Created
November 14, 2018 15:00
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(partial) EasyBuild log for failed build of /work/smoors/hpc/easybuild-dev/easybuild-easyconfigs/easybuild/easyconfigs/p/patchelf/patchelf-0.9-GCCcore-6.4.0.eb (PR #7159)
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| == 2018-11-14 15:58:46,119 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,120 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:46,120 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,120 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,120 easyblock.py:2618 INFO Running method check_readiness_step part of step ready | |
| == 2018-11-14 15:58:46,120 easyblock.py:1530 DEBUG Desired parallelism specified via 'parallel' build option: None | |
| == 2018-11-14 15:58:46,121 affinity.py:211 DEBUG sched_getaffinity for pid 282828 returned cpuset 0-39 | |
| == 2018-11-14 15:58:46,121 run.py:84 DEBUG Using cached value for command 'ulimit -u': ('4096\n', 0) | |
| == 2018-11-14 15:58:46,121 easyblock.py:1533 INFO Setting parallelism: 40 | |
| == 2018-11-14 15:58:46,121 modules.py:712 DEBUG Current MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:46,121 modules.py:719 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,121 modules.py:719 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,121 modules.py:723 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /tmp/smoors/eb-dVt956/tmpDE6O6O/easybuilders | |
| == 2018-11-14 15:58:46,164 modules.py:729 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "Ny9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsOjovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvdmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "3"; | |
| ; stderr: No modules loaded | |
| == 2018-11-14 15:58:46,164 modules.py:1201 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
| == 2018-11-14 15:58:46,164 modules.py:766 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2018-11-14 15:58:46,164 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2018-11-14 15:58:46,164 modules.py:766 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2018-11-14 15:58:46,165 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2018-11-14 15:58:46,165 easyconfig.py:690 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'binutils/2.28-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'binutils', 'dummy': False, 'short_mod_name': 'binutils/2.28-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '2.28', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}] | |
| == 2018-11-14 15:58:46,165 toolchain.py:390 DEBUG add_dependencies: adding toolchain dependencies [{'external_module_metadata': {}, 'full_mod_name': 'binutils/2.28-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'binutils', 'dummy': False, 'short_mod_name': 'binutils/2.28-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '2.28', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}] | |
| == 2018-11-14 15:58:46,165 toolchain.py:400 DEBUG add_dependencies: MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:46,165 modules.py:712 DEBUG Current MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:46,165 modules.py:719 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,165 modules.py:719 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,165 modules.py:723 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse --show-hidden avail binutils/2.28-GCCcore-6.4.0' from /tmp/smoors/eb-dVt956/tmpDE6O6O/easybuilders | |
| == 2018-11-14 15:58:46,539 modules.py:729 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse --show-hidden avail binutils/2.28-GCCcore-6.4.0': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "Ny9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsOjovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvdmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "3"; | |
| ; stderr: /apps/brussel/CO7/skylake/modules/2017b/all: | |
| binutils/2.28-GCCcore-6.4.0 | |
| == 2018-11-14 15:58:46,539 modules.py:1201 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse --show-hidden avail binutils/2.28-GCCcore-6.4.0' ran fine | |
| == 2018-11-14 15:58:46,540 modules.py:766 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2018-11-14 15:58:46,540 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2018-11-14 15:58:46,540 modules.py:766 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2018-11-14 15:58:46,540 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2018-11-14 15:58:46,540 modules.py:458 DEBUG 'module available binutils/2.28-GCCcore-6.4.0' gave 1 answers: ['binutils/2.28-GCCcore-6.4.0'] | |
| == 2018-11-14 15:58:46,540 modules.py:559 DEBUG Result for existence check of binutils/2.28-GCCcore-6.4.0 module: True | |
