Created
June 22, 2022 09:34
-
-
Save bbpbuildbot/7d516525bff87a756f7190e7fe62cd96 to your computer and use it in GitHub Desktop.
Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/coreneuron/-/pipelines/61704 (:white_check_mark:) running on GitHub PR BlueBrain/CoreNeuron#830.
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886532:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886532:resolve_secrets [0Ksection_start:1655886532:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor471265187, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272569 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272569_PROD_P112_CP7_C11 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563718 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272569_PROD_P112_CP7_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563718 --cpus-per-task=8 --mem=76G | |
| section_end:1655886534:prepare_executor [0Ksection_start:1655886534:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n16 via bbpv1.epfl.ch... | |
| section_end:1655886539:prepare_script [0Ksection_start:1655886539:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886539:get_sources [0Ksection_start:1655886539:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191936 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886541:restore_cache [0Ksection_start:1655886541:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=192585 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272556 responseStatus[0;m=200 OK token[0;m=uHoCNEmA | |
| section_end:1655886542:download_artifacts [0Ksection_start:1655886542:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272569/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272569/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272569/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272569/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272569/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272569_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +tests~legacy-unit build_type=Debug | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563718/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563718/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:32 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.14 / 0.51 (28.31 %) | |
| Files: 1473 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'iw7f7wskesewfnyvmtmk3lfqta3e4jpw' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+tests build_type=Debug | |
| Concretized | |
| -------------------------------- | |
| - iw7f7ws coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] 3narjkw ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] podtqd6 ^libsonata-report@1.1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] e7w5nez ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] kxkrl2g ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] unnpvpo ^fmt@8.1.1%intel@2021.4.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] f27a7nn ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/fmt-8.1.1-unnpvp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-kxkrl2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1.1-podtqd | |
| ==> Installing coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| ==> No binary for coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| Fetch: 3.98s. Build: 42.46s. Total: 46.45s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_intel-2021.4.0-skylake/coreneuron-develop-iw7f7w | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563718/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563718/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:05 2022 | |
| Hits: 107 / 112 (95.54 %) | |
| Direct: 89 / 112 (79.46 %) | |
| Preprocessed: 18 / 23 (78.26 %) | |
| Misses: 5 | |
| Direct: 23 | |
| Preprocessed: 5 | |
| Uncacheable: 18 | |
| Primary storage: | |
| Hits: 196 / 224 (87.50 %) | |
| Misses: 28 | |
| Cache size (GB): 0.15 / 0.51 (28.44 %) | |
| Files: 1483 | |
| Uncacheable: | |
| Called for linking: 15 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886668:step_script [0Ksection_start:1655886668:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200014 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Archive is up to date! [0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886669:archive_cache [0Ksection_start:1655886669:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200094 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272569 responseStatus[0;m=201 Created token[0;m=myidMhnG | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200152 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272569 responseStatus[0;m=201 Created token[0;m=myidMhnG | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200212 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272569 responseStatus[0;m=201 Created token[0;m=myidMhnG | |
| section_end:1655886671:upload_artifacts_on_success [0Ksection_start:1655886671:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886672:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886531:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886531:resolve_secrets [0Ksection_start:1655886531:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor076705279, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272563 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272563_PROD_P112_CP5_C9 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563716 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272563_PROD_P112_CP5_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563716 --cpus-per-task=8 --mem=76G | |
| section_end:1655886534:prepare_executor [0Ksection_start:1655886534:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n16 via bbpv1.epfl.ch... | |
| section_end:1655886539:prepare_script [0Ksection_start:1655886539:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886539:get_sources [0Ksection_start:1655886539:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc:unified-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=192026 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886541:restore_cache [0Ksection_start:1655886541:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=192515 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272556 responseStatus[0;m=200 OK token[0;m=uHoCNEmA | |
| section_end:1655886542:download_artifacts [0Ksection_start:1655886542:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272563/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272563/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272563/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272563/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272563/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272563_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+unified+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 7xhnxahexeffbne3dpzxwo5qcrumhnar | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563716/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563716/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:32 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.13 / 0.51 (24.75 %) | |
| Files: 1689 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '7xhnxahexeffbne3dpzxwo5qcrumhnar' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests+unified build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - 7xhnxah coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests+unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 6d2jeoj ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] v5zxpfc ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jeloytj ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] f62u3oh ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/fmt-8.1.1-jeloyt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-v5zxpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1.1-6d2jeo | |
| ==> Installing coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar | |
| ==> No binary for coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar | |
| Fetch: 4.87s. Build: 1m 11.22s. Total: 1m 16.09s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/coreneuron-develop-7xhnxa | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563716/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563716/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:38 2022 | |
| Hits: 107 / 115 (93.04 %) | |
| Direct: 89 / 115 (77.39 %) | |
| Preprocessed: 18 / 26 (69.23 %) | |
| Misses: 8 | |
| Direct: 26 | |
| Preprocessed: 8 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 196 / 230 (85.22 %) | |
| Misses: 34 | |
| Cache size (GB): 0.13 / 0.51 (24.73 %) | |
| Files: 1705 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886699:step_script [0Ksection_start:1655886699:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc:unified-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201472 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc%3Aunified-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886705:archive_cache [0Ksection_start:1655886705:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201664 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272563 responseStatus[0;m=201 Created token[0;m=15snGyEb | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201739 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272563 responseStatus[0;m=201 Created token[0;m=15snGyEb | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201820 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272563 responseStatus[0;m=201 Created token[0;m=15snGyEb | |
| section_end:1655886707:upload_artifacts_on_success [0Ksection_start:1655886707:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886707:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886531:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886531:resolve_secrets [0Ksection_start:1655886531:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor227826565, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272561 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272561_PROD_P112_CP4_C8 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563715 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272561_PROD_P112_CP4_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563715 --cpus-per-task=8 --mem=76G | |
| section_end:1655886533:prepare_executor [0Ksection_start:1655886533:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n16 via bbpv1.epfl.ch... | |
| section_end:1655886539:prepare_script [0Ksection_start:1655886539:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886539:get_sources [0Ksection_start:1655886539:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=191987 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886541:restore_cache [0Ksection_start:1655886541:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=192463 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272556 responseStatus[0;m=200 OK token[0;m=uHoCNEmA | |
| section_end:1655886542:download_artifacts [0Ksection_start:1655886542:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272561/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272561/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272561/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272561/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272561/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272561_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +gpu+openmp+tests~legacy-unit build_type=RelWithDebInfo | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 6qi7xiczl6qfolioernjyooskeukbk4m | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563715/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563715/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:32 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.13 / 0.51 (24.72 %) | |
| Files: 1672 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '6qi7xiczl6qfolioernjyooskeukbk4m' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+openmp+tests build_type=RelWithDebInfo | |
| Concretized | |
| -------------------------------- | |
| - 6qi7xic coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 6d2jeoj ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] v5zxpfc ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jeloytj ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] f62u3oh ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/fmt-8.1.1-jeloyt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-v5zxpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1.1-6d2jeo | |
| ==> Installing coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m | |
| ==> No binary for coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m | |
| Fetch: 4.75s. Build: 1m 11.42s. Total: 1m 16.16s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/coreneuron-develop-6qi7xi | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563715/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563715/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:38 2022 | |
| Hits: 107 / 115 (93.04 %) | |
| Direct: 89 / 115 (77.39 %) | |
| Preprocessed: 18 / 26 (69.23 %) | |
| Misses: 8 | |
| Direct: 26 | |
| Preprocessed: 8 | |
| Uncacheable: 19 | |
| Primary storage: | |
| Hits: 196 / 230 (85.22 %) | |
| Misses: 34 | |
| Cache size (GB): 0.13 / 0.51 (24.70 %) | |
| Files: 1688 | |
| Uncacheable: | |
| Called for linking: 16 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886699:step_script [0Ksection_start:1655886699:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201524 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Amod2c%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886705:archive_cache [0Ksection_start:1655886705:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201602 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272561 responseStatus[0;m=201 Created token[0;m=vewM1syi | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201702 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272561 responseStatus[0;m=201 Created token[0;m=vewM1syi | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201779 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272561 responseStatus[0;m=201 Created token[0;m=vewM1syi | |
| section_end:1655886707:upload_artifacts_on_success [0Ksection_start:1655886707:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886707:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886796:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886796:resolve_secrets [0Ksection_start:1655886796:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor390998597, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272572 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272572_PROD_P112_CP13_C6 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563742 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272572_PROD_P112_CP13_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563742 --cpus-per-task=8 --mem=76G | |
| section_end:1655886798:prepare_executor [0Ksection_start:1655886798:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655886802:prepare_script [0Ksection_start:1655886802:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886802:get_sources [0Ksection_start:1655886802:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254545 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886804:restore_cache [0Ksection_start:1655886804:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (272559)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=255061 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272559 responseStatus[0;m=200 OK token[0;m=TUUbHxzw | |
| section_end:1655886805:download_artifacts [0Ksection_start:1655886805:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272572/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272572/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272572/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272572/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272572/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272572_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%intel +nmodl+tests~legacy-unit build_type=Debug ^hpe-mpi%gcc ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563742/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563742/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:33:49 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.15 / 0.51 (28.95 %) | |
| Files: 1651 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'rh5oq7ygplbbyryh6avavlwff7ieo23w' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%intel~legacy-unit+nmodl+tests build_type=Debug | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - rh5oq7y coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| ==> No binary for coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| Fetch: 4.72s. Build: 50.14s. Total: 54.86s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_intel-2021.4.0-skylake/coreneuron-develop-rh5oq7 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563742/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563742/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:35:34 2022 | |
| Hits: 86 / 91 (94.51 %) | |
| Direct: 77 / 91 (84.62 %) | |
| Preprocessed: 9 / 14 (64.29 %) | |
| Misses: 5 | |
| Direct: 14 | |
| Preprocessed: 5 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 163 / 182 (89.56 %) | |
| Misses: 19 | |
| Cache size (GB): 0.15 / 0.51 (28.98 %) | |
| Files: 1670 | |
| Uncacheable: | |
| Called for linking: 13 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886934:step_script [0Ksection_start:1655886934:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=260731 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Aintel-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886942:archive_cache [0Ksection_start:1655886942:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=260939 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272572 responseStatus[0;m=201 Created token[0;m=mjvHJvjk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=260976 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272572 responseStatus[0;m=201 Created token[0;m=mjvHJvjk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=261017 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272572 responseStatus[0;m=201 Created token[0;m=mjvHJvjk | |
| section_end:1655886944:upload_artifacts_on_success [0Ksection_start:1655886944:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886944:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886796:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886796:resolve_secrets [0Ksection_start:1655886796:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor459020635, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272567 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272567_PROD_P112_CP12_C4 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563740 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272567_PROD_P112_CP12_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563740 --cpus-per-task=8 --mem=76G | |
| section_end:1655886798:prepare_executor [0Ksection_start:1655886798:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655886802:prepare_script [0Ksection_start:1655886802:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886802:get_sources [0Ksection_start:1655886802:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254506 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886804:restore_cache [0Ksection_start:1655886804:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (272559)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254989 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272559 responseStatus[0;m=200 OK token[0;m=TUUbHxzw | |
| section_end:1655886805:download_artifacts [0Ksection_start:1655886805:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272567/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272567/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272567/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272567/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272567/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272567_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl~openmp+gpu+tests~legacy-unit+sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563740/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563740/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:33:49 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.11 / 0.51 (21.75 %) | |
| Files: 1551 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '6q3vzbkyvzxputeeg6himnv7tcfu7ge7' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl~openmp+sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 6q3vzbk coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| ==> No binary for coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7 found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| Fetch: 4.09s. Build: 3m 41.84s. Total: 3m 45.93s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/coreneuron-develop-6q3vzb | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563740/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563740/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:38:27 2022 | |
| Hits: 86 / 93 (92.47 %) | |
| Direct: 77 / 93 (82.80 %) | |
| Preprocessed: 9 / 16 (56.25 %) | |
| Misses: 7 | |
| Direct: 16 | |
| Preprocessed: 7 | |
| Uncacheable: 16 | |
| Primary storage: | |
| Hits: 163 / 186 (87.63 %) | |
| Misses: 23 | |
| Cache size (GB): 0.11 / 0.51 (21.82 %) | |
| Files: 1574 | |
| Uncacheable: | |
| Called for linking: 13 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887108:step_script [0Ksection_start:1655887108:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=268596 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887115:archive_cache [0Ksection_start:1655887115:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269219 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272567 responseStatus[0;m=201 Created token[0;m=cPTxqcyz | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269281 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272567 responseStatus[0;m=201 Created token[0;m=cPTxqcyz | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269322 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272567 responseStatus[0;m=201 Created token[0;m=cPTxqcyz | |
| section_end:1655887116:upload_artifacts_on_success [0Ksection_start:1655887116:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887117:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886795:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886795:resolve_secrets [0Ksection_start:1655886795:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor860802433, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272565 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272565_PROD_P112_CP2_C2 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563739 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272565_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563739 --cpus-per-task=8 --mem=76G | |
| section_end:1655886797:prepare_executor [0Ksection_start:1655886797:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655886799:prepare_script [0Ksection_start:1655886799:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886800:get_sources [0Ksection_start:1655886800:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:coreneuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254224 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886802:restore_cache [0Ksection_start:1655886802:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:nmodl (272559)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=254413 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272559 responseStatus[0;m=200 OK token[0;m=TUUbHxzw | |
| section_end:1655886803:download_artifacts [0Ksection_start:1655886803:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272565/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272565/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272565/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272565/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272565/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272565_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install coreneuron%nvhpc +nmodl+openmp+gpu+tests~legacy-unit~sympy build_type=RelWithDebInfo ^hpe-mpi%gcc ^/4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be rjmenmrpgml6pswauzum5llfbry6ngnh | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563739/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563739/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:33:49 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.13 / 0.51 (25.48 %) | |
| Files: 1719 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'rjmenmrpgml6pswauzum5llfbry6ngnh' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - coreneuron%nvhpc+gpu~legacy-unit+nmodl+openmp~sympy+tests build_type=RelWithDebInfo | |
| - ^hpe-mpi%gcc | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - rjmenmr coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| ==> Installing coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh | |
| ==> No binary for coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> No patches needed for coreneuron | |
| ==> coreneuron: Executing phase: 'cmake' | |
| ==> coreneuron: Executing phase: 'build' | |
| ==> coreneuron: Executing phase: 'install' | |
| ==> coreneuron: Successfully installed coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh | |
| Fetch: 4.13s. Build: 3m 39.65s. Total: 3m 43.78s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/coreneuron-develop-rjmenm | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563739/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563739/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:38:25 2022 | |
| Hits: 86 / 94 (91.49 %) | |
| Direct: 77 / 94 (81.91 %) | |
| Preprocessed: 9 / 17 (52.94 %) | |
| Misses: 8 | |
| Direct: 17 | |
| Preprocessed: 8 | |
| Uncacheable: 17 | |
| Primary storage: | |
| Hits: 163 / 188 (86.70 %) | |
| Misses: 25 | |
| Cache size (GB): 0.13 / 0.51 (25.54 %) | |
| Files: 1744 | |
| Uncacheable: | |
| Called for linking: 14 | |
| No input file: 3 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887106:step_script [0Ksection_start:1655887106:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:coreneuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=268331 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Acoreneuron%3Anmodl%3Anvhpc%3Aomp-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887113:archive_cache [0Ksection_start:1655887113:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=268919 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272565 responseStatus[0;m=201 Created token[0;m=W7PLLsmx | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=268977 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272565 responseStatus[0;m=201 Created token[0;m=W7PLLsmx | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269028 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272565 responseStatus[0;m=201 Created token[0;m=W7PLLsmx | |
| section_end:1655887114:upload_artifacts_on_success [0Ksection_start:1655887114:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887115:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886676:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886676:resolve_secrets [0Ksection_start:1655886676:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor884222818, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272579 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272579_PROD_P112_CP7_C11 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563725 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272579_PROD_P112_CP7_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563725 --cpus-per-task=8 --mem=76G | |
| section_end:1655886677:prepare_executor [0Ksection_start:1655886677:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1655886680:prepare_script [0Ksection_start:1655886680:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886681:get_sources [0Ksection_start:1655886681:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=188919 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886685:restore_cache [0Ksection_start:1655886685:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (272569)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=189172 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272569 responseStatus[0;m=200 OK token[0;m=myidMhnG | |
| section_end:1655886686:download_artifacts [0Ksection_start:1655886686:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272579/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272579/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272579/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272579/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272579/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272579_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/iw7f7wskesewfnyvmtmk3lfqta3e4jpw | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563725/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563725/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:31:53 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.26 / 0.51 (51.42 %) | |
| Files: 13149 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '5rhr7pzdmuyym5ch4jvmvyd7544mkxl4' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%intel@2021.4.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 5rhr7pz neuron@develop%intel@2021.4.0+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] iw7f7ws ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] 3narjkw ^hpe-mpi@2.25.hmpt%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] podtqd6 ^libsonata-report@1.1.1%intel@2021.4.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ofveh3j ^hdf5@1.10.7%intel@2021.4.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] xys6npz ^pkgconf@1.8.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] e7w5nez ^zlib@1.2.11%intel@2021.4.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] kxkrl2g ^spdlog@1.9.2%intel@2021.4.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] unnpvpo ^fmt@8.1.1%intel@2021.4.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] f27a7nn ^python@3.9.7%intel@2021.4.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] gdhqypa ^reportinglib@2.5.6%intel@2021.4.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] bjxwlfq ^gettext@0.21%intel@2021.4.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] dvyfbbf ^bzip2@1.0.8%intel@2021.4.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] ka2cfu4 ^libiconv@1.16%intel@2021.4.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] w3ob7m2 ^libxml2@2.9.12%intel@2021.4.0~python arch=linux-rhel7-skylake | |
