Aleksandar Bojchevski abojchevski
⚔️
abojchevski
/ gist:97e54742ab3f5ce51281791fae89f8bc
Created
April 14, 2016 12:17
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| REMOVING lysine residues at positions 147 and 151 ['lysine residues at positions 147', 'and', '151'] | |
| REMOVING Replacement of histidines 147 and 151 with tyrosine ['Replacement of histidines 147', 'and', '151 with tyrosine'] | |
| REMOVING inhibitors to histidine residues at positions 147 and 151 ['inhibitors to histidine residues at positions 147', 'and', '151'] | |
| REMOVING substitution in codon 14, coding for a histidine in GPT-1 and an asparagine in GPT-2 ['substitution in codon 14', ',', 'coding for a histidine in GPT-1', 'and', 'an asparagine in GPT-2'] | |
| REMOVING Mutation of both Ser(180) and Ser(181) to Ala ['Mutation of both Ser(180)', 'and', 'Ser(181) to Ala'] | |
| REMOVING cytosine-to-guanine transversion, a mutation that caused a single amino acid substitution (glutamine instead of glutamic acid) at position 22 ['cytosine-to-guanine transversion', ',', 'a mutation that caused a single amino acid substitution (glutamine instead of glutamic acid) at position 22'] | |
| REMOVING serine residues 367, 1893 ['serine residues 3 |
abojchevski
/ gist:a909a22bf7fad1c17f0d33dc5c612ca0
Created
April 14, 2016 12:39
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| WITH | |
| # class tp fp fn fp_ov fn_ov match P P_SE R R_SE F F_SE match P P_SE R R_SE F F_SE | |
| 0 319 56 82 36 39 e 0.8507 0.0023 0.7955 0.0025 0.8222 0.0022 o 0.9517 0.0014 0.9016 0.0018 0.9260 0.0013 | |
| 1 69 191 194 151 124 e 0.2654 0.0023 0.2624 0.0023 0.2639 0.0022 o 0.8958 0.0013 0.8309 0.0019 0.8622 0.0013 | |
| 2 17 42 43 23 25 e 0.2881 0.0054 0.2833 0.0057 0.2857 0.0046 o 0.7738 0.0057 0.7831 0.0055 0.7784 0.0045 | |
| 405 289 319 210 188 e 0.5836 0.0024 0.5594 0.0023 0.5712 0.0023 o 0.9104 0.0010 0.8597 0.0012 0.8844 0.0009 | |
| WITHOUT | |
| # class tp fp fn fp_ov fn_ov match P P_SE R R_SE F F_SE match P P_SE R R_SE F F_SE |
abojchevski
/ proper w
Last active
April 15, 2016 12:01
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| /home/abojchevski/anaconda3/bin/python /home/abojchevski/projects/nala/scripts/train.py --test_corpus tmVar_test --model_path_1 /home/abojchevski/Downloads/nala_BIEO_del_None_466744.bin --we | |
| SpacyLemmatizer: INIT START | |
| SpacyLemmatizer: INIT END | |
| word embddings loaded with vocab size: 519819 | |
| Running arguments: | |
| crf_train_params = None | |
| cv_fold = None | |
| cv_n = None | |
| delete_subclasses = [] | |
| do_train = False |
abojchevski
/ after
Created
April 15, 2016 12:49
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| /home/abojchevski/anaconda3/bin/python /home/abojchevski/projects/nala/scripts/train.py --test_corpus tmVar_test --model_path_1 /home/abojchevski/Downloads/nala_BIEO_del_None_466744.bin --we | |
| SpacyLemmatizer: INIT START | |
| SpacyLemmatizer: INIT END | |
| Running arguments: | |
| word embddings loaded with vocab size: 519819 | |
| crf_train_params = None | |
| cv_fold = None | |
| cv_n = None | |
| delete_subclasses = [] | |
| do_train = False |
abojchevski
/ Errors on SETH
Last active
April 15, 2016 16:28
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| /home/abojchevski/anaconda3/bin/python /home/abojchevski/projects/nala/scripts/train.py --test_corpus SETH --model_path_1 /home/abojchevski/Downloads/nala_BIEO_del_None_466744.bin --we | |
| reading from cache /home/abojchevski/.nalaf/DownloadArticle_cache.json | |
| writing the cache /home/abojchevski/.nalaf/DownloadArticle_cache.json | |
