QuentinAndre

The data of Mertens et al. 2022 (https://doi.org/10.1073/pnas.2107346118), with full author information and DOI added.

To recover authors and DOI, I queried the CrossRef API with the title of the paper: "http://api.crossref.org/works?query.bibliographic={title}&rows=2".

QuentinAndre

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QuentinAndre

QuentinAndre

import numpy as np
import scipy.stats as stats
import matplotlib.pyplot as plt
import seaborn as sns
def exclude_zscore_outliers(x):
    """
    A small utility function to exclude *extreme outliers**:
    values that are above or below 2 z-score.
    """
    std = x.std()

QuentinAndre

# Typical usage: The --no-prompt is important (layout is all messed up otherwise).

  jupyter nbconvert MySuperNotebook.ipynb --to html --no-prompt --template code_cells_toggle.tpl

# By default, all cells are hidden. You can override this behavior for some cells by giving them a 'code_shown' tag.

QuentinAndre

QuentinAndre

var default_matrix = [
    ['V', 'H', 'W', 'X', 'S', 'C', 'E', 'P', 'T', 'E', 'R', 'C', 'R', 'S', 'P', 'S', 'J', 'T'],
    ['S', 'T', 'T', 'T', 'N', 'X', 'D', 'Y', 'D', 'X', 'L', 'M', 'W', 'K', 'A', 'O', 'B', 'C'],
    ['G', 'N', 'A', 'R', 'C', 'W', 'O', 'E', 'A', 'Y', 'T', 'R', 'S', 'V', 'L', 'V', 'G', 'J'],
    ['C', 'T', 'O', 'D', 'O', 'P', 'O', 'F', 'S', 'N', 'N', 'R', 'A', 'H', 'A', 'E', 'G', 'P'],
    ['E', 'O', 'B', 'M', 'R', 'S', 'D', 'R', 'E', 'C', 'O', 'A', 'O', 'E', 'C', 'R', 'I', 'A'],
    ['R', 'I', 'L', 'I', 'M', 'F', 'N', 'M', 'C', 'N', 'E', 'U', 'S', 'K', 'E', 'E', 'P', 'A'],
    ['J', 'E', 'N', 'O', 'A', 'O', 'N', 'O', 'O', 'M', 'S', 'N', 'I', 'T', 'K', 'I', 'U', 'H'],
    ['H', 'C', 'T', 'M', 'N', 'R', 'C', 'H', 'C', 'E', 'O', 'N', 'T', 'N', 'Y', 'G', 'W', 'L'],
    ['E', 'T', 'I', 'R', 'E', 'Y', 'H', 'O', 'H', 'M', 'G', 'T', 'I', 'D', 'H', 'N', 'L', 'N'],