EasyBuild test report for easybuilders/easybuild-easyconfigs PR #12935

easybuild_test_report_12935_easybuilders_preasybuild-easyconfigs_20210724-UTC-14-07-40.md

Test report for easybuilders/easybuild-easyconfigs#12935

Test result

Build succeeded for 3 out of 3 (3 easyconfigs in total)

Overview of tested easyconfigs (in order)

• SUCCESS hypothesis-6.13.1-GCCcore-10.3.0.eb
• SUCCESS pybind11-2.6.2-GCCcore-10.3.0.eb
• SUCCESS SciPy-bundle-2021.05-foss-2021.04.eb

Time info

• start: Mon, 24 May 2021 12:38:37 +0000 (UTC)
• end: Mon, 24 May 2021 14:07:40 +0000 (UTC)

EasyBuild info

• easybuild-framework version: 4.3.5.dev0
• easybuild-easyblocks version: 4.3.5.dev0
• command line:

eb --from-pr 12935 --upload-test-report --github-user=boegel -dfr

• full configuration (includes defaults):

--accept-eula-for='.*'
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/vsc40023/easybuild_build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--configfiles='/user/gent/400/vsc40023/.config/easybuild/config.cfg'
--container-type='singularity'
--containerpath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='error'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--force
--from-pr='12935'
--generate-devel-module
--github-user='boegel'
--hooks='/data/gent/400/vsc40023/eb_hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib'
--job-backend='Slurm'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/kyukon/home/gent/400/vsc40023'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='error'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--optarch='{\'Intel\': \'march=core-avx2\'}'
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib'
--repository='FileRepository'
--repositorypath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib/ebfiles_repo'
--robot-paths=''
--robot='/data/gent/400/vsc40023/easybuild_easy_installed/lib/python3.6/site-packages/easybuild_easyconfigs-4.3.5.dev0-py2.7.egg/easybuild/easyconfigs'
--sourcepath='/data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

• core count: 24
• cpu arch: x86_64
• cpu arch name: zen2
• cpu model: AMD EPYC 7552 48-Core Processor
• cpu speed: 2200.0
• cpu vendor: AMD
• gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.3.1 20191121 (Red Hat 8.3.1-5) (GCC) ;
• glibc version: 2.28
• hostname: node3532.doduo.os
• os name: RHEL
• os type: Linux
• os version: 8.2
• platform name: x86_64-unknown-linux
• python version: 3.6.8 (default, Dec 5 2019, 15:45:45) ; [GCC 8.3.1 20191121 (Red Hat 8.3.1-5)]
• system gcc path: /usr/bin/gcc
• system python path: /usr/bin/python
• total memory: 257599

