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September 6, 2017 08:25
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{ | |
"cells": [ | |
{ | |
"cell_type": "code", | |
"execution_count": 1, | |
"metadata": { | |
"collapsed": true | |
}, | |
"outputs": [], | |
"source": [ | |
"# git clone https://github.com/openPMD/openPMD-example-datasets.git\n", | |
"# cd openPMD-example-datasets\n", | |
"# tar -xf example-2d.tar.gz\n", | |
"# tar -xf example-3d.tar.gz\n", | |
"# tar -xf example-thetaMode.tar.gz" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 2, | |
"metadata": { | |
"collapsed": true | |
}, | |
"outputs": [], | |
"source": [ | |
"import numpy as np\n", | |
"import h5py as h5" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 3, | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"data": { | |
"text/plain": [ | |
"False" | |
] | |
}, | |
"execution_count": 3, | |
"metadata": {}, | |
"output_type": "execute_result" | |
} | |
], | |
"source": [ | |
"f = h5.File('example-3d/hdf5/data00000100.h5')\n", | |
"# see https://github.com/openPMD/openPMD-standard/blob/latest/STANDARD.md#required-attributes-for-the-basepath\n", | |
"f[\"/data/100\"].attrs[\"dt\"].dtype is np.float32" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 4, | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"data": { | |
"text/plain": [ | |
"False" | |
] | |
}, | |
"execution_count": 4, | |
"metadata": {}, | |
"output_type": "execute_result" | |
} | |
], | |
"source": [ | |
"f = h5.File('example-2d/hdf5/data00000255.h5')\n", | |
"f[\"/data/255\"].attrs[\"dt\"].dtype is np.float32" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 5, | |
"metadata": {}, | |
"outputs": [ | |
{ | |
"data": { | |
"text/plain": [ | |
"False" | |
] | |
}, | |
"execution_count": 5, | |
"metadata": {}, | |
"output_type": "execute_result" | |
} | |
], | |
"source": [ | |
"f = h5.File('example-thetaMode/hdf5/data00000100.h5')\n", | |
"f[\"/data/100\"].attrs[\"dt\"].dtype is np.float32" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 6, | |
"metadata": { | |
"collapsed": true | |
}, | |
"outputs": [], | |
"source": [ | |
"f.close()" | |
] | |
}, | |
{ | |
"cell_type": "code", | |
"execution_count": 7, | |
"metadata": { | |
"collapsed": true | |
}, | |
"outputs": [ | |
{ | |
"data": { | |
"text/plain": [ | |
"\"\\nNon-standard attribute datatype for 'dt' (should be float, is double)\\nNon-standard attribute datatype for 'time' (should be float, is double)\\nNon-standard attribute datatype for 'gridSpacing' (should be float, is double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'gridSpacing' (should be float, is double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'dt' (should be float, is double)\\nNon-standard attribute datatype for 'time' (should be float, is double)\\nNon-standard attribute datatype for 'gridSpacing' (should be float, is double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'gridSpacing' (should be float, is double)\\nNon-standard attribute datatype for 'position' (should be vector of float, is vector of double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\nNon-standard attribute datatype for 'timeOffset' (should be float, is double)\\n\"" | |
] | |
}, | |
"execution_count": 7, | |
"metadata": {}, | |
"output_type": "execute_result" | |
} | |
], | |
"source": [ | |
"'''\n", | |
"Non-standard attribute datatype for 'dt' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'time' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'gridSpacing' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'gridSpacing' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'dt' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'time' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'gridSpacing' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'gridSpacing' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'position' (should be vector of float, is vector of double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"Non-standard attribute datatype for 'timeOffset' (should be float, is double)\n", | |
"'''" | |
] | |
} | |
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"display_name": "Python 3", | |
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"name": "python3" | |
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Turns out this is NOT an inconsistency.
https://github.com/openPMD/openPMD-standard/blob/latest/STANDARD.md#conventions-throughout-these-documents