Skip to content

Instantly share code, notes, and snippets.

View adelq's full-sized avatar

Adel Qalieh adelq

View GitHub Profile
@adelq
adelq / file1.py
Last active August 29, 2015 14:07 — forked from anonymous/file1.py
replicates = ["rep3", "rep4"]
proteins = ["protein",
"noprotein"]
cutadapt = '''cutadapt -a TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACnnnnnnATCTCGTATGCCGTCTTCTGCTTG -e 0.06 -O 6 -m 14 \
data/fastqFiles/totalArab_nuc_rep3_dsRNase_noprotein.raw.fastq \
-o data/fastqFiles/totalArab_nuc_rep3_dsRNase_noprotein.trimmed.fastq \
--discard-untrimmed &'''
cutadapt
print cutadapt
cutadapt1 = """cutadapt -a TGGAATTCTCGGGTGCCAAGGAACTCCAGTCACnnnnnnATCTCGTATGCCGTCTTCTGCTTG -e 0.06 -O 6 -m 14 \
{
"metadata": {
"name": "Power Analysis"
},
"nbformat": 3,
"nbformat_minor": 0,
"worksheets": [
{
"cells": [
{