| [^] ahg6hq4 ^xz@5.2.5%intel@2021.4.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] q3rwuez ^ncurses@6.2%intel@2021.4.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] 2fli66n ^tar@1.28%intel@2021.4.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] qj3vvxk ^py-mpi4py@3.1.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 5flpilw ^py-setuptools@57.4.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ipsbwzp ^py-numpy@1.19.5%intel@2021.4.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] rl5ojfn ^intel-mkl@2020.4.304%intel@2021.4.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] taxuisw ^py-cython@0.29.24%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] tzmlo5v ^py-pytest@6.2.4%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] d5szgli ^py-attrs@21.2.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] huky5p4 ^py-iniconfig@1.1.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] wli7caj ^py-packaging@21.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 3a3ralt ^py-pyparsing@2.4.7%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] rh6zvev ^py-pluggy@0.13.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] kpwupa3 ^py-setuptools-scm@6.3.2%intel@2021.4.0+toml arch=linux-rhel7-skylake | |
| [^] apu667d ^py-tomli@1.2.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] jesa65u ^py-pip@21.1.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] skrpmyr ^py-py@1.9.0%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] ktthpzx ^py-toml@0.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] tzl5sq5 ^py-pytest-cov@2.8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] zkd7o6d ^py-coverage@5.5%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-3narjkwjh6i2jr3zl3g5wdjlqi52hkwh) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/pkgconf-1.8.0-xys6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-e7w5nezpwf572epfhbosqfzboztysout) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/fmt-8.1.1-unnpvp | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f27a7nnhppeztxijpispnaedcfo2vjxi) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-dvyfbbfdan33i7wyydyeskb3legztopm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libiconv-1.16-ka2cfu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/xz-5.2.5-ahg6hq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-q3rwuezhc2j56kexunypjpejzketozmc) | |
| [+] /usr (external tar-1.28-2fli66nkkv35g34exwd2xifp5w3gtgo6) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-rl5ojfngtc7sffwyz7v6ek6eceq53wed) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/reportinglib-2.5.6-gdhqyp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/hdf5-1.10.7-ofveh3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/spdlog-1.9.2-kxkrl2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-57.4.0-5flpil | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libxml2-2.9.12-w3ob7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/libsonata-report-1.1.1-podtqd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-cython-0.29.24-taxuis | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-toml-0.10.2-ktthpz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-coverage-5.5-zkd7o6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pip-21.1.2-jesa65 | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-attrs-21.2.0-d5szgl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pyparsing-2.4.7-3a3ral | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-iniconfig-1.1.1-huky5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-mpi4py-3.1.2-qj3vvx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/gettext-0.21-bjxwlf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_intel-2021.4.0-skylake/coreneuron-develop-iw7f7w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-numpy-1.19.5-ipsbwz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-tomli-1.2.1-apu667 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-packaging-21.0-wli7ca | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-setuptools-scm-6.3.2-kpwupa | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pluggy-0.13.0-rh6zve | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-py-1.9.0-skrpmy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-6.2.4-tzmlo5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_intel-2021.4.0-skylake/py-pytest-cov-2.8.1-tzl5sq | |
| ==> Installing neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 | |
| ==> No binary for neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 found: installing from source | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4 | |
| Fetch: 25.20s. Build: 11m 59.35s. Total: 12m 24.55s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_intel-2021.4.0-skylake/neuron-develop-5rhr7p | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563725/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563725/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:45:11 2022 | |
| Hits: 710 / 808 (87.87 %) | |
| Direct: 334 / 818 (40.83 %) | |
| Preprocessed: 376 / 478 (78.66 %) | |
| Misses: 98 | |
| Direct: 484 | |
| Preprocessed: 102 | |
| Uncacheable: 133 | |
| Primary storage: | |
| Hits: 1345 / 1630 (82.52 %) | |
| Misses: 285 | |
| Cache size (GB): 0.27 / 0.51 (52.96 %) | |
| Files: 13341 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 109 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887512:step_script [0Ksection_start:1655887512:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=224398 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Aintel-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887525:archive_cache [0Ksection_start:1655887525:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=225686 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272579 responseStatus[0;m=201 Created token[0;m=nyWmD2tP | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=225760 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272579 responseStatus[0;m=201 Created token[0;m=nyWmD2tP | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=225862 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272579 responseStatus[0;m=201 Created token[0;m=nyWmD2tP | |
| section_end:1655887527:upload_artifacts_on_success [0Ksection_start:1655887527:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887528:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886711:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886711:resolve_secrets [0Ksection_start:1655886711:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor018319654, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272574 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272574_PROD_P112_CP4_C8 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563732 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272574_PROD_P112_CP4_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563732 --cpus-per-task=8 --mem=76G | |
| section_end:1655886715:prepare_executor [0Ksection_start:1655886715:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n28 via bbpv1.epfl.ch... | |
| section_end:1655886717:prepare_script [0Ksection_start:1655886717:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886718:get_sources [0Ksection_start:1655886718:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169933 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886722:restore_cache [0Ksection_start:1655886722:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (272561)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=170117 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272561 responseStatus[0;m=200 OK token[0;m=vewM1syi | |
| section_end:1655886723:download_artifacts [0Ksection_start:1655886723:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272574/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272574/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272574/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272574/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272574/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272574_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/6qi7xiczl6qfolioernjyooskeukbk4m | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be mqy2bmic4al44uogrem4llrvfdch65dy | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563732/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563732/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:32:28 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.39 / 0.51 (75.51 %) | |
| Files: 10862 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'mqy2bmic4al44uogrem4llrvfdch65dy' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - mqy2bmi neuron@develop%nvhpc@22.3+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] 6qi7xic ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi~nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] pjmdwuu ^hpe-mpi@2.25.hmpt%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 6d2jeoj ^libsonata-report@1.1.1%nvhpc@22.3~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] tbfoeg7 ^hdf5@1.10.7%nvhpc@22.3+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 6dfyugs ^pkgconf@1.8.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] h7lotu6 ^zlib@1.2.11%nvhpc@22.3+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] v5zxpfc ^spdlog@1.9.2%nvhpc@22.3~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jeloytj ^fmt@8.1.1%nvhpc@22.3~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [^] f62u3oh ^python@3.9.7%nvhpc@22.3+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] bdkvweu ^reportinglib@2.5.6%nvhpc@22.3~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] lswrnpk ^gettext@0.21%nvhpc@22.3+bzip2+curses+git~libunistring+libxml2+tar+xz patches=6e530daaae14725d578d6cafbf7d523accc9ed29fd817bd421cf98a5f51e9e1b,bbe9f0539aa504966ac104224d25a9260faa1015ed3adda936467be9c7de4eae,fb27a3fb5e414bdc50ffebbbe2da986473df70a493caa4396226f51a67c55424 arch=linux-rhel7-skylake | |
| [^] h3k3sur ^bzip2@1.0.8%nvhpc@22.3~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] f4hjvxq ^libiconv@1.16%nvhpc@22.3 libs=shared,static arch=linux-rhel7-skylake | |
| [^] i3pi6vv ^libxml2@2.9.12%nvhpc@22.3~python patches=05ff238cf435825ef835c7ae39376b52dc83d8caf19e962f0766c841386a305a,10a88ad47f9797cf7cf2d7d07241f665a3b6d1f31fa026728c8c2ae93e1664e9 arch=linux-rhel7-skylake | |
| [^] cqwvvjz ^xz@5.2.5%nvhpc@22.3~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] jpe3but ^ncurses@6.2%nvhpc@22.3~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] zmpra4b ^tar@1.28%nvhpc@22.3 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] v2mlx7s ^py-mpi4py@3.1.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] l4z6bjq ^py-setuptools@57.4.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] kohlctm ^py-numpy@1.17.5%gcc@11.2.0+blas+lapack patches=cf407c1024b0878c4222dd352aa9dece412073bb15b138243a2893725434c7b6 arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] dzkzhqs ^py-pytest@6.2.4%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] iopgs7j ^py-attrs@21.2.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] prphkb7 ^py-iniconfig@1.1.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] iwg6vas ^py-packaging@21.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] o7j2crb ^py-pyparsing@2.4.7%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] uecslka ^py-pluggy@0.13.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] fjgegze ^py-setuptools-scm@6.3.2%nvhpc@22.3+toml arch=linux-rhel7-skylake | |
| [^] xsvykjn ^py-tomli@1.2.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] w6kat5w ^py-pip@21.1.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] qhehf4e ^py-py@1.9.0%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] yg6s277 ^py-toml@0.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] l6udtg7 ^py-pytest-cov@2.8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] lfjn2o4 ^py-coverage@5.5%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-pjmdwuu36ioiwqyrg6lrj7nrq3waqjj2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/pkgconf-1.8.0-6dfyug | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-h7lotu6jszcvumwucry2y5jnhvxw5x2d) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/fmt-8.1.1-jeloyt | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-f62u3ohchswt5q2b63chawohzqrl6wvy) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-h3k3surwc24macvlxbcme35uztk6dqiw) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libiconv-1.16-f4hjvx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/xz-5.2.5-cqwvvj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-jpe3butfegqspi6dnm7cyikpjt5nphfo) | |
| [+] /usr (external tar-1.28-zmpra4bla6bcjnayn6eze4rnd5u4txfm) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/reportinglib-2.5.6-bdkvwe | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/hdf5-1.10.7-tbfoeg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/spdlog-1.9.2-v5zxpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-setuptools-57.4.0-l4z6bj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libxml2-2.9.12-i3pi6v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/libsonata-report-1.1.1-6d2jeo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.17.5-kohlct | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-toml-0.10.2-yg6s27 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-mpi4py-3.1.2-v2mlx7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-iniconfig-1.1.1-prphkb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pyparsing-2.4.7-o7j2cr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-coverage-5.5-lfjn2o | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pip-21.1.2-w6kat5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-attrs-21.2.0-iopgs7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/gettext-0.21-lswrnp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/coreneuron-develop-6qi7xi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-packaging-21.0-iwg6va | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-tomli-1.2.1-xsvykj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-setuptools-scm-6.3.2-fjgegz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-py-1.9.0-qhehf4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pluggy-0.13.0-uecslk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pytest-6.2.4-dzkzhq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_nvhpc-22.3-skylake/py-pytest-cov-2.8.1-l6udtg | |
| ==> Installing neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy | |
| ==> No binary for neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy | |
| Fetch: 13.63s. Build: 14m 12.38s. Total: 14m 26.01s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/neuron-develop-mqy2bm | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563732/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563732/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:47:45 2022 | |
| Hits: 710 / 807 (87.98 %) | |
| Direct: 334 / 817 (40.88 %) | |
| Preprocessed: 376 / 477 (78.83 %) | |
| Misses: 97 | |
| Direct: 483 | |
| Preprocessed: 101 | |
| Uncacheable: 125 | |
| Primary storage: | |
| Hits: 1345 / 1628 (82.62 %) | |
| Misses: 283 | |
| Cache size (GB): 0.39 / 0.51 (75.74 %) | |
| Files: 11052 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 101 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655887666:step_script [0Ksection_start:1655887666:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:mod2c:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=198795 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Amod2c%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655887683:archive_cache [0Ksection_start:1655887683:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=198886 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272574 responseStatus[0;m=201 Created token[0;m=SFnJvts6 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=198927 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272574 responseStatus[0;m=201 Created token[0;m=SFnJvts6 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=198970 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272574 responseStatus[0;m=201 Created token[0;m=SFnJvts6 | |
| section_end:1655887685:upload_artifacts_on_success [0Ksection_start:1655887685:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887685:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886948:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886948:resolve_secrets [0Ksection_start:1655886948:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor323969639, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272581 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272581_PROD_P112_CP9_C6 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563749 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272581_PROD_P112_CP9_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563749 --cpus-per-task=8 --mem=76G | |
| section_end:1655886956:prepare_executor [0Ksection_start:1655886956:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655886959:prepare_script [0Ksection_start:1655886959:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886960:get_sources [0Ksection_start:1655886960:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=261621 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886965:restore_cache [0Ksection_start:1655886965:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (272572)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=262200 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272572 responseStatus[0;m=200 OK token[0;m=mjvHJvjk | |
| section_end:1655886966:download_artifacts [0Ksection_start:1655886966:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272581/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272581/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272581/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272581/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272581/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272581_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%intel +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/rh5oq7ygplbbyryh6avavlwff7ieo23w | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563749/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563749/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:36:31 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.34 / 0.51 (66.96 %) | |
| Files: 15837 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%intel+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - jhl3fvx neuron@develop%intel@2021.4.0+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - dwdch6b ^bison@3.8.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| - z3q5f3x ^cmake@3.21.4%intel@2021.4.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] rh5oq7y ^coreneuron@develop%intel@2021.4.0~caliper~codegenopt~gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=Debug arch=linux-rhel7-skylake | |
| [^] dl7pfht ^boost@1.78.0%intel@2021.4.0+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - s4ueg72 ^flex@2.6.3%intel@2021.4.0+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - 6ggc5yr ^ninja@1.10.2%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5abs2t7 ^readline@8.1%intel@2021.4.0 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-dwdch6bmdeclr2novthsywtrryotawwz) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-z3q5f3xwpuibd3qbgdscqmu3efarbu42) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-dl7pfhtsvyaq3273gr2g3l5vr37eeydc) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-s4ueg72j7l6vkdyvfxj2tweo7v7s3otx) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-6ggc5yre7qddwxdjmn7sfptpdoiy4dtp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-5abs2t7f6dtgbejv6kjzd4gjwhdlr7qr) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_intel-2021.4.0-skylake/coreneuron-develop-rh5oq7 | |
| ==> Installing neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn | |
| ==> No binary for neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn | |
| Fetch: 27.91s. Build: 22m 14.09s. Total: 22m 42.00s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_intel-2021.4.0-skylake/neuron-develop-jhl3fv | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563749/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563749/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 11:00:13 2022 | |
| Hits: 695 / 793 (87.64 %) | |
| Direct: 168 / 803 (20.92 %) | |
| Preprocessed: 527 / 629 (83.78 %) | |
| Misses: 98 | |
| Direct: 635 | |
| Preprocessed: 102 | |
| Uncacheable: 129 | |
| Primary storage: | |
| Hits: 1164 / 1600 (72.75 %) | |
| Misses: 436 | |
| Cache size (GB): 0.35 / 0.51 (67.56 %) | |
| Files: 16174 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 105 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655888417:step_script [0Ksection_start:1655888417:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:intel-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=299485 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Aintel-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655888432:archive_cache [0Ksection_start:1655888432:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=299633 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272581 responseStatus[0;m=201 Created token[0;m=ZLXYD-d_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=299675 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272581 responseStatus[0;m=201 Created token[0;m=ZLXYD-d_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=299717 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272581 responseStatus[0;m=201 Created token[0;m=ZLXYD-d_ | |
| section_end:1655888434:upload_artifacts_on_success [0Ksection_start:1655888434:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888435:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887120:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887120:resolve_secrets [0Ksection_start:1655887120:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor130627239, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272577 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272577_PROD_P112_CP12_C4 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563757 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272577_PROD_P112_CP12_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563757 --cpus-per-task=8 --mem=76G | |
| section_end:1655887123:prepare_executor [0Ksection_start:1655887123:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655887126:prepare_script [0Ksection_start:1655887126:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887126:get_sources [0Ksection_start:1655887126:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=270784 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655887131:restore_cache [0Ksection_start:1655887131:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (272567)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=271452 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272567 responseStatus[0;m=200 OK token[0;m=cPTxqcyz | |
| section_end:1655887132:download_artifacts [0Ksection_start:1655887132:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272577/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272577/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272577/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272577/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272577/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272577_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/6q3vzbkyvzxputeeg6himnv7tcfu7ge7 | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be f6nikkkl3jokiiz56xke2nvdgfsrjose | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563757/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563757/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:39:25 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.36 / 0.51 (70.94 %) | |
| Files: 14131 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: 'f6nikkkl3jokiiz56xke2nvdgfsrjose' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - f6nikkk neuron@develop%nvhpc@22.3+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] 6q3vzbk ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl~openmp~profile+report+shared+sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/coreneuron-develop-6q3vzb | |
| ==> Installing neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose | |
| ==> No binary for neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose | |
| Fetch: 25.45s. Build: 37m 0.75s. Total: 37m 26.20s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/neuron-develop-f6nikk | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563757/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563757/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 11:18:30 2022 | |
| Hits: 695 / 792 (87.75 %) | |
| Direct: 165 / 802 (20.57 %) | |
| Preprocessed: 530 / 631 (83.99 %) | |
| Misses: 97 | |
| Direct: 637 | |
| Preprocessed: 101 | |
| Uncacheable: 122 | |
| Primary storage: | |
| Hits: 1161 / 1598 (72.65 %) | |
| Misses: 437 | |
| Cache size (GB): 0.37 / 0.51 (71.69 %) | |
| Files: 14475 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 98 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655889511:step_script [0Ksection_start:1655889511:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18178 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655889527:archive_cache [0Ksection_start:1655889527:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18283 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272577 responseStatus[0;m=201 Created token[0;m=BqwBC8nC | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18330 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272577 responseStatus[0;m=201 Created token[0;m=BqwBC8nC | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18380 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272577 responseStatus[0;m=201 Created token[0;m=BqwBC8nC | |
| section_end:1655889529:upload_artifacts_on_success [0Ksection_start:1655889529:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655889530:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887116:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887116:resolve_secrets [0Ksection_start:1655887116:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor153598121, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272575 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272575_PROD_P112_CP2_C2 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563755 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272575_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563755 --cpus-per-task=8 --mem=76G | |
| section_end:1655887118:prepare_executor [0Ksection_start:1655887118:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655887120:prepare_script [0Ksection_start:1655887120:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887121:get_sources [0Ksection_start:1655887121:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=270003 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655887126:restore_cache [0Ksection_start:1655887126:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (272565)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=270622 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272565 responseStatus[0;m=200 OK token[0;m=W7PLLsmx | |
| section_end:1655887126:download_artifacts [0Ksection_start:1655887126:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272575/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272575/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272575/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272575/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272575/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272575_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc +coreneuron+debug+tests~legacy-unit~rx3d model_tests=channel-benchmark,olfactory,tqperf-heavy ^/rjmenmrpgml6pswauzum5llfbry6ngnh | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 2supl4esjx3ghhb3azj32rf6llwrd6wk | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563755/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563755/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:39:14 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.39 / 0.51 (76.03 %) | |
| Files: 13350 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '2supl4esjx3ghhb3azj32rf6llwrd6wk' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+coreneuron+debug~legacy-unit~rx3d+tests model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 2supl4e neuron@develop%nvhpc@22.3+binary~caliper+coreneuron+debug~interviews~ipo+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~profile+python~rx3d+tests build_type=RelWithDebInfo model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04826b394a858069d93e8c08e1e81e914c23e1ef3da0486e8233834ff6c sanitizers=None arch=linux-rhel7-skylake | |
| - 6s6wcfe ^bison@3.8.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| - ucwiakr ^cmake@3.21.4%nvhpc@22.3~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [+] rjmenmr ^coreneuron@develop%nvhpc@22.3~caliper~codegenopt+gpu~ipo~ispc~knl~legacy-unit+mpi+nmodl+openmp~profile+report+shared~sympy~sympyopt+tests~unified build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vn2t5vi ^boost@1.78.0%nvhpc@22.3+atomic+chrono~clanglibcpp~container~context~coroutine+date_time~debug+exception~fiber+filesystem+graph~icu+iostreams+locale+log+math~mpi+multithreaded~numpy+pic+program_options~python+random+regex+serialization+shared+signals~singlethreaded+system~taggedlayout+test+thread+timer~versionedlayout+wave cxxstd=98 visibility=hidden arch=linux-rhel7-skylake | |
| [^] gi5x2dn ^cuda@11.6.1%nvhpc@22.3~allow-unsupported-compilers~dev arch=linux-rhel7-skylake | |
| [^] hyunzkn ^hpe-mpi@2.25.hmpt%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] lbajih4 ^libsonata-report@1.1.1%gcc@11.2.0~ipo+mpi build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] utj47fz ^hdf5@1.10.7%gcc@11.2.0+cxx~fortran+hl~ipo~java+mpi+shared~szip~threadsafe+tools api=default build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ihxi5rl ^pkgconf@1.8.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] evtnqzd ^zlib@1.2.11%gcc@11.2.0+optimize+pic+shared arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| [+] 4dzxcps ^nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 5fkun4i ^reportinglib@2.5.6%gcc@11.2.0~ipo~profile+shared~tests build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - ajxdymq ^flex@2.6.3%nvhpc@22.3+lex~nls arch=linux-rhel7-skylake | |
| [^] iu2b5hx ^gettext@0.21%gcc@11.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz arch=linux-rhel7-skylake | |
| [^] 3rmq3zx ^bzip2@1.0.8%gcc@11.2.0~debug~pic+shared arch=linux-rhel7-skylake | |
| [^] hxxlexb ^libiconv@1.16%gcc@11.2.0 libs=shared,static arch=linux-rhel7-skylake | |
| [^] dnxqn2k ^libxml2@2.9.12%gcc@11.2.0~python arch=linux-rhel7-skylake | |
| [^] jzpqn5y ^xz@5.2.5%gcc@11.2.0~pic libs=shared,static arch=linux-rhel7-skylake | |
| [^] ams67cx ^ncurses@6.2%gcc@11.2.0~symlinks+termlib abi=none arch=linux-rhel7-skylake | |
| [^] ir7xtbl ^tar@1.28%gcc@11.2.0 patches=08921fcbd732050c74ddf1de7d8ad95ffdbc09f8b4342456fa2f6a0dd02a957c,125cd6142fac2cc339e9aebfe79e40f90766022b8e8401532b1729e84fc148c2,5c314db58d005043bf407abaf25eb9823b9032a22fd12a0b142d4bf548130fa4,d428578be7fb99b831eb61e53b8d88a859afe08b479a21238180899707d79ce4 arch=linux-rhel7-skylake | |
| - cp3ofsp ^ninja@1.10.2%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [^] n6q4vfz ^py-mpi4py@3.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] gjm7kkq ^py-numpy@1.19.5%gcc@11.2.0+blas+lapack patches=8a9d5d1b3f145c043b8b04869e7d46c6ff95c3f486d84f69693017c7e6190c7d arch=linux-rhel7-skylake | |
| [^] r5cvgru ^intel-mkl@2020.4.304%gcc@11.2.0~ilp64+shared threads=none arch=linux-rhel7-skylake | |
| [^] h2fsi6i ^py-cython@0.29.24%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] q5n7ofc ^py-pytest-cov@2.8.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] fudvy5v ^py-coverage@5.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 3333cwm ^readline@8.1%nvhpc@22.3 arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-6s6wcfeanp2mkdib4c3n3ivkcuosopgm) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-ucwiakreeghdgbo22kbqqhgnnlwxqtnn) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/boost-1.78.0-hiorc7 (external boost-1.78.0-vn2t5viljvtb5wyfhgmx57txyeiznxo4) | |
| ==> cuda@11.6.1 : has external module in ['cuda/11.6.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cuda-11.6.1-ngetva (external cuda-11.6.1-gi5x2dn47i7nv76flbq7aatllxpaqmjp) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/hpe-mpi-2.25.hmpt-4ukyxt (external hpe-mpi-2.25.hmpt-hyunzknktdzri34bx26bupkvapehonql) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/pkgconf-1.8.0-ihxi5r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/zlib-1.2.11-mswjss (external zlib-1.2.11-evtnqzdtuvprwnbd2nljimpzywrhw4uo) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-ajxdymqhnzqgeuhvk5nu5zfymzq35n6i) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bzip2-1.0.8-eu2d6e (external bzip2-1.0.8-3rmq3zxuntsiphthnvty6gtydbmbkwr5) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libiconv-1.16-hxxlex | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/xz-5.2.5-jzpqn5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ncurses-6.2-nsve5x (external ncurses-6.2-ams67cxbq5vc7wiay2ndr2ksce2igbfw) | |
| [+] /usr (external tar-1.28-ir7xtblauhq3vtkpjrl7ou3nzevcsi3u) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-cp3ofspgkdqaqih5vrhotmdwvkozfswp) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/intel-mkl-2020.4.304-rzr3hj (external intel-mkl-2020.4.304-r5cvgrurdnt6y267arsmmmgqi75ouxd2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/readline-8.1-we2frg (external readline-8.1-3333cwmykvahrsdydir4qeyasic3liq6) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/reportinglib-2.5.6-5fkun4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/hdf5-1.10.7-utj47f | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libxml2-2.9.12-dnxqn2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libsonata-report-1.1.1-lbajih | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpi4py-3.1.2-n6q4vf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-cython-0.29.24-h2fsi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-coverage-5.5-fudvy5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/gettext-0.21-iu2b5h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-numpy-1.19.5-gjm7kk | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-cov-2.8.1-q5n7of | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/coreneuron-develop-rjmenm | |
| ==> Installing neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk | |
| ==> No binary for neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk | |
| Fetch: 26.78s. Build: 37m 7.94s. Total: 37m 34.71s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_nvhpc-22.3-skylake/neuron-develop-2supl4 | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/563755/ccache | |
| Primary config: /nvme/bbpcihpcproj12/563755/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 11:18:30 2022 | |
| Hits: 695 / 792 (87.75 %) | |
| Direct: 167 / 802 (20.82 %) | |
| Preprocessed: 528 / 629 (83.94 %) | |
| Misses: 97 | |
| Direct: 635 | |
| Preprocessed: 101 | |
| Uncacheable: 122 | |
| Primary storage: | |
| Hits: 1163 / 1598 (72.78 %) | |
| Misses: 435 | |
| Cache size (GB): 0.39 / 0.51 (76.74 %) | |
| Files: 13692 | |
| Uncacheable: | |
| Autoconf compile/link: 7 | |
| Called for linking: 98 | |
| Called for preprocessing: 1 | |
| Compilation failed: 4 | |
| No input file: 6 | |
| Preprocessing failed: 6 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655889511:step_script [0Ksection_start:1655889511:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18130 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655889528:archive_cache [0Ksection_start:1655889528:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18436 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272575 responseStatus[0;m=201 Created token[0;m=pexsvbLh | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18483 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272575 responseStatus[0;m=201 Created token[0;m=pexsvbLh | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=18528 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272575 responseStatus[0;m=201 Created token[0;m=pexsvbLh | |
| section_end:1655889530:upload_artifacts_on_success [0Ksection_start:1655889530:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655889531:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886529:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886529:resolve_secrets [0Ksection_start:1655886529:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor531322231, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272559 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag | |
| A slurm job will be created with name GL_J272559_PROD_P112_CP2_C2 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563713 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J272559_PROD_P112_CP2_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=2 --jobid=563713 --cpus-per-task=8 --mem=76G | |
| section_end:1655886533:prepare_executor [0Ksection_start:1655886533:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n23 via bbpv1.epfl.ch... | |
| section_end:1655886536:prepare_script [0Ksection_start:1655886536:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886536:get_sources [0Ksection_start:1655886536:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for build:nmodl-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=200449 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1655886541:restore_cache [0Ksection_start:1655886541:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for spack_setup (272556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=201590 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272556 responseStatus[0;m=200 OK token[0;m=uHoCNEmA | |
| section_end:1655886542:download_artifacts [0Ksection_start:1655886542:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272559/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272559/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272559/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272559/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272559/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:6 module_roots: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 tcl: $user_cache_path/modules | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 environments: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:10 root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:88 concretization: separately | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:12 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Temporary locations Spack can try to use for builds. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Recommended options are given below. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Builds can be faster in temporary directories on some (e.g., HPC) systems. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Specifying `$tempdir` will ensure use of the default temporary directory | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # (i.e., ``$TMP` or ``$TMPDIR``). | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # Another option that prevents conflicts and potential permission issues is | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # to specify `$user_cache_path/stage`, which ensures each user builds in their | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # home directory. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # A more traditional path uses the value of `$spack/var/spack/stage`, which | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # builds directly inside Spack's instance without staging them in a | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # temporary space. Problems with specifying a path inside a Spack instance | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # are that it precludes its use as a system package and its ability to be | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # pip installable. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # In any case, if the username is not already in the path, Spack will append | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # the value of `$user` in an attempt to avoid potential conflicts between | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # users in shared temporary spaces. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # The build stage can be purged with `spack clean --stage` and | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # `spack clean -a`, so it is important that the specified directory uniquely | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:38 # identifies Spack staging to avoid accidentally wiping out non-Spack work. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:73 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:82 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:94 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:99 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:107 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:113 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:118 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:123 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:128 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:136 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:145 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:150 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:176 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:183 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:191 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:197 shared_linking: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:202 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556/spack/etc/spack/defaults/config.yaml:207 terminal_title: False | |
| _builtin debug: False | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272559_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ JSON_SPEC=$(spack spec --json ${SPACK_FULL_SPEC})[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(module load unstable python; echo "${JSON_SPEC}" | python -c "import json, sys; print(json.loads(sys.stdin.read())[\"spec\"][\"nodes\"][0][\"hash\"])")[0;m | |
| [32;1m$ echo "Determined its hash will be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined its hash will be 4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563713/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563713/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:29:24 2022 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.43 / 0.51 (84.03 %) | |
| Files: 490 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack uninstall -y --dependents /${SPACK_INSTALLED_HASH} || true[0;m | |
| ==> Error: No installed spec matches the hash: '4dzxcpsuksxgtuoesheax4sf76wrhkqb' | |
| [32;1m$ spack spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - 4dzxcps nmodl@develop%gcc@11.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - cppb7al ^bison@3.8.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] atktt2p ^catch2@2.13.8%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 2qmvlfy ^cmake@3.21.4%gcc@11.2.0~doc+ncurses+openssl+ownlibs~qt build_type=Release arch=linux-rhel7-skylake | |
| [^] e5qqxxq ^cli11@2.1.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| - 4bt76dp ^flex@2.6.3%gcc@11.2.0+lex~nls arch=linux-rhel7-skylake | |
| [^] 7lotjqk ^fmt@8.1.1%gcc@11.2.0~ipo+pic~shared build_type=RelWithDebInfo cxxstd=11 arch=linux-rhel7-skylake | |
| - utrxbc3 ^ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] jjl6cjc ^nlohmann-json@3.10.4%gcc@11.2.0~ipo~multiple_headers build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] onq3mhg ^py-jinja2@3.0.1%gcc@11.2.0~i18n arch=linux-rhel7-skylake | |
| [^] 4ectow5 ^py-markupsafe@2.0.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] v4z3s5e ^py-setuptools@57.4.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 72xzp3v ^python@3.9.7%gcc@11.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib patches=0d98e93189bc278fbc37a50ed7f183bd8aaf249a8e1670a465f0db6bb4f8cf87,4c2457325f2b608b1b6a2c63087df8c26e07db3e3d493caf36a56f0ecf6fb768,f2fd060afc4b4618fe8104c4c5d771f36dc55b1db5a4623785a4ea707ec72fb4 arch=linux-rhel7-skylake | |
| [^] z5kzef6 ^py-pybind11@2.9.1%gcc@11.2.0~ipo build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 22arfs4 ^py-pytest@6.2.4%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ascbeii ^py-attrs@21.2.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] kvw3vhm ^py-iniconfig@1.1.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] 7iyiygo ^py-packaging@21.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] c7qvw2q ^py-pyparsing@2.4.7%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] mazoiox ^py-pluggy@0.13.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ciusbmc ^py-setuptools-scm@6.3.2%gcc@11.2.0+toml arch=linux-rhel7-skylake | |
| [^] hmcew6w ^py-tomli@1.2.1%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] sxd7srs ^py-pip@21.1.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] y7rfzdj ^py-py@1.9.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] w4gddqx ^py-toml@0.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] ci5oe5b ^py-pyyaml@5.3.1%gcc@11.2.0+libyaml arch=linux-rhel7-skylake | |
| [^] xj2wlac ^libyaml@0.2.5%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] vt2or7v ^py-sympy@1.9%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] dzb2mfs ^py-mpmath@1.1.0%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [^] r74vcyb ^spdlog@1.9.2%gcc@11.2.0~ipo+shared build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ spack ${SPACK_INSTALL_EXTRA_FLAGS} install -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/bison-3.8.2-ej2cew (external bison-3.8.2-cppb7alftvhxbedsuxqv72z2thjuoizw) | |
| ==> cmake@3.21.4 : has external module in ['cmake/3.21.4'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/cmake-3.21.4-cdyb7k (external cmake-3.21.4-2qmvlfyylrv3t5ankluyr5cqey2nlfzd) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/flex-2.6.3-3mtl7j (external flex-2.6.3-4bt76dpxbix6ep4qtz3mv5i2iddilv53) | |
| ==> ninja@1.10.2 : has external module in ['ninja/1.10.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ninja-1.10.2-eh33rh (external ninja-1.10.2-utrxbc3aohnru5eynalc3hyv4ca4jqte) | |
| ==> python@3.9.7 : has external module in ['python/3.9.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/python-3.9.7-yj5alh (external python-3.9.7-72xzp3vgzh5b424qevkfruhs3ajzqbiy) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/libyaml-0.2.5-xj2wla | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/cli11-2.1.1-e5qqxx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/fmt-8.1.1-7lotjq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/catch2-2.13.8-atktt2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/nlohmann-json-3.10.4-jjl6cj | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-mpmath-1.1.0-dzb2mf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-57.4.0-v4z3s5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyyaml-5.3.1-ci5oe5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/spdlog-1.9.2-r74vcy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-sympy-1.9-vt2or7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-toml-0.10.2-w4gddq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-markupsafe-2.0.1-4ectow | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-attrs-21.2.0-ascbei | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pip-21.1.2-sxd7sr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-iniconfig-1.1.1-kvw3vh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pybind11-2.9.1-z5kzef | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pyparsing-2.4.7-c7qvw2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-jinja2-3.0.1-onq3mh | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-tomli-1.2.1-hmcew6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-packaging-21.0-7iyiyg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-setuptools-scm-6.3.2-ciusbm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-py-1.9.0-y7rfzd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pluggy-0.13.0-mazoio | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_applications/install_gcc-11.2.0-skylake/py-pytest-6.2.4-22arfs | |
| ==> Installing nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| ==> No binary for nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb found: installing from source | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704, but it is owned by 0 | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-4dzxcpsuksxgtuoesheax4sf76wrhkqb | |
| Fetch: 57.44s. Build: 1m 32.70s. Total: 2m 30.13s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/software/install_gcc-11.2.0-skylake/nmodl-develop-4dzxcp | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563713/ccache | |
| Primary config: /gpfs/bbp.cscs.ch/ssd/slurmTmpFS/bbpcihpcproj12/563713/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2022-01-10/stage_externals/install_gcc-11.2.0-skylake/ccache-4.4.2-6qbndl/etc/ccache.conf | |
| Stats updated: Wed Jun 22 10:32:50 2022 | |
| Hits: 129 / 131 (98.47 %) | |
| Direct: 28 / 131 (21.37 %) | |
| Preprocessed: 101 / 103 (98.06 %) | |
| Misses: 2 | |
| Direct: 103 | |
| Preprocessed: 2 | |
| Uncacheable: 26 | |
| Primary storage: | |
| Hits: 157 / 262 (59.92 %) | |
| Misses: 105 | |
| Cache size (GB): 0.43 / 0.51 (84.05 %) | |
| Files: 494 | |
| Uncacheable: | |
| Called for linking: 25 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1655886771:step_script [0Ksection_start:1655886771:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache build:nmodl-8-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=210094 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/112/build%3Anmodl-8-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1655886790:archive_cache [0Ksection_start:1655886790:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=210182 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272559 responseStatus[0;m=201 Created token[0;m=TUUbHxzw | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=210219 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272559 responseStatus[0;m=201 Created token[0;m=TUUbHxzw | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=210262 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272559 responseStatus[0;m=201 Created token[0;m=TUUbHxzw | |
| section_end:1655886791:upload_artifacts_on_success [0Ksection_start:1655886791:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886792:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ! |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886445:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886445:resolve_secrets [0Ksection_start:1655886445:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor556265222, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272556 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag | |
| A slurm job will be created with name GL_J272556_PROD_P112_CP1_C7 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563710 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J272556_PROD_P112_CP1_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=1 --jobid=563710 --cpus-per-task=6 --mem=30750M | |
| section_end:1655886449:prepare_executor [0Ksection_start:1655886449:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r2i5n23 via bbpv1.epfl.ch... | |
| section_end:1655886450:prepare_script [0Ksection_start:1655886450:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886451:get_sources [0Ksection_start:1655886451:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| if ref_type not in {'branch', 'tag', 'ref'}: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| Autoloading python/3.9.7 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272556 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 6% (630/9129) Updating files: 7% (640/9129) Updating files: 8% (731/9129) Updating files: 9% (822/9129) Updating files: 10% (913/9129) Updating files: 11% (1005/9129) Updating files: 12% (1096/9129) Updating files: 13% (1187/9129) Updating files: 14% (1279/9129) Updating files: 15% (1370/9129) Updating files: 16% (1461/9129) Updating files: 17% (1552/9129) Updating files: 17% (1579/9129) Updating files: 18% (1644/9129) Updating files: 19% (1735/9129) Updating files: 20% (1826/9129) Updating files: 21% (1918/9129) Updating files: 22% (2009/9129) Updating files: 23% (2100/9129) Updating files: 24% (2191/9129) Updating files: 25% (2283/9129) Updating files: 25% (2285/9129) Updating files: 26% (2374/9129) Updating files: 27% (2465/9129) Updating files: 28% (2557/9129) Updating files: 29% (2648/9129) Updating files: 30% (2739/9129) Updating files: 31% (2830/9129) Updating files: 32% (2922/9129) Updating files: 33% (3013/9129) Updating files: 34% (3104/9129) Updating files: 34% (3142/9129) Updating files: 35% (3196/9129) Updating files: 36% (3287/9129) Updating files: 37% (3378/9129) Updating files: 38% (3470/9129) Updating files: 39% (3561/9129) Updating files: 40% (3652/9129) Updating files: 41% (3743/9129) Updating files: 42% (3835/9129) Updating files: 43% (3926/9129) Updating files: 44% (4017/9129) Updating files: 45% (4109/9129) Updating files: 46% (4200/9129) Updating files: 47% (4291/9129) Updating files: 47% (4315/9129) Updating files: 48% (4382/9129) Updating files: 49% (4474/9129) Updating files: 50% (4565/9129) Updating files: 51% (4656/9129) Updating files: 52% (4748/9129) Updating files: 53% (4839/9129) Updating files: 54% (4930/9129) Updating files: 55% (5021/9129) Updating files: 56% (5113/9129) Updating files: 57% (5204/9129) Updating files: 58% (5295/9129) Updating files: 59% (5387/9129) Updating files: 60% (5478/9129) Updating files: 61% (5569/9129) Updating files: 62% (5660/9129) Updating files: 62% (5733/9129) Updating files: 63% (5752/9129) Updating files: 64% (5843/9129) Updating files: 65% (5934/9129) Updating files: 66% (6026/9129) Updating files: 67% (6117/9129) Updating files: 68% (6208/9129) Updating files: 69% (6300/9129) Updating files: 70% (6391/9129) Updating files: 71% (6482/9129) Updating files: 72% (6573/9129) Updating files: 72% (6634/9129) Updating files: 73% (6665/9129) Updating files: 74% (6756/9129) Updating files: 75% (6847/9129) Updating files: 76% (6939/9129) Updating files: 77% (7030/9129) Updating files: 78% (7121/9129) Updating files: 79% (7212/9129) Updating files: 80% (7304/9129) Updating files: 81% (7395/9129) Updating files: 82% (7486/9129) Updating files: 82% (7514/9129) Updating files: 83% (7578/9129) Updating files: 84% (7669/9129) Updating files: 85% (7760/9129) Updating files: 86% (7851/9129) Updating files: 87% (7943/9129) Updating files: 88% (8034/9129) Updating files: 89% (8125/9129) Updating files: 90% (8217/9129) Updating files: 91% (8308/9129) Updating files: 92% (8399/9129) Updating files: 93% (8490/9129) Updating files: 94% (8582/9129) Updating files: 95% (8673/9129) Updating files: 96% (8764/9129) Updating files: 97% (8856/9129) Updating files: 97% (8861/9129) Updating files: 98% (8947/9129) Updating files: 99% (9038/9129) Updating files: 100% (9129/9129) Updating files: 100% (9129/9129), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704/J272556_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=pramodk/omp-simd GITLAB_PIPELINES_BRANCH=main NEURON_BRANCH=master NMODL_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master CORENEURON_COMMIT=6f9c31e54f65ead9165e43fe268144873a37c0c1 | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=pramodk/omp-simd | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> neuron: resolved branch master to f242cc8d4ddefb74f71f7f613a4b7b4043c2b641 | |
| ==> nmodl: resolved branch master to 426b508730185f8d3475c63b9d5a1aba02be9848 | |
| ==> neuron@develop: remove branch/commit/tag | |
| ==> neuron@develop: use commit="f242cc8d4ddefb74f71f7f613a4b7b4043c2b641" | |
| ==> neuron@develop: add preferred=True | |
| ==> nmodl@develop: remove branch/commit/tag | |
| ==> nmodl@develop: use commit="426b508730185f8d3475c63b9d5a1aba02be9848" | |
| ==> nmodl@develop: add preferred=True | |
| ==> coreneuron@develop: remove branch/commit/tag | |
| ==> coreneuron@develop: use commit="6f9c31e54f65ead9165e43fe268144873a37c0c1" | |
| ==> coreneuron@develop: add preferred=True | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| diff --git a/bluebrain/repo-bluebrain/packages/coreneuron/package.py b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| index 4ac1697..86ea33d 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/coreneuron/package.py | |
| @@ -20,7 +20,7 @@ class Coreneuron(CMakePackage): | |
| # This simplifies testing the gitlab-pipelines repository: | |
| git = "git@bbpgitlab.epfl.ch:hpc/coreneuron.git" | |
| - version('develop', branch='master') | |
| + version('develop', preferred=True, commit='6f9c31e54f65ead9165e43fe268144873a37c0c1') # old: branch='master' | |
| # 1.0.1 > 1.0.0.20210519 > 1.0 as far as Spack is concerned | |
| version('1.0.0.20220304', commit='2d08705') | |
| version('1.0.0.20220218', commit='102ebde') | |
| diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| index 814c56b..4e699a9 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| @@ -14,7 +14,7 @@ class Nmodl(CMakePackage): | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| # 0.3.1 > 0.3.0.20220110 > 0.3.0 > 0.3b > 0.3 to Spack | |
| - version("develop", branch="master", submodules=True) | |
| + version('develop', preferred=True, commit='426b508730185f8d3475c63b9d5a1aba02be9848', submodules=True) # old: branch="master" | |
| version("llvm", branch="llvm", submodules=True) | |
| # This is the merge commit of #875, which allows catch2 etc. to be dependencies | |
| version("0.3.0.20220531", commit="d63a061ee01b1fd6b14971644bb7fa3efeee20b0") | |
| diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py | |
| index 8a74d23..74e1fc5 100644 | |
| --- a/bluebrain/repo-patches/packages/neuron/package.py | |
| +++ b/bluebrain/repo-patches/packages/neuron/package.py | |
| @@ -30,7 +30,7 @@ class Neuron(CMakePackage): | |
| # Patch for recent CMake versions that don't identify NVHPC as PGI | |
| patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^cmake@3.20:") | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='f242cc8d4ddefb74f71f7f613a4b7b4043c2b641') # old: branch="master" | |
| version("8.0.2", tag="8.0.2") | |
| version("8.0.1", tag="8.0.1") | |
| version("8.0.0", tag="8.0.0") | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=f242cc8d4ddefb74f71f7f613a4b7b4043c2b641 | |
| NMODL_COMMIT=426b508730185f8d3475c63b9d5a1aba02be9848 | |
| CORENEURON_COMMIT=6f9c31e54f65ead9165e43fe268144873a37c0c1 | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack spec -IL ninja[0;m | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| ==> Bootstrapping clingo from pre-built binaries | |
| - utrxbc3aohnru5eynalc3hyv4ca4jqte ninja@1.10.2%gcc@11.2.0 arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| section_end:1655886520:step_script [0Ksection_start:1655886520:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199221 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272556 responseStatus[0;m=201 Created token[0;m=uHoCNEmA | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=199279 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=272556 responseStatus[0;m=201 Created token[0;m=uHoCNEmA | |
| section_end:1655886522:upload_artifacts_on_success [0Ksection_start:1655886522:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886522:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886677:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886677:resolve_secrets [0Ksection_start:1655886677:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor046556631, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272592 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272592_PROD_P112_CP9_C15 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563728 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272592_PROD_P112_CP9_C15 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=8 --jobid=563728 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886679:prepare_executor [0Ksection_start:1655886679:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i5n4 via bbpv1.epfl.ch... | |
| section_end:1655886682:prepare_script [0Ksection_start:1655886682:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886683:get_sources [0Ksection_start:1655886683:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:intel (272569)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=5739 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272569 responseStatus[0;m=200 OK token[0;m=myidMhnG | |
| section_end:1655886684:download_artifacts [0Ksection_start:1655886684:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i5n16 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0831 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272569/spack-build/spack-stage-coreneuron-develop-iw7f7wskesewfnyvmtmk3lfqta3e4jpw/spack-build-iw7f7ws | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #17: reporting_1 ........................ Passed 3.18 sec | |
| 2/17 Test #6: ring_TEST .......................... Passed 3.20 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #1: cmd_interface_test ................. Passed 3.34 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #3: alignment_test ..................... Passed 3.54 sec | |
| 5/17 Test #4: queuing_test ....................... Passed 3.61 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #2: interleave_info_constructor_test ... Passed 3.72 sec | |
| 7/17 Test #5: lfp_test ........................... Passed 3.88 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #8: ring_multisend_TEST ................ Passed 2.85 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #7: ring_binqueue_TEST ................. Passed 3.05 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #9: ring_spike_buffer_TEST ............. Passed 2.66 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #11: ring_permute2_TEST ................. Passed 2.09 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #12: ring_gap_TEST ...................... Passed 2.40 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #13: ring_gap_binqueue_TEST ............. Passed 2.45 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #14: ring_gap_multisend_TEST ............ Passed 0.79 sec | |
| 15/17 Test #15: ring_gap_permute1_TEST ............. Passed 1.52 sec | |
| 16/17 Test #16: ring_gap_permute2_TEST ............. Passed 1.52 sec | |
| 17/17 Test #10: ring_permute1_TEST ................. Passed 6.80 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 10.81 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655886727:step_script [0Ksection_start:1655886727:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8508 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272592 responseStatus[0;m=201 Created token[0;m=yyFEPF_G | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8559 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272592 responseStatus[0;m=201 Created token[0;m=yyFEPF_G | |
| section_end:1655886728:upload_artifacts_on_success [0Ksection_start:1655886728:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886729:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886712:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886712:resolve_secrets [0Ksection_start:1655886712:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor389294522, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272586 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272586_PROD_P112_CP11_C17 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563734 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272586_PROD_P112_CP11_C17 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=8 --jobid=563734 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886715:prepare_executor [0Ksection_start:1655886715:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655886725:prepare_script [0Ksection_start:1655886725:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886726:get_sources [0Ksection_start:1655886726:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc:unified (272563)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=53334 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272563 responseStatus[0;m=200 OK token[0;m=15snGyEb | |
| section_end:1655886727:download_artifacts [0Ksection_start:1655886727:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i5n16 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0832 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272563/spack-build/spack-stage-coreneuron-develop-7xhnxahexeffbne3dpzxwo5qcrumhnar/spack-build-7xhnxah | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 1.38 sec | |
| 2/19 Test #4: queuing_test ........................... Passed 3.05 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #5: lfp_test ............................... Passed 3.25 sec | |
| 4/19 Test #19: reporting_1 ............................ Passed 34.07 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #3: alignment_test ......................... Passed 40.86 sec | |
| 6/19 Test #2: interleave_info_constructor_test ....... Passed 43.31 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 54.85 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 52.13 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 36.77 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 41.62 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 36.60 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 43.31 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 35.73 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 27.28 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 33.72 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 36.69 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 32.56 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 29.87 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 23.38 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 148.59 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655886903:step_script [0Ksection_start:1655886903:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=58793 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272586 responseStatus[0;m=201 Created token[0;m=nxh-MFfk | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=58887 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272586 responseStatus[0;m=201 Created token[0;m=nxh-MFfk | |
| section_end:1655886904:upload_artifacts_on_success [0Ksection_start:1655886904:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886905:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886712:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886712:resolve_secrets [0Ksection_start:1655886712:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor257634120, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272584 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272584_PROD_P112_CP5_C9 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563733 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272584_PROD_P112_CP5_C9 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=8 --jobid=563733 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886714:prepare_executor [0Ksection_start:1655886714:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655886726:prepare_script [0Ksection_start:1655886726:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886727:get_sources [0Ksection_start:1655886727:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:mod2c:nvhpc:acc (272561)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=53411 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272561 responseStatus[0;m=200 OK token[0;m=vewM1syi | |
| section_end:1655886728:download_artifacts [0Ksection_start:1655886728:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r2i5n16 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0832 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272561/spack-build/spack-stage-coreneuron-develop-6qi7xiczl6qfolioernjyooskeukbk4m/spack-build-6qi7xic | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #1: cmd_interface_test ..................... Passed 2.51 sec | |
| 2/19 Test #2: interleave_info_constructor_test ....... Passed 2.66 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #3: alignment_test ......................... Passed 2.79 sec | |
| 4/19 Test #4: queuing_test ........................... Passed 3.05 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 3.26 sec | |
| 6/19 Test #8: ring_multisend_TEST .................... Passed 34.31 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #19: reporting_1 ............................ Passed 42.50 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #6: ring_TEST .............................. Passed 55.10 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #7: ring_binqueue_TEST ..................... Passed 52.56 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 40.01 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 42.62 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 34.32 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 43.34 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 35.87 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 30.96 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 35.95 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 36.87 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 35.17 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 32.65 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 148.77 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655886903:step_script [0Ksection_start:1655886903:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=58855 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272584 responseStatus[0;m=201 Created token[0;m=SFrEsrLR | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=58913 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272584 responseStatus[0;m=201 Created token[0;m=SFrEsrLR | |
| section_end:1655886904:upload_artifacts_on_success [0Ksection_start:1655886904:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655886905:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655886949:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655886949:resolve_secrets [0Ksection_start:1655886949:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor838222641, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272594 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272594_PROD_P112_CP11_C14 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563750 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272594_PROD_P112_CP11_C14 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=8 --jobid=563750 --cpus-per-task=1 --mem=30750M | |
| section_end:1655886956:prepare_executor [0Ksection_start:1655886956:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i6n30 via bbpv1.epfl.ch... | |
| section_end:1655886960:prepare_script [0Ksection_start:1655886960:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655886961:get_sources [0Ksection_start:1655886961:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:intel (272572)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=261736 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272572 responseStatus[0;m=200 OK token[0;m=mjvHJvjk | |
| section_end:1655886962:download_artifacts [0Ksection_start:1655886962:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n30 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0836 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272572/spack-build/spack-stage-coreneuron-develop-rh5oq7ygplbbyryh6avavlwff7ieo23w/spack-build-rh5oq7y | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 17: reporting_1 | |
| 1/17 Test #17: reporting_1 ........................ Passed 3.32 sec | |
| 2/17 Test #6: ring_TEST .......................... Passed 3.33 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/17 Test #4: queuing_test ....................... Passed 3.52 sec | |
| Start 8: ring_multisend_TEST | |
| 4/17 Test #3: alignment_test ..................... Passed 3.83 sec | |
| 5/17 Test #1: cmd_interface_test ................. Passed 4.03 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 6/17 Test #2: interleave_info_constructor_test ... Passed 4.12 sec | |
| 7/17 Test #5: lfp_test ........................... Passed 4.17 sec | |
| Start 10: ring_permute1_TEST | |
| 8/17 Test #7: ring_binqueue_TEST ................. Passed 3.13 sec | |
| Start 11: ring_permute2_TEST | |
| 9/17 Test #8: ring_multisend_TEST ................ Passed 4.02 sec | |
| Start 12: ring_gap_TEST | |
| 10/17 Test #10: ring_permute1_TEST ................. Passed 3.42 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/17 Test #9: ring_spike_buffer_TEST ............. Passed 3.99 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/17 Test #11: ring_permute2_TEST ................. Passed 1.99 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/17 Test #12: ring_gap_TEST ...................... Passed 3.39 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/17 Test #13: ring_gap_binqueue_TEST ............. Passed 3.53 sec | |
| 15/17 Test #14: ring_gap_multisend_TEST ............ Passed 4.47 sec | |
| 16/17 Test #15: ring_gap_permute1_TEST ............. Passed 4.71 sec | |
| 17/17 Test #16: ring_gap_permute2_TEST ............. Passed 2.29 sec | |
| 100% tests passed, 0 tests failed out of 17 | |
| Total Test time (real) = 13.22 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655887002:step_script [0Ksection_start:1655887002:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=263838 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272594 responseStatus[0;m=201 Created token[0;m=UyKayb69 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=263872 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272594 responseStatus[0;m=201 Created token[0;m=UyKayb69 | |
| section_end:1655887003:upload_artifacts_on_success [0Ksection_start:1655887003:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887004:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887120:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887120:resolve_secrets [0Ksection_start:1655887120:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor958115185, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272590 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272590_PROD_P112_CP13_C15 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563758 | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272590_PROD_P112_CP13_C15 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=8 --jobid=563758 --cpus-per-task=1 --mem=30750M | |
| section_end:1655887123:prepare_executor [0Ksection_start:1655887123:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887131:prepare_script [0Ksection_start:1655887131:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887132:get_sources [0Ksection_start:1655887132:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:acc (272567)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=63602 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272567 responseStatus[0;m=200 OK token[0;m=cPTxqcyz | |
| section_end:1655887133:download_artifacts [0Ksection_start:1655887133:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n30 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0839 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272567/spack-build/spack-stage-coreneuron-develop-6q3vzbkyvzxputeeg6himnv7tcfu7ge7/spack-build-6q3vzbk | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #2: interleave_info_constructor_test ....... Passed 1.75 sec | |
| 2/19 Test #1: cmd_interface_test ..................... Passed 1.90 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #3: alignment_test ......................... Passed 2.01 sec | |
| 4/19 Test #4: queuing_test ........................... Passed 2.12 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 2.26 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 24.48 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #7: ring_binqueue_TEST ..................... Passed 41.74 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #6: ring_TEST .............................. Passed 44.96 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 48.64 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 27.99 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 26.48 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 31.26 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 39.41 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 37.79 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 47.14 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 51.95 sec | |
| 17/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 45.43 sec | |
| 18/19 Test #16: ring_gap_permute2_TEST ................. Passed 54.97 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 28.15 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 145.44 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655887303:step_script [0Ksection_start:1655887303:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=67550 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272590 responseStatus[0;m=201 Created token[0;m=2ihdmEon | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=67581 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272590 responseStatus[0;m=201 Created token[0;m=2ihdmEon | |
| section_end:1655887305:upload_artifacts_on_success [0Ksection_start:1655887305:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887305:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887117:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887117:resolve_secrets [0Ksection_start:1655887117:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor154594499, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272588 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272588_PROD_P112_CP10_C14 | |
| Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=8 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563756 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=8 --cpus-per-task=1 --mem=30750M --job-name=GL_J272588_PROD_P112_CP10_C14 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=8 --jobid=563756 --cpus-per-task=1 --mem=30750M | |
| section_end:1655887118:prepare_executor [0Ksection_start:1655887118:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887125:prepare_script [0Ksection_start:1655887125:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887126:get_sources [0Ksection_start:1655887126:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:coreneuron:nmodl:nvhpc:omp (272565)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=62956 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272565 responseStatus[0;m=200 OK token[0;m=W7PLLsmx | |
| section_end:1655887127:download_artifacts [0Ksection_start:1655887127:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n30 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0839 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272565/spack-build/spack-stage-coreneuron-develop-rjmenmrpgml6pswauzum5llfbry6ngnh/spack-build-rjmenmr | |
| Start 1: cmd_interface_test | |
| Start 2: interleave_info_constructor_test | |
| Start 3: alignment_test | |
| Start 4: queuing_test | |
| Start 5: lfp_test | |
| Start 6: ring_TEST | |
| Start 19: reporting_1 | |
| 1/19 Test #2: interleave_info_constructor_test ....... Passed 1.69 sec | |
| 2/19 Test #3: alignment_test ......................... Passed 1.80 sec | |
| Start 7: ring_binqueue_TEST | |
| 3/19 Test #1: cmd_interface_test ..................... Passed 1.92 sec | |
| 4/19 Test #4: queuing_test ........................... Passed 2.05 sec | |
| Start 8: ring_multisend_TEST | |
| 5/19 Test #5: lfp_test ............................... Passed 2.19 sec | |
| 6/19 Test #19: reporting_1 ............................ Passed 26.84 sec | |
| Start 9: ring_spike_buffer_TEST | |
| 7/19 Test #6: ring_TEST .............................. Passed 73.28 sec | |
| Start 10: ring_permute1_TEST | |
| 8/19 Test #7: ring_binqueue_TEST ..................... Passed 83.59 sec | |
| Start 11: ring_permute2_TEST | |
| 9/19 Test #8: ring_multisend_TEST .................... Passed 85.41 sec | |
| Start 12: ring_gap_TEST | |
| 10/19 Test #9: ring_spike_buffer_TEST ................. Passed 64.60 sec | |
| Start 13: ring_gap_binqueue_TEST | |
| 11/19 Test #10: ring_permute1_TEST ..................... Passed 45.94 sec | |
| Start 14: ring_gap_multisend_TEST | |
| 12/19 Test #11: ring_permute2_TEST ..................... Passed 54.12 sec | |
| Start 15: ring_gap_permute1_TEST | |
| 13/19 Test #12: ring_gap_TEST .......................... Passed 195.79 sec | |
| Start 16: ring_gap_permute2_TEST | |
| 14/19 Test #13: ring_gap_binqueue_TEST ................. Passed 200.38 sec | |
| Start 17: ring_permute2_cudaInterface_TEST | |
| 15/19 Test #14: ring_gap_multisend_TEST ................ Passed 176.63 sec | |
| Start 18: ring_gap_permute2_cudaInterface_TEST | |
| 16/19 Test #15: ring_gap_permute1_TEST ................. Passed 157.83 sec | |
| 17/19 Test #16: ring_gap_permute2_TEST ................. Passed 14.90 sec | |
| 18/19 Test #17: ring_permute2_cudaInterface_TEST ....... Passed 7.75 sec | |
| 19/19 Test #18: ring_gap_permute2_cudaInterface_TEST ... Passed 6.87 sec | |
| 100% tests passed, 0 tests failed out of 19 | |
| Total Test time (real) = 302.75 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655887456:step_script [0Ksection_start:1655887456:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=68445 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272588 responseStatus[0;m=201 Created token[0;m=xx81umMX | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=68477 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272588 responseStatus[0;m=201 Created token[0;m=xx81umMX | |
| section_end:1655887457:upload_artifacts_on_success [0Ksection_start:1655887457:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655887458:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887531:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887531:resolve_secrets [0Ksection_start:1655887531:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor800498274, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272602 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272602_PROD_P112_CP6_C9 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563808 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272602_PROD_P112_CP6_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=16 --jobid=563808 --cpus-per-task=1 --mem=76G | |
| section_end:1655887532:prepare_executor [0Ksection_start:1655887532:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r1i7n22 via bbpv1.epfl.ch... | |
| section_end:1655887536:prepare_script [0Ksection_start:1655887536:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887538:get_sources [0Ksection_start:1655887538:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:intel (272579)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=227134 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272579 responseStatus[0;m=200 OK token[0;m=nyWmD2tP | |
| section_end:1655887542:download_artifacts [0Ksection_start:1655887542:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n22 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0846 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272579/spack-build/spack-stage-neuron-develop-5rhr7pzdmuyym5ch4jvmvyd7544mkxl4/spack-build-5rhr7pz | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 62: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 68: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 74: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 80: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 85: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/121 Test #62: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.69 sec | |
| Start 44: external_ringtest::neuron | |
| 2/121 Test #68: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.88 sec | |
| Start 52: testcorenrn_bbcore::neuron | |
| 3/121 Test #85: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 7.36 sec | |
| Start 103: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 4/121 Test #56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 7.72 sec | |
| Start 53: testcorenrn_bbcore::coreneuron_cpu_online | |
| 5/121 Test #80: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 7.75 sec | |
| Start 54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 6/121 Test #74: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 8.03 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 7/121 Test #91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 8.19 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 8/121 Test #49: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 11.52 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi | |
| 9/121 Test #97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 12.23 sec | |
| Start 118: olfactory-bulb-3d::neuron::preparation | |
| 10/121 Test #44: external_ringtest::neuron .......................................... Passed 10.48 sec | |
| Start 55: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/121 Test #118: olfactory-bulb-3d::neuron::preparation ............................. Passed 1.49 sec | |
| Start 120: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 12/121 Test #120: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.53 sec | |
| Start 41: reduced_dentate::neuron | |
| 13/121 Test #52: testcorenrn_bbcore::neuron ......................................... Passed 11.94 sec | |
| Start 58: testcorenrn_conc::neuron | |
| 14/121 Test #55: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 7.15 sec | |
| Start 59: testcorenrn_conc::coreneuron_cpu_online | |
| 15/121 Test #103: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 15.43 sec | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline | |
| 16/121 Test #53: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 16.82 sec | |
| Start 60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 17/121 Test #58: testcorenrn_conc::neuron ........................................... Passed 12.88 sec | |
| Start 61: testcorenrn_conc::coreneuron_cpu_offline | |
| 18/121 Test #45: external_ringtest::neuron_mpi ...................................... Passed 20.66 sec | |
| Start 64: testcorenrn_deriv::neuron | |
| Start 65: testcorenrn_deriv::coreneuron_cpu_online | |
| 19/121 Test #54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 21.14 sec | |
| Start 66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 20/121 Test #48: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 6.54 sec | |
| Start 67: testcorenrn_deriv::coreneuron_cpu_offline | |
| Start 76: testcorenrn_kin::neuron | |
| 21/121 Test #61: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 3.21 sec | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online | |
| 22/121 Test #67: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 2.96 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 23/121 Test #64: testcorenrn_deriv::neuron .......................................... Passed 6.22 sec | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline | |
| 24/121 Test #76: testcorenrn_kin::neuron ............................................ Passed 6.07 sec | |
| Start 109: channel_benchmark_hippo::neuron | |
| 25/121 Test #59: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 15.51 sec | |
| Start 110: channel_benchmark_hippo::coreneuron_cpu_online | |
| 26/121 Test #60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 12.67 sec | |
| Start 111: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 27/121 Test #79: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 3.85 sec | |
| Start 113: channel_benchmark_sscx::neuron | |
| 28/121 Test #65: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 10.94 sec | |
| Start 114: channel_benchmark_sscx::coreneuron_cpu_online | |
| 29/121 Test #66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 12.29 sec | |
| Start 115: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 30/121 Test #77: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 9.98 sec | |
| Start 1: testneuron | |
| 31/121 Test #1: testneuron ......................................................... Passed 0.09 sec | |
| Start 2: ringtest | |
| 32/121 Test #78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 9.04 sec | |
| Start 3: connect_dend | |
| 33/121 Test #2: ringtest ........................................................... Passed 0.62 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 34/121 Test #3: connect_dend ....................................................... Passed 0.70 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 35/121 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 1.06 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 36/121 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 1.10 sec | |
| Start 7: mpi_init::python_mpienv | |
| 37/121 Test #7: mpi_init::python_mpienv ............................................ Passed 2.81 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 38/121 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 2.27 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 39/121 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.88 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 40/121 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.49 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 41/121 Test #46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 48.26 sec | |
| Start 70: testcorenrn_gf::neuron | |
| 42/121 Test #47: external_ringtest::coreneuron_cpu_mpi .............................. Passed 47.68 sec | |
| Start 71: testcorenrn_gf::coreneuron_cpu_online | |
| 43/121 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 21.73 sec | |
| Start 12: pynrn::basic_tests | |
| 44/121 Test #70: testcorenrn_gf::neuron ............................................. Passed 8.07 sec | |
| Start 72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 45/121 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 16.15 sec | |
| Start 13: coverage_tests::cover_tests | |
| 46/121 Test #71: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 15.01 sec | |
| Start 73: testcorenrn_gf::coreneuron_cpu_offline | |
| 47/121 Test #73: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 17.64 sec | |
| Start 82: testcorenrn_patstim::neuron | |
| 48/121 Test #72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 42.12 sec | |
| Start 83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 49/121 Test #13: coverage_tests::cover_tests ........................................ Passed 42.19 sec | |
| Start 14: parallel_tests | |
| 50/121 Test #82: testcorenrn_patstim::neuron ........................................ Passed 30.80 sec | |
| Start 84: testcorenrn_patstim::coreneuron_cpu_offline | |
| 51/121 Test #41: reduced_dentate::neuron ............................................ Passed 125.51 sec | |
| Start 42: reduced_dentate::coreneuron_cpu | |
| 52/121 Test #84: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 17.44 sec | |
| Start 87: testcorenrn_vecplay::neuron | |
| 53/121 Test #83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 56.10 sec | |
| Start 88: testcorenrn_vecplay::coreneuron_cpu_online | |
| 54/121 Test #12: pynrn::basic_tests ................................................. Passed 99.46 sec | |
| Start 15: parallel_partrans | |
| 55/121 Test #87: testcorenrn_vecplay::neuron ........................................ Passed 31.51 sec | |
| Start 89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 56/121 Test #14: parallel_tests ..................................................... Passed 67.99 sec | |
| Start 16: parallel_netpar | |
| 57/121 Test #114: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 145.31 sec | |
| Start 17: parallel_bas | |
| 58/121 Test #113: channel_benchmark_sscx::neuron ..................................... Passed 149.14 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 59/121 Test #110: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 154.55 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 60/121 Test #111: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 157.71 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 61/121 Test #15: parallel_partrans .................................................. Passed 32.33 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 62/121 Test #109: channel_benchmark_hippo::neuron .................................... Passed 166.15 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 63/121 Test #115: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 166.52 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 64/121 Test #88: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 45.12 sec | |
| Start 90: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 65/121 Test #89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 40.36 sec | |
| Start 99: testcorenrn_watch::neuron | |
| 66/121 Test #16: parallel_netpar .................................................... Passed 38.43 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 67/121 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 24.65 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 68/121 Test #90: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 17.00 sec | |
| Start 100: testcorenrn_watch::coreneuron_cpu_online | |
| 69/121 Test #42: reduced_dentate::coreneuron_cpu .................................... Passed 99.48 sec | |
| Start 93: testcorenrn_vecevent::neuron | |
| 70/121 Test #99: testcorenrn_watch::neuron .......................................... Passed 29.17 sec | |
| Start 101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 71/121 Test #18: coreneuron_modtests::version_macros ................................ Passed 61.59 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 72/121 Test #93: testcorenrn_vecevent::neuron ....................................... Passed 26.30 sec | |
| Start 94: testcorenrn_vecevent::coreneuron_cpu_online | |
| 73/121 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 76.59 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 74/121 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 69.01 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 75/121 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 76.36 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 76/121 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 66.80 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 77/121 Test #100: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 49.64 sec | |
| Start 102: testcorenrn_watch::coreneuron_cpu_offline | |
| 78/121 Test #102: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 15.44 sec | |
| Start 105: testcorenrn_netstimdirect::direct_netstimdirect | |
| 79/121 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 74.09 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 80/121 Test #101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 55.19 sec | |
| Start 106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 81/121 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 78.81 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 82/121 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 57.63 sec | |
| Start 36: modlunit_unitstest | |
| 83/121 Test #36: modlunit_unitstest ................................................. Passed 0.48 sec | |
| Start 37: modlunit_hh | |
| 84/121 Test #37: modlunit_hh ........................................................ Passed 0.07 sec | |
| Start 38: modlunit_stim | |
| 85/121 Test #38: modlunit_stim ...................................................... Passed 0.06 sec | |
| Start 39: modlunit_pattern | |
| 86/121 Test #39: modlunit_pattern ................................................... Passed 0.28 sec | |
| Start 40: external_nrntest | |
| 87/121 Test #94: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 53.22 sec | |
| Start 95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 88/121 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 58.97 sec | |
| Start 43: reduced_dentate::compare_results | |
| 89/121 Test #105: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 38.29 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 90/121 Test #43: reduced_dentate::compare_results ................................... Passed 2.44 sec | |
| Start 57: testcorenrn_bbcore::compare_results | |
| 91/121 Test #57: testcorenrn_bbcore::compare_results ................................ Passed 2.25 sec | |
| Start 63: testcorenrn_conc::compare_results | |
| 92/121 Test #17: parallel_bas ....................................................... Passed 148.01 sec | |
| Start 69: testcorenrn_deriv::compare_results | |
| 93/121 Test #106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 36.26 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 94/121 Test #63: testcorenrn_conc::compare_results .................................. Passed 3.14 sec | |
| Start 75: testcorenrn_gf::compare_results | |
| 95/121 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 63.54 sec | |
| Start 81: testcorenrn_kin::compare_results | |
| 96/121 Test #69: testcorenrn_deriv::compare_results ................................. Passed 3.26 sec | |
| Start 86: testcorenrn_patstim::compare_results | |
| 97/121 Test #75: testcorenrn_gf::compare_results .................................... Passed 3.46 sec | |
| Start 92: testcorenrn_vecplay::compare_results | |
| 98/121 Test #81: testcorenrn_kin::compare_results ................................... Passed 2.93 sec | |
| Start 104: testcorenrn_watch::compare_results | |
| 99/121 Test #104: testcorenrn_watch::compare_results ................................. Passed 0.77 sec | |
| Start 107: testcorenrn_netstimdirect::compare_results | |
| 100/121 Test #92: testcorenrn_vecplay::compare_results ............................... Passed 1.80 sec | |
| Start 112: channel_benchmark_hippo::compare_results | |
| 101/121 Test #86: testcorenrn_patstim::compare_results ............................... Passed 3.75 sec | |
| Start 116: channel_benchmark_sscx::compare_results | |
| 102/121 Test #107: testcorenrn_netstimdirect::compare_results ......................... Passed 2.81 sec | |
| 103/121 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 67.74 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 104/121 Test #116: channel_benchmark_sscx::compare_results ............................ Passed 2.22 sec | |
| 105/121 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 47.72 sec | |
| 106/121 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 45.29 sec | |
| 107/121 Test #112: channel_benchmark_hippo::compare_results ........................... Passed 3.79 sec | |
| Start 96: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 108/121 Test #95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 27.12 sec | |
| Start 117: olfactory-bulb-3d::neuron | |
| 109/121 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 77.40 sec | |
| 110/121 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 20.22 sec | |
| 111/121 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 15.32 sec | |
| Start 119: olfactory-bulb-3d::coreneuron_cpu_online | |
| 112/121 Test #96: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 5.70 sec | |
| Start 98: testcorenrn_vecevent::compare_results | |
| 113/121 Test #98: testcorenrn_vecevent::compare_results .............................. Passed 0.70 sec | |
| 114/121 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 8.04 sec | |
| Start 50: external_ringtest::coreneuron_cpu_mpi_threads | |
| 115/121 Test #50: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 15.70 sec | |
| Start 51: external_ringtest::compare_results | |
| 116/121 Test #51: external_ringtest::compare_results ................................. Passed 0.46 sec | |
| 117/121 Test #117: olfactory-bulb-3d::neuron .......................................... Passed 157.38 sec | |
| 118/121 Test #119: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 187.13 sec | |
| Start 121: olfactory-bulb-3d::compare_results | |
| 119/121 Test #121: olfactory-bulb-3d::compare_results ................................. Passed 0.22 sec | |
| 120/121 Test #40: external_nrntest ................................................... Passed 265.54 sec | |
| Start 108: tqperf::coreneuron | |
| 121/121 Test #108: tqperf::coreneuron ................................................. Passed 7.66 sec | |
| 100% tests passed, 0 tests failed out of 121 | |
| Total Test time (real) = 581.49 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655888197:step_script [0Ksection_start:1655888197:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249848 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272602 responseStatus[0;m=201 Created token[0;m=ZVkACDK1 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249902 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272602 responseStatus[0;m=201 Created token[0;m=ZVkACDK1 | |
| section_end:1655888199:upload_artifacts_on_success [0Ksection_start:1655888199:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888201:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655887687:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655887687:resolve_secrets [0Ksection_start:1655887687:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor487004905, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272596 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272596_PROD_P112_CP4_C8 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 563812 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272596_PROD_P112_CP4_C8 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=16 --jobid=563812 --cpus-per-task=1 --mem=76G | |
| section_end:1655887688:prepare_executor [0Ksection_start:1655887688:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655887695:prepare_script [0Ksection_start:1655887695:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655887697:get_sources [0Ksection_start:1655887697:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:mod2c:nvhpc:acc (272574)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=73489 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272574 responseStatus[0;m=200 OK token[0;m=SFnJvts6 | |
| section_end:1655887698:download_artifacts [0Ksection_start:1655887698:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i7n28 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0848 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272574/spack-build/spack-stage-neuron-develop-mqy2bmic4al44uogrem4llrvfdch65dy/spack-build-mqy2bmi | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 89: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 93: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 99: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 103: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 109: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 113: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 119: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 123: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/185 Test #79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.20 sec | |
| Start 128: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/185 Test #83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.25 sec | |
| Start 62: external_ringtest::neuron | |
| 3/185 Test #93: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.68 sec | |
| Start 75: testcorenrn_bbcore::neuron | |
| 4/185 Test #103: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 3.30 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/185 Test #123: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 3.49 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/185 Test #89: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 3.56 sec | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/185 Test #119: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 3.67 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/185 Test #99: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 3.80 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 9/185 Test #109: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 4.05 sec | |
| Start 131: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 10/185 Test #62: external_ringtest::neuron .......................................... Passed 1.90 sec | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 11/185 Test #113: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.19 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 12/185 Test #128: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 2.04 sec | |
| Start 85: testcorenrn_conc::neuron | |
| 13/185 Test #75: testcorenrn_bbcore::neuron ......................................... Passed 1.68 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online | |
| 14/185 Test #85: testcorenrn_conc::neuron ........................................... Passed 2.12 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 15/185 Test #131: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 2.37 sec | |
| Start 141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 16/185 Test #137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 2.28 sec | |
| Start 157: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 17/185 Test #141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 1.75 sec | |
| Start 161: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 18/185 Test #157: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 1.72 sec | |
| Start 63: external_ringtest::neuron_mpi | |
| 19/185 Test #63: external_ringtest::neuron_mpi ...................................... Passed 2.35 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 20/185 Test #161: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 2.41 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi | |
| 21/185 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 21.57 sec | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline | |
| 22/185 Test #80: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 22.50 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online | |
| 23/185 Test #81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 22.64 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 24/185 Test #72: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 27.80 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 25/185 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 24.30 sec | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline | |
| 26/185 Test #76: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 24.92 sec | |
| Start 95: testcorenrn_deriv::neuron | |
| 27/185 Test #67: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 28.30 sec | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline | |
| 28/185 Test #86: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 24.76 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online | |
| 29/185 Test #95: testcorenrn_deriv::neuron .......................................... Passed 1.41 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 30/185 Test #65: external_ringtest::coreneuron_cpu_mpi .............................. Passed 19.58 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi | |
| 31/185 Test #87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 24.72 sec | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline | |
| 32/185 Test #88: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 17.06 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online | |
| 33/185 Test #66: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 16.78 sec | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline | |
| 34/185 Test #90: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 18.96 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 35/185 Test #91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 18.72 sec | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline | |
| 36/185 Test #77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 59.40 sec | |
| Start 115: testcorenrn_kin::neuron | |
| 37/185 Test #115: testcorenrn_kin::neuron ............................................ Passed 1.46 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online | |
| 38/185 Test #96: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 43.39 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 39/185 Test #70: external_ringtest::coreneuron_gpu_mpi .............................. Passed 55.95 sec | |
| Start 105: testcorenrn_gf::neuron | |
| 40/185 Test #105: testcorenrn_gf::neuron ............................................. Passed 4.11 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online | |
| 41/185 Test #98: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 66.56 sec | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline | |
| 42/185 Test #92: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 70.36 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online | |
| 43/185 Test #97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 68.76 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 44/185 Test #71: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 53.37 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 45/185 Test #102: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 53.62 sec | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline | |
| 46/185 Test #101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 53.68 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 47/185 Test #100: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 59.30 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline | |
| 48/185 Test #116: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 55.08 sec | |
| Start 167: channel_benchmark_hippo::neuron | |
| 49/185 Test #167: channel_benchmark_hippo::neuron .................................... Passed 28.69 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_online | |
| 50/185 Test #106: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 65.51 sec | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline | |
| 51/185 Test #118: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 81.16 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 52/185 Test #122: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 80.05 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_online | |
| 53/185 Test #121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 80.48 sec | |
| Start 171: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 54/185 Test #127: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 76.94 sec | |
| Start 173: channel_benchmark_sscx::neuron | |
| 55/185 Test #117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 109.64 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_online | |
| 56/185 Test #120: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 84.88 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 57/185 Test #107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 108.44 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online | |
| 58/185 Test #64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 223.55 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 59/185 Test #108: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 104.29 sec | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline | |
| 60/185 Test #168: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 114.48 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_online | |
| 61/185 Test #69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 248.14 sec | |
| Start 125: testcorenrn_patstim::neuron | |
| 62/185 Test #126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 177.30 sec | |
| Start 177: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 63/185 Test #125: testcorenrn_patstim::neuron ........................................ Passed 3.89 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 64/185 Test #110: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 101.25 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline | |
| 65/185 Test #173: channel_benchmark_sscx::neuron ..................................... Passed 131.90 sec | |
| Start 1: testneuron | |
| 66/185 Test #1: testneuron ......................................................... Passed 0.05 sec | |
| Start 2: ringtest | |
| 67/185 Test #2: ringtest ........................................................... Passed 0.23 sec | |
| Start 3: connect_dend | |
| 68/185 Test #3: connect_dend ....................................................... Passed 0.13 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 69/185 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.39 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 70/185 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.15 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 71/185 Test #111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 77.95 sec | |
| Start 133: testcorenrn_vecplay::neuron | |
| 72/185 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.49 sec | |
| Start 7: mpi_init::python_mpienv | |
| 73/185 Test #7: mpi_init::python_mpienv ............................................ Passed 12.85 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 74/185 Test #133: testcorenrn_vecplay::neuron ........................................ Passed 13.29 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online | |
| 75/185 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.50 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 76/185 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.37 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 77/185 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.02 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 78/185 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 2.17 sec | |
| Start 12: pynrn::basic_tests | |
| 79/185 Test #12: pynrn::basic_tests ................................................. Passed 8.62 sec | |
| Start 13: coverage_tests::cover_tests | |
| 80/185 Test #13: coverage_tests::cover_tests ........................................ Passed 3.14 sec | |
| Start 14: parallel_tests | |
| 81/185 Test #14: parallel_tests ..................................................... Passed 4.97 sec | |
| Start 15: parallel_partrans | |
| 82/185 Test #15: parallel_partrans .................................................. Passed 1.75 sec | |
| Start 16: parallel_netpar | |
| 83/185 Test #112: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 92.47 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 84/185 Test #16: parallel_netpar .................................................... Passed 2.07 sec | |
| Start 17: parallel_bas | |
| 85/185 Test #17: parallel_bas ....................................................... Passed 3.23 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 86/185 Test #174: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 208.06 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 87/185 Test #170: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 219.44 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 88/185 Test #171: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 221.37 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 89/185 Test #176: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 137.67 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 90/185 Test #169: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 221.99 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 91/185 Test #175: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 218.00 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 92/185 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 1.51 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 93/185 Test #177: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 127.89 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 94/185 Test #130: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 96.40 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 95/185 Test #134: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 84.14 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online | |
| 96/185 Test #135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 91.06 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 97/185 Test #18: coreneuron_modtests::version_macros ................................ Passed 104.27 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 98/185 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 82.28 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 99/185 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 92.33 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 100/185 Test #129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 203.76 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 101/185 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 80.98 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 102/185 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 85.30 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 103/185 Test #138: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 77.20 sec | |
| Start 153: testcorenrn_watch::neuron | |
| 104/185 Test #153: testcorenrn_watch::neuron .......................................... Passed 1.58 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online | |
| 105/185 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 99.27 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 106/185 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 94.97 sec | |
| Start 36: coreneuron_modtests::fornetcon_py_gpu | |
| 107/185 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 96.94 sec | |
| Start 37: coreneuron_modtests::direct_py_gpu | |
| 108/185 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 94.34 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 109/185 Test #139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 158.47 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline | |
| 110/185 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 160.59 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online | |
| 111/185 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 158.85 sec | |
| Start 38: coreneuron_modtests::direct_hoc_gpu | |
| 112/185 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 184.15 sec | |
| Start 39: coreneuron_modtests::spikes_py_gpu | |
| 113/185 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 159.54 sec | |
| Start 40: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 114/185 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 162.61 sec | |
| Start 41: coreneuron_modtests::fast_imem_py_gpu | |
| 115/185 Test #41: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 1.71 sec | |
| Start 42: coreneuron_modtests::datareturn_py_gpu | |
| 116/185 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 150.04 sec | |
| Start 43: coreneuron_modtests::test_units_py_gpu | |
| 117/185 Test #37: coreneuron_modtests::direct_py_gpu ................................. Passed 152.41 sec | |
| Start 44: coreneuron_modtests::test_netmove_py_gpu | |
