Skip to content

Instantly share code, notes, and snippets.

@boegelbot

boegelbot/easybuild_test_report_17140_easybuilders_preasybuild-easyconfigs_20235317-UTC-21-53-52.md

Created January 17, 2023 21:53
Show Gist options
  • Save boegelbot/96a94b73aeb91bca1134999cf30fde52 to your computer and use it in GitHub Desktop.
Save boegelbot/96a94b73aeb91bca1134999cf30fde52 to your computer and use it in GitHub Desktop.
Download ZIP
EasyBuild test report for easybuilders/easybuild-easyconfigs PR(s) #17140
Raw
easybuild_test_report_17140_easybuilders_preasybuild-easyconfigs_20235317-UTC-21-53-52.md

Test report for PR(s) easybuilders/easybuild-easyconfigs#17140

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS ncbi-vdb-3.0.0-gompi-2022a.eb

Time info

  • start: Tue, 17 Jan 2023 21:52:11 +0000 (UTC)
  • end: Tue, 17 Jan 2023 21:53:52 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.7.1.dev0-rd725dba81c73df2d345b590360cd8b54744c0943
  • easybuild-easyblocks version: 4.7.1.dev0-r3c6a1d10bd8b2a681b9581953866f66b43e0147c
  • command line:
eb --from-pr 17140 --debug --rebuild --robot --upload-test-report --download-timeout=1000
  • full configuration (includes defaults):
--accept-eula-for='.*'
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/boegelbot'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/project/def-maintainers/boegelbot/Rocky8/zen2/containers'
--cuda-compute-capabilities='7.0'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-backup-patched-files
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-extensions
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--download-timeout='1000.0'
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--filter-rpath-sanity-libs='libcuda.so,libcuda.so.1,libnvidia-ml.so,libnvidia-ml.so.1'
--fixed-installdir-naming-scheme
--from-pr='17140'
--generate-devel-module
--github-user='boegelbot'
--hooks='/home/boegelbot/boegelbot/eb_hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/project/def-maintainers/boegelbot/Rocky8/zen2'
--job-backend='GC3Pie'
--job-eb-cmd='eb'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/home/boegelbot/boegelbot'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--optarch='{\'Intel\': \'march=core-avx2\'}'
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/project/def-maintainers/boegelbot/Rocky8/zen2/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/project/def-maintainers/boegelbot/Rocky8/zen2'
--rebuild
--repository='FileRepository'
--repositorypath='/project/def-maintainers/boegelbot/Rocky8/zen2/ebfiles_repo'
--robot-paths=''
--robot='/home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'
--set-gid-bit
--show-progress-bar
--sourcepath='/project/def-maintainers/boegelbot/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--umask='022'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 8
  • cpu arch: x86_64
  • cpu arch name: zen2
  • cpu model: AMD EPYC 7742 64-Core Processor
  • cpu speed: 2249.998
  • cpu vendor: AMD
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.5.0 20210514 (Red Hat 8.5.0-4) (GCC) ;
  • glibc version: 2.28
  • hostname: jsczen2g1.int.jsc-zen2.easybuild-test.cluster
  • os name: Rocky Linux
  • os type: Linux
  • os version: 8.5
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Nov 9 2021, 14:44:26) ; [GCC 8.5.0 20210514 (Red Hat 8.5.0-3)]
  • system gcc path: /usr/bin/gcc
  • system python path: None
  • total memory: 64405

List of loaded modules

  • (none)

