Skip to content

Instantly share code, notes, and snippets.

@sassy-crick

sassy-crick/easybuild_test_report_12347_easybuilders_preasybuild-easyconfigs_20214828-UTC-16-48-03.md

Created April 28, 2021 16:48
Show Gist options
  • Star 0 You must be signed in to star a gist
  • Fork 0 You must be signed in to fork a gist
  • Save sassy-crick/8a1a099eb4d0fce579bfdde2ca63a379 to your computer and use it in GitHub Desktop.
Save sassy-crick/8a1a099eb4d0fce579bfdde2ca63a379 to your computer and use it in GitHub Desktop.
Download ZIP
EasyBuild test report for easybuilders/easybuild-easyconfigs PR #12347
Raw
easybuild_test_report_12347_easybuilders_preasybuild-easyconfigs_20214828-UTC-16-48-03.md

Test report for easybuilders/easybuild-easyconfigs#12347

Test result

Build succeeded for 0 out of 1 (1 easyconfigs in total)

Overview of tested easyconfigs (in order)

Time info

  • start: Wed, 28 Apr 2021 16:47:52 +0000 (UTC)
  • end: Wed, 28 Apr 2021 16:48:02 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.3.4
  • easybuild-easyblocks version: 4.3.4
  • command line:
eb --modules-tool=EnvironmentModulesC --module-syntax=Tcl --allow-modules-tool-mismatch --from-pr 12347 --rebuild --upload-test-report --github-user sassy-crick
  • full configuration (includes defaults):
--accept-eula-for=''
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--allow-modules-tool-mismatch
--buildpath='/dev/shm/build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/dev/shm/containers'
--cuda-compute-capabilities='8.0'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--from-pr='12347'
--generate-devel-module
--github-user='sassy-crick'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/scratch/groups/celgene/software'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/mnt/lustre/users/k1930241/build/easybuild/new'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Tcl'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='EnvironmentModulesC'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/dev/shm/packages'
--parallel='2'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/dev/shm/'
--rebuild
--repository='FileRepository'
--repositorypath='/scratch/groups/celgene/software/ebfiles_repo'
--robot-paths=''
--sourcepath='/scratch/groups/celgene/software/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--tmpdir='/tmp/easybuild'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 8
  • cpu arch: x86_64
  • cpu arch name: UNKNOWN
  • cpu model: AMD EPYC 7552 48-Core Processor
  • cpu speed: 2200.0
  • cpu vendor: AMD
  • gcc version: Es werden eingebaute Spezifikationen verwendet.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Ziel: x86_64-redhat-linux; Konfiguriert mit: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread-Modell: posix; gcc-Version 4.8.5 20150623 (Red Hat 4.8.5-39) (GCC) ;
  • glibc version: 2.17
  • hostname: gpu05.pri.rosalind2.alces.network
  • os name: centos linux
  • os type: Linux
  • os version: 7.6.1810
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Apr 2 2020, 13:34:55) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-39)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 1031782