| 118/185 Test #154: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 166.12 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 119/185 Test #36: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 199.86 sec | |
| Start 45: coreneuron_modtests::test_pointer_py_gpu | |
| 120/185 Test #155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 199.60 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline | |
| 121/185 Test #156: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 96.99 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect | |
| 122/185 Test #39: coreneuron_modtests::spikes_py_gpu ................................. Passed 88.86 sec | |
| Start 46: coreneuron_modtests::test_watchrange_py_gpu | |
| 123/185 Test #43: coreneuron_modtests::test_units_py_gpu ............................. Passed 85.89 sec | |
| Start 47: coreneuron_modtests::test_psolve_py_gpu | |
| 124/185 Test #40: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 90.03 sec | |
| Start 48: coreneuron_modtests::test_ba_py_gpu | |
| 125/185 Test #38: coreneuron_modtests::direct_hoc_gpu ................................ Passed 90.85 sec | |
| Start 49: coreneuron_modtests::test_natrans_py_gpu | |
| 126/185 Test #158: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 91.33 sec | |
| Start 164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 127/185 Test #42: coreneuron_modtests::datareturn_py_gpu ............................. Passed 88.91 sec | |
| Start 53: modlunit_unitstest | |
| 128/185 Test #53: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 54: modlunit_hh | |
| 129/185 Test #54: modlunit_hh ........................................................ Passed 0.01 sec | |
| Start 55: modlunit_stim | |
| 130/185 Test #55: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 56: modlunit_pattern | |
| 131/185 Test #56: modlunit_pattern ................................................... Passed 0.02 sec | |
| Start 57: external_nrntest | |
| 132/185 Test #159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 85.85 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 133/185 Test #44: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 96.65 sec | |
| Start 84: testcorenrn_bbcore::compare_results | |
| 134/185 Test #84: testcorenrn_bbcore::compare_results ................................ Passed 0.06 sec | |
| Start 94: testcorenrn_conc::compare_results | |
| 135/185 Test #94: testcorenrn_conc::compare_results .................................. Passed 0.20 sec | |
| Start 104: testcorenrn_deriv::compare_results | |
| 136/185 Test #104: testcorenrn_deriv::compare_results ................................. Passed 0.05 sec | |
| Start 114: testcorenrn_gf::compare_results | |
| 137/185 Test #114: testcorenrn_gf::compare_results .................................... Passed 0.06 sec | |
| Start 124: testcorenrn_kin::compare_results | |
| 138/185 Test #124: testcorenrn_kin::compare_results ................................... Passed 0.17 sec | |
| Start 132: testcorenrn_patstim::compare_results | |
| 139/185 Test #132: testcorenrn_patstim::compare_results ............................... Passed 0.07 sec | |
| Start 142: testcorenrn_vecplay::compare_results | |
| 140/185 Test #142: testcorenrn_vecplay::compare_results ............................... Passed 0.05 sec | |
| Start 172: channel_benchmark_hippo::compare_results | |
| 141/185 Test #172: channel_benchmark_hippo::compare_results ........................... Passed 0.05 sec | |
| Start 178: channel_benchmark_sscx::compare_results | |
| 142/185 Test #178: channel_benchmark_sscx::compare_results ............................ Passed 0.05 sec | |
| 143/185 Test #160: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 59.87 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| Start 162: testcorenrn_watch::compare_results | |
| 144/185 Test #162: testcorenrn_watch::compare_results ................................. Passed 0.13 sec | |
| 145/185 Test #163: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 68.69 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 146/185 Test #49: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 51.61 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_py_gpu | |
| 147/185 Test #164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 53.37 sec | |
| Start 51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 148/185 Test #46: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 66.77 sec | |
| Start 165: testcorenrn_netstimdirect::compare_results | |
| 149/185 Test #165: testcorenrn_netstimdirect::compare_results ......................... Passed 0.07 sec | |
| 150/185 Test #48: coreneuron_modtests::test_ba_py_gpu ................................ Passed 65.71 sec | |
| Start 52: coreneuron_modtests::inputpresyn_py_gpu | |
| 151/185 Test #47: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 66.88 sec | |
| 152/185 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 61.77 sec | |
| 153/185 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 55.30 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 154/185 Test #147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 2.76 sec | |
| Start 151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 155/185 Test #151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 2.74 sec | |
| Start 180: olfactory-bulb-3d::neuron::preparation | |
| 156/185 Test #180: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.05 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 157/185 Test #182: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.05 sec | |
| Start 184: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 158/185 Test #184: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.03 sec | |
| Start 58: reduced_dentate::neuron | |
| 159/185 Test #57: external_nrntest ................................................... Passed 88.89 sec | |
| 160/185 Test #58: reduced_dentate::neuron ............................................ Passed 12.36 sec | |
| Start 59: reduced_dentate::coreneuron_cpu | |
| 161/185 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 65.72 sec | |
| Start 60: reduced_dentate::coreneuron_gpu | |
| 162/185 Test #51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 44.96 sec | |
| 163/185 Test #50: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 47.07 sec | |
| Start 143: testcorenrn_vecevent::neuron | |
| 164/185 Test #143: testcorenrn_vecevent::neuron ....................................... Passed 5.73 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online | |
| 165/185 Test #52: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 47.41 sec | |
| 166/185 Test #144: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 73.73 sec | |
| Start 68: external_ringtest::coreneuron_cpu_mpi_threads | |
| 167/185 Test #59: reduced_dentate::coreneuron_cpu .................................... Passed 82.46 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 168/185 Test #60: reduced_dentate::coreneuron_gpu .................................... Passed 80.98 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 169/185 Test #68: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 59.61 sec | |
| Start 73: external_ringtest::coreneuron_gpu_mpi_threads | |
| 170/185 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 58.76 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online | |
| 171/185 Test #145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 70.05 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 172/185 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 507.67 sec | |
| Start 61: reduced_dentate::compare_results | |
| 173/185 Test #61: reduced_dentate::compare_results ................................... Passed 0.21 sec | |
| 174/185 Test #45: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 333.59 sec | |
| 175/185 Test #148: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 58.55 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 176/185 Test #149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 48.08 sec | |
| Start 179: olfactory-bulb-3d::neuron | |
| 177/185 Test #73: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 59.52 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online | |
| 178/185 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 35.35 sec | |
| Start 74: external_ringtest::compare_results | |
| Start 152: testcorenrn_vecevent::compare_results | |
| 179/185 Test #152: testcorenrn_vecevent::compare_results .............................. Passed 0.06 sec | |
| 180/185 Test #74: external_ringtest::compare_results ................................. Passed 0.07 sec | |
| 181/185 Test #179: olfactory-bulb-3d::neuron .......................................... Passed 112.11 sec | |
| 182/185 Test #181: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 141.13 sec | |
| 183/185 Test #183: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 141.56 sec | |
| Start 166: tqperf::coreneuron | |
| 184/185 Test #166: tqperf::coreneuron ................................................. Passed 30.18 sec | |
| Start 185: olfactory-bulb-3d::compare_results | |
| 185/185 Test #185: olfactory-bulb-3d::compare_results ................................. Passed 0.23 sec | |
| 100% tests passed, 0 tests failed out of 185 | |
| Total Test time (real) = 1204.74 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655888928:step_script [0Ksection_start:1655888928:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30730 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272596 responseStatus[0;m=201 Created token[0;m=zSpZEv_B | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=30783 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272596 responseStatus[0;m=201 Created token[0;m=zSpZEv_B | |
| section_end:1655888930:upload_artifacts_on_success [0Ksection_start:1655888930:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888931:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655888437:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655888437:resolve_secrets [0Ksection_start:1655888437:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor176755817, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272603 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272603_PROD_P112_CP5_C3 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 563992 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272603_PROD_P112_CP5_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=16 --jobid=563992 --cpus-per-task=1 --mem=76G | |
| section_end:1655888438:prepare_executor [0Ksection_start:1655888438:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on r4i6n4 via bbpv1.epfl.ch... | |
| section_end:1655888441:prepare_script [0Ksection_start:1655888441:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655888442:get_sources [0Ksection_start:1655888442:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:intel (272581)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=8432 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272581 responseStatus[0;m=200 OK token[0;m=ZLXYD-d_ | |
| section_end:1655888443:download_artifacts [0Ksection_start:1655888443:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n30 | |
| Build name: Linux-icpc | |
| Create new tag: 20220622-0901 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272581/spack-build/spack-stage-neuron-develop-jhl3fvxgrrds5w2v5yyiqgn3n4pxwftn/spack-build-jhl3fvx | |
| Start 49: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 62: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 68: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 74: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 80: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| Start 85: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| Start 91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| Start 97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 1/120 Test #62: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.14 sec | |
| Start 44: external_ringtest::neuron | |
| 2/120 Test #56: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.19 sec | |
| Start 52: testcorenrn_bbcore::neuron | |
| 3/120 Test #68: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 2.73 sec | |
| Start 53: testcorenrn_bbcore::coreneuron_cpu_online | |
| 4/120 Test #80: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 2.89 sec | |
| Start 54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 5/120 Test #91: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 3.85 sec | |
| Start 103: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 6/120 Test #74: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 3.96 sec | |
| Start 45: external_ringtest::neuron_mpi | |
| 7/120 Test #85: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 4.21 sec | |
| Start 46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 8/120 Test #97: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 4.44 sec | |
| Start 117: olfactory-bulb-3d::neuron::preparation | |
| 9/120 Test #117: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.03 sec | |
| Start 119: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 10/120 Test #49: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 4.50 sec | |
| Start 47: external_ringtest::coreneuron_cpu_mpi | |
| 11/120 Test #119: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.06 sec | |
| Start 41: reduced_dentate::neuron | |
| 12/120 Test #52: testcorenrn_bbcore::neuron ......................................... Passed 2.51 sec | |
| Start 55: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 13/120 Test #44: external_ringtest::neuron .......................................... Passed 2.68 sec | |
| Start 58: testcorenrn_conc::neuron | |
| 14/120 Test #53: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 2.49 sec | |
| Start 59: testcorenrn_conc::coreneuron_cpu_online | |
| 15/120 Test #54: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 2.45 sec | |
| Start 60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 16/120 Test #103: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 1.79 sec | |
| Start 48: external_ringtest::coreneuron_cpu_mpi_offline | |
| 17/120 Test #55: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 2.12 sec | |
| Start 61: testcorenrn_conc::coreneuron_cpu_offline | |
| 18/120 Test #58: testcorenrn_conc::neuron ........................................... Passed 3.01 sec | |
| Start 64: testcorenrn_deriv::neuron | |
| 19/120 Test #61: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 1.86 sec | |
| Start 65: testcorenrn_deriv::coreneuron_cpu_online | |
| 20/120 Test #45: external_ringtest::neuron_mpi ...................................... Passed 5.26 sec | |
| Start 66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| Start 67: testcorenrn_deriv::coreneuron_cpu_offline | |
| 21/120 Test #59: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 4.45 sec | |
| Start 76: testcorenrn_kin::neuron | |
| 22/120 Test #64: testcorenrn_deriv::neuron .......................................... Passed 1.90 sec | |
| Start 77: testcorenrn_kin::coreneuron_cpu_online | |
| 23/120 Test #60: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 4.59 sec | |
| Start 78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 24/120 Test #67: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 1.66 sec | |
| Start 79: testcorenrn_kin::coreneuron_cpu_offline | |
| 25/120 Test #65: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 2.48 sec | |
| Start 108: channel_benchmark_hippo::neuron | |
| 26/120 Test #76: testcorenrn_kin::neuron ............................................ Passed 1.88 sec | |
| Start 109: channel_benchmark_hippo::coreneuron_cpu_online | |
| 27/120 Test #66: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 3.60 sec | |
| Start 110: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 28/120 Test #79: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 4.04 sec | |
| Start 112: channel_benchmark_sscx::neuron | |
| 29/120 Test #48: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 9.38 sec | |
| Start 70: testcorenrn_gf::neuron | |
| 30/120 Test #78: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 5.26 sec | |
| Start 113: channel_benchmark_sscx::coreneuron_cpu_online | |
| 31/120 Test #77: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 5.60 sec | |
| Start 114: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 32/120 Test #47: external_ringtest::coreneuron_cpu_mpi .............................. Passed 11.50 sec | |
| Start 71: testcorenrn_gf::coreneuron_cpu_online | |
| 33/120 Test #70: testcorenrn_gf::neuron ............................................. Passed 8.34 sec | |
| Start 72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 34/120 Test #46: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 19.21 sec | |
| Start 73: testcorenrn_gf::coreneuron_cpu_offline | |
| 35/120 Test #71: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 12.20 sec | |
| Start 82: testcorenrn_patstim::neuron | |
| 36/120 Test #73: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 7.99 sec | |
| Start 83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 37/120 Test #82: testcorenrn_patstim::neuron ........................................ Passed 3.87 sec | |
| Start 84: testcorenrn_patstim::coreneuron_cpu_offline | |
| 38/120 Test #84: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 4.68 sec | |
| Start 87: testcorenrn_vecplay::neuron | |
| 39/120 Test #87: testcorenrn_vecplay::neuron ........................................ Passed 3.53 sec | |
| Start 88: testcorenrn_vecplay::coreneuron_cpu_online | |
| 40/120 Test #83: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 9.65 sec | |
| Start 89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 41/120 Test #72: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 20.54 sec | |
| Start 90: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 42/120 Test #90: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 3.31 sec | |
| Start 99: testcorenrn_watch::neuron | |
| 43/120 Test #88: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 7.19 sec | |
| Start 100: testcorenrn_watch::coreneuron_cpu_online | |
| 44/120 Test #99: testcorenrn_watch::neuron .......................................... Passed 3.74 sec | |
| Start 101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 45/120 Test #89: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 11.40 sec | |
| Start 102: testcorenrn_watch::coreneuron_cpu_offline | |
| 46/120 Test #100: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 7.20 sec | |
| Start 105: testcorenrn_netstimdirect::direct_netstimdirect | |
| 47/120 Test #102: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 3.01 sec | |
| Start 106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 48/120 Test #105: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 7.49 sec | |
| Start 1: testneuron | |
| Start 2: ringtest | |
| 49/120 Test #1: testneuron ......................................................... Passed 0.09 sec | |
| Start 3: connect_dend | |
| 50/120 Test #3: connect_dend ....................................................... Passed 0.16 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 51/120 Test #2: ringtest ........................................................... Passed 0.29 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 52/120 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.43 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 53/120 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.77 sec | |
| Start 7: mpi_init::python_mpienv | |
| 54/120 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.96 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 55/120 Test #101: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 12.97 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 56/120 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.59 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 57/120 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.77 sec | |
| Start 12: pynrn::basic_tests | |
| 58/120 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 2.14 sec | |
| Start 13: coverage_tests::cover_tests | |
| 59/120 Test #106: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 10.88 sec | |
| Start 14: parallel_tests | |
| Start 15: parallel_partrans | |
| 60/120 Test #7: mpi_init::python_mpienv ............................................ Passed 3.41 sec | |
| Start 16: parallel_netpar | |
| 61/120 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 3.95 sec | |
| Start 17: parallel_bas | |
| 62/120 Test #15: parallel_partrans .................................................. Passed 6.81 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 63/120 Test #16: parallel_netpar .................................................... Passed 6.75 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 64/120 Test #13: coverage_tests::cover_tests ........................................ Passed 7.76 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 65/120 Test #12: pynrn::basic_tests ................................................. Passed 11.71 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 66/120 Test #14: parallel_tests ..................................................... Passed 11.69 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 67/120 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 12.84 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 68/120 Test #17: parallel_bas ....................................................... Passed 25.60 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 69/120 Test #18: coreneuron_modtests::version_macros ................................ Passed 73.30 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 70/120 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 74.30 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 71/120 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 75.73 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 72/120 Test #41: reduced_dentate::neuron ............................................ Passed 148.45 sec | |
| Start 42: reduced_dentate::coreneuron_cpu | |
| 73/120 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 75.10 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 74/120 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 76.85 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 75/120 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 79.24 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 76/120 Test #113: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 160.29 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 77/120 Test #114: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 162.14 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 78/120 Test #109: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 167.61 sec | |
| Start 36: modlunit_unitstest | |
| 79/120 Test #36: modlunit_unitstest ................................................. Passed 0.03 sec | |
| Start 37: modlunit_hh | |
| 80/120 Test #37: modlunit_hh ........................................................ Passed 0.04 sec | |
| Start 38: modlunit_stim | |
| 81/120 Test #38: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 39: modlunit_pattern | |
| 82/120 Test #39: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 40: external_nrntest | |
| 83/120 Test #112: channel_benchmark_sscx::neuron ..................................... Passed 164.34 sec | |
| Start 57: testcorenrn_bbcore::compare_results | |
| 84/120 Test #57: testcorenrn_bbcore::compare_results ................................ Passed 0.27 sec | |
| Start 63: testcorenrn_conc::compare_results | |
| 85/120 Test #63: testcorenrn_conc::compare_results .................................. Passed 0.24 sec | |
| Start 69: testcorenrn_deriv::compare_results | |
| 86/120 Test #69: testcorenrn_deriv::compare_results ................................. Passed 0.08 sec | |
| Start 75: testcorenrn_gf::compare_results | |
| 87/120 Test #110: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 167.16 sec | |
| Start 81: testcorenrn_kin::compare_results | |
| 88/120 Test #75: testcorenrn_gf::compare_results .................................... Passed 0.14 sec | |
| Start 86: testcorenrn_patstim::compare_results | |
| 89/120 Test #81: testcorenrn_kin::compare_results ................................... Passed 0.24 sec | |
| Start 92: testcorenrn_vecplay::compare_results | |
| 90/120 Test #108: channel_benchmark_hippo::neuron .................................... Passed 169.04 sec | |
| Start 104: testcorenrn_watch::compare_results | |
| 91/120 Test #86: testcorenrn_patstim::compare_results ............................... Passed 0.41 sec | |
| Start 107: testcorenrn_netstimdirect::compare_results | |
| 92/120 Test #107: testcorenrn_netstimdirect::compare_results ......................... Passed 0.86 sec | |
| Start 111: channel_benchmark_hippo::compare_results | |
| 93/120 Test #104: testcorenrn_watch::compare_results ................................. Passed 1.36 sec | |
| Start 115: channel_benchmark_sscx::compare_results | |
| 94/120 Test #111: channel_benchmark_hippo::compare_results ........................... Passed 1.02 sec | |
| 95/120 Test #92: testcorenrn_vecplay::compare_results ............................... Passed 2.53 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 96/120 Test #115: channel_benchmark_sscx::compare_results ............................ Passed 1.19 sec | |
| 97/120 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 5.63 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 98/120 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 42.22 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 99/120 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 44.02 sec | |
| 100/120 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 47.61 sec | |
| 101/120 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 6.32 sec | |
| Start 93: testcorenrn_vecevent::neuron | |
| 102/120 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 5.13 sec | |
| 103/120 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 28.03 sec | |
| 104/120 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 20.05 sec | |
| Start 94: testcorenrn_vecevent::coreneuron_cpu_online | |
| 105/120 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 21.25 sec | |
| 106/120 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 18.24 sec | |
| 107/120 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 42.99 sec | |
| 108/120 Test #93: testcorenrn_vecevent::neuron ....................................... Passed 3.39 sec | |
| Start 50: external_ringtest::coreneuron_cpu_mpi_threads | |
| 109/120 Test #94: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 5.84 sec | |
| Start 95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 110/120 Test #50: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 3.93 sec | |
| Start 96: testcorenrn_vecevent::coreneuron_cpu_offline | |
| Start 51: external_ringtest::compare_results | |
| 111/120 Test #51: external_ringtest::compare_results ................................. Passed 0.63 sec | |
| 112/120 Test #96: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 4.13 sec | |
| Start 116: olfactory-bulb-3d::neuron | |
| 113/120 Test #95: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 5.84 sec | |
| Start 118: olfactory-bulb-3d::coreneuron_cpu_online | |
| Start 98: testcorenrn_vecevent::compare_results | |
| 114/120 Test #98: testcorenrn_vecevent::compare_results .............................. Passed 0.85 sec | |
| 115/120 Test #42: reduced_dentate::coreneuron_cpu .................................... Passed 56.37 sec | |
| Start 43: reduced_dentate::compare_results | |
| 116/120 Test #43: reduced_dentate::compare_results ................................... Passed 0.15 sec | |
| 117/120 Test #40: external_nrntest ................................................... Passed 120.46 sec | |
| 118/120 Test #118: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 119.57 sec | |
| 119/120 Test #116: olfactory-bulb-3d::neuron .......................................... Passed 123.43 sec | |
| Start 120: olfactory-bulb-3d::compare_results | |
| 120/120 Test #120: olfactory-bulb-3d::compare_results ................................. Passed 0.17 sec | |
| 100% tests passed, 0 tests failed out of 120 | |
| Total Test time (real) = 329.92 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655888800:step_script [0Ksection_start:1655888800:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=15923 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272603 responseStatus[0;m=201 Created token[0;m=64KrnGWZ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=15981 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272603 responseStatus[0;m=201 Created token[0;m=64KrnGWZ | |
| section_end:1655888801:upload_artifacts_on_success [0Ksection_start:1655888801:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655888802:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655889532:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655889532:resolve_secrets [0Ksection_start:1655889532:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor343096201, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272600 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272600_PROD_P112_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 564017 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272600_PROD_P112_CP0_C0 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=16 --jobid=564017 --cpus-per-task=1 --mem=76G | |
| section_end:1655889533:prepare_executor [0Ksection_start:1655889533:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655889540:prepare_script [0Ksection_start:1655889540:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655889541:get_sources [0Ksection_start:1655889541:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:acc (272577)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=33327 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272577 responseStatus[0;m=200 OK token[0;m=BqwBC8nC | |
