Created
January 4, 2017 16:14
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(partial) EasyBuild log for failed build of /tmp/eb-B3gTBZ/files_pr3968/f/FFTW/FFTW-3.3.5-gompi-2017a.eb (PR #3968)
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== 2017-01-04 17:13:58,957 easyblock.py:261 INFO This is EasyBuild 3.0.2 (framework: 3.0.2, easyblocks: 3.0.2) on host node2519.golett.os. | |
== 2017-01-04 17:13:58,957 easyblock.py:267 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyblocks/generic/configuremake.pyo) | |
== 2017-01-04 17:13:58,957 easyblock.py:753 INFO Build dir set to /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a | |
== 2017-01-04 17:13:58,957 config.py:423 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software | |
== 2017-01-04 17:13:58,957 easyconfig.py:1650 DEBUG Determining software installation subdir for <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:58,957 easyconfig.py:1656 DEBUG Obtained subdir FFTW/3.3.5-gompi-2017a | |
== 2017-01-04 17:13:58,958 easyblock.py:792 INFO Software install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/FFTW/3.3.5-gompi-2017a | |
== 2017-01-04 17:13:58,958 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules | |
== 2017-01-04 17:13:58,958 easyblock.py:797 INFO Module install dir set to /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all | |
== 2017-01-04 17:13:58,958 easyblock.py:246 INFO Init completed for application name FFTW version 3.3.5 | |
== 2017-01-04 17:13:58,958 easyblock.py:2477 INFO Obtained application instance of for FFTW (easyblock: ConfigureMake) | |
== 2017-01-04 17:13:58,958 easyblock.py:2490 DEBUG Skip set to False | |
== 2017-01-04 17:13:58,958 build_log.py:216 INFO building and installing FFTW/3.3.5-gompi-2017a... | |
== 2017-01-04 17:13:58,958 easyblock.py:2263 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
== 2017-01-04 17:13:58,959 build_log.py:216 INFO fetching files... | |
== 2017-01-04 17:13:58,959 easyblock.py:2271 INFO Starting fetch step | |
== 2017-01-04 17:13:58,959 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:58,959 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:58,959 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:58,959 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:58,959 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:58,959 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:58,960 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:58,960 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:58,960 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:58,960 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:58,960 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:58,960 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:58,960 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:58,960 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:58,960 easyblock.py:2274 INFO Running method fetch_step part of step fetch | |
== 2017-01-04 17:13:58,961 easyblock.py:1446 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2017-01-04 17:13:58,961 filetools.py:237 INFO Command eb found at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/bin/eb | |
== 2017-01-04 17:13:58,961 tools.py:261 DEBUG Also considering installation prefix /user/data/gent/vsc400/vsc40023/easybuild_easy_installed... | |
== 2017-01-04 17:13:58,961 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,961 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-B3gTBZ/files_pr3968/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,961 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,961 tools.py:266 DEBUG Checking for easybuild/easyconfigs at easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_base-2.5.5-py2.7.egg/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/vsc_install-0.10.20-py2.7.egg/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_framework-3.0.2.dev0-py2.6.egg/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyblocks-3.0.2-py2.6.egg/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:270 