List of loaded modules

  • services/s3cmd
  • null
  • use.own
  • utilities/use.dev
  • EasyBuild/4.3.4

Environment

BASH_FUNC__cw_root() = () {  echo "$cw_ROOT"
}
BASH_FUNC__flight() = () {  ( set -e;
 source "$FL_ROOT"/etc/runtime.sh;
 cd "$FL_ROOT";
 bin/flight "$@" )
}
BASH_FUNC_al() = () {  flight "$@"
}
BASH_FUNC_alces() = () {  flight "$@"
}
BASH_FUNC_fl() = () {  flight "$@"
}
BASH_FUNC_flight() = () {  if [[ $1 == 'mo'* && 'module' == "$1"* ]]; then
 shift 1;
 if [[ ! $(ps -o 'command=' -p "$$" 2>/dev/null) =~ ^- ]]; then
 if [[ ! ":$cw_FLAGS:" =~ :verbose-modules: ]]; then
 export cw_MODULES_VERBOSE=0;
 fi;
 fi;
 case $1 in 
 fl* | al* | h* | -h | --help)
 if [[ ":$cw_FLAGS:" =~ :nopager: ]]; then
 _flight 'module' "$@" 0>&1 2>&1;
 else
 _flight 'module' "$@" 0>&1 2>&1 | less -FRX;
 fi
 ;;
 *)
 if [[ ":$cw_FLAGS:" =~ :nopager: ]]; then
 eval $(_flight 'module' "$@") 2>&1;
 else
 if [ -n "$POSIXLY_CORRECT" ]; then
 eval $(_flight 'module' "$@") 2>&1;
 else
 if [ "$1" == "load" -o "$1" == "add" ]; then
 eval $(_flight 'module' "$@") 2>&1;
 else
 eval $(source $FL_ROOT/etc/runtime.sh && $FL_ROOT/bin/flight 'module' "$@" 2> >(less -FRX >&2)) 2>&1;
 fi;
 fi;
 fi
 ;;
 esac;
 else
 _flight "$@";
 fi
}
BASH_FUNC_module() = () {  alces module "$@"
}
CMAKE_PREFIX_PATH = /scratch/groups/celgene/software/software/EasyBuild/4.3.4
CUDA_VISIBLE_DEVICES = 0
DISPLAY = localhost:10.0
EASYBUILD_CUDA_COMPUTE_CAPABILITIES = 8.0
EASYBUILD_INSTALLPATH = /scratch/groups/celgene/software
EASYBUILD_MODULES_TOOL = EnvironmentModulesC
EASYBUILD_PARALLEL = 2
EASYBUILD_PREFIX = /dev/shm/
EASYBUILD_REPOSITORYPATH = /scratch/groups/celgene/software/ebfiles_repo
EASYBUILD_SOURCEPATH = /scratch/groups/celgene/software/sources
EASYBUILD_TMPDIR = /tmp/easybuild
EBDEVELEASYBUILD = /scratch/groups/celgene/software/software/EasyBuild/4.3.4/easybuild/EasyBuild-4.3.4-easybuild-devel
EBROOTEASYBUILD = /scratch/groups/celgene/software/software/EasyBuild/4.3.4
EBVERSIONEASYBUILD = 4.3.4
EB_INSTALLPYTHON = /usr/bin/python3
EB_SCRIPT_PATH = /scratch/groups/celgene/software/software/EasyBuild/4.3.4/bin/eb
FANCYLOGGER_IGNORE_MPI4PY = 1
FL_ROOT = /opt/flight-direct
FL_SOURCED = true
GPU_DEVICE_ORDINAL = 0
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /users/k1930241
HOSTNAME = gpu05.pri.rosalind2.alces.network
LANG = de_DE.UTF-8
LD_LIBRARY_PATH = /opt/flight-direct/embedded/lib:/opt/flight-direct/embedded/lib:
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LOADEDMODULES = services/s3cmd:null:use.own:utilities/use.dev:EasyBuild/4.3.4
LOGNAME = k1930241
LS_COLORS = rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
MAIL = /var/spool/mail/k1930241
MANPATH = /opt/puppetlabs/puppet/share/man
MODULEPATH = /opt/apps/etc/modules/dev:/scratch/groups/celgene/software/modules/all:/opt/gridware/local/el7/etc/modules:/opt/flight-direct/etc/modules:/opt/apps/alces/etc/modules:/opt/apps/etc/modules/prod:/users/k1930241/privatemodules