| == 2018-11-14 15:58:46,540 easyconfig.py:690 DEBUG Dependencies BEFORE filtering: [{'external_module_metadata': {}, 'full_mod_name': 'binutils/2.28-GCCcore-6.4.0', 'toolchain': {'version': '6.4.0', 'name': 'GCCcore'}, 'name': 'binutils', 'dummy': False, 'short_mod_name': 'binutils/2.28-GCCcore-6.4.0', 'external_module': False, 'versionsuffix': '', 'version': '2.28', 'toolchain_inherited': True, 'hidden': False, 'build_only': True}] | |
| == 2018-11-14 15:58:46,541 easyblock.py:2618 INFO Running method make_builddir part of step ready | |
| == 2018-11-14 15:58:46,541 easyblock.py:840 DEBUG Creating the build directory /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0 (cleanup: True) | |
| == 2018-11-14 15:58:46,541 filetools.py:1186 INFO Creating directory /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0 (parents: True, set_gid: False, sticky: False) | |
| == 2018-11-14 15:58:46,541 easyblock.py:2618 INFO Running method env_reset_changes part of step ready | |
| == 2018-11-14 15:58:46,541 easyblock.py:2618 INFO Running method handle_iterate_opts part of step ready | |
| == 2018-11-14 15:58:46,541 easyblock.py:2604 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2018-11-14 15:58:46,541 build_log.py:236 INFO unpacking... | |
| == 2018-11-14 15:58:46,541 easyblock.py:2612 INFO Starting source step | |
| == 2018-11-14 15:58:46,541 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:46,541 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,542 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:46,542 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,542 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,542 easyblock.py:2618 INFO Running method checksum_step part of step source | |
| == 2018-11-14 15:58:46,543 filetools.py:714 DEBUG Using blocksize 16777216 for calculating the checksum | |
| == 2018-11-14 15:58:46,543 filetools.py:762 DEBUG Computed sha256 checksum for /work/smoors/sources/p/patchelf/0.9.tar.gz: cf0693e794229e19edcf2299427b5a352e0f4d4f06f9d3856e30ddb0344d5ce8 (correct checksum: cf0693e794229e19edcf2299427b5a352e0f4d4f06f9d3856e30ddb0344d5ce8) | |
| == 2018-11-14 15:58:46,543 easyblock.py:1695 INFO Checksum verification for /work/smoors/sources/p/patchelf/0.9.tar.gz using cf0693e794229e19edcf2299427b5a352e0f4d4f06f9d3856e30ddb0344d5ce8 passed. | |
| == 2018-11-14 15:58:46,543 easyblock.py:2618 INFO Running method extract_step part of step source | |
| == 2018-11-14 15:58:46,543 easyblock.py:1763 INFO Unpacking source 0.9.tar.gz | |
| == 2018-11-14 15:58:46,543 filetools.py:1214 DEBUG Not creating existing path /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0 | |
| == 2018-11-14 15:58:46,543 filetools.py:349 DEBUG Unpacking /work/smoors/sources/p/patchelf/0.9.tar.gz in directory /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0. | |
| == 2018-11-14 15:58:46,543 run.py:173 DEBUG run_cmd: running cmd tar xzf /work/smoors/sources/p/patchelf/0.9.tar.gz (in /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0) | |
| == 2018-11-14 15:58:46,543 run.py:192 INFO running cmd: tar xzf /work/smoors/sources/p/patchelf/0.9.tar.gz | |
| == 2018-11-14 15:58:46,578 run.py:508 DEBUG cmd "tar xzf /work/smoors/sources/p/patchelf/0.9.tar.gz" exited with exit code 0 and output: | |
| == 2018-11-14 15:58:46,579 run.py:542 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
| == 2018-11-14 15:58:46,579 filetools.py:816 DEBUG Last dir list ['tests', 'patchelf.1', 'patchelf.spec.in', 'version', 'Makefile.am', 'BUGS', 'COPYING', 'src', 'release.nix', 'configure.ac', 'bootstrap.sh', 'README'] | |
| == 2018-11-14 15:58:46,579 filetools.py:817 DEBUG Possible new dir /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9 found | |
| == 2018-11-14 15:58:46,579 easyblock.py:2604 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2018-11-14 15:58:46,579 build_log.py:236 INFO patching... | |
| == 2018-11-14 15:58:46,579 easyblock.py:2612 INFO Starting patch step | |
| == 2018-11-14 15:58:46,579 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:46,579 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:46,579 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,579 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,579 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,580 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:46,580 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,580 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,580 easyblock.py:2618 INFO Running method patch_step part of step patch | |
| == 2018-11-14 15:58:46,580 easyblock.py:2604 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2018-11-14 15:58:46,580 build_log.py:236 INFO preparing... | |
| == 2018-11-14 15:58:46,580 easyblock.py:2612 INFO Starting prepare step | |
| == 2018-11-14 15:58:46,580 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:46,581 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,581 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:46,581 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:46,581 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:46,581 easyblock.py:2618 INFO Running method prepare_step part of step prepare | |