DEBUG Added /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.0.2-py2.6.egg/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/MySQLdb/1.2.5-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/MySQL_python-1.2.5-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,962 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /apps/gent/SL6/sandybridge/software/psutil/3.4.2-intel-2016a-Python-2.7.11/lib/python2.7/site-packages/psutil-3.4.2-py2.7-linux-x86_64.egg/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,963 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/keyring/lib/python2.7/site-packages/keyring-3.8/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,963 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,963 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/scratch/gent/vsc400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,963 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python27.zip/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,963 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,963 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/plat-linux2/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,963 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-tk/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-old/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/lib-dynload/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/home/gent/vsc400/vsc40023/.local/lib/python2.7/site-packages/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/pbs/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python2.7/site-packages/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python2.7/site-packages/gitdb/ext/smmap/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,964 tools.py:266 DEBUG Checking for easybuild/easyconfigs at /user/data/gent/vsc400/vsc40023/easybuild_easy_installed/easybuild/easyconfigs | |
== 2017-01-04 17:13:58,968 easyblock.py:590 INFO Found file fftw-3.3.5.tar.gz at /user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz | |
== 2017-01-04 17:13:58,968 easyblock.py:338 DEBUG File /user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz found for source fftw-3.3.5.tar.gz | |
== 2017-01-04 17:13:58,968 easyblock.py:350 INFO Added sources: [{'path': '/user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz', 'cmd': None, 'finalpath': '/tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a', 'name': 'fftw-3.3.5.tar.gz', 'checksum': None}] | |
== 2017-01-04 17:13:58,968 easyblock.py:1487 INFO no patches provided | |
== 2017-01-04 17:13:58,969 filetools.py:514 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2017-01-04 17:13:58,979 easyblock.py:1496 INFO md5 checksum for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz: 6cc08a3b9c7ee06fdd5b9eb02e06f569 | |
== 2017-01-04 17:13:58,979 config.py:423 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules | |
== 2017-01-04 17:13:58,979 easyblock.py:1513 INFO Checking dirs that need to be created: ['/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/FFTW/3.3.5-gompi-2017a', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/FFTW', '/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/numlib/FFTW'] | |
== 2017-01-04 17:13:58,981 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/FFTW/3.3.5-gompi-2017a | |
== 2017-01-04 17:13:58,981 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/FFTW | |
== 2017-01-04 17:13:58,982 filetools.py:995 DEBUG Not creating existing path /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/numlib/FFTW | |
== 2017-01-04 17:13:58,982 easyblock.py:2263 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
== 2017-01-04 17:13:58,982 build_log.py:216 INFO creating build dir, resetting environment... | |
== 2017-01-04 17:13:58,982 easyblock.py:2271 INFO Starting ready step | |
