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#!/bin/bash | |
# install CUDA Toolkit v9.0 | |
# instructions from https://developer.nvidia.com/cuda-downloads (linux -> x86_64 -> Ubuntu -> 16.04 -> deb) | |
CUDA_REPO_PKG="cuda-repo-ubuntu1604-9-0-local_9.0.176-1_amd64-deb" | |
wget https://developer.nvidia.com/compute/cuda/9.0/Prod/local_installers/${CUDA_REPO_PKG} | |
sudo dpkg -i ${CUDA_REPO_PKG} | |
sudo apt-key adv --fetch-keys http://developer.download.nvidia.com/compute/cuda/repos/ubuntu1604/x86_64/7fa2af80.pub | |
sudo apt-get update | |
sudo apt-get -y install cuda-9-0 |
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#!/usr/bin/python | |
"""Simple HTTP Server With Upload. | |
This module builds on BaseHTTPServer by implementing the standard GET | |
and HEAD requests in a fairly straightforward manner. | |
""" | |
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USAGE = ''' | |
Usage example: | |
python tabs2spaces.py . 4 ".*\.py$" | |
''' | |
import io | |
import argparse | |
import os |
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#!/usr/bin/env bash | |
# Installs ffmpeg from source (HEAD) with libaom and libx265, as well as a few | |
# other common libraries | |
# binary will be at ~/bin/ffmpeg | |
sudo apt update && sudo apt upgrade -y | |
mkdir -p ~/ffmpeg_sources ~/bin | |
export PATH="$HOME/bin:$PATH" |
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## RNA-seq analysis with DESeq2 | |
## Stephen Turner, @genetics_blog | |
# RNA-seq data from GSE52202 | |
# http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=gse52202. All patients with | |
# ALS, 4 with C9 expansion ("exp"), 4 controls without expansion ("ctl") | |
# Import & pre-process ---------------------------------------------------- | |
# Import data from featureCounts |