| SpacyLemmatizer: INIT START | |
| SpacyLemmatizer: INIT END | |
| word embddings loaded with vocab size: 519819 | |
| Running arguments: | |
| crf_train_params = None | |
| cv_fold = None | |
| cv_n = None |
abojchevski
/ Errors on IDP
Last active
April 15, 2016 16:30
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| /home/abojchevski/anaconda3/bin/python /home/abojchevski/projects/nala/scripts/train.py --test_corpus IDP4 --model_path_1 /home/abojchevski/Downloads/nala_BIEO_del_None_466744.bin --we | |
| Iteration: 0 : /home/abojchevski/projects/nala/resources/bootstrapping/iteration_0 | |
| Dataset(159 documents and 3337 annotations) | |
| SpacyLemmatizer: INIT START | |
| SpacyLemmatizer: INIT END | |
| Running arguments: | |
| word embddings loaded with vocab size: 519819 | |
| crf_train_params = None | |
| cv_fold = None | |
| cv_n = None |
abojchevski
/ IDP4 after
Created
April 15, 2016 16:48
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| /home/abojchevski/anaconda3/bin/python /home/abojchevski/projects/nala/scripts/train.py --test_corpus IDP4 --model_path_1 /home/abojchevski/Downloads/nala_BIEO_del_None_466744.bin --we | |
| Iteration: 0 : /home/abojchevski/projects/nala/resources/bootstrapping/iteration_0 | |
| Dataset(157 documents and 3337 annotations) | |
| SpacyLemmatizer: INIT START | |
| SpacyLemmatizer: INIT END | |
| word embddings loaded with vocab size: 519819 | |
| Running arguments: | |
| crf_train_params = None | |
| cv_fold = None |
abojchevski
/ gist:0e88af341936a9a495ba7aac9776adf5
Created
April 18, 2016 11:26
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| 8306: FP NOT OVERLAPPING A to G | |
| 8308: FP NOT OVERLAPPING In-frame single codon deletion | |
| 8310: FP NOT OVERLAPPING 1AT | |
| 8314: FP NOT OVERLAPPING 1AT | |
| 8316: FP NOT OVERLAPPING 1AT | |
| 8318: FP NOT OVERLAPPING IVS+6C | |
| 8321: FP NOT OVERLAPPING substitution of a basic residue arginine to a noncharged residue serine | |
| 8323: FP NOT OVERLAPPING amino acid sequence from positions 415 to 420 | |
| 8324: FP NOT OVERLAPPING W221-I222-H223 | |
| 8325: FP NOT OVERLAPPING 2-bp deletion |
abojchevski
/ gist:eb0facf7a1122a3ed65dc2db2799b00f
Created
April 25, 2016 11:45
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| 210-AAJV,Dell Precision T1700 MT CTO Basis | |
| ,Part Number,Description,Quantity | |
| ,6337P,"LABEL, SVC TAG/EXPRESS CODE, LATC",1 | |
| ,JD509,"LABEL, REGULATORY, SIDE, UNIVERSAL, BLANK , V2",1 | |
| ,T845M,"INSTRUCTION, TRIGGER, SVC TAG",1 | |
| 328-BBBV,Dell Precision T1700 MT Verpackung | |
| ,Part Number,Description,Quantity | |
| ,G20NP,"SHIPPING MATERIAL, BOX, OPTION, KTSK, MNTW, EUROPE, MIDDLE EAST & AFRICA",1 | |
| ,HK8G4,"CUSTOMER KIT, DVD+/-RW, 8X, TOSHIBA SAMSUNG STORAGE TECHNOLOGY, OPTIPLEX, 780",1 | |
| ,VPD2H,"SHIPPING MATERIAL, CUSHION, SYSTEM, CMRS, MNTW",1 |
abojchevski
/ gist:b3a80d197dbd03d28368fdef86a85373
Created
April 25, 2016 11:45
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| 210-AAJV Dell Precision T1700 MT CTO Basis | |
| Part Number Description Quantity | |
| 6337P LABEL, SVC TAG/EXPRESS CODE, LATC 1 | |
| JD509 LABEL, REGULATORY, SIDE, UNIVERSAL, BLANK , V2 1 | |
| T845M INSTRUCTION, TRIGGER, SVC TAG 1 | |
| 328-BBBV Dell Precision T1700 MT Verpackung | |
| Part Number Description Quantity | |
| G20NP SHIPPING MATERIAL, BOX, OPTION, KTSK, MNTW, EUROPE, MIDDLE EAST & AFRICA 1 | |
| HK8G4 CUSTOMER KIT, DVD+/-RW, 8X, TOSHIBA SAMSUNG STORAGE TECHNOLOGY, OPTIPLEX, 780 1 | |
| VPD2H SHIPPING MATERIAL, CUSHION, SYSTEM, CMRS, MNTW 1 |
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