== 2017-01-04 17:13:58,982 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:58,982 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:58,982 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:58,982 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:58,983 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:58,983 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:58,983 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:58,983 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:58,983 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:58,983 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:58,983 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:58,983 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:58,983 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:58,984 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:58,984 easyblock.py:2274 INFO Running method check_readiness_step part of step ready | |
== 2017-01-04 17:13:58,984 easyblock.py:1401 DEBUG Desired parallelism specified via 'parallel' build option: None | |
== 2017-01-04 17:13:58,985 affinity.py:209 DEBUG sched_getaffinity for pid 13867 returned cpuset 0-23 | |
== 2017-01-04 17:13:58,985 run.py:86 DEBUG Using cached value for command 'ulimit -u': ('4096\n', 0) | |
== 2017-01-04 17:13:58,985 easyblock.py:1404 INFO Setting parallelism: 24 | |
== 2017-01-04 17:13:58,985 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2017-01-04 17:13:58,985 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2017-01-04 17:13:58,985 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2017-01-04 17:13:58,985 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /tmp/eb-B3gTBZ/tmpVJdC8l/hpcugent | |
== 2017-01-04 17:13:59,018 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
; stderr: cluster/golett | |
== 2017-01-04 17:13:59,018 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
== 2017-01-04 17:13:59,018 modules.py:682 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
== 2017-01-04 17:13:59,019 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
== 2017-01-04 17:13:59,019 modules.py:682 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
== 2017-01-04 17:13:59,019 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
== 2017-01-04 17:13:59,019 easyblock.py:1409 WARNING Loaded modules detected: ['cluster/golett'] | |
== 2017-01-04 17:13:59,019 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [] | |
== 2017-01-04 17:13:59,019 toolchain.py:375 DEBUG add_dependencies: adding toolchain dependencies [] | |
== 2017-01-04 17:13:59,019 modules.py:418 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'lmod', '--show-hidden')': ['3to2/1.1.1-intel-2016b-Python-2.7.12', 'ABINIT/8.0.8b-intel-2016b', 'ART/2016.06.05-intel-2016b', 'ASE/3.11.0-intel-2016b-Python-2.7.12', 'ATK/2.22.0-intel-2016b', 'Autoconf/2.69-foss-2016b', 'Autoconf/2.69-foss-2017a', 'Autoconf/2.69-intel-2016b', 'Automake/1.15-foss-2016b', 'Automake/1.15-foss-2017a', 'Automake/1.15-intel-2016b', 'Autotools/20150215-foss-2016b', 'Autotools/20150215-foss-2017a', 'Autotools/20150215-intel-2016b', 'BBMap/36.62-intel-2016b-Java-1.8.0_112', 'BEDTools/2.26.0-intel-2016b', 'BWA/0.7.15-intel-2016b', 'BamTools/2.4.0-foss-2016b', 'BamUtil/1.0.13-intel-2016b', 'BioPerl/1.7.0-foss-2016b-Perl-5.24.0', 'Biopython/1.68-foss-2016b-Python-2.7.12', 'Biopython/1.68-intel-2016b-Python-2.7.12', 'Biopython/1.68-intel-2016b-Python-3.5.2', 'Bison/2.7', 'Bison/3.0.4', 'Bison/3.0.4-GCCcore-5.4.0', 'Bison/3.0.4-GCCcore-6.3.0', 'Bison/3.0.4-foss-2016b', 'Bison/3.0.4-intel-2016b', 'Blender/2.77a-intel-2016b-Python-3.5.2', 'Blosc/1.11.1-intel-2016b', 'Boost/1.61.0-foss-2016b', 'Boost/1.61.0-foss-2016b-Python-2.7.12', 'Boost/1.61.0-intel-2016b', 'Boost/1.61.0-intel-2016b-Python-2.7.12', 'CBLAS/20110120-foss-2016b', 'CDO/1.7.2-intel-2016b', 'CGAL/4.8.1-intel-2016b', 'CGAL/4.8.1-intel-2016b-Python-2.7.12', 'CMake/3.4.3-foss-2016b', 'CMake/3.5.2-foss-2016b', 'CMake/3.5.2-intel-2016b', 'CMake/3.6.1-foss-2016b', 