PATH = /opt/flight-direct/opt/modules/bin:/scratch/groups/celgene/software/software/EasyBuild/4.3.4/bin:/opt/flight-direct/opt/s3cmd:/users/k1930241/perl5/bin:/users/k1930241/perl5/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin:/users/k1930241/.local/bin:/users/k1930241/bin
PERL5LIB = /users/k1930241/perl5/lib/perl5:/users/k1930241/perl5/lib/perl5:
PERL_LOCAL_LIB_ROOT = :/users/k1930241/perl5:/users/k1930241/perl5
PERL_MB_OPT = --install_base /users/k1930241/perl5
PERL_MM_OPT = INSTALL_BASE=/users/k1930241/perl5
PWD = /users/k1930241/build/easybuild/new
PYTHONOPTIMIZE = 1
PYTHONPATH = /scratch/groups/celgene/software/software/EasyBuild/4.3.4/lib/python3.6/site-packages
S3CMDBIN = /opt/flight-direct/opt/s3cmd
S3CMDDIR = /opt/flight-direct/opt/s3cmd
SHELL = /bin/bash
SHLVL = 3
SLURMD_NODENAME = gpu05
SLURM_CLUSTER_NAME = rosalind2.alces.network
SLURM_CPUS_ON_NODE = 8
SLURM_DISTRIBUTION = block
SLURM_GTIDS = 0,1,2,3,4,5,6,7
SLURM_JOBID = 12906465
SLURM_JOB_ACCOUNT = default
SLURM_JOB_CPUS_PER_NODE = 8
SLURM_JOB_GID = 574000001
SLURM_JOB_ID = 12906465
SLURM_JOB_NAME = bash
SLURM_JOB_NODELIST = gpu05
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = celgene
SLURM_JOB_QOS = normal
SLURM_JOB_UID = 103801337
SLURM_JOB_USER = k1930241
SLURM_LAUNCH_NODE_IPADDR = 10.10.12.5
SLURM_LOCALID = 0
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = gpu05
SLURM_NPROCS = 8
SLURM_NTASKS = 8
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_PTY_PORT = 38567
SLURM_PTY_WIN_COL = 91
SLURM_PTY_WIN_ROW = 26
SLURM_SRUN_COMM_HOST = 10.10.12.5
SLURM_SRUN_COMM_PORT = 38807
SLURM_STEPID = 0
SLURM_STEP_GPUS = 0
SLURM_STEP_ID = 0
SLURM_STEP_LAUNCHER_PORT = 38807
SLURM_STEP_NODELIST = gpu05
SLURM_STEP_NUM_NODES = 1
SLURM_STEP_NUM_TASKS = 8
SLURM_STEP_TASKS_PER_NODE = 8
SLURM_SUBMIT_DIR = /users/k1930241
SLURM_SUBMIT_HOST = gpu05.pri.rosalind2.alces.network
SLURM_TASKS_PER_NODE = 8
SLURM_TASK_PID = 146939
SLURM_TMPDIR = /tmp/slurm-tmp.12906465
SLURM_TOPOLOGY_ADDR = fakecore.ibcore1.Ethernet.gpu05
SLURM_TOPOLOGY_ADDR_PATTERN = switch.switch.switch.node
SLURM_UMASK = 0022
SLURM_WORKING_CLUSTER = rosalind2.alces.network:infra02:6817:8704:101
SRUN_DEBUG = 3
SSH_CLIENT = 10.10.0.23 47584 22
SSH_CONNECTION = 10.10.0.23 47584 10.10.12.5 22
SSH_TTY = /dev/pts/0
TERM = xterm-256color
TMPDIR = /tmp/slurm-tmp.12906465
USER = k1930241
XDG_RUNTIME_DIR = /run/user/103801337
XDG_SESSION_ID = 84682
_ = /usr/bin/python3
_LMFILES_ = /opt/flight-direct/etc/modules/services/s3cmd:/opt/gridware/local/el7/etc/modules/null:/opt/flight-direct/etc/modules/use.own:/opt/apps/etc/modules/prod/utilities/use.dev:/scratch/groups/celgene/software/modules/all/EasyBuild/4.3.4
cw_DIST = el7
cw_MODULES_VERBOSE = 0
cw_ROOT = /opt/flight-direct
cw_SHELL = bash
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment