AlexMikhalev

 docker logs -f rgcluster
Starting 30001
Starting 30002
Starting 30003
Starting 30004
Starting 30005
Starting 30006
Starting 30007
Starting 30008
Starting 30009

AlexMikhalev

curl -H "Content-Type: application/json" -X POST -d '{"search":"How does temperature and humidity affect the transmission of 2019-nCoV?"}' https://api.thepattern.digital/qasearch | jq .results
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed
100 31540  100 31456  100    84   1770      4  0:00:21  0:00:17  0:00:04  6940
[
  {
    "answer": "community transmission",
    "sentence": "At the time of this review April 6 2020 the disease termed covID 19 corona virus disease 2019 had become pandemic and spread to more than 203 countries and territories including community transmission in countries like the United States Germany France sPain Japan Singapore South Korea iRan and Italy and a large scale outbreak with more than 600 cases on the cruise ship Diamond Princess",
    "sentencekey": "sentence:0020ab317ef923b740c1d3db52083a4e48495f8a:{5M5}:8",
    "title": "SARS-CoV-2 Vaccines: Status Report"

AlexMikhalev

10:M 30 Apr 2021 21:27:20.002 * <rg> GEARS: QA cached called {'event': 'keymiss', 'key': 'cache_{06S}_{PMC261870.xml:{06S}:26}_Laser Correction', 'type': 'empty', 'value': None}


=== REDIS BUG REPORT START: Cut & paste starting from here ===
10:M 30 Apr 2021 21:27:20.002 # === ASSERTION FAILED ===
10:M 30 Apr 2021 21:27:20.002 # ==> module.c:4085 '(c->flags & CLIENT_BLOCKED) == 0' is not true

------ STACK TRACE ------

Backtrace:

AlexMikhalev

graph TD
    A[Christmas] -->|Get money| B(Go shopping)
    B --> C{Let me think}
    C -->|One| D[Laptop]
    C -->|Two| E[iPhone]
    C -->|Three| F[fa:fa-car Car]

AlexMikhalev

### This gears will pre-compute (encode) all sentences using BERT tokenizer for QA

tokenizer = None 

def loadTokeniser():
    global tokenizer
    from transformers import BertTokenizerFast
    tokenizer = BertTokenizerFast.from_pretrained("bert-large-uncased-whole-word-masking-finetuned-squad")
    return tokenizer

AlexMikhalev

tokenizer = None 
    
import numpy as np
import torch
import os 

config_switch=os.getenv('DOCKER', 'local')
if config_switch=='local':
    startup_nodes = [{"host": "127.0.0.1", "port": "30001"}, {"host": "127.0.0.1", "port":"30002"}, {"host":"127.0.0.1", "port":"30003"}]
else:

AlexMikhalev

tokenizer = None 
    
import numpy as np
import torch
import os 

config_switch=os.getenv('DOCKER', 'local')
if config_switch=='local':
    startup_nodes = [{"host": "127.0.0.1", "port": "30001"}, {"host": "127.0.0.1", "port":"30002"}, {"host":"127.0.0.1", "port":"30003"}]
else:

AlexMikhalev

#standard module
# peak memory usage (kilobytes on Linux, bytes on OS X)
import resource
resource.getrusage(resource.RUSAGE_SELF).ru_maxrss 
# pip install psutil
import os, psutil; print(psutil.Process(os.getpid()).memory_info().rss / 1024 ** 2)

AlexMikhalev

Problem

When I use docker to work with the shared workspace with host under Ubuntu, I find that files created by docker user is owned by root. This is not the same with macOS.

Maybe this is becuase docker is run by root user and the default user mapping mechanism is to map container-root to host-user or host-root. So can I map the container-root or container-any-user to host-current-user?

Fortunately the latest docker supports the re-map the container user to any host user via Linux namespace. Refer to this.

Linux namespace

AlexMikhalev

```
redis-cli -c -p 30001 -h 127.0.0.1
127.0.0.1:30001> keys *
 1) "processed_docs_stage1_para"
 2) "sentence:PMC293432.xml:{06S}"
 3) "sentence:PMC270701.xml:{06S}"
 4) "edges_matched_{06S}"
 5) "sentence:PMC222961.xml:{06S}"
 6) "processed_docs_stage3{06S}"
 7) "processed_docs_stage2_para{06S}"