Environment

BASH_ENV = /cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/init/bash
BASH_FUNC_ml%% = () {  eval "$($LMOD_DIR/ml_cmd "$@")"
}
BASH_FUNC_module%% = () {  if [ -z "${LMOD_SH_DBG_ON+x}" ]; then
 case "$-" in 
 *v*x*)
 __lmod_sh_dbg='vx'
 ;;
 *v*)
 __lmod_sh_dbg='v'
 ;;
 *x*)
 __lmod_sh_dbg='x'
 ;;
 esac;
 fi;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 set +$__lmod_sh_dbg;
 echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output" 1>&2;
 fi;
 eval "$($LMOD_CMD bash "$@")" && eval $(${LMOD_SETTARG_CMD:-:} -s sh);
 __lmod_my_status=$?;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 echo "Shell debugging restarted" 1>&2;
 set -$__lmod_sh_dbg;
 fi;
 unset __lmod_sh_dbg;
 return $__lmod_my_status
}
BASH_FUNC_which%% = () {  ( alias;
 eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot "$@"
}
CC_CLUSTER = computecanada
DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/60008/bus
EASYBUILD_ACCEPT_EULA_FOR = .*
EASYBUILD_BUILDPATH = /tmp/boegelbot
EASYBUILD_CUDA_COMPUTE_CAPABILITIES = 7.0
EASYBUILD_GITHUB_USER = boegelbot
EASYBUILD_HOOKS = /home/boegelbot/boegelbot/eb_hooks.py
EASYBUILD_OPTARCH = Intel:march=core-avx2
EASYBUILD_PREFIX = /project/def-maintainers/boegelbot/Rocky8/zen2
EASYBUILD_SET_GID_BIT = 1
EASYBUILD_SOURCEPATH = /project/def-maintainers/boegelbot/sources
EASYBUILD_UMASK = 022
EB_ARGS = 
EB_PR = 17140
EB_PYTHON = python3
EB_SCRIPT_PATH = /home/boegelbot/easybuild/easybuild-framework/eb
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /home/boegelbot
HOSTNAME = jsczen2g1.int.jsc-zen2.easybuild-test.cluster
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_ADMIN_FILE = /cvmfs/soft.computecanada.ca/config/lmod/admin.list
LMOD_AVAIL_EXTENSIONS = no
LMOD_AVAIL_STYLE = grouped:system
LMOD_CMD = /cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec/lmod
LMOD_DIR = /cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/libexec
LMOD_PACKAGE_PATH = /cvmfs/soft.computecanada.ca/config/lmod/
LMOD_PKG = /cvmfs/soft.computecanada.ca/custom/software/lmod/lmod
LMOD_RC = /cvmfs/soft.computecanada.ca/config/lmod//lmodrc.lua
LMOD_ROOT = /cvmfs/soft.computecanada.ca/custom/software/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SHORT_TIME = 3600
LMOD_SYSTEM_DEFAULT_MODULES = gentoo/2020 imkl/2020.1.217 gcc/9.3.0 openmpi/4.0.3
LMOD_VERSION = 8.7.4
LMOD_sys = Linux
LOGNAME = boegelbot
MAIL = /var/spool/mail/boegelbot
MANPATH = /cvmfs/soft.computecanada.ca/custom/software/lmod/lmod/share/man::/opt/puppetlabs/puppet/share/man
MODULEPATH = /project/def-maintainers/boegelbot/Rocky8/zen2/modules/all
MODULEPATH_ROOT = /cvmfs/soft.computecanada.ca/easybuild/modules
MODULERCFILE = :/cvmfs/soft.computecanada.ca/config/lmod//modulerc
MODULESHOME = /cvmfs/soft.computecanada.ca/custom/software/lmod/lmod
OLDPWD = /home/boegelbot
PATH = /home/boegelbot/easybuild/easybuild-framework:/home/boegelbot/.local/bin:/home/boegelbot/.yarn/bin:/home/boegelbot/.config/yarn/global/node_modules/.bin:/home/boegelbot/.local/bin:/home/boegelbot/bin:/opt/software/slurm/bin:/home/boegelbot/easybuild/easybuild-framework:/home/boegelbot/.local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin
PWD = /home/boegelbot/boegelbot
PYTHONOPTIMIZE = 1
PYTHONPATH = /home/boegelbot/easybuild/easybuild-framework:/home/boegelbot/easybuild/easybuild-easyblocks:/home/boegelbot/easybuild/easybuild-easyconfigs
RSNT_ARCH = avx2
RSNT_CPU_VENDOR_ID = amd
RSNT_CUDA_DRIVER_VERSION = 460.73.01
RSNT_ENABLE_LMOD_CACHE = yes
RSNT_INTERCONNECT = ethernet
SHELL = /bin/sh
SHLVL = 5
SLURMD_NODENAME = jsczen2g1
SLURM_CLUSTER_NAME = jsc-zen2
SLURM_CONF = /etc/slurm/slurm.conf
SLURM_CPUS_ON_NODE = 8
SLURM_GET_USER_ENV = 1
SLURM_GTIDS = 0
SLURM_JOBID = 2066
SLURM_JOB_ACCOUNT = def-maintainers
SLURM_JOB_CPUS_PER_NODE = 8
SLURM_JOB_GID = 60008
SLURM_JOB_ID = 2066
SLURM_JOB_NAME = test_PR_17140
SLURM_JOB_NODELIST = jsczen2g1
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = cpubase_bycore_b1
SLURM_JOB_QOS = normal
SLURM_JOB_UID = 60008
SLURM_JOB_USER = boegelbot
SLURM_LOCALID = 0
SLURM_MEM_PER_CPU = 4000
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = jsczen2g1
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 8
SLURM_NTASKS = 8
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_RESTART_COUNT = 0
SLURM_SUBMIT_DIR = /home/boegelbot/boegelbot
SLURM_SUBMIT_HOST = jsczen2l1.int.jsc-zen2.easybuild-test.cluster
SLURM_TASKS_PER_NODE = 8
SLURM_TASK_PID = 523097
SLURM_TMPDIR = /localscratch/boegelbot.2066.0
SLURM_TOPOLOGY_ADDR = jsczen2g1
SLURM_TOPOLOGY_ADDR_PATTERN = node
SLURM_WORKING_CLUSTER = jsc-zen2:10.0.3.85:6817:9216:109
TMPDIR = /tmp
USER = boegelbot
XDG_CONFIG_DIRS = /etc/xdg
XDG_DATA_DIRS = /usr/local/share:/usr/share
XDG_RUNTIME_DIR = /run/user/60008
XDG_SESSION_ID = 74774
_ = /usr/bin/python3
_ModuleTable001_ = X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IGZhbHNlLApjX3Nob3J0VGltZSA9IGZhbHNlLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0ge30sCm1wYXRoQSA9IHsKIi9wcm9qZWN0L2RlZi1tYWludGFpbmVycy9ib2VnZWxib3QvUm9ja3k4L3plbjIvbW9kdWxlcy9hbGwiLAp9LApzeXN0ZW1CYXNlTVBBVEggPSAiL2N2bWZzL3NvZnQuY29tcHV0ZWNhbmFkYS5jYS9jdXN0b20vbW9kdWxlcyIsCn0K
_ModuleTable002_ = 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
_ModuleTable_Sz_ = 1
__Init_Default_Modules = 1
__LMOD_REF_COUNT_MODULEPATH = /project/def-maintainers/boegelbot/Rocky8/zen2/modules/all:2
__LMOD_STACK_LESSOPEN = fHwvdXNyL2Jpbi9sZXNzcGlwZS5zaCAlcw==
which_declare = declare -f
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment