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August 8, 2014 11:33
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(partial) EasyBuild log for failed build of /tmp/easybuild-c9eLvf/files_pr961/kmer-r1971-goolf-1.4.10.eb (PR #961)
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| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqStream.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqCache.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/merStream.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStream.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqCache.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqFactory.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/sffFile.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStore.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaStdin.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastqFile.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaFile.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/kmer.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/reversecomplement.c.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/halign.c.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-colorspace.c.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-acgtspace.c.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet.c.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libmeryl/libmeryl.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/mask.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/percentCovered.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/driver-posDB.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/driver-existDB.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/positionDB.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/positionDB-sort.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/positionDB-mismatch.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/positionDB-file.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/positionDB-dump.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/positionDB-access.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/existDB.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/existDB-state.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/existDB-create-from-sequence.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/existDB-create-from-meryl.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/existDB-create-from-fasta.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishWriter.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishReader.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishFile.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishBuilder.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishList.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-updatescores.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-read.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-polishtostring.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-exons.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-deleteexon.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-copy.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-compare.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/util.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/table.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/splice.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_score.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_acceptor.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_donor.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1_s.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-4.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-3.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-2.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-1.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1a.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/poly.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/pluri_align.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/mspManager.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/greedy.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/glimmerSplice.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/extend.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/exon_cores.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/align.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/Xtend1.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4parameters.C.d | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C.d | |
| making tapper/tappererrorcorrect.C.d | |
| making tapper/tappersort.C.d | |
| making tapper/tappermerge.C.d | |
| making tapper/tapperconvert.C.d | |
| making tapper/tapper.C.d | |
| making tapper/tagger.C.d | |
| making snapper/hitMatrix-sort.C.d | |
| making snapper/hitMatrix.C.d | |
| making snapper/thr-polish-dp.C.d | |
| making snapper/thr-polish.C.d | |
| making snapper/thr-filter.C.d | |
| making snapper/thr-search.C.d | |
| making snapper/configuration.C.d | |
| making snapper/snapper2.C.d | |
| making sim4db/sim4th.C.d | |
| making sim4dbutils/s4p_overlap.C.d | |
| making sim4dbutils/reportAlignmentDifferences.C.d | |
| making sim4dbutils/removeRedundant.C.d | |
| making sim4dbutils/realignPolishes.C.d | |
| making sim4dbutils/vennPolishes.C.d | |
| making sim4dbutils/uniqPolishes.C.d | |
| making sim4dbutils/summarizePolishes.C.d | |
| making sim4dbutils/sortPolishes.C.d | |
| making sim4dbutils/removeDuplicate.C.d | |
| making sim4dbutils/plotCoverageVsIdentity.C.d | |
| making sim4dbutils/pickUniquePolish.C.d | |
| making sim4dbutils/pickBestPair.C.d | |
| making sim4dbutils/pickBestPolish.C.d | |
| making sim4dbutils/parseSNP.C.d | |
| making sim4dbutils/mergePolishes.C.d | |
| making sim4dbutils/mappedCoverage.C.d | |
| making sim4dbutils/headPolishes.C.d | |
| making sim4dbutils/filterPolishes.C.d | |
| making sim4dbutils/depthOfPolishes.C.d | |
| making sim4dbutils/detectChimera.C.d | |
| making sim4dbutils/convertPolishes.C.d | |
| making sim4dbutils/convertToExtent.C.d | |
| making sim4dbutils/convertToAtac.C.d | |
| making sim4dbutils/comparePolishes.C.d | |
| making sim4dbutils/fixPolishesIID.C.d | |
| making sim4dbutils/cleanPolishes.C.d | |
| making seagen/hitMatrix.C.d | |
| making seagen/hitReader.C.d | |
| making seagen/filtertest.C.d | |
| making seagen/sortHits.C.d | |
| making seagen/filterNULL.C.d | |
| making seagen/filterMRNA.C.d | |
| making seagen/filterEST-complicated.C.d | |
| making seagen/filterEST.C.d | |
| making seagen/hitConverter.C.d | |
| making seagen/aHit.C.d | |
| making seagen/hitMatrix-sort.C.d | |
| making seagen/thr-output.C.d | |
| making seagen/thr-search.C.d | |
| making seagen/thr-loader.C.d | |
| making seagen/thr-deadlock.C.d | |
| making seagen/encodedQuery.C.d | |
| making seagen/configuration.C.d | |
| making seagen/searchGENOME.C.d | |
| making meryl/simple.C.d | |
| making meryl/compare-counts.C.d | |
| making meryl/maskMers.C.d | |
| making meryl/mapMers-depth.C.d | |
| making meryl/mapMers.C.d | |
| making meryl/asmMerQC.C.d | |
| making meryl/mervin.C.d | |
| making meryl/meryl.C.d | |
| making meryl/unaryOp.C.d | |
| making meryl/merge.C.d | |
| making meryl/estimate.C.d | |
| making meryl/dump.C.d | |
| making meryl/build-threads.C.d | |
| making meryl/build.C.d | |
| making meryl/binaryOp.C.d | |
| making meryl/args.C.d | |
| making leaff/stats.C.d | |
| making leaff/simseq.C.d | |
| making leaff/partition.C.d | |
| making leaff/gc.C.d | |
| making leaff/dups.C.d | |
| making leaff/blocks.C.d | |
| making leaff/leaff.C.d | |
| making seatac/hitMatrix-sort.C.d | |
| making seatac/thr-deadlock.C.d | |
| making seatac/thr-loader.C.d | |
| making seatac/thr-search.C.d | |
| making seatac/hitMatrix.C.d | |
| making seatac/encodedQuery.C.d | |
| making seatac/configuration.C.d | |
| making seatac/seatac.C.d | |
| making atac-driver/chimera/happy-clones-span-clumps.C.d | |
| making atac-driver/chainer/halign/halignmodule.C.d | |
| making atac-driver/chainer/halign/halign.C.d | |
| making atac-driver/chainer/localalign/localAlignerInterfacemodule.C.d | |
| making atac-driver/chainer/localalign/GF_ALN_pieceOlap.C.d | |
| making atac-driver/chainer/localalign/GF_ALN_loverlapper.C.d | |
| making atac-driver/chainer/localalign/GF_ALN_overlap.C.d | |
| making atac-driver/chainer/localalign/GF_ALN_local.C.d | |
| making atac-driver/chainer/localalign/GF_ALN_dpaligner.C.d | |
| making atac-driver/clumpMaker/clumpMaker.C.d | |
| making atac-driver/uniqueFilter/uniqueFilter.C.d | |
| making atac-driver/statsGenerator/statsGenerator.C.d | |
| making atac-driver/mismatchCounter/mismatchCounter.C.d | |
| making atac-driver/matchExtender/matchExtender-func.C.d | |
| making atac-driver/matchExtender/matchExtender-dump.C.d | |
| making atac-driver/matchExtender/matchExtender.C.d | |
| making atac-driver/lengthFilter/lengthFilter.C.d | |
| making atac-driver/gapShifter/projectFeatures.C.d | |
| making atac-driver/gapShifter/cleanAtac.C.d | |
| making atac-driver/gapShifter/testAtac.C.d | |
| making atac-driver/gapShifter/correctGaps.C.d | |
| making atac-driver/gapShifter/coalesceMatches.C.d | |
| making atac-driver/gapShifter/extractUnmapped.C.d | |
| making atac-driver/gapShifter/extractSequence.C.d | |
| making atac-driver/gapShifter/gapShifter.C.d | |
| making atac-driver/alignOverlap/overlap-find.C.d | |
| making atac-driver/alignOverlap/overlap-printAnno.C.d | |
| making atac-driver/alignOverlap/overlap-sort.C.d | |
| making atac-driver/alignOverlap/overlap.C.d | |
| making atac-driver/libatac/atacMatchOrder.C.d | |
| making atac-driver/libatac/atacMatchList.C.d | |
| making atac-driver/libatac/atacMatch.C.d | |
| making atac-driver/libatac/atacFileStreamMerge.C.d | |
| making atac-driver/libatac/atacFile.C.d | |
| making atac-driver/libatac/atacFeatureList.C.d | |
| making atac-driver/libatac/atacFeature.C.d | |
| making ESTmapper/terminate.C.d | |
| making ESTmapper/mergeCounts.C.d | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/mergeCounts.o -c ESTmapper/mergeCounts.C | |
| g++ -L/usr/local/lib -o ESTmapper/mergeCounts ESTmapper/mergeCounts.o -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libkmer/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o ESTmapper/terminate.o -c ESTmapper/terminate.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C: In member function ‘void sim4command::finalize()’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C:147:6: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wparentheses] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getESTheader()’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C:184:22: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C: In member function ‘char* sim4command::getGENheader()’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.C:222:15: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4parameters.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4parameters.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.C | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.C: In member function ‘void Sim4::IDISPLAY(sim4polishBuilder&, char*, char*, char*, char*, int, int, int*, int, int, int, Exon*)’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.C:682:71: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.C:682:71: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.C:695:84: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.C:695:84: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/Xtend1.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/Xtend1.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/align.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/align.C | |
| In file included from /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/align.C:1:0: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4.H: In member function ‘void Sim4::align_path(int, int, int, int, int, Sim4::edit_script**, Sim4::edit_script**)’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4.H:264:5: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false [-Wstrict-overflow] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4.H: In member function ‘void Sim4::path(int, int, char, int, int, char, int, Sim4::edit_script**, Sim4::edit_script**)’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4.H:264:5: warning: assuming signed overflow does not occur when assuming that (X + c) < X is always false [-Wstrict-overflow] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/exon_cores.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/exon_cores.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/extend.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/extend.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/glimmerSplice.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/glimmerSplice.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/greedy.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/greedy.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/mspManager.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/mspManager.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/pluri_align.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/pluri_align.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/poly.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/poly.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1a.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1a.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-1.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-1.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-2.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-2.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-3.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-3.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-4.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-4.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1_s.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1_s.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.C | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.C: In function ‘int readtree(Sim4*, char*, tree*, int)’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.C:452:6: warning: variable ‘len’ set but not used [-Wunused-but-set-variable] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.C: In function ‘int Is_Cod_NonCod(const int*, double*, int)’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.C:742:6: warning: ‘scores’ may be used uninitialized in this function [-Wmaybe-uninitialized] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_donor.