcomp', 'HISTORY', 'include', 'INSTALL', 'install-sh', 'Make.top', 'Makefile', 'Makefile.am', 'Makefile.in', 'makes', 'man', 'missing', 'NEWS', 'README', 'setup', 'src', 'testing', 'THANKS', 'TODO', 'TUNING', 'www'] | |
| == 2020-10-21 10:52:27,904 filetools.py:1084 DEBUG Possible new dir /scratch/eb-lars/HPL/2.3/foss-2020b/hpl-2.3 found | |
| == 2020-10-21 10:52:27,905 easyblock.py:3025 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2020-10-21 10:52:27,906 build_log.py:265 INFO patching... | |
| == 2020-10-21 10:52:27,906 easyblock.py:3033 INFO Starting patch step | |
| == 2020-10-21 10:52:27,907 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-21 10:52:27,908 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:27,909 templates.py:191 DEBUG version found in easyconfig is 2.3 | |
| == 2020-10-21 10:52:27,910 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,911 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,911 templates.py:276 DEBUG name: name, config: HPL | |
| == 2020-10-21 10:52:27,912 templates.py:276 DEBUG name: parallel, config: 32 | |
| == 2020-10-21 10:52:27,912 templates.py:276 DEBUG name: version, config: 2.3 | |
| == 2020-10-21 10:52:27,913 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-21 10:52:27,913 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-21 10:52:27,914 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-21 10:52:27,915 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-21 10:52:27,916 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hpl', builddir='/scratch/eb-lars/HPL/2.3/foss-2020b', github_account='hpl', installdir='/home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3', mpi_cmd_prefix='mpirun -n 1', name='HPL', nameletter='H', nameletterlower='h', namelower='hpl', parallel='32', toolchain_name='foss', toolchain_version='2020b', version='2.3', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-21 10:52:27,917 easyblock.py:3039 INFO Running method patch_step part of step patch | |
| == 2020-10-21 10:52:27,917 easyblock.py:2003 INFO Applying patch HPL_parallel-make.patch | |
| == 2020-10-21 10:52:27,918 easyblock.py:2016 DEBUG Source index: 0; patch level: None; source path suffix: ; copy patch: <module 'copy' from '/usr/lib/python2.7/copy.py'> | |
| == 2020-10-21 10:52:27,918 easyblock.py:2021 DEBUG Determine begin path for patch HPL_parallel-make.patch: /scratch/eb-lars/HPL/2.3/foss-2020b/hpl-2.3 | |
| == 2020-10-21 10:52:27,919 easyblock.py:2030 DEBUG Applying patch {'path': '/scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch', 'md5': '1ea6a64ba93676bbfe0b8f1f2cba02a7', 'name': 'HPL_parallel-make.patch', 'sha256': '2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6', 'checksum': '2a5bf9c4f328049828ddecec7ba3f05a9e25d236f4212747c53bd22fea80c5e6'} in path /scratch/eb-lars/HPL/2.3/foss-2020b/hpl-2.3 | |
| == 2020-10-21 10:52:27,922 filetools.py:1268 DEBUG Guessed patch level 0 for patch /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch | |
| == 2020-10-21 10:52:27,923 run.py:203 DEBUG run_cmd: running cmd patch -b -p0 -i /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch (in /scratch/eb-lars/HPL/2.3/foss-2020b/hpl-2.3) | |