'CMake/3.6.1-intel-2016b', 'CMake/3.6.2-foss-2016b', 'CMake/3.6.2-intel-2016b', 'CMake/3.7.1-intel-2016b', 'CP2K/3.0-intel-2016b', 'CP2K/3.0-intel-2016b-psmp', 'Cantera/2.2.1-intel-2016b-Python-2.7.12', 'Cargo/0.13.0-foss-2016b', 'CheMPS2/1.8-intel-2016b', 'Clustal-Omega/1.2.0-foss-2016b', 'ClustalW2/2.1-foss-2016b', 'CryptoMiniSat/5.0.1-intel-2016b-Python-2.7.12', 'Cufflinks/2.2.1-foss-2016b', 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'intltool/0.51.0-intel-2016b-Perl-5.24.0', 'jemalloc/4.2.1-intel-2016b', 'kallisto/0.43.0-intel-2016b', 'khmer/1.4.1-foss-2016b-Python-2.7.12', 'libGLU/9.0.0-foss-2016b', 'libGLU/9.0.0-intel-2016b', 'libQGLViewer/2.6.3-intel-2016b', 'libcerf/1.5-intel-2016b', 'libdrm/2.4.70-foss-2016b', 'libdrm/2.4.70-intel-2016b', 'libffi/3.2.1-foss-2016b', 'libffi/3.2.1-foss-2017a', 'libffi/3.2.1-intel-2016b', 'libgd/2.2.3-intel-2016b', 'libgtextutils/0.7-foss-2016b', 'libidn/1.32-foss-2016b', 'libjpeg-turbo/1.4.2-foss-2016b', 'libjpeg-turbo/1.5.0-foss-2016b', 'libjpeg-turbo/1.5.0-intel-2016b', 'libjpeg-turbo/1.5.1-intel-2016b', 'libmatheval/1.1.11-intel-2016b', 'libpng/1.6.23-foss-2016b', 'libpng/1.6.23-intel-2016b', 'libpng/1.6.24-foss-2016b', 'libpng/1.6.24-intel-2016b', 'libpng/1.6.26-foss-2016b', 'libpng/1.6.26-intel-2016b', 'libreadline/6.3-foss-2016b', 'libreadline/6.3-intel-2016b', 'libreadline/7.0-foss-2017a', 'libsodium/1.0.11-foss-2016b', 'libsodium/1.0.11-intel-2016b', 'libtool/2.4.6-foss-2016b', 'libtool/2.4.6-foss-2017a', 'libtool/2.4.6-intel-2016b', 'libunistring/0.9.6-intel-2016b', 'libunwind/1.1-intel-2016b', 'libxc/2.2.3-intel-2016b', 'libxc/3.0.0-intel-2016b', 'libxml2/2.9.4-foss-2016b', 'libxml2/2.9.4-foss-2016b-Python-2.7.12', 'libxml2/2.9.4-intel-2016b', 'libxml2/2.9.4-intel-2016b-Python-2.7.12', 'libxslt/1.1.29-intel-2016b', 'libxsmm/1.4.4-intel-2016b', 'libyaml/0.1.6-intel-2016b', 'lxml/3.6.4-intel-2016b-Python-2.7.12', 'matplotlib/1.5.1-intel-2016b-Python-2.7.12', 'matplotlib/1.5.1-intel-2016b-Python-3.5.2', 'matplotlib/1.5.2-intel-2016b-Python-2.7.12', 'matplotlib/1.5.2-intel-2016b-Python-3.5.2', 'matplotlib/1.5.3-foss-2016b-Python-2.7.12', 'matplotlib/1.5.3-intel-2016b-Python-2.7.12', 'matplotlib/1.5.3-intel-2016b-Python-3.5.2', 'minieigen/0.5.3-intel-2016b-Python-2.7.12', 'mpi4py/1.3.1-intel-2016b-Python-2.7.12-timed-pingpong', 'mpi4py/2.0.0-intel-2016b-Python-2.7.12', 'mympingpong/0.7.1-intel-2016b-Python-2.7.12', 'mypy/0.4.5-intel-2016b', 'ncbi-vdb/2.5.8-1-foss-2016b', 'ncbi-vdb/2.7.0-foss-2016b', 'ncurses/6.0', 'ncurses/6.0-foss-2016b', 'ncurses/6.0-foss-2017a', 'ncurses/6.0-intel-2016b', 'ncview/2.1.7-intel-2016b', 'netCDF-C++4/4.3.0-intel-2016b', 'netCDF-Fortran/4.4.4-foss-2016b', 'netCDF-Fortran/4.4.4-intel-2016b', 'netCDF/4.4.1-foss-2016b', 'netCDF/4.4.1-intel-2016b', 'netCDF/4.4.1.1-foss-2016b', 'nettle/3.2-foss-2016b', 'nettle/3.2-intel-2016b', 'nose-parameterized/0.5.0-intel-2016b-Python-3.5.2', 'numactl/2.0.11-GCC-5.4.0-2.26', 'numactl/2.0.11-intel-2016b', 'numexpr/2.6.1-intel-2016b-Python-2.7.12', 'numexpr/2.6.1-intel-2016b-Python-3.5.2', 'numpy/1.9.2-intel-2016b-Python-2.7.12', 'pandas/0.18.1-intel-2016b-Python-2.7.12', 'pandas/0.18.1-intel-2016b-Python-3.5.2', 'pandas/0.19.0-foss-2016b-Python-2.7.12', 'pandas/0.19.0-foss-2016b-Python-3.5.2', 'pandas/0.19.0-intel-2016b-Python-2.7.12', 'pandas/0.19.0-intel-2016b-Python-3.5.2', 'pandas/0.19.1-intel-2016b-Python-2.7.12', 'pandas/0.19.1-intel-2016b-Python-3.5.2', 'path.py/8.2.1-intel-2016b-Python-2.7.12', 'path.py/8.2.1-intel-2016b-Python-3.5.2', 'pbs_python/4.6.0-intel-2016b-Python-2.7.12', 'pip/8.1.2-intel-2016b-Python-2.7.12', 'pixman/0.34.0-intel-2016b', 'pkg-config/0.29.1-foss-2016b', 'pkg-config/0.29.1-intel-2016b', 'pkgconfig/1.1.0-foss-2016b-Python-2.7.12', 'pkgconfig/1.1.0-foss-2016b-Python-3.5.2', 'pkgconfig/1.1.0-intel-2016b-Python-2.7.12', 'pkgconfig/1.1.0-intel-2016b-Python-3.5.2', 'prokka/1.11-foss-2016b-BioPerl-1.7.0', 'prompt-toolkit/1.0.6-intel-2016b-Python-2.7.12', 