| == 2018-11-14 15:58:46,582 modules.py:712 DEBUG Current MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:46,582 modules.py:719 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,582 modules.py:719 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,582 modules.py:723 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python show GCCcore/6.4.0' from /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9 | |
| == 2018-11-14 15:58:46,897 modules.py:729 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show GCCcore/6.4.0': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii93b3JrL3Ntb29ycy9lYnRlc3QvcGV0c2MvbW9kdWxlcy9hbGwiLCIvYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxOGIvYWxsIiwiL2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMThhL2FsbCIsIi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE3Yi9hbGwiLCIvYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsIiwiL2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZiL2FsbCIsIi9h"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "Ny9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsOjovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvdmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "3"; | |
| ; stderr: ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0: | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] ") | |
| whatis("Homepage: http://gcc.gnu.org/ ") | |
| conflict("GCCcore") | |
| prepend_path("CPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("MANPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man") | |
| prepend_path("PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin") | |
| setenv("EBROOTGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0") | |
| setenv("EBVERSIONGCCCORE","6.4.0") | |
| setenv("EBDEVELGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/easybuild/GCCcore-6.4.0-easybuild-devel") | |
| help([[ | |
| Description | |
| =========== | |
| The GNU Compiler Collection includes front ends for C, C++, Objective-C, | |
| Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, | |
| libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] | |
| More information | |
| ================ | |
| - Homepage: http://gcc.gnu.org/ | |
| ]]) | |
| == 2018-11-14 15:58:46,898 modules.py:625 DEBUG Cached result for 'module show GCCcore/6.4.0' with key '('MODULEPATH=/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module', 'lmod', 'GCCcore/6.4.0')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "cHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2YS9hbGwiLCIvYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsIiwiIiwiL2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL3Zhc3AvbW9kdWxlIiwiL2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGwiLCIvYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvYWRmL21vZHVsZSIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxOGIvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE4YS9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTdiL2FsbDovYXBwcy9icnVzc2VsL0NP"; | |
| os.environ["_ModuleTable003_"] = "Ny9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsOjovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvdmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "3"; | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0: | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] ") | |
| whatis("Homepage: http://gcc.gnu.org/ ") | |
| conflict("GCCcore") | |
| prepend_path("CPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("MANPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man") | |
| prepend_path("PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin") | |
| setenv("EBROOTGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0") | |
| setenv("EBVERSIONGCCCORE","6.4.0") | |
| setenv("EBDEVELGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/easybuild/GCCcore-6.4.0-easybuild-devel") | |
| help([[ | |
| Description | |
| =========== | |
| The GNU Compiler Collection includes front ends for C, C++, Objective-C, | |
| Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, | |
| libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] | |
| More information | |
| ================ | |
| - Homepage: http://gcc.gnu.org/ | |
| ]]) | |
| == 2018-11-14 15:58:46,898 modules.py:559 DEBUG Result for existence check of GCCcore/6.4.0 module: True | |
| == 2018-11-14 15:58:46,898 toolchain.py:594 DEBUG Loading toolchain module and dependencies... | |
| == 2018-11-14 15:58:46,898 toolchain.py:509 DEBUG Loading module for toolchain: GCCcore/6.4.0 | |
| == 2018-11-14 15:58:46,898 modules.py:712 DEBUG Current MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:46,898 modules.py:719 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,898 modules.py:719 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,898 modules.py:723 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9 | |
| == 2018-11-14 15:58:46,939 modules.py:729 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "Ny9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsOjovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvdmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "3"; | |
| ; stderr: No modules loaded | |
| == 2018-11-14 15:58:46,939 modules.py:1201 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
| == 2018-11-14 15:58:46,939 modules.py:766 DEBUG Correcting paths in $LD_LIBRARY_PATH from [''] to [] | |
| == 2018-11-14 15:58:46,939 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2018-11-14 15:58:46,939 modules.py:766 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2018-11-14 15:58:46,939 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2018-11-14 15:58:46,939 modules.py:712 DEBUG Current MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:46,940 modules.py:719 DEBUG Changing LD_LIBRARY_PATH from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,940 modules.py:719 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2018-11-14 15:58:46,940 modules.py:723 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/6.4.0' from /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9 | |
| == 2018-11-14 15:58:47,266 modules.py:729 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/6.4.0': stdout: os.environ["__LMOD_REF_COUNT_CPATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include:1"; | |
| os.environ["CPATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include"; | |
| os.environ["EBDEVELGCCCORE"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/easybuild/GCCcore-6.4.0-easybuild-devel"; | |
| os.environ["EBROOTGCCCORE"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0"; | |
| os.environ["EBVERSIONGCCCORE"] = "6.4.0"; | |
| os.environ["__LMOD_REF_COUNT_LD_LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib:1"; | |
| os.environ["LD_LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib"; | |
| os.environ["__LMOD_REF_COUNT_LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib:1"; | |
| os.environ["LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib"; | |
| os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "GCCcore/6.4.0:1"; | |
| os.environ["LOADEDMODULES"] = "GCCcore/6.4.0"; | |
| os.environ["__LMOD_REF_COUNT_MANPATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man:1\;/usr/local/share/man:1\;/usr/share/man/overrides:1\;/usr/share/man:1\;/opt/ibutils/share/man:1\;/usr/man:1\;/cm/local/apps/environment-modules/current/share/man:1"; | |
| os.environ["MANPATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man:/usr/local/share/man:/usr/share/man/overrides:/usr/share/man:/opt/ibutils/share/man:/usr/man:/cm/local/apps/environment-modules/current/share/man"; | |
| os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["__LMOD_REF_COUNT_PATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin:1\;/work/smoors/hpc/easybuild-dev/easybuild-framework:1\;/cm/shared/apps/mam/current/bin:1\;/usr/local/bin:2\;/usr/bin:1\;/usr/local/sbin:1\;/usr/sbin:1\;/opt/ibutils/bin:1\;/u/smoors/progs:1\;/u/smoors/.local/bin:1\;/u/smoors/software/openbabel-2.4.1/bin:1"; | |
| os.environ["PATH"] = "/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin:/work/smoors/hpc/easybuild-dev/easybuild-framework:/cm/shared/apps/mam/current/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/u/smoors/progs:/u/smoors/.local/bin:/u/smoors/software/openbabel-2.4.1/bin"; | |
| os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0:1"; | |
| os.environ["_LMFILES_"] = "/apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "dmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "4"; | |
| ; stderr: | |
| == 2018-11-14 15:58:47,266 modules.py:1201 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load GCCcore/6.4.0' ran fine | |
| == 2018-11-14 15:58:47,266 modules.py:766 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib'] to ['/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib'] | |
| == 2018-11-14 15:58:47,267 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib (previous value: '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib') | |
| == 2018-11-14 15:58:47,267 modules.py:766 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2018-11-14 15:58:47,267 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2018-11-14 15:58:47,267 toolchain.py:539 DEBUG Loading modules for dependencies: ['binutils/2.28-GCCcore-6.4.0'] | |
| == 2018-11-14 15:58:47,267 modules.py:712 DEBUG Current MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:47,267 modules.py:719 DEBUG Changing LD_LIBRARY_PATH from '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib' to '' in environment for module command | |