| == 2020-10-21 10:52:27,924 run.py:222 INFO running cmd: patch -b -p0 -i /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch | |
| == 2020-10-21 10:52:27,978 run.py:540 DEBUG cmd "patch -b -p0 -i /scratch/lvtmp/eb-G73FTh/files_pr11489/h/HPL/HPL_parallel-make.patch" exited with exit code 0 and output: | |
| patching file Makefile | |
| == 2020-10-21 10:52:27,979 run.py:574 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2020-10-21 10:52:27,980 easyblock.py:3025 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2020-10-21 10:52:27,981 build_log.py:265 INFO preparing... | |
| == 2020-10-21 10:52:27,981 easyblock.py:3033 INFO Starting prepare step | |
| == 2020-10-21 10:52:27,982 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-21 10:52:27,983 templates.py:164 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:27,983 templates.py:191 DEBUG version found in easyconfig is 2.3 | |
| == 2020-10-21 10:52:27,984 templates.py:276 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,985 templates.py:276 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-10-21 10:52:27,985 templates.py:276 DEBUG name: name, config: HPL | |
| == 2020-10-21 10:52:27,986 templates.py:276 DEBUG name: parallel, config: 32 | |
| == 2020-10-21 10:52:27,986 templates.py:276 DEBUG name: version, config: 2.3 | |
| == 2020-10-21 10:52:27,986 templates.py:276 DEBUG name: versionsuffix, config: | |
| == 2020-10-21 10:52:27,987 templates.py:276 DEBUG name: versionprefix, config: | |
| == 2020-10-21 10:52:27,988 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-21 10:52:27,988 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-21 10:52:27,989 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hpl', builddir='/scratch/eb-lars/HPL/2.3/foss-2020b', github_account='hpl', installdir='/home/l/lars/Public/easybuild/software/MPI/GCC/10.2.0/OpenMPI/4.0.5/HPL/2.3', mpi_cmd_prefix='mpirun -n 1', name='HPL', nameletter='H', nameletterlower='h', namelower='hpl', parallel='32', toolchain_name='foss', toolchain_version='2020b', version='2.3', version_major='2', version_major_minor='2.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-21 10:52:27,990 easyblock.py:3039 INFO Running method prepare_step part of step prepare | |
| == 2020-10-21 10:52:27,991 easyconfig.py:2588 DEBUG Determining initial module paths for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x146e253bf290> | |
| == 2020-10-21 10:52:27,991 easyconfig.py:2590 DEBUG Obtained initial module paths: ['Core'] | |
| == 2020-10-21 10:52:27,996 filetools.py:1528 DEBUG Not creating existing path /home/l/lars/Public/easybuild/modules/all/Core | |
| == 2020-10-21 10:52:27,997 modules.py:791 DEBUG Current MODULEPATH: /home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core | |
| == 2020-10-21 10:52:27,997 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2020-10-21 10:52:27,998 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2020-10-21 10:52:27,999 modules.py:802 DEBUG Running module command '/hpc2n/eb/software/lmod/lmod/libexec/lmod python use /home/l/lars/Public/easybuild/modules/all/Core' from /scratch/eb-lars/HPL/2.3/foss-2020b/hpl-2.3 | |
| == 2020-10-21 10:52:29,907 modules.py:809 DEBUG Output of module command '/hpc2n/eb/software/lmod/lmod/libexec/lmod python use /home/l/lars/Public/easybuild/modules/all/Core': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/home/l/lars/Public/easybuild/modules/all/Core:1;/home/l/lars/Public/easybuild/modules/all:1;/hpc2n/eb/modules/all:1;/hpc2n/eb/modules/all/Core:5;/hpc2n/eb/modules/all/Linux:1;/hpc2n/eb/software/lmod/lmod/modulefiles/Core:1"; | |
| os.environ["MODULEPATH"] = "/home/l/lars/Public/easybuild/modules/all/Core:/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPTg2NDAwLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXtFYXN5QnVpbGQ9e1siZm4iXT0iL2hwYzJuL2ViL21vZHVsZXMvYWxsL0NvcmUvRWFzeUJ1aWxkLzQuMy4wLmx1YSIsWyJmdWxsTmFtZSJdPSJFYXN5QnVpbGQvNC4zLjAiLFsibG9hZE9yZGVyIl09Myxwcm9wVD17fSxbInN0YWNrRGVwdGgiXT0xLFsic3RhdHVzIl09ImFjdGl2ZSIsWyJ1c2VyTmFtZSJdPSJFYXN5QnVpbGQiLH0sU29mdEluc3Q9e1siZm4iXT0iL2hwYzJuL2ViL21vZHVsZXMvYWxsL0NvcmUvU29mdEluc3QvY3VycmVudC5sdWEiLFsiZnVsbE5hbWUiXT0iU29mdEluc3QvY3VycmVu"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "bC9Db3JlIiwiL2hvbWUvbC9sYXJzL1B1YmxpYy9lYXN5YnVpbGQvbW9kdWxlcy9hbGwiLCIvaHBjMm4vZWIvbW9kdWxlcy9hbGwiLCIvaHBjMm4vZWIvbW9kdWxlcy9hbGwvQ29yZSIsIi9ocGMybi9lYi9tb2R1bGVzL2FsbC9MaW51eCIsIi9ocGMybi9lYi9zb2Z0d2FyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvaHBjMm4vZWIvbW9kdWxlcy9hbGwvTGludXg6L2hwYzJuL2ViL21vZHVsZXMvYWxsL0NvcmU6L2hwYzJuL2ViL3NvZnR3YXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9"; | |
| os.environ["_ModuleTable_Sz_"] = "4"; | |
| ; stderr: | |
| == 2020-10-21 10:52:29,909 modules.py:1342 DEBUG Output found in stdout, seems like '/hpc2n/eb/software/lmod/lmod/libexec/lmod python use /home/l/lars/Public/easybuild/modules/all/Core' ran fine | |
| == 2020-10-21 10:52:29,910 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2020-10-21 10:52:29,911 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2020-10-21 10:52:29,912 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2020-10-21 10:52:29,912 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-21 10:52:29,914 modules.py:352 DEBUG $MODULEPATH after set_mod_paths: /home/l/lars/Public/easybuild/modules/all/Core:/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core | |
| == 2020-10-21 10:52:29,915 easyconfig.py:1062 DEBUG Dependencies BEFORE filtering: [] | |
| == 2020-10-21 10:52:29,916 easyconfig.py:1065 DEBUG Dependencies AFTER filtering: [] | |
| == 2020-10-21 10:52:29,917 toolchain.py:519 DEBUG _check_dependencies: adding toolchain dependencies [] | |
| == 2020-10-21 10:52:29,917 toolchain.py:529 DEBUG _check_dependencies: MODULEPATH: /home/l/lars/Public/easybuild/modules/all/Core:/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core | |