'prompt-toolkit/1.0.6-intel-2016b-Python-3.5.2', 'pymatgen/4.1.1-intel-2016b-Python-2.7.12', 'pymatgen/4.3.2-intel-2016b-Python-2.7.12', 'qrupdate/1.1.2-intel-2016b', 'requests/2.11.1-intel-2016b-Python-2.7.12', 'requests/2.11.1-intel-2016b-Python-3.5.2', 'scikit-image/0.12.3-intel-2016b-Python-2.7.12', 'scikit-image/0.12.3-intel-2016b-Python-3.5.2', 'scikit-learn/0.17.1-intel-2016b-Python-2.7.12', 'scikit-learn/0.18-intel-2016b-Python-2.7.12', 'scikit-learn/0.18-intel-2016b-Python-3.5.2', 'scipy/0.16.0-intel-2016b-Python-2.7.12', 'seqtk/1.2-foss-2016b', 'setuptools/1.4.2', 'spglib-python/1.9.4.2-intel-2016b-Python-2.7.12', 'spglib-python/1.9.5-intel-2016b-Python-2.7.12', 'tabix/0.2.6-intel-2016b', 'taco/0.5.1-intel-2016b-Python-2.7.12', 'testpath/0.3-intel-2016b-Python-2.7.12', 'testpath/0.3-intel-2016b-Python-3.5.2', 'util-linux/2.28.1-intel-2016b', 'util-linux/2.29-foss-2016b', 'util-linux/2.29-intel-2016b', 'vsc-base/2.5.1-intel-2016b-Python-2.7.12', 'vsc-install/0.10.11-intel-2016b-Python-2.7.12', 'vsc-mympirun/3.4.3-intel-2016b-Python-2.7.12', 'wcwidth/0.1.7-intel-2016b-Python-2.7.12', 'wcwidth/0.1.7-intel-2016b-Python-3.5.2', 'wget/1.17.1-foss-2016b', 'worker/1.6.6-intel-2016b', 'worker/1.6.7-intel-2016b', 'wxPython/3.0.2.0-intel-2016b-Python-2.7.12', 'x264/20160614-intel-2016b', 'xprop/1.2.2-foss-2016b', 'xprop/1.2.2-intel-2016b', 'zlib/1.2.10', 'zlib/1.2.10-GCCcore-6.3.0', 'zlib/1.2.8', 'zlib/1.2.8-GCCcore-5.4.0', 'zlib/1.2.8-GCCcore-6.3.0', 'zlib/1.2.8-foss-2016b', 'zlib/1.2.8-intel-2016b'] | |
== 2017-01-04 17:13:59,020 easyconfig.py:608 DEBUG Dependencies BEFORE filtering: [] | |
== 2017-01-04 17:13:59,021 easyblock.py:2274 INFO Running method make_builddir part of step ready | |
== 2017-01-04 17:13:59,021 easyblock.py:763 DEBUG Creating the build directory /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a (cleanup: True) | |
== 2017-01-04 17:13:59,021 easyblock.py:817 INFO Found old directory /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a | |
== 2017-01-04 17:13:59,088 filetools.py:1072 INFO Path /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a successfully removed. | |
== 2017-01-04 17:13:59,088 easyblock.py:824 INFO Removed old directory /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a | |
== 2017-01-04 17:13:59,089 filetools.py:967 INFO Creating directory /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a (parents: True, set_gid: False, sticky: False) | |
== 2017-01-04 17:13:59,089 easyblock.py:2274 INFO Running method env_reset_changes part of step ready | |
== 2017-01-04 17:13:59,089 easyblock.py:2274 INFO Running method handle_iterate_opts part of step ready | |
== 2017-01-04 17:13:59,089 easyblock.py:1347 DEBUG Found list for configopts: ['--enable-threads --enable-openmp --with-pic --enable-single --enable-sse2 --enable-mpi', '--enable-threads --enable-openmp --with-pic --enable-long-double --enable-mpi', '--enable-threads --enable-openmp --with-pic --enable-quad-precision', '--enable-threads --enable-openmp --with-pic --enable-sse2 --enable-mpi'] | |
== 2017-01-04 17:13:59,089 easyblock.py:1350 INFO Current iteration index: 0 | |
== 2017-01-04 17:13:59,089 easyblock.py:1358 DEBUG Next value for configopts: --enable-threads --enable-openmp --with-pic --enable-single --enable-sse2 --enable-mpi | |
== 2017-01-04 17:13:59,089 easyblock.py:2263 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
== 2017-01-04 17:13:59,089 build_log.py:216 INFO unpacking... | |
== 2017-01-04 17:13:59,090 easyblock.py:2271 INFO Starting source step | |