| == 2018-11-14 15:58:47,267 modules.py:719 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2018-11-14 15:58:47,267 modules.py:723 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9 | |
| == 2018-11-14 15:58:47,308 modules.py:729 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "dmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "4"; | |
| ; stderr: GCCcore/6.4.0 | |
| == 2018-11-14 15:58:47,308 modules.py:1201 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
| == 2018-11-14 15:58:47,309 modules.py:766 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib'] to ['/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib'] | |
| == 2018-11-14 15:58:47,309 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib (previous value: '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib') | |
| == 2018-11-14 15:58:47,309 modules.py:766 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2018-11-14 15:58:47,309 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2018-11-14 15:58:47,309 modules.py:712 DEBUG Current MODULEPATH: /work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module | |
| == 2018-11-14 15:58:47,309 modules.py:719 DEBUG Changing LD_LIBRARY_PATH from '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib' to '' in environment for module command | |
| == 2018-11-14 15:58:47,309 modules.py:719 DEBUG Changing LD_PRELOAD from '' to '' in environment for module command | |
| == 2018-11-14 15:58:47,309 modules.py:723 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python load binutils/2.28-GCCcore-6.4.0' from /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9 | |
| == 2018-11-14 15:58:47,635 modules.py:729 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python load binutils/2.28-GCCcore-6.4.0': stdout: os.environ["__LMOD_REF_COUNT_CPATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/include:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include:1"; | |
| os.environ["CPATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/include:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include"; | |
| os.environ["EBDEVELBINUTILS"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/easybuild/binutils-2.28-GCCcore-6.4.0-easybuild-devel"; | |
| os.environ["EBROOTBINUTILS"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0"; | |
| os.environ["EBVERSIONBINUTILS"] = "2.28"; | |
| os.environ["__LMOD_REF_COUNT_LD_LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib:1"; | |
| os.environ["LD_LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib"; | |
| os.environ["__LMOD_REF_COUNT_LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib:1"; | |
| os.environ["LIBRARY_PATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib"; | |
| os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "GCCcore/6.4.0:1\;binutils/2.28-GCCcore-6.4.0:1"; | |
| os.environ["LOADEDMODULES"] = "GCCcore/6.4.0:binutils/2.28-GCCcore-6.4.0"; | |
| os.environ["__LMOD_REF_COUNT_MANPATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/share/man:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man:1\;/usr/local/share/man:1\;/usr/share/man/overrides:1\;/usr/share/man:1\;/opt/ibutils/share/man:1\;/usr/man:1\;/cm/local/apps/environment-modules/current/share/man:1"; | |
| os.environ["MANPATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/share/man:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man:/usr/local/share/man:/usr/share/man/overrides:/usr/share/man:/opt/ibutils/share/man:/usr/man:/cm/local/apps/environment-modules/current/share/man"; | |
| os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["__LMOD_REF_COUNT_PATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/bin:1\;/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin:1\;/work/smoors/hpc/easybuild-dev/easybuild-framework:1\;/cm/shared/apps/mam/current/bin:1\;/usr/local/bin:1\;/usr/bin:1\;/usr/local/sbin:1\;/usr/sbin:1\;/opt/ibutils/bin:1\;/u/smoors/progs:1\;/u/smoors/.local/bin:1\;/u/smoors/software/openbabel-2.4.1/bin:1"; | |
| os.environ["PATH"] = "/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/bin:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin:/work/smoors/hpc/easybuild-dev/easybuild-framework:/cm/shared/apps/mam/current/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin:/u/smoors/progs:/u/smoors/.local/bin:/u/smoors/software/openbabel-2.4.1/bin"; | |
| os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0:1\;/apps/brussel/CO7/skylake/modules/2017b/all/binutils/2.28-GCCcore-6.4.0:1"; | |
| os.environ["_LMFILES_"] = "/apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0:/apps/brussel/CO7/skylake/modules/2017b/all/binutils/2.28-GCCcore-6.4.0"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "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"; | |
