gistfile1.txt

spoust-m:Desktop spoust$ export PERL5LIB=/Users/spoust/Desktop/bioperl-run/
spoust-m:Desktop spoust$ perl printdna.pl
Can't locate Bio/Tools/Run/Alignment/Clustalw.pm in @INC (@INC contains: /Users/spoust/Desktop/bioperl-run/ /Library/Perl/Updates/5.10.0/darwin-thread-multi-2level /Library/Perl/Updates/5.10.0 /System/Library/Perl/5.10.0/darwin-thread-multi-2level /System/Library/Perl/5.10.0 /Library/Perl/5.10.0/darwin-thread-multi-2level /Library/Perl/5.10.0 /Network/Library/Perl/5.10.0/darwin-thread-multi-2level /Network/Library/Perl/5.10.0 /Network/Library/Perl /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level /System/Library/Perl/Extras/5.10.0 .) at printdna.pl line 4.
BEGIN failed--compilation aborted at printdna.pl line 4.
spoust-m:Desktop spoust$ perl -V
Summary of my perl5 (revision 5 version 10 subversion 0) configuration:
  Platform:
    osname=darwin, osvers=10.0, archname=darwin-thread-multi-2level
    uname='darwin neige.apple.com 10.0 darwin kernel version 10.0.0d8: tue may 5 19:29:59 pdt 2009; root:xnu-1437.2~2release_i386 i386 '
    config_args='-ds -e -Dprefix=/usr -Dccflags=-g  -pipe  -Dldflags= -Dman3ext=3pm -Duseithreads -Duseshrplib -Dinc_version_list=none -Dcc=gcc-4.2'
    hint=recommended, useposix=true, d_sigaction=define
    useithreads=define, usemultiplicity=define
    useperlio=define, d_sfio=undef, uselargefiles=define, usesocks=undef
    use64bitint=define, use64bitall=define, uselongdouble=undef
    usemymalloc=n, bincompat5005=undef
  Compiler:
    cc='gcc-4.2', ccflags ='-arch x86_64 -arch i386 -arch ppc -g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include',
    optimize='-Os',
    cppflags='-g -pipe -fno-common -DPERL_DARWIN -fno-strict-aliasing -I/usr/local/include'
    ccversion='', gccversion='4.2.1 (Apple Inc. build 5646)', gccosandvers=''
    intsize=4, longsize=4, ptrsize=4, doublesize=8, byteorder=1234
    d_longlong=define, longlongsize=8, d_longdbl=define, longdblsize=16
    ivtype='long', ivsize=4, nvtype='double', nvsize=8, Off_t='off_t', lseeksize=8
    alignbytes=8, prototype=define
  Linker and Libraries:
    ld='gcc-4.2 -mmacosx-version-min=10.6', ldflags ='-arch x86_64 -arch i386 -arch ppc -L/usr/local/lib'
    libpth=/usr/local/lib /usr/lib
    libs=-ldbm -ldl -lm -lutil -lc
    perllibs=-ldl -lm -lutil -lc
    libc=/usr/lib/libc.dylib, so=dylib, useshrplib=true, libperl=libperl.dylib
    gnulibc_version=''
  Dynamic Linking:
    dlsrc=dl_dlopen.xs, dlext=bundle, d_dlsymun=undef, ccdlflags=' '
    cccdlflags=' ', lddlflags='-arch x86_64 -arch i386 -arch ppc -bundle -undefined dynamic_lookup -L/usr/local/lib'


Characteristics of this binary (from libperl): 
  Compile-time options: MULTIPLICITY PERL_DONT_CREATE_GVSV
                        PERL_IMPLICIT_CONTEXT PERL_MALLOC_WRAP USE_ITHREADS
                        USE_LARGE_FILES USE_PERLIO USE_REENTRANT_API
  Locally applied patches:
	/Library/Perl/Updates/<version> comes before system perl directories
	installprivlib and installarchlib points to the Updates directory
  Built under darwin
  Compiled at Jun 24 2009 00:35:28
  %ENV:
    PERL5LIB="/Users/spoust/Desktop/bioperl-run/"
  @INC:
    /Users/spoust/Desktop/bioperl-run/
    /Library/Perl/Updates/5.10.0/darwin-thread-multi-2level
    /Library/Perl/Updates/5.10.0
    /System/Library/Perl/5.10.0/darwin-thread-multi-2level
    /System/Library/Perl/5.10.0
    /Library/Perl/5.10.0/darwin-thread-multi-2level
    /Library/Perl/5.10.0
    /Network/Library/Perl/5.10.0/darwin-thread-multi-2level
    /Network/Library/Perl/5.10.0
    /Network/Library/Perl
    /System/Library/Perl/Extras/5.10.0/darwin-thread-multi-2level
    /System/Library/Perl/Extras/5.10.0
    .
spoust-m:Desktop spoust$