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_donor.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_acceptor.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_acceptor.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_score.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_score.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/splice.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/splice.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/table.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/table.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/util.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/util.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-compare.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-compare.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-copy.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-copy.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-deleteexon.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-deleteexon.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-exons.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-exons.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-polishtostring.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-polishtostring.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-read.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-read.C | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-read.C:65:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-read.C:150:2: warning: #warning LAZY PROGRAMMER did not extend an array [-Wcpp] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.C | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.C: In member function ‘void sim4polish::s4p_linesToPolishGFF3(uint32, uint32, char**, uint32*)’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.C:346:20: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.C:347:55: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.C:370:116: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.C:383:52: warning: format ‘%s’ expects argument of type ‘char*’, but argument 3 has type ‘char (*)[1000]’ [-Wformat] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-updatescores.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-updatescores.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishList.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishList.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishBuilder.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishBuilder.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishFile.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishFile.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishReader.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishReader.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishWriter.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishWriter.C | |
| rm -f /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/libsim4.a && ar ruvs /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/libsim4.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4parameters.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/Xtend1.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/align.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/exon_cores.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/extend.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/glimmerSplice.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/greedy.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/mspManager.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/pluri_align.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/poly.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1a.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-1.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-2.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-3.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-4.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1_s.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_donor.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_acceptor.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_score.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/splice.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/table.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/util.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-compare.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-copy.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-deleteexon.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-exons.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-polishtostring.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-read.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-updatescores.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishList.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishBuilder.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishFile.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishReader.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishWriter.o | |
| ar: creating /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/libsim4.a | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4command.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4parameters.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4string.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/Xtend1.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/align.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/exon_cores.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/extend.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/glimmerSplice.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/greedy.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/mspManager.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/pluri_align.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/poly.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1a.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-1.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-2.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-3.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1-4.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sim4b1_s.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_donor.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_acceptor.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/sites_score.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/splice.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/table.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4core/util.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-compare.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-copy.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-deleteexon.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-exons.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-polishtostring.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-read.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-stringtopolish.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish-updatescores.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polish.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishList.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishBuilder.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishFile.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishReader.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/sim4polish/sim4polishWriter.o | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaFile.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaFile.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastqFile.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastqFile.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaStdin.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaStdin.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStore.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStore.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/sffFile.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/sffFile.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqFactory.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqFactory.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqCache.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqCache.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStream.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStream.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/merStream.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/merStream.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqCache.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqCache.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqStream.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqStream.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C:11:2: warning: #warning HOW DO WE TEST IF WE GET ALL THE MERS? [-Wcpp] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C: In function ‘int main(int, char**)’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C:223:64: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C:225:64: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C:228:64: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C:243:60: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C:245:60: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.C:248:60: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| rm -f /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a && ar ruvs /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaFile.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastqFile.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaStdin.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStore.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/sffFile.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqFactory.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqCache.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStream.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/merStream.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqCache.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqStream.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.o | |
| ar: creating /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaFile.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastqFile.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/fastaStdin.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStore.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/sffFile.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqFactory.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqCache.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/seqStream.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/merStream.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqCache.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-seqStream.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/test-merStream.o | |
| gcc -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet.c | |
| gcc -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-acgtspace.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-acgtspace.c | |
| gcc -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-colorspace.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-colorspace.c | |
| gcc -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/halign.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/halign.c | |
| gcc -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/reversecomplement.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/reversecomplement.c | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/kmer.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/kmer.C | |
| rm -f /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a && ar ruvs /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-acgtspace.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-colorspace.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/halign.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/reversecomplement.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/kmer.o | |
| ar: creating /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-acgtspace.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/alphabet-colorspace.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/halign.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/reversecomplement.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/kmer.o | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/file.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/file.c | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/file.c: In function ‘openFile’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/file.c:382:9: warning: variable ‘isRW’ set but not used [-Wunused-but-set-variable] | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/md5.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/md5.c | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/palloc.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/palloc.c | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.c | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.c: In function ‘qsort_algo’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.c:264:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.c: In function ‘qsort_thread’: | |
| /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.c:370:13: warning: variable ‘id’ set but not used [-Wunused-but-set-variable] | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/util.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/util.c | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bigQueue.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bigQueue.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedArray.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedArray.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedFile.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedFile.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/fibonacciNumbers.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/fibonacciNumbers.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/intervalList.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/intervalList.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/readBuffer.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/readBuffer.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/recordFile.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/recordFile.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/speedCounter.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/speedCounter.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/sweatShop.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/sweatShop.C | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/dict.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/dict.c | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/except.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/except.c | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/hash.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/hash.c | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/list.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/list.c | |
| gcc -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/sfx.o -c /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/sfx.c | |
| rm -f /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a && ar ruvs /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/file.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/md5.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/palloc.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/util.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bigQueue.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedArray.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedFile.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/fibonacciNumbers.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/intervalList.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/readBuffer.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/recordFile.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/speedCounter.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/sweatShop.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/mt19937ar/mt19937ar.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/dict.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/except.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/hash.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/list.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/sfx.o | |
| ar: creating /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/file.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/md5.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/palloc.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/qsort_mt.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/util.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bigQueue.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedArray.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/bitPackedFile.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/fibonacciNumbers.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/intervalList.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/readBuffer.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/recordFile.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/speedCounter.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/sweatShop.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/mt19937ar/mt19937ar.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/dict.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/except.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/hash.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/list.o | |
| a - /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/sfx.o | |
| g++ -L/usr/local/lib -o ESTmapper/terminate ESTmapper/terminate.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libsim4/libsim4.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeature.o -c atac-driver/libatac/atacFeature.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFeatureList.o -c atac-driver/libatac/atacFeatureList.C | |
| atac-driver/libatac/atacFeatureList.C: In member function ‘void atacFeatureList::add(atacFeature&)’: | |
| atac-driver/libatac/atacFeatureList.C:50:54: warning: operation on ‘((atacFeatureList*)this)->atacFeatureList::_featuresLen’ may be undefined [-Wsequence-point] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFile.o -c atac-driver/libatac/atacFile.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacFileStreamMerge.o -c atac-driver/libatac/atacFileStreamMerge.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatch.o -c atac-driver/libatac/atacMatch.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchList.o -c atac-driver/libatac/atacMatchList.C | |
| atac-driver/libatac/atacMatchList.C: In member function ‘void atacMatchList::add(atacMatch&)’: | |
| atac-driver/libatac/atacMatchList.C:50:49: warning: operation on ‘((atacMatchList*)this)->atacMatchList::_matchesLen’ may be undefined [-Wsequence-point] | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/libatac/atacMatchOrder.o -c atac-driver/libatac/atacMatchOrder.C | |
| rm -f atac-driver/libatac/libatac.a && ar ruvs atac-driver/libatac/libatac.a atac-driver/libatac/atacFeature.o atac-driver/libatac/atacFeatureList.o atac-driver/libatac/atacFile.o atac-driver/libatac/atacFileStreamMerge.o atac-driver/libatac/atacMatch.o atac-driver/libatac/atacMatchList.o atac-driver/libatac/atacMatchOrder.o | |
| ar: creating atac-driver/libatac/libatac.a | |
| a - atac-driver/libatac/atacFeature.o | |
| a - atac-driver/libatac/atacFeatureList.o | |
| a - atac-driver/libatac/atacFile.o | |
| a - atac-driver/libatac/atacFileStreamMerge.o | |
| a - atac-driver/libatac/atacMatch.o | |
| a - atac-driver/libatac/atacMatchList.o | |
| a - atac-driver/libatac/atacMatchOrder.o | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap.o -c atac-driver/alignOverlap/overlap.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-find.o -c atac-driver/alignOverlap/overlap-find.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-matchTree.o -c atac-driver/alignOverlap/overlap-matchTree.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-printAnno.o -c atac-driver/alignOverlap/overlap-printAnno.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-sort.o -c atac-driver/alignOverlap/overlap-sort.C | |
| ln -f /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/alignOverlap/overlap-process.C /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/alignOverlap/overlap-process1.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -DINDEX=1 -DNAME=process1 -DPOS1=pos1 -DPOS2=pos2 -DLEN2=len2 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process1.o -c atac-driver/alignOverlap/overlap-process1.C | |
| ln -f /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/alignOverlap/overlap-process.C /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/alignOverlap/overlap-process2.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -DINDEX=2 -DNAME=process2 -DPOS1=pos2 -DPOS2=pos1 -DLEN2=len1 -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/alignOverlap/overlap-process2.o -c atac-driver/alignOverlap/overlap-process2.C | |