List of loaded modules

• cluster/doduo

Environment

BASH_FUNC_ml%% = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module%% = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CARGO_HOME = /scratch/gent/400/vsc40023/.cargo
CCACHE_COMPILERCHECK = echo %compiler%; %compiler% -v; %compiler% -dumpmachine
CCACHE_COMPRESS = true
CCACHE_MAXFILES = 1000000
CCACHE_MAXSIZE = 0
CCACHE_NLEVELS = 4
DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/2540023/bus
EASYBUILD_ACCEPT_EULA_FOR = .*
EASYBUILD_BUILDPATH = /tmp/vsc40023/easybuild_build
EASYBUILD_DEBUG = 1
EASYBUILD_DETECT_LOADED_MODULES = error
EASYBUILD_GITHUB_USER = boegel
EASYBUILD_HOOKS = /data/gent/400/vsc40023/eb_hooks.py
EASYBUILD_JOB_BACKEND = Slurm
EASYBUILD_LOCAL_VAR_NAMING_CHECK = error
EASYBUILD_OPTARCH = Intel:march=core-avx2
EASYBUILD_PREFIX = /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib
EASYBUILD_SOURCEPATH = /data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source
EASYBUILD_TRACE = 1
EB_PYTHON = python3
EB_SCRIPT_PATH = /data/gent/400/vsc40023/easybuild_easy_installed/bin/eb
EB_VERBOSE = 1
ENVIRONMENT = BATCH
F90CACHE_NLEVELS = 4
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /user/gent/400/vsc40023
HOSTNAME = node3532.doduo.os
HPCUGENT_FAMILY_CLUSTER = cluster
HPCUGENT_FAMILY_CLUSTER_VERSION = doduo
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LIBGL_DEBUG = verbose
LMOD_ANCIENT_TIME = 604800
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_FAMILY_CLUSTER = cluster
LMOD_FAMILY_CLUSTER_VERSION = doduo
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SHORT_TIME = 86400
LMOD_SYSTEM_NAME = RHEL8-zen2
LMOD_VERSION = 8.4.12
LOADEDMODULES = cluster/doduo
LOGNAME = vsc40023
MAIL = /var/spool/mail/vsc40023
MANPATH = :
MODULEPATH = /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib/modules/all:/apps/gent/RHEL8/zen2-ib/modules/all:/etc/modulefiles/vsc
MODULESHOME = /usr/share/lmod/lmod
PATH = /data/gent/400/vsc40023/easybuild_easy_installed/bin:/user/gent/400/vsc40023/bin:/usr/libexec/jobcli:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin
PBS_ARRAYID = 2935
PBS_DEFAULT = SLURM_NOT_TORQUE_PBS
PBS_JOBDIR = /kyukon/home/gent/400/vsc40023
PBS_JOBID = 50200643[2935]
PBS_JOBNAME = pr12935_SciPy-bundle_foss2021a
PBS_NODEFILE = /tmp/N1EdwjTysA
PBS_NODENUM = 0
PBS_NP = 24
PBS_NUM_NODES = 1
PBS_NUM_PPN = 24
PBS_O_HOME = /user/gent/400/vsc40023
PBS_O_LANG = en_US.UTF-8
PBS_O_LOGNAME = vsc40023
PBS_O_MAIL = /var/spool/mail/vsc40023
PBS_O_PATH = /data/gent/400/vsc40023/easybuild_easy_installed/bin:/user/gent/400/vsc40023/bin:/usr/libexec/jobcli:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin
PBS_O_SHELL = /bin/bash
PBS_O_WORKDIR = /kyukon/home/gent/400/vsc40023
PBS_TASKNUM = 1
PWD = /kyukon/home/gent/400/vsc40023
PYTHONOPTIMIZE = 1
PYTHONPATH = /user/gent/400/vsc40023/py3/lib/python3.6/site-packages:/user/gent/400/vsc40023/.local/python-dateutil/lib/python3.6/site-packages/:/user/gent/400/vsc40023/.local/keyring/lib/python2.7/site-packages:/data/gent/400/vsc40023/easybuild_easy_installed/lib/python3.6/site-packages:
PYTHON_EGG_CACHE = /user/gent/400/vsc40023/eb_scratch/python-eggs
SHELL = /bin/bash
SHLVL = 3
SLURMD_NODENAME = node3532.doduo.os
SLURM_ARRAY_JOB_ID = 50200643
SLURM_ARRAY_TASK_COUNT = 1
SLURM_ARRAY_TASK_ID = 2935
SLURM_ARRAY_TASK_MAX = 2935