| section_end:1655889542:download_artifacts [0Ksection_start:1655889542:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n30 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0919 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272577/spack-build/spack-stage-neuron-develop-f6nikkkl3jokiiz56xke2nvdgfsrjose/spack-build-f6nikkk | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 89: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 93: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 99: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 103: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 109: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 113: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 119: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 123: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/184 Test #79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 1.96 sec | |
| Start 128: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/184 Test #83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 2.01 sec | |
| Start 62: external_ringtest::neuron | |
| 3/184 Test #119: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 3.50 sec | |
| Start 75: testcorenrn_bbcore::neuron | |
| 4/184 Test #89: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 3.66 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/184 Test #93: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 3.75 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/184 Test #109: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 3.79 sec | |
| Start 131: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 7/184 Test #123: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 3.90 sec | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 8/184 Test #103: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 4.00 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online | |
| 9/184 Test #99: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 4.05 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 10/184 Test #113: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 4.28 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 11/184 Test #62: external_ringtest::neuron .......................................... Passed 2.37 sec | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 12/184 Test #128: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 2.82 sec | |
| Start 85: testcorenrn_conc::neuron | |
| 13/184 Test #75: testcorenrn_bbcore::neuron ......................................... Passed 3.15 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online | |
| 14/184 Test #131: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 4.06 sec | |
| Start 141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 15/184 Test #85: testcorenrn_conc::neuron ........................................... Passed 3.29 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 16/184 Test #137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 4.09 sec | |
| Start 157: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 17/184 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 7.11 sec | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline | |
| 18/184 Test #72: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 14.08 sec | |
| Start 161: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 19/184 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 11.67 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online | |
| 20/184 Test #76: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 12.88 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 21/184 Test #80: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 14.73 sec | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline | |
| 22/184 Test #81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 14.95 sec | |
| Start 95: testcorenrn_deriv::neuron | |
| 23/184 Test #67: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 19.33 sec | |
| Start 63: external_ringtest::neuron_mpi | |
| 24/184 Test #141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 11.55 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 25/184 Test #157: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 11.58 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi | |
| 26/184 Test #161: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 8.54 sec | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline | |
| 27/184 Test #95: testcorenrn_deriv::neuron .......................................... Passed 4.39 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online | |
| 28/184 Test #77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 22.46 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 29/184 Test #63: external_ringtest::neuron_mpi ...................................... Passed 7.19 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 30/184 Test #88: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 27.75 sec | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline | |
| 31/184 Test #86: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 34.56 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online | |
| 32/184 Test #87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 33.27 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 33/184 Test #92: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 24.91 sec | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline | |
| 34/184 Test #90: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 28.06 sec | |
| Start 115: testcorenrn_kin::neuron | |
| 35/184 Test #91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 27.17 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online | |
| 36/184 Test #115: testcorenrn_kin::neuron ............................................ Passed 1.51 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 37/184 Test #66: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 27.04 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi | |
| 38/184 Test #65: external_ringtest::coreneuron_cpu_mpi .............................. Passed 39.60 sec | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline | |
| 39/184 Test #96: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 47.45 sec | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline | |
| 40/184 Test #100: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 29.70 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online | |
| 41/184 Test #101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 29.68 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 42/184 Test #98: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 31.25 sec | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline | |
| 43/184 Test #97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 44.96 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 44/184 Test #102: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 31.44 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline | |
| 45/184 Test #116: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 31.66 sec | |
| Start 166: channel_benchmark_hippo::neuron | |
| 46/184 Test #117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 48.10 sec | |
| Start 167: channel_benchmark_hippo::coreneuron_gpu_online | |
| 47/184 Test #70: external_ringtest::coreneuron_gpu_mpi .............................. Passed 43.74 sec | |
| Start 105: testcorenrn_gf::neuron | |
| 48/184 Test #105: testcorenrn_gf::neuron ............................................. Passed 4.15 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online | |
| 49/184 Test #71: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 62.26 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 50/184 Test #120: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 54.99 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 51/184 Test #121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 61.40 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_cpu_online | |
| 52/184 Test #166: channel_benchmark_hippo::neuron .................................... Passed 59.60 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 53/184 Test #118: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 65.44 sec | |
| Start 172: channel_benchmark_sscx::neuron | |
| 54/184 Test #122: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 65.73 sec | |
| Start 173: channel_benchmark_sscx::coreneuron_gpu_online | |
| 55/184 Test #127: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 75.94 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 56/184 Test #106: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 91.01 sec | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline | |
| 57/184 Test #126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 144.63 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_cpu_online | |
| 58/184 Test #107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 119.22 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online | |
| 59/184 Test #172: channel_benchmark_sscx::neuron ..................................... Passed 120.03 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 60/184 Test #64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 245.52 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 61/184 Test #69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 238.93 sec | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline | |
| 62/184 Test #167: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 177.82 sec | |
| Start 1: testneuron | |
| 63/184 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 64/184 Test #2: ringtest ........................................................... Passed 0.29 sec | |
| Start 3: connect_dend | |
| 65/184 Test #3: connect_dend ....................................................... Passed 0.14 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 66/184 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.40 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 67/184 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.15 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 68/184 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.63 sec | |
| Start 7: mpi_init::python_mpienv | |
| 69/184 Test #7: mpi_init::python_mpienv ............................................ Passed 1.47 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 70/184 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.57 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 71/184 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.39 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 72/184 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 1.84 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 73/184 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 3.08 sec | |
| Start 12: pynrn::basic_tests | |
| 74/184 Test #108: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 94.97 sec | |
| Start 125: testcorenrn_patstim::neuron | |
| 75/184 Test #125: testcorenrn_patstim::neuron ........................................ Passed 1.93 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 76/184 Test #12: pynrn::basic_tests ................................................. Passed 4.59 sec | |
| Start 13: coverage_tests::cover_tests | |
| 77/184 Test #13: coverage_tests::cover_tests ........................................ Passed 2.13 sec | |
| Start 14: parallel_tests | |
| 78/184 Test #14: parallel_tests ..................................................... Passed 3.02 sec | |
| Start 15: parallel_partrans | |
| 79/184 Test #15: parallel_partrans .................................................. Passed 1.72 sec | |
| Start 16: parallel_netpar | |
| 80/184 Test #16: parallel_netpar .................................................... Passed 1.89 sec | |
| Start 17: parallel_bas | |
| 81/184 Test #17: parallel_bas ....................................................... Passed 2.67 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 82/184 Test #168: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 191.54 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 83/184 Test #169: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 185.60 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 84/184 Test #173: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 181.47 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 85/184 Test #170: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 193.14 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 86/184 Test #110: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 87.24 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline | |
| 87/184 Test #112: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 63.01 sec | |
| Start 133: testcorenrn_vecplay::neuron | |
| 88/184 Test #133: testcorenrn_vecplay::neuron ........................................ Passed 2.37 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online | |
| 89/184 Test #111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 74.85 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 90/184 Test #18: coreneuron_modtests::version_macros ................................ Passed 52.96 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 91/184 Test #175: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 135.58 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 92/184 Test #174: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 200.66 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 93/184 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 0.43 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 94/184 Test #176: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 99.80 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 95/184 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 44.45 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 96/184 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 45.07 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 97/184 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 55.25 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 98/184 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 46.56 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 99/184 Test #130: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 54.90 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 100/184 Test #134: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 64.34 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online | |
| 101/184 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 43.35 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 102/184 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 44.07 sec | |
| Start 36: coreneuron_modtests::fornetcon_py_gpu | |
| 103/184 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 39.09 sec | |
| Start 37: coreneuron_modtests::direct_py_gpu | |
| 104/184 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 43.58 sec | |
| Start 38: coreneuron_modtests::direct_hoc_gpu | |
| 105/184 Test #129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 110.40 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 106/184 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 35.99 sec | |
| Start 39: coreneuron_modtests::spikes_py_gpu | |
| 107/184 Test #135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 60.85 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 108/184 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 36.42 sec | |
| Start 40: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 109/184 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 42.35 sec | |
| Start 41: coreneuron_modtests::fast_imem_py_gpu | |
| 110/184 Test #41: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 0.54 sec | |
| Start 42: coreneuron_modtests::datareturn_py_gpu | |
| 111/184 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 43.72 sec | |
| Start 153: testcorenrn_watch::neuron | |
| 112/184 Test #153: testcorenrn_watch::neuron .......................................... Passed 2.90 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online | |
| 113/184 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 38.60 sec | |
| Start 43: coreneuron_modtests::test_units_py_gpu | |
| 114/184 Test #38: coreneuron_modtests::direct_hoc_gpu ................................ Passed 40.33 sec | |
| Start 44: coreneuron_modtests::test_netmove_py_gpu | |
| 115/184 Test #37: coreneuron_modtests::direct_py_gpu ................................. Passed 40.63 sec | |
| Start 45: coreneuron_modtests::test_pointer_py_gpu | |
| 116/184 Test #39: coreneuron_modtests::spikes_py_gpu ................................. Passed 37.39 sec | |
| Start 46: coreneuron_modtests::test_watchrange_py_gpu | |
| 117/184 Test #36: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 42.29 sec | |
| Start 47: coreneuron_modtests::test_psolve_py_gpu | |
| 118/184 Test #139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 43.58 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 119/184 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 38.95 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline | |
| 120/184 Test #138: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 44.61 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online | |
| 121/184 Test #40: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 41.25 sec | |
| Start 48: coreneuron_modtests::test_ba_py_gpu | |
| 122/184 Test #42: coreneuron_modtests::datareturn_py_gpu ............................. Passed 36.49 sec | |
| Start 49: coreneuron_modtests::test_natrans_py_gpu | |
| 123/184 Test #43: coreneuron_modtests::test_units_py_gpu ............................. Passed 30.92 sec | |
| Start 53: modlunit_unitstest | |
| 124/184 Test #53: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 54: modlunit_hh | |
| 125/184 Test #54: modlunit_hh ........................................................ Passed 0.02 sec | |
| Start 55: modlunit_stim | |
| 126/184 Test #55: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 56: modlunit_pattern | |
| 127/184 Test #56: modlunit_pattern ................................................... Passed 0.02 sec | |
| Start 57: external_nrntest | |
| 128/184 Test #154: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 35.16 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 129/184 Test #47: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 27.94 sec | |
| Start 84: testcorenrn_bbcore::compare_results | |
| 130/184 Test #44: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 30.14 sec | |
| Start 94: testcorenrn_conc::compare_results | |
| 131/184 Test #84: testcorenrn_bbcore::compare_results ................................ Passed 0.39 sec | |
| Start 104: testcorenrn_deriv::compare_results | |
| 132/184 Test #104: testcorenrn_deriv::compare_results ................................. Passed 0.36 sec | |
| Start 114: testcorenrn_gf::compare_results | |
| 133/184 Test #46: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 30.34 sec | |
| Start 124: testcorenrn_kin::compare_results | |
| 134/184 Test #94: testcorenrn_conc::compare_results .................................. Passed 0.76 sec | |
| Start 132: testcorenrn_patstim::compare_results | |
| 135/184 Test #114: testcorenrn_gf::compare_results .................................... Passed 0.44 sec | |
| Start 142: testcorenrn_vecplay::compare_results | |
| 136/184 Test #124: testcorenrn_kin::compare_results ................................... Passed 0.51 sec | |
| Start 171: channel_benchmark_hippo::compare_results | |
| 137/184 Test #171: channel_benchmark_hippo::compare_results ........................... Passed 0.21 sec | |
| Start 177: channel_benchmark_sscx::compare_results | |
| 138/184 Test #132: testcorenrn_patstim::compare_results ............................... Passed 0.60 sec | |
| 139/184 Test #142: testcorenrn_vecplay::compare_results ............................... Passed 0.56 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline | |
| 140/184 Test #177: channel_benchmark_sscx::compare_results ............................ Passed 0.43 sec | |
| 141/184 Test #158: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 42.14 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect | |
| 142/184 Test #156: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 42.49 sec | |
| Start 164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 143/184 Test #155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 43.39 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 144/184 Test #48: coreneuron_modtests::test_ba_py_gpu ................................ Passed 35.33 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 145/184 Test #49: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 33.15 sec | |
| 146/184 Test #160: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 33.39 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 147/184 Test #159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 40.04 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_py_gpu | |
| Start 162: testcorenrn_watch::compare_results | |
| 148/184 Test #162: testcorenrn_watch::compare_results ................................. Passed 0.06 sec | |
| 149/184 Test #163: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 32.49 sec | |
| Start 51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 150/184 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 37.75 sec | |
| Start 52: coreneuron_modtests::inputpresyn_py_gpu | |
| 151/184 Test #164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 38.65 sec | |
| Start 165: testcorenrn_netstimdirect::compare_results | |
| 152/184 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 34.28 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 153/184 Test #165: testcorenrn_netstimdirect::compare_results ......................... Passed 0.68 sec | |
| 154/184 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 25.76 sec | |
| 155/184 Test #147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 8.15 sec | |
| Start 151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 156/184 Test #151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 3.12 sec | |
| Start 179: olfactory-bulb-3d::neuron::preparation | |
| 157/184 Test #179: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.02 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 158/184 Test #181: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.02 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 159/184 Test #183: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.01 sec | |
| Start 58: reduced_dentate::neuron | |
| 160/184 Test #51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 19.93 sec | |
| Start 59: reduced_dentate::coreneuron_cpu | |
| 161/184 Test #50: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 32.64 sec | |
| 162/184 Test #58: reduced_dentate::neuron ............................................ Passed 21.35 sec | |
| Start 60: reduced_dentate::coreneuron_gpu | |
| 163/184 Test #52: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 38.10 sec | |
| Start 143: testcorenrn_vecevent::neuron | |
| 164/184 Test #143: testcorenrn_vecevent::neuron ....................................... Passed 5.65 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online | |
| 165/184 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 210.76 sec | |
| 166/184 Test #59: reduced_dentate::coreneuron_cpu .................................... Passed 44.99 sec | |
| Start 68: external_ringtest::coreneuron_cpu_mpi_threads | |
| 167/184 Test #60: reduced_dentate::coreneuron_gpu .................................... Passed 26.00 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| 168/184 Test #45: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 150.40 sec | |
| Start 61: reduced_dentate::compare_results | |
| 169/184 Test #61: reduced_dentate::compare_results ................................... Passed 1.82 sec | |
| 170/184 Test #144: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 24.65 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 171/184 Test #68: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 11.15 sec | |
| Start 73: external_ringtest::coreneuron_gpu_mpi_threads | |
| 172/184 Test #57: external_nrntest ................................................... Passed 134.40 sec | |
| 173/184 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 19.06 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online | |
| 174/184 Test #73: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 20.72 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 175/184 Test #145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 35.64 sec | |
| Start 178: olfactory-bulb-3d::neuron | |
| 176/184 Test #148: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 32.31 sec | |
| Start 180: olfactory-bulb-3d::coreneuron_gpu_online | |
| 177/184 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 29.66 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online | |
| 178/184 Test #149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 43.58 sec | |
| Start 74: external_ringtest::compare_results | |
| Start 152: testcorenrn_vecevent::compare_results | |
| 179/184 Test #152: testcorenrn_vecevent::compare_results .............................. Passed 0.30 sec | |
| 180/184 Test #74: external_ringtest::compare_results ................................. Passed 0.30 sec | |
| 181/184 Test #178: olfactory-bulb-3d::neuron .......................................... Passed 120.41 sec | |
| 182/184 Test #180: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 122.44 sec | |
| 183/184 Test #182: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 123.79 sec | |
| Start 184: olfactory-bulb-3d::compare_results | |
| 184/184 Test #184: olfactory-bulb-3d::compare_results ................................. Passed 0.23 sec | |
| 100% tests passed, 0 tests failed out of 184 | |
| Total Test time (real) = 765.00 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655890333:step_script [0Ksection_start:1655890333:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=54581 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272600 responseStatus[0;m=201 Created token[0;m=jyxMPny- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=54672 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272600 responseStatus[0;m=201 Created token[0;m=jyxMPny- | |
| section_end:1655890335:upload_artifacts_on_success [0Ksection_start:1655890335:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655890336:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 14.3.2 (e0218c92)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1655889535:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1655889535:resolve_secrets [0Ksection_start:1655889535:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 14.3.2, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor826182054, slurm job id | |
| Runner ID 29, project root hpc, project name coreneuron | |
| Pipeline ID 61704, build ref 6f9c31e54f65ead9165e43fe268144873a37c0c1, job ID 272598 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag | |
| A slurm job will be created with name GL_J272598_PROD_P112_CP1_C1 | |
| Job parameters: memory=76G, cpus_per_task=1, duration=1:00:00, constraint=volta ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| Submitted batch job 564018 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=76G --job-name=GL_J272598_PROD_P112_CP1_C1 -C volta --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P61704 --ntasks=16 --jobid=564018 --cpus-per-task=1 --mem=76G | |
| section_end:1655889536:prepare_executor [0Ksection_start:1655889536:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on ldir01u09.bbp.epfl.ch via bbpv1.epfl.ch... | |
| section_end:1655889543:prepare_script [0Ksection_start:1655889543:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1655889544:get_sources [0Ksection_start:1655889544:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| [32;1mDownloading artifacts for build:neuron:nmodl:nvhpc:omp (272575)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=34061 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=272575 responseStatus[0;m=200 OK token[0;m=pexsvbLh | |
| section_end:1655889545:download_artifacts [0Ksection_start:1655889545:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
| [32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
| [32;1m$ i_am_a_failure=0[0;m | |
| [32;1m$ spack build-env ${SPACK_FULL_SPEC} -- ctest --output-on-failure -T Test || i_am_a_failure=1[0;m | |
| Site: r1i6n30 | |
| Build name: Linux-nvc++ | |
| Create new tag: 20220622-0919 - Experimental | |
| Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P61704/J272575/spack-build/spack-stage-neuron-develop-2supl4esjx3ghhb3azj32rf6llwrd6wk/spack-build-2supl4e | |
| Start 67: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 72: external_ringtest::coreneuron_gpu_mpi_offline::preparation | |
| Start 79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation | |
| Start 83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| Start 89: testcorenrn_conc::coreneuron_gpu_offline::preparation | |
| Start 93: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| Start 99: testcorenrn_deriv::coreneuron_gpu_offline::preparation | |
| Start 103: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| Start 109: testcorenrn_gf::coreneuron_gpu_offline::preparation | |
| Start 113: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| Start 119: testcorenrn_kin::coreneuron_gpu_offline::preparation | |
| Start 123: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 1/184 Test #79: testcorenrn_bbcore::coreneuron_gpu_offline::preparation ............ Passed 2.53 sec | |
| Start 128: testcorenrn_patstim::coreneuron_gpu_offline::preparation | |
| 2/184 Test #89: testcorenrn_conc::coreneuron_gpu_offline::preparation .............. Passed 2.63 sec | |
| Start 62: external_ringtest::neuron | |
| 3/184 Test #93: testcorenrn_conc::coreneuron_cpu_offline::preparation .............. Passed 2.94 sec | |
| Start 75: testcorenrn_bbcore::neuron | |