| g++ -L/usr/local/lib -o atac-driver/alignOverlap/overlap atac-driver/alignOverlap/overlap.o atac-driver/alignOverlap/overlap-find.o atac-driver/alignOverlap/overlap-matchTree.o atac-driver/alignOverlap/overlap-printAnno.o atac-driver/alignOverlap/overlap-sort.o atac-driver/alignOverlap/overlap-process1.o atac-driver/alignOverlap/overlap-process2.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/gapShifter.o -c atac-driver/gapShifter/gapShifter.C | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/gapShifter atac-driver/gapShifter/gapShifter.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractSequence.o -c atac-driver/gapShifter/extractSequence.C | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/extractSequence atac-driver/gapShifter/extractSequence.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/extractUnmapped.o -c atac-driver/gapShifter/extractUnmapped.C | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/extractUnmapped atac-driver/gapShifter/extractUnmapped.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/coalesceMatches.o -c atac-driver/gapShifter/coalesceMatches.C | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/coalesceMatches atac-driver/gapShifter/coalesceMatches.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/correctGaps.o -c atac-driver/gapShifter/correctGaps.C | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/correctGaps atac-driver/gapShifter/correctGaps.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/testAtac.o -c atac-driver/gapShifter/testAtac.C | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/testAtac atac-driver/gapShifter/testAtac.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/cleanAtac.o -c atac-driver/gapShifter/cleanAtac.C | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/cleanAtac atac-driver/gapShifter/cleanAtac.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/gapShifter/projectFeatures.o -c atac-driver/gapShifter/projectFeatures.C | |
| atac-driver/gapShifter/projectFeatures.C:72:2: warning: #warning BROKEN [-Wcpp] | |
| g++ -L/usr/local/lib -o atac-driver/gapShifter/projectFeatures atac-driver/gapShifter/projectFeatures.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/lengthFilter/lengthFilter.o -c atac-driver/lengthFilter/lengthFilter.C | |
| g++ -L/usr/local/lib -o atac-driver/lengthFilter/lengthFilter atac-driver/lengthFilter/lengthFilter.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender.o -c atac-driver/matchExtender/matchExtender.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-dump.o -c atac-driver/matchExtender/matchExtender-dump.C | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/matchExtender/matchExtender-func.o -c atac-driver/matchExtender/matchExtender-func.C | |
| g++ -L/usr/local/lib -o atac-driver/matchExtender/matchExtender atac-driver/matchExtender/matchExtender.o atac-driver/matchExtender/matchExtender-dump.o atac-driver/matchExtender/matchExtender-func.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/mismatchCounter/mismatchCounter.o -c atac-driver/mismatchCounter/mismatchCounter.C | |
| g++ -L/usr/local/lib -o atac-driver/mismatchCounter/mismatchCounter atac-driver/mismatchCounter/mismatchCounter.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/statsGenerator/statsGenerator.o -c atac-driver/statsGenerator/statsGenerator.C | |
| atac-driver/statsGenerator/statsGenerator.C: In function ‘void tandemRepeatStats(atacFileStream&, atacFileStream&, atacFile&, seqCache*, seqCache*)’: | |
| atac-driver/statsGenerator/statsGenerator.C:268:41: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| atac-driver/statsGenerator/statsGenerator.C:270:41: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| g++ -L/usr/local/lib -o atac-driver/statsGenerator/statsGenerator atac-driver/statsGenerator/statsGenerator.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/uniqueFilter/uniqueFilter.o -c atac-driver/uniqueFilter/uniqueFilter.C | |
| g++ -L/usr/local/lib -o atac-driver/uniqueFilter/uniqueFilter atac-driver/uniqueFilter/uniqueFilter.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/ -I/home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/ -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/clumpMaker/clumpMaker.o -c atac-driver/clumpMaker/clumpMaker.C | |
| atac-driver/clumpMaker/clumpMaker.C: In function ‘int main(int, char**)’: | |
| atac-driver/clumpMaker/clumpMaker.C:220:12: warning: variable ‘isSorted’ set but not used [-Wunused-but-set-variable] | |
| g++ -L/usr/local/lib -o atac-driver/clumpMaker/clumpMaker atac-driver/clumpMaker/clumpMaker.o /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/atac-driver/libatac/libatac.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libseq/libseq.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libbio/libbio.a /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/libutil.a -pthread -ldl -lm -lbz2 | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_dpaligner.o -c atac-driver/chainer/localalign/GF_ALN_dpaligner.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_local.o -c atac-driver/chainer/localalign/GF_ALN_local.C | |
| atac-driver/chainer/localalign/GF_ALN_local.C: In function ‘void Align_Recursion(const char*, int, const char*, int, const Trapezoid*, int, int, int, double, int)’: | |
| atac-driver/chainer/localalign/GF_ALN_local.C:872:15: warning: variable ‘indel’ set but not used [-Wunused-but-set-variable] | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_overlap.o -c atac-driver/chainer/localalign/GF_ALN_overlap.C | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘void AVLinit()’: | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C:93:33: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘AVLnode* NEW(AVLnode*, Candidate*, AVLnode*)’: | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C:125:37: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C: In function ‘Local_Overlap* Find_Local_Overlap(int, int, int, int, Local_Segment*, int, int, double)’: | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C:396:40: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C:662:39: warning: deprecated conversion from string constant to ‘char*’ [-Wwrite-strings] | |
| atac-driver/chainer/localalign/GF_ALN_overlap.C:614:20: warning: variable ‘beg’ set but not used [-Wunused-but-set-variable] | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_loverlapper.o -c atac-driver/chainer/localalign/GF_ALN_loverlapper.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -o atac-driver/chainer/localalign/GF_ALN_pieceOlap.o -c atac-driver/chainer/localalign/GF_ALN_pieceOlap.C | |
| g++ -O2 -march=native -m64 -fPIC -D_REENTRANT -O3 -D_THREAD_SAFE -pthread -fmessage-length=0 -Wall -Wno-char-subscripts -funroll-loops -fexpensive-optimizations -finline-functions -fomit-frame-pointer -I/usr/include/python2.6 -o atac-driver/chainer/localalign/localAlignerInterfacemodule.o -c atac-driver/chainer/localalign/localAlignerInterfacemodule.C | |
| atac-driver/chainer/localalign/localAlignerInterfacemodule.C:24:20: fatal error: Python.h: No such file or directory | |
| compilation terminated. | |
| make: *** [atac-driver/chainer/localalign/localAlignerInterfacemodule.o] Error 1 | |
| == 2014-08-08 13:33:29,434 main.easyblock.<module> WARNING build failed (first 300 chars): EasyBuild crashed with an error (at easybuild/tools/run.py:382 in parse_cmd_output): cmd ". /etc/profile.d/modules.sh && make -j 1 install" exited with exitcode 2 and output: | |
| making /home/GMI/petar.forai/.local/easybuild/build/kmer/r1971/goolf-1.4.10-2014-04-11/kmer-code-1971-trunk/libutil/kazlib/ | |
| == 2014-08-08 13:33:29,435 main.MakeCp INFO Closing log for application name kmer version r1971 |
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