Skip to content

Instantly share code, notes, and snippets.

@dbolser

dbolser/gist:890827

Created March 28, 2011 16:53
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save dbolser/890827 to your computer and use it in GitHub Desktop.
Save dbolser/890827 to your computer and use it in GitHub Desktop.
Download ZIP
Raw
gistfile1.txt
[dbolser@cricket Bio-BigFile-1.05]$ ./perl Build.PL
-bash: ./perl: No such file or directory
[dbolser@cricket Bio-BigFile-1.05]$ perl Build.PL
Created MYMETA.yml and MYMETA.json
Creating new 'Build' script for 'Bio-BigFile' version '1.05'
[dbolser@cricket Bio-BigFile-1.05]$ ./Build
Building Bio-BigFile
gcc -I/homes/dbolser/build/src/kent/src/inc -I/usr/lib/perl5/5.8.8/i386-linux-thread-multi/CORE -DXS_VERSION="1.05" -DVERSION="1.05" -fPIC -Wformat=0 -DMACHTYPE_i686 -c -D_REENTRANT -D_GNU_SOURCE -fno-strict-aliasing -pipe -Wdeclaration-after-statement -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -I/usr/include/gdbm -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -o lib/Bio/DB/BigFile.o lib/Bio/DB/BigFile.c
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigWigIntervalQuery’:
lib/Bio/DB/BigFile.xs:172: warning: operation on ‘list’ may be undefined
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigWigSummaryArray’:
lib/Bio/DB/BigFile.xs:193: warning: operation on ‘values’ may be undefined
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigBedSummaryArray’:
lib/Bio/DB/BigFile.xs:252: warning: operation on ‘values’ may be undefined
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigWigSummary’:
lib/Bio/DB/BigFile.xs:296: warning: operation on ‘summary’ may be undefined
lib/Bio/DB/BigFile.xs:302: warning: operation on ‘summaryList’ may be undefined
lib/Bio/DB/BigFile.xs:290: warning: unused variable ‘i’
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigBedSummary’:
lib/Bio/DB/BigFile.xs:326: warning: operation on ‘summary’ may be undefined
lib/Bio/DB/BigFile.xs:332: warning: operation on ‘summaryList’ may be undefined
lib/Bio/DB/BigFile.xs:320: warning: unused variable ‘i’
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigWigSummaryArrayExtended’:
lib/Bio/DB/BigFile.xs:358: warning: operation on ‘summary’ may be undefined
lib/Bio/DB/BigFile.xs:354: warning: unused variable ‘summaryList’
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigBedSummaryArrayExtended’:
lib/Bio/DB/BigFile.xs:395: warning: operation on ‘summary’ may be undefined
lib/Bio/DB/BigFile.xs:391: warning: unused variable ‘summaryList’
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_chromList’:
lib/Bio/DB/BigFile.xs:424: warning: operation on ‘RETVAL’ may be undefined
lib/Bio/DB/BigFile.xs: In function ‘XS_Bio__DB__bbiFile_bigBedIntervalQuery’:
lib/Bio/DB/BigFile.xs:450: warning: operation on ‘list’ may be undefined
ExtUtils::Mkbootstrap::Mkbootstrap('blib/arch/auto/Bio/DB/BigFile/BigFile.bs')
gcc -shared -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -L/usr/local/lib -o blib/arch/auto/Bio/DB/BigFile/BigFile.so lib/Bio/DB/BigFile.o /homes/dbolser/build/src/kent/src/lib/i686/jkweb.a -lz -lssl -lcrypto
[dbolser@cricket Bio-BigFile-1.05]$ ./Build test
t/01.bigwig.t ....... ok
t/02.bigbed.t ....... ok
t/03.bigwig_high.t .. ok
t/04.bigbed_high.t .. ok
t/05.bigwig_set.t ... ok
All tests successful.
Files=5, Tests=135, 1 wallclock secs ( 0.05 usr 0.01 sys + 1.29 cusr 0.15 csys = 1.50 CPU)
Result: PASS
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment