DanaCase
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| "for allowing vundles | |
| set nocompatible | |
| filetype plugin indent on | |
| syntax on | |
| set backspace=2 | |
| set clipboard=unnamed | |
| set t_Co=256 | |
| set background=dark | |
| let g:solarized_temrcolors=256 |
DanaCase
/ points_to_patches.groovy
Created
February 27, 2018 19:17
Convert a list of patch coordinates to qupath annotations
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| import qupath.lib.scripting.QP | |
| import qupath.lib.roi.RectangleROI | |
| import qupath.lib.objects.PathAnnotationObject | |
| points_list = [[0,0]] | |
| def hierarchy = QP.getCurrentHierarchy() | |
| points_list.each { |
DanaCase
/ AperioToQuPath.groovy
Last active
May 6, 2023 09:05
Convert Exported Aperio Image Scope Annotations to QuPath Annotations
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| import qupath.lib.scripting.QP | |
| import qupath.lib.geom.Point2 | |
| import qupath.lib.roi.PolygonROI | |
| import qupath.lib.objects.PathAnnotationObject | |
| import qupath.lib.images.servers.ImageServer | |
| //Aperio Image Scope displays images in a different orientation | |
| def rotated = true |
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