== 2017-01-04 17:13:59,090 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:59,090 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:59,090 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:59,090 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:59,090 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:59,090 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:59,090 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:59,091 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:59,091 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:59,091 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:59,091 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:59,091 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:59,091 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:59,091 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:59,091 easyblock.py:2274 INFO Running method checksum_step part of step source | |
== 2017-01-04 17:13:59,092 easyblock.py:1529 INFO Checksum verification for /user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz using None passed. | |
== 2017-01-04 17:13:59,092 easyblock.py:2274 INFO Running method extract_step part of step source | |
== 2017-01-04 17:13:59,092 easyblock.py:1536 INFO Unpacking source fftw-3.3.5.tar.gz | |
== 2017-01-04 17:13:59,092 filetools.py:995 DEBUG Not creating existing path /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a | |
== 2017-01-04 17:13:59,092 filetools.py:201 DEBUG Unpacking /user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz in directory /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a. | |
== 2017-01-04 17:13:59,092 run.py:137 DEBUG run_cmd: running cmd tar xzf /user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz (in /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a) | |
== 2017-01-04 17:13:59,237 run.py:433 DEBUG cmd "tar xzf /user/data/gent/vsc400/vsc40023/EasyBuild/sources/f/FFTW/fftw-3.3.5.tar.gz" exited with exitcode 0 and output: | |
== 2017-01-04 17:13:59,238 run.py:477 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2017-01-04 17:13:59,238 filetools.py:595 DEBUG Last dir list ['dft', 'config.sub', 'mpi', 'threads', 'support', 'bootstrap.sh', 'AUTHORS', 'api', 'README', 'CONVENTIONS', 'genfft', 'depcomp', 'TODO', 'configure.ac', 'configure', 'COPYING', 'doc', 'tools', 'ChangeLog', 'config.guess', 'simd-support', 'Makefile.am', 'COPYRIGHT', 'rdft', 'config.h.in', 'install-sh', 'kernel', 'ltmain.sh', 'INSTALL', 'aclocal.m4', 'reodft', 'libbench2', 'fftw.pc.in', 'missing', 'compile', 'm4', 'NEWS', 'Makefile.in', 'tests'] | |
== 2017-01-04 17:13:59,238 filetools.py:596 DEBUG Possible new dir /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a/fftw-3.3.5 found | |
== 2017-01-04 17:13:59,238 easyblock.py:2263 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
== 2017-01-04 17:13:59,238 build_log.py:216 INFO patching... | |
== 2017-01-04 17:13:59,238 easyblock.py:2271 INFO Starting patch step | |
== 2017-01-04 17:13:59,239 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:59,239 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:59,239 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:59,239 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:59,239 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:59,239 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:59,239 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:59,239 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:59,240 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:59,240 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:59,240 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:59,240 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:59,240 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:59,240 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:59,240 easyblock.py:2274 INFO Running method patch_step part of step patch | |
== 2017-01-04 17:13:59,240 easyblock.py:2263 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
== 2017-01-04 17:13:59,241 build_log.py:216 INFO preparing... | |
== 2017-01-04 17:13:59,241 easyblock.py:2271 INFO Starting prepare step | |