| os.environ["_ModuleTable004_"] = "L2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE3Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTdhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNmIvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2YS9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTViL2FsbDo6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL3Zhc3AvbW9kdWxlOi9hcHBzL2JydXNzZWwvY29tbWVyY2lhbC9vcmNhL21vZHVsZXMvYWxsOi9hcHBzL2JydXNzZWwvY29tbWVyY2lhbC9hZGYvbW9kdWxlIix9"; | |
| os.environ["_ModuleTable_Sz_"] = "4"; | |
| ; stderr: | |
| == 2018-11-14 15:58:47,635 modules.py:1201 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load binutils/2.28-GCCcore-6.4.0' ran fine | |
| == 2018-11-14 15:58:47,636 modules.py:766 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib'] to ['/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64', '/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib'] | |
| == 2018-11-14 15:58:47,636 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64:/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib (previous value: '/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib') | |
| == 2018-11-14 15:58:47,636 modules.py:766 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2018-11-14 15:58:47,636 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2018-11-14 15:58:47,636 modules.py:621 DEBUG Found cached result for 'module show GCCcore/6.4.0' with key '('MODULEPATH=/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module', 'lmod', 'GCCcore/6.4.0')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "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"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "Ny9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsOjovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvdmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "3"; | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0: | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] ") | |
| whatis("Homepage: http://gcc.gnu.org/ ") | |
| conflict("GCCcore") | |
| prepend_path("CPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("MANPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man") | |
| prepend_path("PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin") | |
| setenv("EBROOTGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0") | |
| setenv("EBVERSIONGCCCORE","6.4.0") | |
| setenv("EBDEVELGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/easybuild/GCCcore-6.4.0-easybuild-devel") | |
| help([[ | |
| Description | |
| =========== | |
| The GNU Compiler Collection includes front ends for C, C++, Objective-C, | |
| Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, | |
| libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] | |
| More information | |
| ================ | |
| - Homepage: http://gcc.gnu.org/ | |
| ]]) | |
| == 2018-11-14 15:58:47,636 modules.py:559 DEBUG Result for existence check of GCCcore/6.4.0 module: True | |
| == 2018-11-14 15:58:47,636 modules.py:621 DEBUG Found cached result for 'module show GCCcore/6.4.0' with key '('MODULEPATH=/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module', 'lmod', 'GCCcore/6.4.0')': os.environ["__LMOD_REF_COUNT_MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:1\;/apps/brussel/CO7/skylake/modules/2018b/all:1\;/apps/brussel/CO7/skylake/modules/2018a/all:1\;/apps/brussel/CO7/skylake/modules/2017b/all:1\;/apps/brussel/CO7/skylake/modules/2017a/all:1\;/apps/brussel/CO7/skylake/modules/2016b/all:1\;/apps/brussel/CO7/skylake/modules/2016a/all:1\;/apps/brussel/CO7/skylake/modules/2015b/all:1\;/apps/brussel/commercial/vasp/module:1\;/apps/brussel/commercial/orca/modules/all:1\;/apps/brussel/commercial/adf/module:1"; | |
| os.environ["MODULEPATH"] = "/work/smoors/ebtest/petsc/modules/all:/apps/brussel/CO7/skylake/modules/2018b/all:/apps/brussel/CO7/skylake/modules/2018a/all:/apps/brussel/CO7/skylake/modules/2017b/all:/apps/brussel/CO7/skylake/modules/2017a/all:/apps/brussel/CO7/skylake/modules/2016b/all:/apps/brussel/CO7/skylake/modules/2016a/all:/apps/brussel/CO7/skylake/modules/2015b/all::/apps/brussel/commercial/vasp/module:/apps/brussel/commercial/orca/modules/all:/apps/brussel/commercial/adf/module"; | |
| os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXz17WyJNVHZlcnNpb24iXT0zLFsiY19yZWJ1aWxkVGltZSJdPWZhbHNlLFsiY19zaG9ydFRpbWUiXT1mYWxzZSxkZXB0aFQ9e30sZmFtaWx5PXt9LG1UPXt9LG1wYXRoQT17Ii93b3JrL3Ntb29ycy9lYnRlc3QvcGV0c2MvbW9kdWxlcy9hbGwiLCIvYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxOGIvYWxsIiwiL2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMThhL2FsbCIsIi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE3Yi9hbGwiLCIvYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsIiwiL2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZiL2FsbCIsIi9h"; | |
| os.environ["_ModuleTable002_"] = "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"; | |