SLURM_ARRAY_TASK_MIN = 2935
SLURM_ARRAY_TASK_STEP = 1
SLURM_CLUSTERS = doduo
SLURM_CLUSTER_NAME = doduo
SLURM_CONF = /etc/slurm/slurm.conf
SLURM_CPUS_ON_NODE = 24
SLURM_EXPORT_ENV = NONE
SLURM_GET_USER_ENV = 1
SLURM_GTIDS = 0
SLURM_JOBID = 50200643
SLURM_JOB_ACCOUNT = gvo00002
SLURM_JOB_CPUS_PER_NODE = 24
SLURM_JOB_GID = 2540023
SLURM_JOB_ID = 50200643
SLURM_JOB_NAME = pr12935_SciPy-bundle_foss2021a
SLURM_JOB_NODELIST = node3532.doduo.os
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = doduo
SLURM_JOB_QOS = normal
SLURM_JOB_UID = 2540023
SLURM_JOB_USER = vsc40023
SLURM_LOCALID = 0
SLURM_MEM_PER_CPU = 2600
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = node3532.doduo.os
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 24
SLURM_NTASKS = 24
SLURM_NTASKS_PER_NODE = 24
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_SUBMIT_DIR = /kyukon/home/gent/400/vsc40023
SLURM_SUBMIT_HOST = gligar04.gastly.os
SLURM_TASKS_PER_NODE = 24
SLURM_TASK_PID = 3710474
SLURM_TOPOLOGY_ADDR = node3532.doduo.os
SLURM_TOPOLOGY_ADDR_PATTERN = node
SLURM_WORKING_CLUSTER = doduo:master35.doduo.os:6817:9216:109
S_COLORS = auto
TEST_BASH_SOURCE = /user/gent/400/vsc40023/.bashrc /user/gent/400/vsc40023/.bash_profile
TMPDIR = /tmp
USER = vsc40023
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = zen2
VSC_ARCH_SUFFIX = -ib
VSC_DATA = /data/gent/400/vsc40023
VSC_DATA_VO = /data/gent/vo/000/gvo00002
VSC_DATA_VO_USER = /data/gent/vo/000/gvo00002/vsc40023
VSC_DEFAULT_CLUSTER_MODULE = doduo
VSC_HOME = /user/gent/400/vsc40023
VSC_INSTITUTE = gent
VSC_INSTITUTE_CLUSTER = doduo
VSC_INSTITUTE_LOCAL = gent
VSC_OS_LOCAL = RHEL8
VSC_SCRATCH = /scratch/gent/400/vsc40023
VSC_SCRATCH_ARCANINE = /arcanine/scratch/gent/400/vsc40023
VSC_SCRATCH_ARCANINE_VO = /arcanine/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_ARCANINE_VO_USER = /arcanine/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_CLUSTER = /local
VSC_SCRATCH_KYUKON = /kyukon/scratch/gent/400/vsc40023
VSC_SCRATCH_KYUKON_VO = /kyukon/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_KYUKON_VO_USER = /kyukon/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_PHANPY = /phanpy/scratch/gent/400/vsc40023
VSC_SCRATCH_PHANPY_VO = /phanpy/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_PHANPY_VO_USER = /phanpy/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_SITE = /scratch/gent/400/vsc40023
VSC_SCRATCH_VO = /scratch/gent/vo/000/gvo00002
VSC_SCRATCH_VO_USER = /scratch/gent/vo/000/gvo00002/vsc40023
VSC_VO = gvo00002
XDG_RUNTIME_DIR = /run/user/2540023
XDG_SESSION_ID = c36476
_ = /usr/bin/python3
_LMFILES_ = /etc/modulefiles/vsc/cluster/doduo.lua
_ModuleTable001_ = 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
_ModuleTable002_ = dGNoL1JIRUw4L3plbjItaWIvbW9kdWxlcy9hbGwiLCIvYXBwcy9nZW50L1JIRUw4L3plbjItaWIvbW9kdWxlcy9hbGwiLCIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfQ==
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_LOADEDMODULES = cluster/doduo:1
__LMOD_REF_COUNT_MODULEPATH = /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/zen2-ib/modules/all:1;/apps/gent/RHEL8/zen2-ib/modules/all:1;/etc/modulefiles/vsc:1
__LMOD_REF_COUNT_PATH = /usr/libexec/jobcli:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1
__LMOD_REF_COUNT__LMFILES_ = /etc/modulefiles/vsc/cluster/doduo.lua:1