== 2017-01-04 17:13:59,241 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:59,241 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:59,241 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:59,241 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:59,241 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:59,241 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:59,242 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:59,242 templates.py:151 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x135fa10> | |
== 2017-01-04 17:13:59,242 templates.py:175 DEBUG version found in easyconfig is 3.3.5 | |
== 2017-01-04 17:13:59,242 templates.py:219 DEBUG name: github_account, config: None | |
== 2017-01-04 17:13:59,242 templates.py:219 DEBUG name: name, config: FFTW | |
== 2017-01-04 17:13:59,242 templates.py:219 DEBUG name: version, config: 3.3.5 | |
== 2017-01-04 17:13:59,242 templates.py:219 DEBUG name: versionsuffix, config: | |
== 2017-01-04 17:13:59,242 templates.py:219 DEBUG name: versionprefix, config: | |
== 2017-01-04 17:13:59,242 easyblock.py:2274 INFO Running method prepare_step part of step prepare | |
== 2017-01-04 17:13:59,243 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2017-01-04 17:13:59,243 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2017-01-04 17:13:59,243 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2017-01-04 17:13:59,243 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show gompi/2017a' from /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a/fftw-3.3.5 | |
== 2017-01-04 17:13:59,375 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show gompi/2017a': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
; stderr: ---------------------------------------------------------------------------- | |
/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.lua: | |
---------------------------------------------------------------------------- | |
help([[GNU Compiler Collection (GCC) based compiler toolchain, | |
including OpenMPI for MPI support. - Homepage: (none)]]) | |
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, | |
including OpenMPI for MPI support. - Homepage: (none)") | |
conflict("gompi") | |
load("GCC/6.3.0-2.27") | |
load("OpenMPI/2.0.1-GCC-6.3.0-2.27") | |
setenv("EBROOTGOMPI","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/gompi/2017a") | |
setenv("EBVERSIONGOMPI","2017a") | |
setenv("EBDEVELGOMPI","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/gompi/2017a/easybuild/gompi-2017a-easybuild-devel") | |
== 2017-01-04 17:13:59,375 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python show gompi/2017a' ran fine | |
== 2017-01-04 17:13:59,375 modules.py:539 DEBUG Cached result for 'module show gompi/2017a' with key '('MODULEPATH=/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'gompi/2017a')': os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "LH0sfSxbInNob3J0Il09ImNsdXN0ZXIiLFsic3RhdHVzIl09ImFjdGl2ZSIsfSx9LG1wYXRoQT17Ii91c2VyL2hvbWUvZ2VudC92c2M0MDAvdnNjNDAwMjMvZWJfcGhhbnB5c2NyYXRjaC9DTzcvaGFzd2VsbC1pYi9tb2R1bGVzL2FsbCIsIi9ldGMvbW9kdWxlZmlsZXMvdnNjIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9ldGMvbW9kdWxlZmlsZXMvdnNjIixbInZlcnNpb24iXT0yLH0="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
---------------------------------------------------------------------------- | |
/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.lua: | |
---------------------------------------------------------------------------- | |
help([[GNU Compiler Collection (GCC) based compiler toolchain, | |
including OpenMPI for MPI support. - Homepage: (none)]]) | |
whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, | |
including OpenMPI for MPI support. - Homepage: (none)") | |
conflict("gompi") | |
load("GCC/6.3.0-2.27") | |
load("OpenMPI/2.0.1-GCC-6.3.0-2.27") | |
setenv("EBROOTGOMPI","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/gompi/2017a") | |
setenv("EBVERSIONGOMPI","2017a") | |
setenv("EBDEVELGOMPI","/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/software/gompi/2017a/easybuild/gompi-2017a-easybuild-devel") | |