| == 2020-10-21 10:52:29,918 modules.py:470 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/home/l/lars/Public/easybuild/modules/all/Core:/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core', 'lmod', '--show-hidden')': ['Anaconda3/4.4.0', 'Autoconf/2.69', 'Automake/1.15', 'Autotools/20150215', 'BLAST/2.2.26-Linux_x86_64', 'Bison/3.0.4', 'Bison/3.0.5', 'Bison/3.3.2', 'Bison/3.5.3', 'Bison/3.7.1', 'COMSOL/5.4.0.225', 'CUDA/10.0.130', 'CUDA/10.1.105', 'CUDA/10.1.243', 'CUDA/8.0.61', 'CUDA/9.0.176', 'CUDA/9.1.85', 'CUDA/9.2.88', 'Chimera/1.13.1-linux_x86_64', 'Compiler/GCC/10.2.0/OpenBLAS/0.3.11', 'Compiler/GCC/10.2.0/OpenMPI/4.0.5', 'Compiler/GCC/6.4.0-2.28/FFTW/3.3.7-serial', 'Compiler/GCC/6.4.0-2.28/OpenBLAS/0.2.20', 'Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.1', 'Compiler/GCC/6.4.0-2.28/OpenMPI/2.1.2', 'Compiler/GCC/6.4.0-2.28/Python/3.6.4', 'Compiler/GCC/7.3.0-2.30/OpenBLAS/0.3.1', 'Compiler/GCC/7.3.0-2.30/OpenMPI/3.1.1', 'Compiler/GCC/7.3.0-2.30/impi/2018.3.222', 'Compiler/GCC/8.2.0-2.31.1/GSL/2.5', 'Compiler/GCC/8.2.0-2.31.1/OpenBLAS/0.3.5', 'Compiler/GCC/8.2.0-2.31.1/OpenMPI/3.1.3', 'Compiler/GCC/8.3.0/OpenBLAS/0.3.7', 'Compiler/GCC/8.3.0/OpenMPI/3.1.4', 'Compiler/GCC/9.3.0/OpenBLAS/0.3.8', 'Compiler/GCC/9.3.0/OpenBLAS/0.3.9', 'Compiler/GCC/9.3.0/OpenMPI/4.0.3', 'Compiler/GCCcore/10.2.0/Autoconf/2.69', 'Compiler/GCCcore/10.2.0/Automake/1.16.2', 'Compiler/GCCcore/10.2.0/Autotools/20200321', 'Compiler/GCCcore/10.2.0/Bison/3.7.1', 'Compiler/GCCcore/10.2.0/CMake/3.18.4', 'Compiler/GCCcore/10.2.0/M4/1.4.18', 'Compiler/GCCcore/10.2.0/PMIx/3.1.5', 'Compiler/GCCcore/10.2.0/Perl/5.32.0', 'Compiler/GCCcore/10.2.0/UCX/1.9.0', 'Compiler/GCCcore/10.2.0/XZ/5.2.5', 'Compiler/GCCcore/10.2.0/binutils/2.35', 'Compiler/GCCcore/10.2.0/bzip2/1.0.8', 'Compiler/GCCcore/10.2.0/cURL/7.72.0', 'Compiler/GCCcore/10.2.0/expat/2.2.9', 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'MPI/intel/2017.1.132-GCC-6.3.0-2.27/impi/2017.1.132/imkl/2017.1.132', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/Boost/1.65.1', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/FFTW/3.3.6', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/GROMACS/2016.4', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/HDF5/1.10.1', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/LLVM/4.0.1', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/LLVM/5.0.0', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/Mako/1.0.7-Python-2.7.14', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/Mesa/17.2.4', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/Python/2.7.14', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/Python/3.6.3', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/Qt/4.8.7', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/Qt5/5.8.0', 'MPI/intel/2017.4.196-GCC-6.4.0-2.28/impi/2017.3.196/imkl/2017.3.196', 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'MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/Python/3.6.6', 'MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/imkl/2018.3.222', 'MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/netCDF-Fortran/4.4.4', 'MPI/intel/2018.3.222-GCC-7.3.0-2.30/impi/2018.3.222/netCDF/4.6.1', 'MPI/intel/2019.1.144-GCC-8.2.0-2.31.1/impi/2018.4.274/GROMACS/2019.1', 'MPI/intel/2019.1.144-GCC-8.2.0-2.31.1/impi/2018.4.274/imkl/2019.1.144', 'MPI/intel/2019.5.281/impi/2018.5.288/HDF5/1.10.5', 'MPI/intel/2019.5.281/impi/2018.5.288/LAMMPS/7Aug2019-Python-3.7.4', 'MPI/intel/2019.5.281/impi/2018.5.288/imkl/2019.5.281', 