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hannahlowens/UnixMaxent.sh

Created March 2, 2016 19:34
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An example of a c shell script to run a batch of Maxent files on a Mac.
Raw
UnixMaxent.sh
#! /bin/csh
#ChilasaAgestor
java -Xms1G -Xmx4G -jar /FOLDER_CONTAINING_MAXENT/maxent.jar nowarnings noprefixes -E "" -E ChilasaAgestor responsecurves outputformat=raw outputdirectory=/Users/Hannah/Desktop/Grants/PRFBProject/Localities/Models/ChilasaAgestor samplesfile=/Users/Hannah/Desktop/Grants/PRFBProject/Localities/Aggregated/USETHESE/ChilasaAgestor.csv environmentallayers=/Users/Hannah/Desktop/Grants/PRFBProject/Localities/Ms/CRUClimLayers/USETHESE/CAgestor randomseed nowarnings notooltips noaskoverwrite autorun randomtestpoints=50 biasfile=/Users/Hannah/Desktop/Scripts/GeneralUtilityQGISLayers/populationDensity/zTransLogPopDensityCRU.asc replicates=10 replicatetype=bootstrap nothreshold nohinge noautofeature nodoclamp maximumiterations=10000 biastype=3 beta_lqp=.95
#ChilasaClytia
java -Xms1G -Xmx4G -jar /FOLDER_CONTAINING_MAXENT/maxent.jar nowarnings noprefixes -E "" -E ChilasaClytia responsecurves outputformat=raw outputdirectory=/Users/Hannah/Desktop/Grants/PRFBProject/Localities/Models/ChilasaClytia samplesfile=/Users/Hannah/Desktop/Grants/PRFBProject/Localities/Aggregated/USETHESE/ChilasaClytia.csv environmentallayers=/Users/Hannah/Desktop/Grants/PRFBProject/Localities/Ms/CRUClimLayers/USETHESE/CClytia randomseed nowarnings notooltips noaskoverwrite autorun randomtestpoints=50 biasfile=/Users/Hannah/Desktop/Scripts/GeneralUtilityQGISLayers/populationDensity/zTransLogPopDensityCRU.asc replicates=10 replicatetype=bootstrap nothreshold nohinge noautofeature nodoclamp maximumiterations=10000 biastype=3 beta_lqp=.95
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