| os.environ["_ModuleTable003_"] = "Ny9za3lsYWtlL21vZHVsZXMvMjAxN2EvYWxsOi9hcHBzL2JydXNzZWwvQ083L3NreWxha2UvbW9kdWxlcy8yMDE2Yi9hbGw6L2FwcHMvYnJ1c3NlbC9DTzcvc2t5bGFrZS9tb2R1bGVzLzIwMTZhL2FsbDovYXBwcy9icnVzc2VsL0NPNy9za3lsYWtlL21vZHVsZXMvMjAxNWIvYWxsOjovYXBwcy9icnVzc2VsL2NvbW1lcmNpYWwvdmFzcC9tb2R1bGU6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL29yY2EvbW9kdWxlcy9hbGw6L2FwcHMvYnJ1c3NlbC9jb21tZXJjaWFsL2FkZi9tb2R1bGUiLH0="; | |
| os.environ["_ModuleTable_Sz_"] = "3"; | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /apps/brussel/CO7/skylake/modules/2017b/all/GCCcore/6.4.0: | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| whatis("Description: The GNU Compiler Collection includes front ends for C, C++, Objective-C, Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] ") | |
| whatis("Homepage: http://gcc.gnu.org/ ") | |
| conflict("GCCcore") | |
| prepend_path("CPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/include") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("LD_LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib/gcc/x86_64-pc-linux-gnu/6.4.0") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib") | |
| prepend_path("LIBRARY_PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64") | |
| prepend_path("MANPATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/share/man") | |
| prepend_path("PATH","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/bin") | |
| setenv("EBROOTGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0") | |
| setenv("EBVERSIONGCCCORE","6.4.0") | |
| setenv("EBDEVELGCCCORE","/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/easybuild/GCCcore-6.4.0-easybuild-devel") | |
| help([[ | |
| Description | |
| =========== | |
| The GNU Compiler Collection includes front ends for C, C++, Objective-C, | |
| Fortran, Java, and Ada, as well as libraries for these languages (libstdc++, | |
| libgcj,...). \[NOTE: This module does not include Objective-C, Java or Ada\] | |
| More information | |
| ================ | |
| - Homepage: http://gcc.gnu.org/ | |
| ]]) | |
| == 2018-11-14 15:58:47,637 toolchain.py:614 DEBUG List of toolchain dependencies from toolchain module: [] | |
| == 2018-11-14 15:58:47,637 toolchain.py:432 DEBUG Toolchain definition for {'dummy': True, 'versionsuffix': '', 'version': '6.4.0', 'toolchain': {'version': 'dummy', 'name': 'dummy'}, 'name': 'GCCcore', 'full_mod_name': 'GCCcore/6.4.0', 'hidden': False, 'parsed': True, 'short_mod_name': 'GCCcore/6.4.0'}: {'COMPILER': ['GCCcore']} | |
| == 2018-11-14 15:58:47,637 toolchain.py:627 DEBUG List of toolchain elements from toolchain definition: set([]) | |
| == 2018-11-14 15:58:47,637 toolchain.py:630 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2018-11-14 15:58:47,638 options.py:90 WARNING option: option with name _opt_CC returns None | |
| == 2018-11-14 15:58:47,638 options.py:90 WARNING option: option with name _opt_CXX returns None | |
| == 2018-11-14 15:58:47,638 options.py:90 WARNING option: option with name _opt_F77 returns None | |
| == 2018-11-14 15:58:47,638 options.py:90 WARNING option: option with name _opt_F90 returns None | |
| == 2018-11-14 15:58:47,638 options.py:90 WARNING option: option with name _opt_FC returns None | |
| == 2018-11-14 15:58:47,639 compiler.py:334 INFO _set_optimal_architecture: using march=native as optarch for x86_64. | |
| == 2018-11-14 15:58:47,640 toolchain.py:706 DEBUG prepare: set additional variables onlymod=False | |
| == 2018-11-14 15:58:47,640 toolchain.py:294 DEBUG get_software_root software root /apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0 for binutils was found in environment | |
| == 2018-11-14 15:58:47,641 variables.py:201 WARNING flags_for_subdirs: directory /apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib64 was not found | |
| == 2018-11-14 15:58:47,641 toolchain.py:915 DEBUG _setenv_variables: setting environment variable CC to gcc | |
| == 2018-11-14 15:58:47,641 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2018-11-14 15:58:47,641 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2018-11-14 15:58:47,641 toolchain.py:915 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2018-11-14 15:58:47,641 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,641 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,642 toolchain.py:915 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/include | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable CPPFLAGS set to -I/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/include (previously undefined) | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/include (previously undefined) | |
