CS76

""" ipo-galaxy/lib/galaxy/datatypes/binary.py """
class Cdf( Binary ):
    """Generic CDF file datatype implementation"""
    file_ext = 'cdf'

    def __init__( self, **kwd ):
        Binary.__init__( self, **kwd )

    def sniff( self, filename ):
        cdf_header = binascii.hexlify('CDF')

CS76

{
	"spectrumId": "CO000215",
	"mzStart": 65.0388,
	"mzStop": 145.0656,
	"peaks": [{
		"mz": 65.0388,
		"intensity": 24.0}, {
		"mz": 66.0464,
		"intensity": 133.0
	}, {

CS76

pdb	Hchain	Lchain	model	antigen_chain	antigen_type	antigen_het_name	antigen_name	short_header	date	compound	organism	heavy_species	light_species	antigen_species	authors	resolution	method	r_free	r_factor	scfv	engineered	heavy_subclass	light_subclass	light_ctype	affinity	delta_g	affinity_method	temperature	pmid
1mhp	H	L	0	A	protein	NA	integrin alpha 1, (residues 169-360)	IMMUNE SYSTEM	08/20/02	Crystal structure of a chimeric alpha1 integrin I-domain in complex with the Fab fragment of a humanized neutralizing antibody	RATTUS NORVEGICUS; MUS MUSCULUS	mus musculus	mus musculus	rattus norvegicus	Karpusas, M., Taylor, F., Ferrant, J., Weinreb, P., Garber, E.	2.8	X-RAY DIFFRACTION	0.272	0.213	False	True	IGHV3	IGKV1D	Kappa	None	None	None	None	None
1mhp	X	Y	0	B	protein	NA	integrin alpha 1, (residues 169-360)	IMMUNE SYSTEM	08/20/02	Crystal structure of a chimeric alpha1 integrin I-domain in complex with the Fab fragment of a humanized neutralizing antibody	RATTUS NORVEGICUS; MUS MUSCULUS	mus musculus	mus musculus	rattu

CS76

MetaboLightsID	ChEBIId	CompoundName	KEGGPathwaysMAppings
MTBLC100	CHEBI:100	(-)-medicarpin	Isoflavonoid biosynthesis; Biosynthesis of phenylpropanoids; Biosynthesis of secondary metabolites
MTBLC100241	CHEBI:100241	ciprofloxacin	ABC transporters
MTBLC10072	CHEBI:10072	xanthurenic acid	Tryptophan metabolism
MTBLC10136	CHEBI:10136	gingerol	Stilbenoid, diarylheptanoid and gingerol biosynthesis; Biosynthesis of secondary metabolites
MTBLC10280	CHEBI:10280	(E,E)-alpha-farnesene	Sesquiterpenoid and triterpenoid biosynthesis; Biosynthesis of secondary metabolites
MTBLC10319	CHEBI:10319	1-naphthol	Metabolism of xenobiotics by cytochrome P450; Naphthalene family
MTBLC10352	CHEBI:10352	beta-amyrin	Sesquiterpenoid and triterpenoid biosynthesis; Biosynthesis of terpenoids and steroids; Biosynthesis of secondary metabolites
MTBLC10360	CHEBI:10360	(R)-(+)-citronellol	Geraniol degradation; Biosynthesis of terpenoids and steroids; Biosynthesis of secondary metabolites
MTBLC10418	CHEBI:10418	trans-beta-farnesene	Sesquiterpeno

CS76

CS76

MetaboLightsID	ChEBIID	CompoundName	KEGGPathwaysMappings	MTBLSMapping
MTBLC100	CHEBI:100	(-)-medicarpin	Isoflavonoid biosynthesis; Biosynthesis of phenylpropanoids; Biosynthesis of secondary metabolites	-
MTBLC100241	CHEBI:100241	ciprofloxacin	ABC transporters	-
MTBLC10072	CHEBI:10072	xanthurenic acid	Tryptophan metabolism	MTBLS20 (Homo sapiens (Human)); MTBLS71 (Homo sapiens); 
MTBLC10136	CHEBI:10136	gingerol	Stilbenoid, diarylheptanoid and gingerol biosynthesis; Biosynthesis of secondary metabolites	MTBLS49 (Trypanosoma brucei brucei); 
MTBLC10280	CHEBI:10280	(E,E)-alpha-farnesene	Sesquiterpenoid and triterpenoid biosynthesis; Biosynthesis of secondary metabolites	-
MTBLC10319	CHEBI:10319	1-naphthol	Metabolism of xenobiotics by cytochrome P450; Naphthalene family	-
MTBLC10352	CHEBI:10352	beta-amyrin	Sesquiterpenoid and triterpenoid biosynthesis; Biosynthesis of terpenoids and steroids; Biosynthesis of secondary metabolites	MTBLS215 (reference compound); 
MTBLC10360	CHEBI:10360	(R)-(+)-citronellol	Geraniol d

CS76

0xc9d3E1E6e81B5bbAA34556C0e2417a0468B232D2

CS76

<dependency>
  <groupId>org.openscience.cdk</groupId>
  <artifactId>cdk-bundle</artifactId>
  <version>1.5.15</version>
</dependency>

CS76

@lxpanel --profile LXDE-pi
@pcmanfm --desktop --profile LXDE-pi
#@xscreensaver -no-splash
@point-rpi
@xset s off
@xset s noblank
@xset -dpms
@sed -i 's/"exited_cleanly":false/"exited_cleanly":true/' ~/.config/chromium/Default/Preferences
@/usr/bin/chromium-browser --noerrdialogs --kiosk http://kosmos.inpachsolutions.co.uk/#/

CS76

<tool id="metabolights_downloader" name="Download MetaboLights Study" version="0.1.0">
    <command detect_errors="exit_code"><![CDATA[
#if $aspera_download.use_aspera == 'true'
    #if $aspera_download.aspera_password
        export ASPERA_SCP_PASS="$aspera_download.aspera_password";
    #else
        export ASPERA_SCP_PASS="Xz68YfDe";
    #end if

    #set $ascp_path='which ascp || which ~/.aspera/cli/bin/ascp || echo "false"'