PiotrZakrzewski

psql -U tm_cz -h localhost transmart
sudo -u postgres psql transmart

PiotrZakrzewski

numpy.fromiter((<some_func>(x) for x in <something>),<dtype>,<size of something>)

PiotrZakrzewski

import numpy as np
import pandas as pd
 
matrix = np.zeros((10,10))
def bla(m):
  print(m.dot())
bla(matrix))

PiotrZakrzewski

import javax.xml.namespace.QName;
import javax.xml.soap.*;

public class SOAPClientSAAJ {

    public static void main(String args[]) throws Exception {
        SOAPConnectionFactory soapConnectionFactory = SOAPConnectionFactory.newInstance();
        SOAPConnection soapConnection = soapConnectionFactory.createConnection();

        String url = "http://ocdu-openclinica-dev.thehyve.net/OpenClinica-ws/ws/study/v1";

PiotrZakrzewski

StringWriter sw = new StringWriter();
        Transformer t = TransformerFactory.newInstance().newTransformer();
        t.setOutputProperty(OutputKeys.OMIT_XML_DECLARATION, "yes");
        t.transform(new DOMSource(faultNode), new StreamResult(sw));
        String content = sw.toString();
        System.out.println("Fault children: " + content);

PiotrZakrzewski

import networkx as nx

players = [1,2,3,4]
def optimal_claim(_game_map, _player):
    """find single tile increasing total synergy bonus"""
    x_positions, y_positions = np.where(_game_map == 0)
    positions = zip(x_positions, y_positions)
    hiscore = None
    best = None
    for x, y in positions:

PiotrZakrzewski

<SOAP-ENV:Envelope xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"
                   xmlns:beans="http://openclinica.org/ws/beans" xmlns:v1="http://openclinica.org/ws/study/v1">
    <SOAP-ENV:Header>
        <wsse:Security xmlns:wsse="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-secext-1.0.xsd"
                       SOAP-ENV:mustUnderstand="1">
            <wsse:UsernameToken
                    xmlns:wsu="http://docs.oasis-open.org/wss/2004/01/oasis-200401-wss-wssecurity-utility-1.0.xsd"
                    wsu:Id="UsernameToken-27777511">
                <wsse:Username>piotr</wsse:Username>
                <wsse:Password

PiotrZakrzewski

<SOAP-ENV:Envelope xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/">
    <SOAP-ENV:Header/>
    <SOAP-ENV:Body>
        <createResponse xmlns="http://openclinica.org/ws/study/v1">
            <result xmlns="http://openclinica.org/ws/study/v1">Fail</result>
            <error xmlns="http://openclinica.org/ws/study/v1">No study identifier was provided</error>
        </createResponse>
    </SOAP-ENV:Body>
</SOAP-ENV:Envelope>

PiotrZakrzewski

#Patient Registration

• presence of required fields. Taken from Study parameters.
• Study exists in OC,
• Site exist in the study
• uniqueness of Study Subject ID (SSID) within file
• width of SSID max 30 characters
• gender is either "m" or "f"
• uniqueness of PersonID in the Study
• date format of Date of Enrollment
• Width of Secondary ID max 30 characters

PiotrZakrzewski

#!/bin/python
import click
from os import walk, makedirs
from os.path import join
from shutil import copy

@click.command()
@click.option('--source', help="""Path to the grails 2 project""", type=file)
@click.option('--destination',
        help="""Path to the bootstrapped grails 3 project""", type=file)