== 2017-01-04 17:13:59,376 toolchain.py:561 DEBUG Loading toolchain module and dependencies... | |
== 2017-01-04 17:13:59,376 toolchain.py:494 DEBUG Loading module for toolchain: gompi/2017a | |
== 2017-01-04 17:13:59,376 modules.py:634 DEBUG Current MODULEPATH: /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc | |
== 2017-01-04 17:13:59,376 modules.py:641 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
== 2017-01-04 17:13:59,376 modules.py:641 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
== 2017-01-04 17:13:59,376 modules.py:645 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python load gompi/2017a' from /tmp/vsc40023/easybuild_build/FFTW/3.3.5/gompi-2017a/fftw-3.3.5 | |
== 2017-01-04 17:14:04,741 modules.py:651 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python load gompi/2017a': stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
false | |
; stderr: Lmod has detected the following error: The following module(s) are unknown: | |
"GCC/6.3.0-2.27" "numactl/2.0.11-GCC-6.3.0-2.27" | |
Please check the spelling or version number. Also try "module spider ..." | |
Executing this command requires loading "GCC/6.3.0-2.27" which failed while | |
processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while | |
processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while | |
processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua | |
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.luaExecuting this command requires loading "numactl/2.0.11-GCC-6.3.0-2.27" which | |
failed while processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua | |
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.lua | |
If you don't understand the warning or error, contact the helpdesk at hpc@ugent.be | |
== 2017-01-04 17:14:04,741 modules.py:968 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load gompi/2017a' ran fine | |
== 2017-01-04 17:14:04,745 build_log.py:147 ERROR EasyBuild crashed with an error (at ?:124 in __init__): Changing environment as dictated by module failed: name 'false' is not defined (stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
false | |
, stderr: Lmod has detected the following error: The following module(s) are unknown: | |
"GCC/6.3.0-2.27" "numactl/2.0.11-GCC-6.3.0-2.27" | |
Please check the spelling or version number. Also try "module spider ..." | |
Executing this command requires loading "GCC/6.3.0-2.27" which failed while | |
processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while | |
processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.luaExecuting this command requires loading "GCC/6.3.0-2.27" which failed while | |
processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua | |
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.luaExecuting this command requires loading "numactl/2.0.11-GCC-6.3.0-2.27" which | |
failed while processing the following module(s): | |
Module fullname Module Filename | |
--------------- --------------- | |
hwloc/1.11.5-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/hwloc/1.11.5-GCC-6.3.0-2.27.lua | |
OpenMPI/2.0.1-GCC-6.3.0-2.27 /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/OpenMPI/2.0.1-GCC-6.3.0-2.27.lua | |
gompi/2017a /user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all/gompi/2017a.lua | |
If you don't understand the warning or error, contact the helpdesk at hpc@ugent.be | |
) (at easybuild/tools/modules.py:674 in run_module) | |
== 2017-01-04 17:14:04,745 easyblock.py:2503 WARNING build failed (first 300 chars): Changing environment as dictated by module failed: name 'false' is not defined (stdout: os.environ["LMOD_DEFAULT_MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscratch/CO7/haswell-ib/modules/all:/etc/modulefiles/vsc"; | |
os.environ["MODULEPATH"] = "/user/home/gent/vsc400/vsc40023/eb_phanpyscr | |
== 2017-01-04 17:14:04,745 easyblock.py:276 INFO Closing log for application name FFTW version 3.3.5 |
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