| == 2018-11-14 15:58:47,642 toolchain.py:915 DEBUG _setenv_variables: setting environment variable CXX to g++ | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2018-11-14 15:58:47,642 toolchain.py:915 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,642 toolchain.py:915 DEBUG _setenv_variables: setting environment variable F77 to gfortran | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2018-11-14 15:58:47,642 toolchain.py:915 DEBUG _setenv_variables: setting environment variable F90 to gfortran | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2018-11-14 15:58:47,642 toolchain.py:915 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2018-11-14 15:58:47,642 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,643 toolchain.py:915 DEBUG _setenv_variables: setting environment variable FC to gfortran | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2018-11-14 15:58:47,643 toolchain.py:915 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,643 toolchain.py:915 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -march=native -fno-math-errno | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,643 toolchain.py:915 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2018-11-14 15:58:47,643 toolchain.py:915 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib -L/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable LDFLAGS set to -L/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib -L/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib (previously undefined) | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib64 -L/apps/brussel/CO7/skylake/software/GCCcore/6.4.0/lib -L/apps/brussel/CO7/skylake/software/binutils/2.28-GCCcore-6.4.0/lib (previously undefined) | |
| == 2018-11-14 15:58:47,643 toolchain.py:915 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread | |
| == 2018-11-14 15:58:47,643 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2018-11-14 15:58:47,644 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2018-11-14 15:58:47,644 toolchain.py:915 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native | |
| == 2018-11-14 15:58:47,644 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2018-11-14 15:58:47,644 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2018-11-14 15:58:47,644 toolchain.py:915 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
| == 2018-11-14 15:58:47,644 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,644 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2018-11-14 15:58:47,644 easyblock.py:1458 INFO Using /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9/ as start dir | |
| == 2018-11-14 15:58:47,644 easyblock.py:1461 DEBUG Changed to real build directory /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9/ (start_dir) | |
| == 2018-11-14 15:58:47,644 easyblock.py:2604 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2018-11-14 15:58:47,644 build_log.py:236 INFO configuring... | |
| == 2018-11-14 15:58:47,644 easyblock.py:2612 INFO Starting configure step | |
| == 2018-11-14 15:58:47,644 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:47,645 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:47,645 templates.py:154 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x2aaabe959f90> | |
| == 2018-11-14 15:58:47,645 templates.py:178 DEBUG version found in easyconfig is 0.9 | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: github_account, config: %(namelower)s | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: name, config: patchelf | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: version, config: 0.9 | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: versionsuffix, config: | |
| == 2018-11-14 15:58:47,645 templates.py:222 DEBUG name: versionprefix, config: | |
| == 2018-11-14 15:58:47,645 easyblock.py:2618 INFO Running method configure_step part of step configure | |
| == 2018-11-14 15:58:47,646 run.py:173 DEBUG run_cmd: running cmd sh bootstrap.sh && ./configure --prefix=/work/smoors/ebtest/petsc/software/patchelf/0.9-GCCcore-6.4.0 (in /tmp/smoors/build/patchelf/0.9/GCCcore-6.4.0/patchelf-0.9) | |
| == 2018-11-14 15:58:47,646 run.py:192 INFO running cmd: sh bootstrap.sh && ./configure --prefix=/work/smoors/ebtest/petsc/software/patchelf/0.9-GCCcore-6.4.0 | |
| == 2018-11-14 15:58:47,706 build_log.py:158 ERROR EasyBuild crashed with an error (at ?:124 in __init__): cmd "sh bootstrap.sh && ./configure --prefix=/work/smoors/ebtest/petsc/software/patchelf/0.9-GCCcore-6.4.0 " exited with exit code 127 and output: | |
| bootstrap.sh: line 2: autoreconf: command not found | |
| (at easybuild/tools/run.py:501 in parse_cmd_output) | |
| == 2018-11-14 15:58:47,706 easyblock.py:2860 WARNING build failed (first 300 chars): cmd "sh bootstrap.sh && ./configure --prefix=/work/smoors/ebtest/petsc/software/patchelf/0.9-GCCcore-6.4.0 " exited with exit code 127 and output: | |
| bootstrap.sh: line 2: autoreconf: command not found | |
| == 2018-11-14 15:58:47,706 easyblock.py:285 INFO Closing log for application name patchelf version 0.9 |
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