| 4/184 Test #123: testcorenrn_kin::coreneuron_cpu_offline::preparation ............... Passed 4.15 sec | |
| Start 76: testcorenrn_bbcore::coreneuron_gpu_online | |
| 5/184 Test #119: testcorenrn_kin::coreneuron_gpu_offline::preparation ............... Passed 4.19 sec | |
| Start 77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate | |
| 6/184 Test #83: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ............ Passed 5.54 sec | |
| Start 78: testcorenrn_bbcore::coreneuron_gpu_offline | |
| 7/184 Test #103: testcorenrn_deriv::coreneuron_cpu_offline::preparation ............. Passed 7.73 sec | |
| Start 80: testcorenrn_bbcore::coreneuron_cpu_online | |
| 8/184 Test #109: testcorenrn_gf::coreneuron_gpu_offline::preparation ................ Passed 11.05 sec | |
| Start 131: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 9/184 Test #113: testcorenrn_gf::coreneuron_cpu_offline::preparation ................ Passed 11.51 sec | |
| Start 137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation | |
| 10/184 Test #128: testcorenrn_patstim::coreneuron_gpu_offline::preparation ........... Passed 9.90 sec | |
| Start 81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 11/184 Test #75: testcorenrn_bbcore::neuron ......................................... Passed 9.79 sec | |
| Start 82: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 12/184 Test #99: testcorenrn_deriv::coreneuron_gpu_offline::preparation ............. Passed 12.77 sec | |
| Start 85: testcorenrn_conc::neuron | |
| 13/184 Test #62: external_ringtest::neuron .......................................... Passed 12.16 sec | |
| Start 86: testcorenrn_conc::coreneuron_gpu_online | |
| 14/184 Test #78: testcorenrn_bbcore::coreneuron_gpu_offline ......................... Passed 10.55 sec | |
| Start 87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate | |
| 15/184 Test #131: testcorenrn_patstim::coreneuron_cpu_offline::preparation ........... Passed 6.53 sec | |
| Start 141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 16/184 Test #85: testcorenrn_conc::neuron ........................................... Passed 4.83 sec | |
| Start 88: testcorenrn_conc::coreneuron_gpu_offline | |
| 17/184 Test #137: testcorenrn_vecplay::coreneuron_gpu_offline::preparation ........... Passed 7.34 sec | |
| Start 157: testcorenrn_watch::coreneuron_gpu_offline::preparation | |
| 18/184 Test #141: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ........... Passed 3.05 sec | |
| Start 161: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 19/184 Test #157: testcorenrn_watch::coreneuron_gpu_offline::preparation ............. Passed 1.81 sec | |
| Start 63: external_ringtest::neuron_mpi | |
| 20/184 Test #161: testcorenrn_watch::coreneuron_cpu_offline::preparation ............. Passed 1.54 sec | |
| Start 64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 21/184 Test #63: external_ringtest::neuron_mpi ...................................... Passed 2.21 sec | |
| Start 65: external_ringtest::coreneuron_cpu_mpi | |
| 22/184 Test #76: testcorenrn_bbcore::coreneuron_gpu_online .......................... Passed 30.06 sec | |
| Start 90: testcorenrn_conc::coreneuron_cpu_online | |
| 23/184 Test #67: external_ringtest::coreneuron_cpu_mpi_offline::preparation ......... Passed 34.45 sec | |
| Start 66: external_ringtest::coreneuron_cpu_mpi_offline | |
| 24/184 Test #72: external_ringtest::coreneuron_gpu_mpi_offline::preparation ......... Passed 35.69 sec | |
| Start 69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore | |
| 25/184 Test #80: testcorenrn_bbcore::coreneuron_cpu_online .......................... Passed 30.10 sec | |
| Start 91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 26/184 Test #82: testcorenrn_bbcore::coreneuron_cpu_offline ......................... Passed 29.94 sec | |
| Start 92: testcorenrn_conc::coreneuron_cpu_offline | |
| 27/184 Test #77: testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate ......... Passed 38.65 sec | |
| Start 95: testcorenrn_deriv::neuron | |
| 28/184 Test #81: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......... Passed 30.53 sec | |
| Start 96: testcorenrn_deriv::coreneuron_gpu_online | |
| 29/184 Test #95: testcorenrn_deriv::neuron .......................................... Passed 1.58 sec | |
| Start 97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate | |
| 30/184 Test #87: testcorenrn_conc::coreneuron_gpu_online_psolve_alternate ........... Passed 36.23 sec | |
| Start 98: testcorenrn_deriv::coreneuron_gpu_offline | |
| 31/184 Test #86: testcorenrn_conc::coreneuron_gpu_online ............................ Passed 49.17 sec | |
| Start 100: testcorenrn_deriv::coreneuron_cpu_online | |
| 32/184 Test #88: testcorenrn_conc::coreneuron_gpu_offline ........................... Passed 46.34 sec | |
| Start 101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 33/184 Test #90: testcorenrn_conc::coreneuron_cpu_online ............................ Passed 29.91 sec | |
| Start 102: testcorenrn_deriv::coreneuron_cpu_offline | |
| 34/184 Test #65: external_ringtest::coreneuron_cpu_mpi .............................. Passed 41.16 sec | |
| Start 70: external_ringtest::coreneuron_gpu_mpi | |
| 35/184 Test #66: external_ringtest::coreneuron_cpu_mpi_offline ...................... Passed 29.98 sec | |
| Start 71: external_ringtest::coreneuron_gpu_mpi_offline | |
| 36/184 Test #91: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........... Passed 30.46 sec | |
| Start 115: testcorenrn_kin::neuron | |
| 37/184 Test #115: testcorenrn_kin::neuron ............................................ Passed 2.10 sec | |
| Start 116: testcorenrn_kin::coreneuron_gpu_online | |
| 38/184 Test #96: testcorenrn_deriv::coreneuron_gpu_online ........................... Passed 43.35 sec | |
| Start 117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate | |
| 39/184 Test #92: testcorenrn_conc::coreneuron_cpu_offline ........................... Passed 43.66 sec | |
| Start 118: testcorenrn_kin::coreneuron_gpu_offline | |
| 40/184 Test #97: testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate .......... Passed 42.07 sec | |
| Start 120: testcorenrn_kin::coreneuron_cpu_online | |
| 41/184 Test #98: testcorenrn_deriv::coreneuron_gpu_offline .......................... Passed 46.14 sec | |
| Start 121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 42/184 Test #100: testcorenrn_deriv::coreneuron_cpu_online ........................... Passed 50.27 sec | |
| Start 122: testcorenrn_kin::coreneuron_cpu_offline | |
| 43/184 Test #101: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......... Passed 50.25 sec | |
| Start 126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore | |
| 44/184 Test #102: testcorenrn_deriv::coreneuron_cpu_offline .......................... Passed 50.98 sec | |
| Start 127: testcorenrn_patstim::coreneuron_gpu_offline | |
| 45/184 Test #116: testcorenrn_kin::coreneuron_gpu_online ............................. Passed 60.37 sec | |
| Start 166: channel_benchmark_hippo::neuron | |
| 46/184 Test #70: external_ringtest::coreneuron_gpu_mpi .............................. Passed 79.80 sec | |
| Start 105: testcorenrn_gf::neuron | |
| 47/184 Test #71: external_ringtest::coreneuron_gpu_mpi_offline ...................... Passed 79.73 sec | |
| Start 106: testcorenrn_gf::coreneuron_gpu_online | |
| 48/184 Test #120: testcorenrn_kin::coreneuron_cpu_online ............................. Passed 58.11 sec | |
| Start 167: channel_benchmark_hippo::coreneuron_gpu_online | |
| 49/184 Test #105: testcorenrn_gf::neuron ............................................. Passed 3.46 sec | |
| Start 107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate | |
| 50/184 Test #118: testcorenrn_kin::coreneuron_gpu_offline ............................ Passed 64.84 sec | |
| Start 168: channel_benchmark_hippo::coreneuron_gpu_filemode | |
| 51/184 Test #117: testcorenrn_kin::coreneuron_gpu_online_psolve_alternate ............ Passed 92.41 sec | |
| Start 169: channel_benchmark_hippo::coreneuron_cpu_online | |
| 52/184 Test #121: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............ Passed 80.33 sec | |
| Start 170: channel_benchmark_hippo::coreneuron_cpu_filemode | |
| 53/184 Test #122: testcorenrn_kin::coreneuron_cpu_offline ............................ Passed 64.97 sec | |
| Start 172: channel_benchmark_sscx::neuron | |
| 54/184 Test #127: testcorenrn_patstim::coreneuron_gpu_offline ........................ Passed 79.19 sec | |
| Start 173: channel_benchmark_sscx::coreneuron_gpu_online | |
| 55/184 Test #166: channel_benchmark_hippo::neuron .................................... Passed 65.84 sec | |
| Start 174: channel_benchmark_sscx::coreneuron_gpu_filemode | |
| 56/184 Test #64: external_ringtest::coreneuron_cpu_mpi_offline_saverestore .......... Passed 243.62 sec | |
| Start 108: testcorenrn_gf::coreneuron_gpu_offline | |
| 57/184 Test #126: testcorenrn_patstim::coreneuron_gpu_offline_saverestore ............ Passed 171.20 sec | |
| Start 175: channel_benchmark_sscx::coreneuron_cpu_online | |
| 58/184 Test #106: testcorenrn_gf::coreneuron_gpu_online .............................. Passed 147.37 sec | |
| Start 110: testcorenrn_gf::coreneuron_cpu_online | |
| 59/184 Test #107: testcorenrn_gf::coreneuron_gpu_online_psolve_alternate ............. Passed 146.65 sec | |
| Start 111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 60/184 Test #172: channel_benchmark_sscx::neuron ..................................... Passed 131.06 sec | |
| Start 176: channel_benchmark_sscx::coreneuron_cpu_filemode | |
| 61/184 Test #69: external_ringtest::coreneuron_gpu_mpi_offline_saverestore .......... Passed 284.24 sec | |
| Start 112: testcorenrn_gf::coreneuron_cpu_offline | |
| 62/184 Test #167: channel_benchmark_hippo::coreneuron_gpu_online ..................... Passed 177.36 sec | |
| Start 1: testneuron | |
| 63/184 Test #1: testneuron ......................................................... Passed 0.06 sec | |
| Start 2: ringtest | |
| 64/184 Test #2: ringtest ........................................................... Passed 0.24 sec | |
| Start 3: connect_dend | |
| 65/184 Test #3: connect_dend ....................................................... Passed 0.16 sec | |
| Start 4: mpi_init::nrniv_mpiopt | |
| 66/184 Test #4: mpi_init::nrniv_mpiopt ............................................. Passed 0.44 sec | |
| Start 5: mpi_init::nrniv_nrnmpi_init | |
| 67/184 Test #5: mpi_init::nrniv_nrnmpi_init ........................................ Passed 0.16 sec | |
| Start 6: mpi_init::python_nrnmpi_init | |
| 68/184 Test #6: mpi_init::python_nrnmpi_init ....................................... Passed 0.66 sec | |
| Start 7: mpi_init::python_mpienv | |
| 69/184 Test #7: mpi_init::python_mpienv ............................................ Passed 1.94 sec | |
| Start 8: mpi_init::nrniv_mpiexec_mpiopt | |
| 70/184 Test #8: mpi_init::nrniv_mpiexec_mpiopt ..................................... Passed 1.59 sec | |
| Start 9: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 71/184 Test #9: mpi_init::nrniv_mpiexec_nrnmpi_init ................................ Passed 1.36 sec | |
| Start 10: mpi_init::python_mpiexec_nrnmpi_init | |
| 72/184 Test #10: mpi_init::python_mpiexec_nrnmpi_init ............................... Passed 1.85 sec | |
| Start 11: mpi_init::python_mpiexec_mpienv | |
| 73/184 Test #11: mpi_init::python_mpiexec_mpienv .................................... Passed 2.61 sec | |
| Start 12: pynrn::basic_tests | |
| 74/184 Test #12: pynrn::basic_tests ................................................. Passed 4.31 sec | |
| Start 13: coverage_tests::cover_tests | |
| 75/184 Test #13: coverage_tests::cover_tests ........................................ Passed 2.11 sec | |
| Start 14: parallel_tests | |
| 76/184 Test #168: channel_benchmark_hippo::coreneuron_gpu_filemode ................... Passed 194.36 sec | |
| Start 15: parallel_partrans | |
| 77/184 Test #14: parallel_tests ..................................................... Passed 7.28 sec | |
| Start 16: parallel_netpar | |
| 78/184 Test #15: parallel_partrans .................................................. Passed 3.91 sec | |
| Start 17: parallel_bas | |
| 79/184 Test #108: testcorenrn_gf::coreneuron_gpu_offline ............................. Passed 84.85 sec | |
| Start 125: testcorenrn_patstim::neuron | |
| 80/184 Test #16: parallel_netpar .................................................... Passed 3.98 sec | |
| Start 18: coreneuron_modtests::version_macros | |
| 81/184 Test #110: testcorenrn_gf::coreneuron_cpu_online .............................. Passed 60.88 sec | |
| Start 129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 82/184 Test #125: testcorenrn_patstim::neuron ........................................ Passed 3.26 sec | |
| Start 130: testcorenrn_patstim::coreneuron_cpu_offline | |
| 83/184 Test #111: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ............. Passed 59.82 sec | |
| Start 133: testcorenrn_vecplay::neuron | |
| 84/184 Test #133: testcorenrn_vecplay::neuron ........................................ Passed 2.83 sec | |
| Start 134: testcorenrn_vecplay::coreneuron_gpu_online | |
| 85/184 Test #169: channel_benchmark_hippo::coreneuron_cpu_online ..................... Passed 178.20 sec | |
| Start 19: coreneuron_modtests::fornetcon_py_cpu | |
| 86/184 Test #17: parallel_bas ....................................................... Passed 13.99 sec | |
| Start 20: coreneuron_modtests::direct_py_cpu | |
| 87/184 Test #170: channel_benchmark_hippo::coreneuron_cpu_filemode ................... Passed 189.03 sec | |
| Start 21: coreneuron_modtests::direct_hoc_cpu | |
| 88/184 Test #112: testcorenrn_gf::coreneuron_cpu_offline ............................. Passed 48.08 sec | |
| Start 135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate | |
| 89/184 Test #174: channel_benchmark_sscx::coreneuron_gpu_filemode .................... Passed 171.54 sec | |
| Start 22: coreneuron_modtests::spikes_py_cpu | |
| 90/184 Test #173: channel_benchmark_sscx::coreneuron_gpu_online ...................... Passed 174.16 sec | |
| Start 23: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 91/184 Test #175: channel_benchmark_sscx::coreneuron_cpu_online ...................... Passed 104.11 sec | |
| Start 24: coreneuron_modtests::fast_imem_py_cpu | |
| 92/184 Test #24: coreneuron_modtests::fast_imem_py_cpu .............................. Passed 0.80 sec | |
| Start 25: coreneuron_modtests::datareturn_py_cpu | |
| 93/184 Test #19: coreneuron_modtests::fornetcon_py_cpu .............................. Passed 35.62 sec | |
| Start 26: coreneuron_modtests::test_units_py_cpu | |
| 94/184 Test #18: coreneuron_modtests::version_macros ................................ Passed 41.72 sec | |
| Start 27: coreneuron_modtests::test_netmove_py_cpu | |
| 95/184 Test #130: testcorenrn_patstim::coreneuron_cpu_offline ........................ Passed 39.32 sec | |
| Start 136: testcorenrn_vecplay::coreneuron_gpu_offline | |
| 96/184 Test #134: testcorenrn_vecplay::coreneuron_gpu_online ......................... Passed 41.69 sec | |
| Start 138: testcorenrn_vecplay::coreneuron_cpu_online | |
| 97/184 Test #20: coreneuron_modtests::direct_py_cpu ................................. Passed 39.75 sec | |
| Start 28: coreneuron_modtests::test_pointer_py_cpu | |
| 98/184 Test #21: coreneuron_modtests::direct_hoc_cpu ................................ Passed 35.36 sec | |
| Start 29: coreneuron_modtests::test_watchrange_py_cpu | |
| 99/184 Test #23: coreneuron_modtests::spikes_file_mode_py_cpu ....................... Passed 34.81 sec | |
| Start 30: coreneuron_modtests::test_psolve_py_cpu | |
| 100/184 Test #22: coreneuron_modtests::spikes_py_cpu ................................. Passed 35.06 sec | |
| Start 31: coreneuron_modtests::test_ba_py_cpu | |
| 101/184 Test #176: channel_benchmark_sscx::coreneuron_cpu_filemode .................... Passed 94.01 sec | |
| Start 32: coreneuron_modtests::test_natrans_py_cpu | |
| 102/184 Test #27: coreneuron_modtests::test_netmove_py_cpu ........................... Passed 28.87 sec | |
| Start 36: coreneuron_modtests::fornetcon_py_gpu | |
| 103/184 Test #135: testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate ........ Passed 61.07 sec | |
| Start 139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 104/184 Test #25: coreneuron_modtests::datareturn_py_cpu ............................. Passed 41.17 sec | |
| Start 37: coreneuron_modtests::direct_py_gpu | |
| 105/184 Test #26: coreneuron_modtests::test_units_py_cpu ............................. Passed 39.48 sec | |
| Start 38: coreneuron_modtests::direct_hoc_gpu | |
| 106/184 Test #129: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ............ Passed 80.57 sec | |
| Start 140: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 107/184 Test #138: testcorenrn_vecplay::coreneuron_cpu_online ......................... Passed 36.29 sec | |
| Start 153: testcorenrn_watch::neuron | |
| 108/184 Test #136: testcorenrn_vecplay::coreneuron_gpu_offline ........................ Passed 41.69 sec | |
| Start 154: testcorenrn_watch::coreneuron_gpu_online | |
| 109/184 Test #153: testcorenrn_watch::neuron .......................................... Passed 1.58 sec | |
| Start 155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate | |
| 110/184 Test #31: coreneuron_modtests::test_ba_py_cpu ................................ Passed 40.70 sec | |
| Start 39: coreneuron_modtests::spikes_py_gpu | |
| 111/184 Test #32: coreneuron_modtests::test_natrans_py_cpu ........................... Passed 39.77 sec | |
| Start 40: coreneuron_modtests::spikes_file_mode_py_gpu | |
| 112/184 Test #29: coreneuron_modtests::test_watchrange_py_cpu ........................ Passed 40.82 sec | |
| Start 41: coreneuron_modtests::fast_imem_py_gpu | |
| 113/184 Test #30: coreneuron_modtests::test_psolve_py_cpu ............................ Passed 40.85 sec | |
| Start 42: coreneuron_modtests::datareturn_py_gpu | |
| 114/184 Test #41: coreneuron_modtests::fast_imem_py_gpu .............................. Passed 1.10 sec | |
| Start 43: coreneuron_modtests::test_units_py_gpu | |
| 115/184 Test #36: coreneuron_modtests::fornetcon_py_gpu .............................. Passed 34.36 sec | |
| Start 44: coreneuron_modtests::test_netmove_py_gpu | |
| 116/184 Test #37: coreneuron_modtests::direct_py_gpu ................................. Passed 25.40 sec | |
| Start 45: coreneuron_modtests::test_pointer_py_gpu | |
| 117/184 Test #139: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ........ Passed 35.22 sec | |
| Start 156: testcorenrn_watch::coreneuron_gpu_offline | |
| 118/184 Test #38: coreneuron_modtests::direct_hoc_gpu ................................ Passed 42.15 sec | |
| Start 46: coreneuron_modtests::test_watchrange_py_gpu | |
| 119/184 Test #140: testcorenrn_vecplay::coreneuron_cpu_offline ........................ Passed 42.30 sec | |
| Start 158: testcorenrn_watch::coreneuron_cpu_online | |
| 120/184 Test #154: testcorenrn_watch::coreneuron_gpu_online ........................... Passed 40.37 sec | |
| Start 159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 121/184 Test #43: coreneuron_modtests::test_units_py_gpu ............................. Passed 31.93 sec | |
| Start 47: coreneuron_modtests::test_psolve_py_gpu | |
| 122/184 Test #155: testcorenrn_watch::coreneuron_gpu_online_psolve_alternate .......... Passed 41.31 sec | |
| Start 160: testcorenrn_watch::coreneuron_cpu_offline | |
| 123/184 Test #40: coreneuron_modtests::spikes_file_mode_py_gpu ....................... Passed 36.45 sec | |
| Start 48: coreneuron_modtests::test_ba_py_gpu | |
| 124/184 Test #39: coreneuron_modtests::spikes_py_gpu ................................. Passed 38.01 sec | |
| Start 49: coreneuron_modtests::test_natrans_py_gpu | |
| 125/184 Test #42: coreneuron_modtests::datareturn_py_gpu ............................. Passed 39.55 sec | |
| Start 53: modlunit_unitstest | |
| 126/184 Test #53: modlunit_unitstest ................................................. Passed 0.02 sec | |
| Start 54: modlunit_hh | |
| 127/184 Test #54: modlunit_hh ........................................................ Passed 0.02 sec | |
| Start 55: modlunit_stim | |
| 128/184 Test #55: modlunit_stim ...................................................... Passed 0.01 sec | |
| Start 56: modlunit_pattern | |
| 129/184 Test #56: modlunit_pattern ................................................... Passed 0.01 sec | |
| Start 57: external_nrntest | |
| 130/184 Test #44: coreneuron_modtests::test_netmove_py_gpu ........................... Passed 36.72 sec | |
| Start 84: testcorenrn_bbcore::compare_results | |
| 131/184 Test #84: testcorenrn_bbcore::compare_results ................................ Passed 0.52 sec | |
| Start 94: testcorenrn_conc::compare_results | |
| 132/184 Test #94: testcorenrn_conc::compare_results .................................. Passed 0.17 sec | |
| Start 104: testcorenrn_deriv::compare_results | |
| 133/184 Test #104: testcorenrn_deriv::compare_results ................................. Passed 0.18 sec | |
| Start 114: testcorenrn_gf::compare_results | |
| 134/184 Test #114: testcorenrn_gf::compare_results .................................... Passed 0.06 sec | |
| Start 124: testcorenrn_kin::compare_results | |
| 135/184 Test #124: testcorenrn_kin::compare_results ................................... Passed 0.05 sec | |
| Start 132: testcorenrn_patstim::compare_results | |
| 136/184 Test #132: testcorenrn_patstim::compare_results ............................... Passed 0.05 sec | |
| Start 142: testcorenrn_vecplay::compare_results | |
| 137/184 Test #142: testcorenrn_vecplay::compare_results ............................... Passed 0.06 sec | |
| Start 171: channel_benchmark_hippo::compare_results | |
| 138/184 Test #171: channel_benchmark_hippo::compare_results ........................... Passed 0.05 sec | |
| Start 177: channel_benchmark_sscx::compare_results | |
| 139/184 Test #177: channel_benchmark_sscx::compare_results ............................ Passed 0.05 sec | |
| 140/184 Test #156: testcorenrn_watch::coreneuron_gpu_offline .......................... Passed 34.11 sec | |
| Start 163: testcorenrn_netstimdirect::direct_netstimdirect | |
| 141/184 Test #46: coreneuron_modtests::test_watchrange_py_gpu ........................ Passed 31.89 sec | |
| Start 164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 142/184 Test #47: coreneuron_modtests::test_psolve_py_gpu ............................ Passed 36.46 sec | |
| 143/184 Test #49: coreneuron_modtests::test_natrans_py_gpu ........................... Passed 31.62 sec | |
| Start 33: coreneuron_modtests::spikes_mpi_py_cpu | |
| 144/184 Test #48: coreneuron_modtests::test_ba_py_gpu ................................ Passed 33.23 sec | |
| 145/184 Test #158: testcorenrn_watch::coreneuron_cpu_online ........................... Passed 38.72 sec | |
| Start 34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 146/184 Test #159: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate .......... Passed 39.35 sec | |
| Start 35: coreneuron_modtests::inputpresyn_py_cpu | |
| 147/184 Test #160: testcorenrn_watch::coreneuron_cpu_offline .......................... Passed 37.01 sec | |
| Start 50: coreneuron_modtests::spikes_mpi_py_gpu | |
| Start 162: testcorenrn_watch::compare_results | |
| 148/184 Test #162: testcorenrn_watch::compare_results ................................. Passed 2.62 sec | |
| 149/184 Test #163: testcorenrn_netstimdirect::direct_netstimdirect .................... Passed 29.45 sec | |
| Start 51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu | |
| 150/184 Test #164: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ... Passed 25.10 sec | |
| Start 52: coreneuron_modtests::inputpresyn_py_gpu | |
| Start 165: testcorenrn_netstimdirect::compare_results | |
| 151/184 Test #165: testcorenrn_netstimdirect::compare_results ......................... Passed 0.15 sec | |
| 152/184 Test #33: coreneuron_modtests::spikes_mpi_py_cpu ............................. Passed 38.55 sec | |
| 153/184 Test #35: coreneuron_modtests::inputpresyn_py_cpu ............................ Passed 37.65 sec | |
| Start 147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation | |
| 154/184 Test #34: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ................... Passed 38.42 sec | |
| 155/184 Test #50: coreneuron_modtests::spikes_mpi_py_gpu ............................. Passed 37.78 sec | |
| Start 151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 156/184 Test #151: testcorenrn_vecevent::coreneuron_cpu_offline::preparation .......... Passed 4.57 sec | |
| Start 179: olfactory-bulb-3d::neuron::preparation | |
| 157/184 Test #179: olfactory-bulb-3d::neuron::preparation ............................. Passed 0.05 sec | |
| Start 181: olfactory-bulb-3d::coreneuron_gpu_online::preparation | |
| 158/184 Test #147: testcorenrn_vecevent::coreneuron_gpu_offline::preparation .......... Passed 4.85 sec | |
| Start 183: olfactory-bulb-3d::coreneuron_cpu_online::preparation | |
| 159/184 Test #181: olfactory-bulb-3d::coreneuron_gpu_online::preparation .............. Passed 0.09 sec | |
| Start 58: reduced_dentate::neuron | |
| 160/184 Test #183: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............. Passed 0.08 sec | |
| Start 59: reduced_dentate::coreneuron_cpu | |
| 161/184 Test #51: coreneuron_modtests::spikes_mpi_file_mode_py_gpu ................... Passed 31.16 sec | |
| 162/184 Test #52: coreneuron_modtests::inputpresyn_py_gpu ............................ Passed 27.90 sec | |
| Start 60: reduced_dentate::coreneuron_gpu | |
| 163/184 Test #58: reduced_dentate::neuron ............................................ Passed 14.69 sec | |
| Start 143: testcorenrn_vecevent::neuron | |
| 164/184 Test #143: testcorenrn_vecevent::neuron ....................................... Passed 7.39 sec | |
| Start 144: testcorenrn_vecevent::coreneuron_gpu_online | |
| 165/184 Test #28: coreneuron_modtests::test_pointer_py_cpu ........................... Passed 176.97 sec | |
| 166/184 Test #59: reduced_dentate::coreneuron_cpu .................................... Passed 25.29 sec | |
| Start 68: external_ringtest::coreneuron_cpu_mpi_threads | |
| 167/184 Test #45: coreneuron_modtests::test_pointer_py_gpu ........................... Passed 128.53 sec | |
| 168/184 Test #60: reduced_dentate::coreneuron_gpu .................................... Passed 35.74 sec | |
| Start 145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate | |
| Start 61: reduced_dentate::compare_results | |
| 169/184 Test #61: reduced_dentate::compare_results ................................... Passed 0.10 sec | |
| 170/184 Test #57: external_nrntest ................................................... Passed 118.92 sec | |
| 171/184 Test #68: external_ringtest::coreneuron_cpu_mpi_threads ...................... Passed 22.24 sec | |
| Start 73: external_ringtest::coreneuron_gpu_mpi_threads | |
| 172/184 Test #144: testcorenrn_vecevent::coreneuron_gpu_online ........................ Passed 25.44 sec | |
| Start 146: testcorenrn_vecevent::coreneuron_gpu_offline | |
| 173/184 Test #145: testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate ....... Passed 21.00 sec | |
| Start 148: testcorenrn_vecevent::coreneuron_cpu_online | |
| 174/184 Test #146: testcorenrn_vecevent::coreneuron_gpu_offline ....................... Passed 29.42 sec | |
| Start 149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 175/184 Test #148: testcorenrn_vecevent::coreneuron_cpu_online ........................ Passed 22.14 sec | |
| Start 150: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 176/184 Test #73: external_ringtest::coreneuron_gpu_mpi_threads ...................... Passed 48.21 sec | |
| Start 178: olfactory-bulb-3d::neuron | |
| Start 180: olfactory-bulb-3d::coreneuron_gpu_online | |
| 177/184 Test #150: testcorenrn_vecevent::coreneuron_cpu_offline ....................... Passed 30.52 sec | |
| Start 182: olfactory-bulb-3d::coreneuron_cpu_online | |
| 178/184 Test #149: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ....... Passed 65.95 sec | |
| Start 74: external_ringtest::compare_results | |
| Start 152: testcorenrn_vecevent::compare_results | |
| 179/184 Test #152: testcorenrn_vecevent::compare_results .............................. Passed 0.06 sec | |
| 180/184 Test #74: external_ringtest::compare_results ................................. Passed 0.07 sec | |
| 181/184 Test #178: olfactory-bulb-3d::neuron .......................................... Passed 200.29 sec | |
| 182/184 Test #180: olfactory-bulb-3d::coreneuron_gpu_online ........................... Passed 204.55 sec | |
| 183/184 Test #182: olfactory-bulb-3d::coreneuron_cpu_online ........................... Passed 194.57 sec | |
| Start 184: olfactory-bulb-3d::compare_results | |
| 184/184 Test #184: olfactory-bulb-3d::compare_results ................................. Passed 0.23 sec | |
| 100% tests passed, 0 tests failed out of 184 | |
| Total Test time (real) = 863.42 sec | |
| [32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ module load unstable unit-test-translator[0;m | |
| Autoloading python/3.9.7 | |
| [32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
| [32;1m$ exit ${i_am_a_failure}[0;m | |
| section_end:1655890438:step_script [0Ksection_start:1655890438:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55364 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| Testing/: found 7 matching files and directories [0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=272598 responseStatus[0;m=201 Created token[0;m=W_3qFLr1 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55425 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ctest.xml: found 1 matching files and directories [0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=272598 responseStatus[0;m=201 Created token[0;m=W_3qFLr1 | |
| section_end:1655890440:upload_artifacts_on_success [0Ksection_start:1655890440:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1655890441:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment