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from time import time # For tracking how long everything is taking | |
import os | |
import matplotlib.pyplot as plt # For plotting | |
import matplotlib.ticker as ticker | |
import geopandas as gpd # For geographic data | |
import pandas as pd # For population data | |
from shapely.geometry import Polygon # Used to filter out empty polygons |
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// Adapted from https://github.com/vercel/next.js/blob/dda62b693e3e9cf9fd566085e7372c46c16fa14a/packages/next/src/server/accept-header.ts#L13 | |
interface Selection { | |
pos: number | |
q: number | |
token: string | |
} | |
export function acceptedLanguages(rawHeader: string) { | |
const header = rawHeader.replace(/[ \t]/g, '') |
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(async function () { | |
const API_KEY = "YOUR_API_KEY"; | |
const SYSTEM_PROMPT = "Summarize the following article in 10 bullet points:"; | |
async function getSummary(text) { | |
const API_URL = "https://api.openai.com/v1/chat/completions"; | |
const data = { | |
model: "gpt-3.5-turbo-16k", | |
messages: [ | |
{ |
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function getSelectedText() { | |
return window.getSelection().toString(); | |
} | |
let restartTimeout = null; | |
function restartPeriodically() { | |
window.speechSynthesis.pause(); | |
window.speechSynthesis.resume(); | |
restartTimeout = setTimeout(restartPeriodically, 5000); | |
} |
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import tempfile | |
import subprocess | |
import openai | |
from telegram import Update, InlineQueryResultArticle, InputTextMessageContent | |
from telegram.ext import ( | |
filters, | |
MessageHandler, | |
ApplicationBuilder, |
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import re | |
import os | |
import pdfminer.high_level as pdf_reader | |
import csv | |
PATTERNS = [ | |
re.compile(p, re.M) | |
for p in [ | |
r"^Tumor Mutational Burden\s+([^\s]+|Not Evaluable)\s+mutations-per-megabase$(?:\n|\s)+Microsatellite Instability(?:\n|\s)+([^\n]+)$", |
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import re | |
import os | |
import pdfminer.high_level as pdf_reader | |
import csv | |
ignore_list = ["GENE", "MSI-High", ""] | |
def get_pattern(text: str) -> re.Pattern[str]: | |
if "FMI Sample ID" in text: |
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for path in cwd.rglob("*.py"): | |
if 'pipstrap' in str(path): | |
continue | |
if str(path).count('/dev/') > 1: | |
continue | |
text = path.read_text() | |
if 'analytics_view_id' not in text: | |
continue | |
print('replacing in ', path) | |
for k, v in d.items(): |
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import collections | |
import typing | |
import unicodedata | |
import json | |
import re | |
T = typing.TypeVar("T") | |
K = typing.TypeVar("K") | |
Message = typing.Any |
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