Sometimes you want to have a subdirectory on the master branch be the root directory of a repository’s gh-pages branch. This is useful for things like sites developed with Yeoman, or if you have a Jekyll site contained in the master branch alongside the rest of your code.
For the sake of this example, let’s pretend the subfolder containing your site is named dist.
Remove the dist directory from the project’s .gitignore file (it’s ignored by default by Yeoman).
People
 :bowtie: |
😄 :smile: |
😆 :laughing: |
|---|---|---|
😊 :blush: |
😃 :smiley: |
:relaxed: |
😏 :smirk: |
😍 :heart_eyes: |
😘 :kissing_heart: |
😚 :kissing_closed_eyes: |
😳 :flushed: |
😌 :relieved: |
😆 :satisfied: |
😁 :grin: |
😉 :wink: |
😜 :stuck_out_tongue_winking_eye: |
😝 :stuck_out_tongue_closed_eyes: |
😀 :grinning: |
😗 :kissing: |
😙 :kissing_smiling_eyes: |
😛 :stuck_out_tongue: |
| git branch -m old_branch new_branch # Rename branch locally | |
| git push origin :old_branch # Delete the old branch | |
| git push --set-upstream origin new_branch # Push the new branch, set local branch to track the new remote |
| #!/bin/bash | |
| set -e | |
| # Defaults ------------------------------------------------------ | |
| MINICONDA_DIR="${HOME}/miniconda" | |
| INSTALL_DIR="$(pwd)/tools" | |
| TO_INSTALL="bedtools,samtools,tabix,bigWigSummary" | |
| INSTALL_MINICONDA=1 |
| "title" "gpl" "bioc_package" "manufacturer" "organism" "data_row_count" | |
| "Illumina Sentrix Array Matrix (SAM) - GoldenGate Methylation Cancer Panel I" "GPL15380" "GGHumanMethCancerPanelv1" "Illumina" "Homo sapiens" 1536 | |
| "Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)" "GPL8490" "IlluminaHumanMethylation27k" "Illumina, Inc." "Homo sapiens" 27578 | |
| "Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)" "GPL13534" "IlluminaHumanMethylation450k" "Illumina, Inc." "Homo sapiens" 485577 | |
| "GE Healthcare/Amersham Biosciences CodeLink™ ADME Rat 16-Assay Bioarray" "GPL2898" "adme16cod" "GE Healthcare" "Rattus norvegicus" 1280 | |
| "[AG] Affymetrix Arabidopsis Genome Array" "GPL71" "ag" "Affymetrix" "Arabidopsis thaliana" 8297 | |
| "[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array" "GPL198" "ath1121501" "Affymetrix" "Arabidopsis thaliana" 22810 | |
| "[Bovine] Affymetrix Bovine Genome Array" "GPL2112" "bovine" "Affymetrix" "Bos taurus" 24128 | |
| "[Canine] Affymetrix Canine Genome 1.0 Array" "GPL39 |
| #' --- | |
| #' output: | |
| #' html_document: | |
| #' keep_md: TRUE | |
| #' --- | |
| #+ include = FALSE | |
| library(dplyr) | |
| #' Responses to [my |
| #!/bin/bash | |
| # function Extract for common file formats | |
| function extract { | |
| if [ -z "$1" ]; then | |
| # display usage if no parameters given | |
| echo "Usage: extract <path/file_name>.<zip|rar|bz2|gz|tar|tbz2|tgz|Z|7z|xz|ex|tar.bz2|tar.gz|tar.xz>" | |
| else | |
| if [ -f "$1" ] ; then | |
| NAME=${1%.*} |
| id | name | type | class | released | |
|---|---|---|---|---|---|
| T01 | SupCar | toy | vehicle | yes | |
| T02 | SupPlane | toy | vehicle | no | |
| M01 | JeepX | model | vehicle | yes | |
| M02 | AircraftX | model | vehicle | yes | |
| M03 | Runner | model | people | yes | |
| M04 | Dancer | model | people | no |
Ensembl's VEP (Variant Effect Predictor) is popular for how it picks a single effect per gene as detailed here, its CLIA-compliant HGVS variant format, and Sequence Ontology nomenclature for variant effects.
To follow these instructions, we'll assume you have these packaged essentials installed:
## For Debian/Ubuntu system admins ##
sudo apt-get install -y build-essential git libncurses-dev
## For RHEL/CentOS system admins ##
sudo yum groupinstall -y 'Development Tools'
sudo yum install -y git ncurses-devel
