https:ecl.earthchem.orgview.phpid=839.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "id": "43a58753",
   "metadata": {
    "papermill": {},
    "tags": [
     "parameters"
    ]
   },
   "outputs": [],
   "source": [
    "#github.com/nteract/papermill'parameters'tag used to inject them into template then post a gist runable by colab\n",
    "url,ext,urn=None,None,None\n",
    "%load_ext rpy2.ipython\n",
    "%load_ext google.colab.data_table\n",
    "import httpimport\n",
    "with httpimport.github_repo('earthcube', 'earthcube_utilities'):\n",
    "  import earthcube_utilities as ec\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "id": "8fa1b3ac",
   "metadata": {
    "tags": [
     "injected-parameters"
    ]
   },
   "outputs": [],
   "source": [
    "# Parameters\n",
    "url = \"https://ecl.earthchem.org/view.php?id=839\"\n",
    "ext = \"application/vnd.ms-excel\"\n",
    "urn = \"urn:gleaner:summoned:earthchem:fd8e38eb03f8be290ef91f349a20287348f1b317\"\n",
    "q = None\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "id": "53c94ce5",
   "metadata": {
    "papermill": {},
    "tags": []
   },
   "outputs": [],
   "source": [
    "ec.wget_rdf(urn)\n",
    "#!ls -l   or FilePaneBrowser on left, to see it\n",
    "df=ec.read_file(url,ext)\n",
    "df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "id": "3675429d",
   "metadata": {
    "papermill": {},
    "tags": []
   },
   "outputs": [],
   "source": [
    "!ls -l "
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "id": "1ca27b07",
   "metadata": {
    "papermill": {},
    "tags": []
   },
   "outputs": [],
   "source": [
    "ec.viz() #shows .nt metadata from urn, can use for (rdf)xml as well "
   ]
  }
 ],
 "metadata": {
  "celltoolbar": "Tags",
  "kernelspec": {
   "display_name": "Python 3",
   "language": "python",
   "name": "python3"
  },
  "language_info": {
   "codemirror_mode": {
    "name": "ipython",
    "version": 3
   },
   "file_extension": ".py",
   "mimetype": "text/x-python",
   "name": "python",
   "nbconvert_exporter": "python",
   "pygments_lexer": "ipython3",
   "version": "3.8.10"
  },
  "papermill": {
   "default_parameters": {},
   "environment_variables": {},
   "input_path": "/app/templates/template.ipynb",
   "output_path": "/tmp/https:ecl.earthchem.orgview.phpid=839.ipynb",
   "parameters": {
    "ext": "application/vnd.ms-excel",
    "q": null,
    "url": "https://ecl.earthchem.org/view.php?id=839",
    "urn": "urn:gleaner:summoned:earthchem:fd8e38eb03f8be290ef91f349a20287348f1b317"
   },
   "version": "2.4.0"
  }
 },
 "nbformat": 4,
 "nbformat_minor": 5
}