'MPI/intel/2019.5.281/impi/2018.5.288/netCDF/4.7.1', 'MPI/intel/2020.1.217/impi/2019.7.217/HPL/2.3', 'MPI/intel/2020.1.217/impi/2019.7.217/SciPy-bundle/2020.03-Python-3.8.2', 'MPI/intel/2020.1.217/impi/2019.7.217/imkl/2020.1.217', 'Maven/3.6.0', 'MotionCor2/1.1.0', 'MotionCor2/1.2.3', 'NetLogo/6.1.1-64', 'PGI/16.9-GCC-5.4.0-2.26', 'PGI/17.10-GCC-6.4.0-2.28', 'PGI/18.7-GCC-7.3.0-2.30', 'PGI/18.7-GCC-7.3.0-2.30-llvm', 'PGI/19.7-GCC-8.3.0-2.32', 'PGI/19.9-GCC-8.3.0-2.32', 'Pandoc/2.10', 'Pilon/1.23-Java-11', 'Python-bare/3.6.6', 'SQLite-bare/3.24.0', 'Schrodinger/2014-4_Linux-x86_64', 'Schrodinger/2016-1_Linux-x86_64', 'Schrodinger/2016-3_Linux-x86_64', 'Schrodinger/2016-4_Linux-x86_64', 'Schrodinger/2017-2_Linux-x86_64', 'Schrodinger/2018-1_Advanced_Linux-x86_64', 'Schrodinger/2018-3_Advanced_Linux-x86_64', 'SoftInst/current', 'Trimmomatic/0.38-Java-1.8', 'Trimmomatic/0.39-Java-11', 'VASP-data/5.4', 'VTune/2019_update5', 'YALMIP/20181012', 'ant/1.10.1-Java-1.8.0_121', 'ant/1.10.1-Java-1.8.0_152', 'ant/1.10.5-Java-1.8', 'ant/1.10.7-Java-11', 'binutils/2.25', 'binutils/2.26', 'binutils/2.27', 'binutils/2.28', 'binutils/2.29', 'binutils/2.30', 'binutils/2.31.1', 'binutils/2.32', 'binutils/2.34', 'binutils/2.35', 'bzip2/1.0.6', 'cusp/develop-20200312-gdc77579', 'eb_builder/.current', 'eb_builder/default', 'eb_builder/develop', 'eb_user/.current', 'flex/2.5.39', 'flex/2.6.0', 'flex/2.6.3', 'flex/2.6.4', 'foss/2015.01', 'foss/2016b', 'foss/2017a', 'foss/2017b', 'foss/2018.08', 'foss/2018a', 'foss/2018b', 'foss/2019a', 'foss/2019b', 'foss/2020a', 'fosscuda/2017b', 'fosscuda/2018a', 'fosscuda/2018b', 'fosscuda/2019a', 'fosscuda/2019b', 'gaussian/09.e.01-AVX', 'gaussian/16.A.03-AVX', 'gaussian/16.A.03-AVX2', 'gaussian/16.A.03-Legacy', 'gaussian/16.A.03-SSE4', 'gaussian/16.B.01-AVX2', 'gaussian/16.C.01-AVX2', 'gcccuda/2015.01', 'gcccuda/2016.10', 'gcccuda/2017.01', 'gcccuda/2017.02', 'gcccuda/2017b', 'gcccuda/2018a', 'gcccuda/2018b', 'gcccuda/2019a', 'gcccuda/2019b', 'gettext/0.19.8', 'gettext/0.19.8.1', 'gettext/0.20.1', 'gettext/0.21', 'gimkl/2017b', 'gimkl/2018b', 'gimpi/2017b', 'gimpi/2018.03', 'gimpi/2018a', 'gimpi/2018b', 'gimpic/2017.02', 'gimpic/2017b', 'giolf/2017b', 'giolf/2018a', 'giolfc/2017.02', 'giolfc/2017b', 'git-lfs/2.11.0', 'git-lfs/2.7.1', 'golf/2018a', 'gomkl/2018.03', 'gomkl/2019a', 'gomkl/2019b', 'gompi/1.4.10', 'gompi/2015.01', 'gompi/2016b', 'gompi/2017a', 'gompi/2017b', 'gompi/2018.03', 'gompi/2018.08', 'gompi/2018a', 'gompi/2018b', 'gompi/2019a', 'gompi/2019b', 'gompi/2020a', 'gompi/2020b', 'gompic/2015.01', 'gompic/2016.10', 'gompic/2017.01', 'gompic/2017.02', 'gompic/2017b', 'gompic/2018a', 'gompic/2018b', 'gompic/2019a', 'gompic/2019b', 'goolf/1.4.10', 'goolfc/2015.01', 'goolfc/2016.10', 'goolfc/2017.01', 'goolfc/2017.02', 'goolfc/2017b', 'goolfc/2018a', 'help2man/1.47.4', 'icc/2017.1.132-GCC-5.4.0-2.26', 'icc/2017.1.132-GCC-6.3.0-2.27', 'icc/2017.4.196-GCC-6.4.0-2.28', 'icc/2017.5.239-GCC-6.4.0-2.28', 'icc/2018.0.128-GCC-6.4.0-2.28', 'icc/2018.1.163-GCC-6.4.0-2.28', 'icc/2018.3.222-GCC-7.3.0-2.30', 'icc/2019.1.144-GCC-8.2.0-2.31.1', 'iccifort/2017.1.132-GCC-5.4.0-2.26', 'iccifort/2017.1.132-GCC-6.3.0-2.27', 'iccifort/2017.4.196-GCC-6.4.0-2.28', 'iccifort/2017.5.239-GCC-6.4.0-2.28', 'iccifort/2018.0.128-GCC-6.4.0-2.28', 'iccifort/2018.1.163-GCC-6.4.0-2.28', 'iccifort/2018.3.222-GCC-7.3.0-2.30', 'iccifort/2019.1.144-GCC-8.2.0-2.31.1', 'iccifort/2019.5.281', 'iccifort/2020.1.217', 'iccifortcuda/2016.11', 'iccifortcuda/2017.01', 'iccifortcuda/2017.4.196-GCC-6.4.0-2.28', 'iccifortcuda/2017b', 'iccifortcuda/2018.3.222-GCC-7.3.0-2.30', 'iccifortcuda/2019a', 'iccifortcuda/2019b', 'ifort/2017.1.132-GCC-5.4.0-2.26', 'ifort/2017.1.132-GCC-6.3.0-2.27', 'ifort/2017.4.196-GCC-6.4.0-2.28', 'ifort/2017.5.239-GCC-6.4.0-2.28', 'ifort/2018.0.128-GCC-6.4.0-2.28', 'ifort/2018.1.163-GCC-6.4.0-2.28', 'ifort/2018.3.222-GCC-7.3.0-2.30', 'ifort/2019.1.144-GCC-8.2.0-2.31.1', 'iimpi/2017.01-GCC-5.4.0-2.26', 'iimpi/2017.09', 'iimpi/2017a', 'iimpi/2017b', 'iimpi/2018.00', 'iimpi/2018.01', 'iimpi/2018a', 'iimpi/2018b', 'iimpi/2019a', 'iimpi/2019b', 'iimpi/2020a', 'iimpic/2016.11', 'iimpic/2017.01', 'iimpic/2017b', 'iimpic/2018b', 'iimpic/2019a', 'iimpic/2019b', 'intel/2017.01', 'intel/2017.09', 'intel/2017a', 'intel/2017b', 'intel/2018.00', 'intel/2018.01', 'intel/2018a', 'intel/2018b', 'intel/2019a', 'intel/2019b', 'intel/2020a', 'intelcuda/2016.11', 'intelcuda/2017.01', 'intelcuda/2017b', 'intelcuda/2018b', 'intelcuda/2019a', 'intelcuda/2019b', 'intervaltree/20200206', 'iomkl/2017.01', 'iomkl/2017a', 'iomkl/2017b', 'iomkl/2018b', 'iompi/2017.01', 'iompi/2017a', 'iompi/2017b', 'iompi/2018b', 'ipp/2017.1.132', 'julia/1.1.0', 'libtool/2.4.6', 'lmod', 'ncurses/6.0', 'ncurses/6.1', 'ncurses/6.2', 'picard/2.21.6-Java-11', 'pomkl/2018b', 'pompi/2017.10', 'pompi/2018b', 'reframe/2.16', 'settarg', 'singularity/2.6.1', 'singularity/3.4.0', 'singularity/3.4.1', 'singularity/3.4.2', 'singularity/3.5.3', 'snicenvironment', 'systemdefault', 'tbb/4.4.4.210', 'zlib/1.2.11', 'zlib/1.2.8'] | |
| == 2020-10-21 10:52:29,924 modules.py:606 INFO Checking whether Core/foss/2020b exists... | |
| == 2020-10-21 10:52:29,925 modules.py:614 INFO Module Core/foss/2020b not found in list of available modules, checking via 'module show'... | |
| == 2020-10-21 10:52:29,926 modules.py:550 DEBUG Checking whether Core/foss/2020b exists based on output of 'module show' | |
| == 2020-10-21 10:52:29,926 modules.py:791 DEBUG Current MODULEPATH: /home/l/lars/Public/easybuild/modules/all/Core:/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core | |
| == 2020-10-21 10:52:29,927 modules.py:798 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2020-10-21 10:52:29,928 modules.py:798 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2020-10-21 10:52:29,928 modules.py:802 DEBUG Running module command '/hpc2n/eb/software/lmod/lmod/libexec/lmod python show Core/foss/2020b' from /scratch/eb-lars/HPL/2.3/foss-2020b/hpl-2.3 | |
| == 2020-10-21 10:52:31,850 modules.py:809 DEBUG Output of module command '/hpc2n/eb/software/lmod/lmod/libexec/lmod python show Core/foss/2020b': stdout: os.environ["MODULEPATH"] = "/home/l/lars/Public/easybuild/modules/all/Core:/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "dCIsWyJsb2FkT3JkZXIiXT01LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTAsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09IlNvZnRJbnN0Iix9LGViX3VzZXI9e1siZm4iXT0iL2hwYzJuL2ViL21vZHVsZXMvYWxsL0NvcmUvZWJfdXNlci8uY3VycmVudC5sdWEiLFsiZnVsbE5hbWUiXT0iZWJfdXNlci8uY3VycmVudCIsWyJsb2FkT3JkZXIiXT00LHByb3BUPXt9LFsic3RhY2tEZXB0aCJdPTEsWyJzdGF0dXMiXT0iYWN0aXZlIixbInVzZXJOYW1lIl09ImViX3VzZXIvLmN1cnJlbnQiLH0sc25pY2Vudmlyb25tZW50PXtbImZuIl09Ii9ocGMybi9lYi9tb2R1bGVzL2FsbC9Db3JlL3NuaWNlbnZpcm9ubWVudC5sdWEiLFsiZnVsbE5hbWUiXT0ic25pY2Vudmlyb25t"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "bC9Db3JlIiwiL2hvbWUvbC9sYXJzL1B1YmxpYy9lYXN5YnVpbGQvbW9kdWxlcy9hbGwiLCIvaHBjMm4vZWIvbW9kdWxlcy9hbGwiLCIvaHBjMm4vZWIvbW9kdWxlcy9hbGwvQ29yZSIsIi9ocGMybi9lYi9tb2R1bGVzL2FsbC9MaW51eCIsIi9ocGMybi9lYi9zb2Z0d2FyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvaHBjMm4vZWIvbW9kdWxlcy9hbGwvTGludXg6L2hwYzJuL2ViL21vZHVsZXMvYWxsL0NvcmU6L2hwYzJuL2ViL3NvZnR3YXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIix9"; | |
| os.environ["_ModuleTable_Sz_"] = "4"; | |
| ; stderr: | |
| == 2020-10-21 10:52:31,851 modules.py:700 DEBUG Cached result for 'module show Core/foss/2020b' with key '('MODULEPATH=/home/l/lars/Public/easybuild/modules/all/Core:/home/l/lars/Public/easybuild/modules/all:/hpc2n/eb/modules/all:/hpc2n/eb/modules/all/Core:/hpc2n/eb/modules/all/Linux:/hpc2n/eb/software/lmod/lmod/modulefiles/Core', 'lmod', 'Core/foss/2020b')': | |
| == 2020-10-21 10:52:31,852 modules.py:560 DEBUG Checking line '' to determine whether Core/foss/2020b exists... | |
| == 2020-10-21 10:52:31,852 modules.py:564 DEBUG Treating line '' as whitespace, so skipping it | |
| == 2020-10-21 10:52:31,853 modules.py:627 INFO Module Core/foss/2020b not found via module avail/show, checking whether it is a wrapper | |
| == 2020-10-21 10:52:31,864 modules.py:634 INFO Result for existence check of Core/foss/2020b module: False | |
| == 2020-10-21 10:52:31,878 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): No module found for toolchain: foss/2020b (at easybuild/tools/toolchain/toolchain.py:713 in _load_modules) | |
| == 2020-10-21 10:52:31,879 config.py:576 DEBUG software install path as specified by 'installpath' and 'subdir_software': /home/l/lars/Public/easybuild/software | |
| == 2020-10-21 10:52:31,880 filetools.py:1610 INFO Removing lock /home/l/lars/Public/easybuild/software/.locks/_home_l_lars_Public_easybuild_software_MPI_GCC_10.2.0_OpenMPI_4.0.5_HPL_2.3.lock... | |
| == 2020-10-21 10:52:31,883 filetools.py:330 INFO Path /home/l/lars/Public/easybuild/software/.locks/_home_l_lars_Public_easybuild_software_MPI_GCC_10.2.0_OpenMPI_4.0.5_HPL_2.3.lock successfully removed. | |
| == 2020-10-21 10:52:31,884 filetools.py:1614 INFO Lock removed: /home/l/lars/Public/easybuild/software/.locks/_home_l_lars_Public_easybuild_software_MPI_GCC_10.2.0_OpenMPI_4.0.5_HPL_2.3.lock | |
| == 2020-10-21 10:52:31,885 easyblock.py:3311 WARNING build failed (first 300 chars): No module found for toolchain: foss/2020b | |
| == 2020-10-21 10:52:31,886 easyblock.py:295 INFO Closing log for application name HPL version 2.3 |
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